Query 023961
Match_columns 274
No_of_seqs 214 out of 866
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 3E-123 1E-127 858.7 20.2 273 1-273 1-279 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 5E-122 2E-126 851.3 16.3 273 1-273 1-284 (301)
3 2zkr_n 60S ribosomal protein L 100.0 4E-120 1E-124 837.7 10.2 273 1-274 1-274 (297)
4 3iz5_Q 60S ribosomal protein L 100.0 8E-122 3E-126 850.3 -7.0 270 1-273 5-274 (304)
5 3j21_O 50S ribosomal protein L 100.0 5.8E-81 2E-85 553.5 4.8 195 11-251 2-197 (203)
6 1vq8_N 50S ribosomal protein L 100.0 2E-74 6.8E-79 506.4 12.6 184 11-251 2-185 (187)
7 3r8s_O 50S ribosomal protein L 100.0 3E-34 1E-38 235.1 7.3 109 29-172 8-116 (116)
8 1ovy_A 50S ribosomal protein L 100.0 2.4E-34 8.1E-39 237.1 5.8 112 25-172 9-120 (120)
9 3v2d_S 50S ribosomal protein L 100.0 2.4E-32 8.2E-37 222.8 9.7 107 26-172 6-112 (112)
10 2zjr_L 50S ribosomal protein L 100.0 1.2E-32 4E-37 225.3 1.0 105 29-172 8-114 (114)
11 3bbo_Q Ribosomal protein L18; 100.0 4.4E-30 1.5E-34 220.7 0.8 112 26-172 47-161 (161)
12 4gmn_B 60S ribosomal protein L 99.9 3.5E-25 1.2E-29 154.9 1.1 43 1-43 1-43 (49)
13 2vqe_K 30S ribosomal protein S 95.5 0.04 1.4E-06 45.5 7.5 101 46-181 14-123 (129)
14 3j20_M 30S ribosomal protein S 95.4 0.081 2.8E-06 44.2 9.1 108 47-182 13-131 (137)
15 3r8n_K 30S ribosomal protein S 94.7 0.083 2.8E-06 42.9 7.1 101 46-181 4-113 (117)
16 3bbn_K Ribosomal protein S11; 94.6 0.052 1.8E-06 45.5 5.7 102 45-181 26-136 (140)
17 2xzm_K RPS14E; ribosome, trans 93.3 0.11 3.8E-06 44.1 5.4 106 48-181 28-144 (151)
18 3u5c_O RP59A, 40S ribosomal pr 93.1 0.074 2.5E-06 44.4 3.9 104 48-181 14-130 (137)
19 4hyz_A Uncharacterized protein 52.5 21 0.00071 27.8 5.0 51 188-244 10-60 (114)
20 3v7n_A Threonine synthase; ssg 49.9 9.6 0.00033 37.3 3.2 63 159-244 23-86 (487)
21 1w53_A Phosphoserine phosphata 45.1 31 0.001 26.4 4.7 45 203-249 15-61 (84)
22 4f4f_A Threonine synthase; str 41.6 9.3 0.00032 37.1 1.6 64 160-245 23-87 (468)
23 2j6y_A Phosphoserine phosphata 38.6 42 0.0014 26.9 4.8 38 212-251 21-61 (111)
24 2r80_A Hemoglobin subunit alph 35.4 56 0.0019 25.7 5.1 72 173-249 37-112 (141)
25 1vb3_A Threonine synthase; PLP 35.3 24 0.00082 33.3 3.3 63 159-243 17-80 (428)
26 2zs0_C Extracellular giant hem 32.2 72 0.0025 25.1 5.3 73 173-249 44-123 (147)
27 2zs0_A Extracellular giant hem 31.8 79 0.0027 24.6 5.4 73 173-249 40-118 (140)
28 1yhu_D Hemoglobin B2 chain; gl 31.7 92 0.0031 24.5 5.8 72 173-248 44-122 (149)
29 1y6z_A Heat shock protein, put 30.8 13 0.00043 33.8 0.5 40 193-233 123-165 (263)
30 2gq0_A Chaperone protein HTPG; 30.6 19 0.00064 33.5 1.7 35 199-233 124-161 (303)
31 3ubc_A Hemoglobin-like flavopr 28.1 1.1E+02 0.0038 23.2 5.6 65 173-248 36-104 (131)
32 3d1k_A Hemoglobin subunit alph 27.6 1E+02 0.0034 24.1 5.3 72 173-249 37-113 (142)
33 1y4s_A Chaperone protein HTPG; 26.6 41 0.0014 33.5 3.4 36 199-234 352-390 (559)
34 2w72_C Human hemoglobin A; iro 26.4 99 0.0034 24.0 5.1 72 173-249 37-112 (141)
35 1gcv_B Hemoglobin; oxygen stor 25.5 98 0.0034 24.3 4.9 68 173-248 36-106 (136)
36 2xrh_A Protein HP0721; unknown 24.4 84 0.0029 24.8 4.2 42 207-248 42-86 (100)
37 1jeb_A Hemoglobin zeta chain; 23.9 1.1E+02 0.0039 23.6 5.0 71 173-248 38-112 (142)
38 1x9f_A Globin IV, extracellula 23.1 1.2E+02 0.004 24.0 5.0 71 173-248 47-125 (151)
39 3bom_A Hemoglobin subunit alph 22.6 1.1E+02 0.0037 23.9 4.7 72 173-249 38-114 (143)
40 1c7c_A Protein (deoxyhemoglobi 22.6 1.1E+02 0.0037 26.8 5.1 72 173-249 37-112 (283)
41 3pry_A Heat shock protein HSP 21.7 37 0.0013 30.9 1.8 34 199-233 126-162 (268)
42 1x9f_D Globin C, hemoglobin ch 21.4 1.6E+02 0.0056 22.6 5.5 72 173-248 40-117 (140)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=3.3e-123 Score=858.71 Aligned_cols=273 Identities=56% Similarity=0.917 Sum_probs=265.2
Q ss_pred CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (274)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS 80 (274)
|+||||+||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCC-CCCCceEEEeecCcccccCCcee
Q 023961 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (274)
Q Consensus 81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vLD~Gl~r~t~g~RVf 159 (274)
+||+++||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||++| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999999999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred eeecccccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 023961 160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELY 239 (274)
Q Consensus 160 aalKGA~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y 239 (274)
||||||+||||+||||+++|||||+|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y 240 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY 240 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCC-----cccccCCCCCCCC
Q 023961 240 KKVHAAIRADPNQKKSEKKPP-----AEHKRYGQCIMWL 273 (274)
Q Consensus 240 ~~~~~~I~~~p~~~~~~k~~~-----~~~k~~~~~kms~ 273 (274)
++||++|++||++++++++.+ .++|+||++||||
T Consensus 241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~ 279 (297)
T 3u5e_D 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSK 279 (297)
T ss_dssp HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCH
T ss_pred HHHHHHHHhCcccccccccccccccchhccccCcccCCH
Confidence 999999999999887776543 3568999999997
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=5.3e-122 Score=851.26 Aligned_cols=273 Identities=51% Similarity=0.847 Sum_probs=264.5
Q ss_pred CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (274)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS 80 (274)
|+||||+||+|||+|||||||||||||||||+|++||+|||||||+|+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCC-CCCCceEEEeecCcccccCCcee
Q 023961 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (274)
Q Consensus 81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vLD~Gl~r~t~g~RVf 159 (274)
+||+++||+++++|++|||+||+|||+|||++||||++|+|+++|||++|+||++| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999999999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred eeecccccCCccccCCccccCCCCCCc-----cCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHc--CCCc
Q 023961 160 GALKGALDGGLDIPHSEKRFAGFSKDS-----KQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKR--GIEA 232 (274)
Q Consensus 160 aalKGA~DgGL~iPh~~~~fp~~~~~~-----k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~--~~~p 232 (274)
||||||+||||+||||+++|||||+|+ ++||||+|++||+|+|||+||++|+|||||+|++|||+||++ ||+|
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~ 240 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV 240 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence 999999999999999999999999987 999999999999999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCC---CCcccccCCCCCCCC
Q 023961 233 DNLEELYKKVHAAIRADPNQKKSEKK---PPAEHKRYGQCIMWL 273 (274)
Q Consensus 233 ~~~e~~y~~~~~~I~~~p~~~~~~k~---~~~~~k~~~~~kms~ 273 (274)
|+||+||++||++||+||++++++++ +..++|+||++||||
T Consensus 241 ~~~e~~y~~~h~~Ir~~p~~~k~~~~~~~~~~~~k~~~~~klt~ 284 (301)
T 4a17_M 241 DSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTA 284 (301)
T ss_dssp SCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCHHHHHHSCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCccccccccccccccccccccCcccCCH
Confidence 99999999999999999999887665 234678999999997
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.7e-120 Score=837.70 Aligned_cols=273 Identities=59% Similarity=0.975 Sum_probs=233.3
Q ss_pred CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (274)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS 80 (274)
|+||||+||+|||+|||||||||||||||||+|+|||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCC-CCCCceEEEeecCcccccCCcee
Q 023961 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (274)
Q Consensus 81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vLD~Gl~r~t~g~RVf 159 (274)
+||+++||+++++|++||||||+|||+|||++||||++|+|++++|||+|+||+.+ +|+||+||||+||++||+|||||
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred eeecccccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 023961 160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELY 239 (274)
Q Consensus 160 aalKGA~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y 239 (274)
|+|+||+||||+||||+++|||||+++++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y 240 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccccCCCCCCCCC
Q 023961 240 KKVHAAIRADPNQKKSEKKPPAEHKRYGQCIMWLN 274 (274)
Q Consensus 240 ~~~~~~I~~~p~~~~~~k~~~~~~k~~~~~kms~~ 274 (274)
++||++|++||+++++++++++ .|+||++||||.
T Consensus 241 ~~~~~~Ir~~P~~~~~~k~~~~-~k~~~~~klt~~ 274 (297)
T 2zkr_n 241 KKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLA 274 (297)
T ss_dssp HHHHHHC----------------------------
T ss_pred HHHHHHHHhCCCcccccccccc-cccccccccChH
Confidence 9999999999999998888765 489999999973
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=7.9e-122 Score=850.31 Aligned_cols=270 Identities=77% Similarity=1.220 Sum_probs=264.2
Q ss_pred CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (274)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS 80 (274)
|+|||||||+|||+|||||||||||||||||+|++||+|||||||||+|||| ||+|||||||++.++||+|||||||
T Consensus 5 ~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS 81 (304)
T 3iz5_Q 5 GGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYS 81 (304)
T ss_dssp SSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEET
T ss_pred cceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceee
Q 023961 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFG 160 (274)
Q Consensus 81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfa 160 (274)
+||+++||+++++|++||||||+|||+|||++||||++|+|+++|||++|+||+.++|+||+||||+||+|||+||||||
T Consensus 82 ~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfa 161 (304)
T 3iz5_Q 82 HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFG 161 (304)
T ss_dssp TTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHH
T ss_pred CchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccccCCCCCceEEEecCCcccccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999966899999999999999999999999
Q ss_pred eecccccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHH
Q 023961 161 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYK 240 (274)
Q Consensus 161 alKGA~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y~ 240 (274)
|||||+||||+||||+++|||||+|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||+
T Consensus 162 alKGA~DgGL~IPhs~~~fpg~d~e~k~~~aev~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~le~~y~ 241 (304)
T 3iz5_Q 162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYK 241 (304)
T ss_dssp HHHHHHTTTCCCCCCSSSCCCGGGTSSCCCCSSSCCSCSSSSTHHHHHSCCCCCSSCCSHHHHHHHHHHHSCCCCCCCCC
T ss_pred eeccccccCcccCCCcccccCccccccccCHHHHHHHHcCccHHHHHHhccccCHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccccCCCCCCCC
Q 023961 241 KVHAAIRADPNQKKSEKKPPAEHKRYGQCIMWL 273 (274)
Q Consensus 241 ~~~~~I~~~p~~~~~~k~~~~~~k~~~~~kms~ 273 (274)
+||++||+||++++++++++.++|+||++||||
T Consensus 242 ~~h~~Ir~~P~~~k~~~~~~~~~k~~~~~klt~ 274 (304)
T 3iz5_Q 242 KVHAAIRADPTMAKSTKKEPATHKRYNLKKLTY 274 (304)
T ss_dssp CCCCSCSCCHHHHHHCSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccCCCccccccccCcccCCH
Confidence 999999999998887776655779999999986
No 5
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-81 Score=553.49 Aligned_cols=195 Identities=38% Similarity=0.600 Sum_probs=188.8
Q ss_pred cccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcc-ccccc
Q 023961 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLE 89 (274)
Q Consensus 11 ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~-k~g~k 89 (274)
|..+|||||||||||||||||+|++|++|+ +|||+|++||+|||||||+++++||+|||||||+||+ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~-------kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSG-------KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTC-------CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcC-------CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 568999999999999999999999999998 7999999999999999999777899999999999999 79999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCC
Q 023961 90 VGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGG 169 (274)
Q Consensus 90 ~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgG 169 (274)
.+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|||
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~y~~hgRV~Ala~gAre~G 128 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA--------GIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAG 128 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS--------CCCC------------------CEEECCSSCCCTTSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC--------CCCE------------------EEEecCcceeccCcchhhhhhhcccCC
Confidence 99999999999999999999999 9998 999999999999999999999999999
Q ss_pred ccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcC
Q 023961 170 LDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 249 (274)
Q Consensus 170 L~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y~~~~~~I~~~ 249 (274)
|+||||+++|||+ +||+|+|||+||++|+|||||+|++|||+||++||+||+||+||++||++|++.
T Consensus 129 L~iPhs~~~fp~~-------------~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~~~~~~~~~~~~~~~~~~I~~~ 195 (203)
T 3j21_O 129 LNVPHSPEIFPDE-------------YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARIIEK 195 (203)
T ss_dssp CCCCCCSSCSCCH-------------HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCCSSSSSCCHHHHHHHHTTCTTT
T ss_pred eecccCCccCCCc-------------ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999994 799999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 023961 250 PN 251 (274)
Q Consensus 250 p~ 251 (274)
..
T Consensus 196 ~~ 197 (203)
T 3j21_O 196 FE 197 (203)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=2e-74 Score=506.36 Aligned_cols=184 Identities=37% Similarity=0.576 Sum_probs=176.8
Q ss_pred cccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc
Q 023961 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEV 90 (274)
Q Consensus 11 ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~ 90 (274)
|..+|||||||||||||||||+|+||++|+ +|||+|++||+|||||||+++.+||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~-------rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcC-------CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 578999999999999999999999999998 7999999999999999997777899999999999999889987
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCc
Q 023961 91 GLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGL 170 (274)
Q Consensus 91 g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL 170 (274)
+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|+||
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~yh~GgRV~Ala~gAre~GL 128 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL 128 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHC--------CCCE------------------EEEcCCCceeccchHHHHHHHHhhcCCE
Confidence 8999999999999999999999 9998 9999999999999999999999999999
Q ss_pred cccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCC
Q 023961 171 DIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP 250 (274)
Q Consensus 171 ~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y~~~~~~I~~~p 250 (274)
+||||+++|||| +||+|+|||+||++|. | +||++||+||+||+||++||++|++||
T Consensus 129 ~fph~~~~fp~~-------------~ri~G~hva~y~~~l~---~--------~y~~~~~~~~~l~~~~~~~~~~I~~~p 184 (187)
T 1vq8_N 129 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLE---E--------PLYSGDFDAADLPEHFDELRETLLDGD 184 (187)
T ss_dssp BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS---S--------CSSSSCSCSSCCHHHHHHHHHHHHSSS
T ss_pred eccCCCccCCCC-------------ceeccEEHHHHHHHhh---H--------HHHHCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999995 7999999999999993 2 899999999999999999999999999
Q ss_pred C
Q 023961 251 N 251 (274)
Q Consensus 251 ~ 251 (274)
+
T Consensus 185 ~ 185 (187)
T 1vq8_N 185 I 185 (187)
T ss_dssp S
T ss_pred C
Confidence 6
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=3e-34 Score=235.08 Aligned_cols=109 Identities=28% Similarity=0.221 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHH
Q 023961 29 DYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARR 108 (274)
Q Consensus 29 dY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~R 108 (274)
..+.|.|..+.+ +++|||+|++||+|||||||++ ++|+|||||||+|++.++|..+++|++|||+||+|||+|
T Consensus 8 ~r~~r~R~ki~~-----~~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~R 80 (116)
T 3r8s_O 8 RRATRARRKLQE-----LGATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAER 80 (116)
T ss_dssp HHHHHHHHHHHT-----TTCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----CCCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHH
Confidence 345666666666 6799999999999999999986 599999999999999999988999999999999999999
Q ss_pred HHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCccc
Q 023961 109 VLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (274)
Q Consensus 109 al~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~i 172 (274)
|+++ ||++ ++||+|+++|| |||+|+++||+|+||+.
T Consensus 81 al~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 81 ALEK--------GIKD------------------VSFDRSGFQYH--GRVQALADAAREAGLQF 116 (116)
T ss_dssp HHTT--------TCCC------------------CEEECTTSCSS--SHHHHHHHHHHHTTCCC
T ss_pred HHHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHhCCCC
Confidence 9999 9998 99999999995 79999999999999973
No 8
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=2.4e-34 Score=237.07 Aligned_cols=112 Identities=29% Similarity=0.293 Sum_probs=90.0
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHH
Q 023961 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (274)
Q Consensus 25 egKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlL 104 (274)
+.+...+.|.|..++++ +++|||+|++||+|||||||++ +||+|||||||+|++ ++ ..+++|++|||+||+|
T Consensus 9 ~~r~~r~~R~r~ki~gt----~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~l 80 (120)
T 1ovy_A 9 AVRKKRHARIRKKIFGT----TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGEL 80 (120)
T ss_dssp ---------------CC----SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC----CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHH
Confidence 33445677888899987 8899999999999999999986 699999999999998 45 3468999999999999
Q ss_pred HHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCccc
Q 023961 105 LARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (274)
Q Consensus 105 lA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~i 172 (274)
||+||+++ ||++ |+||+|+++| ||||+|+++||+|+||+.
T Consensus 81 lA~Ral~~--------GI~~------------------vvfDrgg~~y--hgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 81 VAKRALEK--------GIKQ------------------VVFDRGGYLY--HGRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHHHH--------SSSC------------------CCCCSTTCSS--CSSTHHHHHHHHHHHCCC
T ss_pred HHHHHHHC--------CCCE------------------EEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence 99999999 9998 9999999999 579999999999999974
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.97 E-value=2.4e-32 Score=222.83 Aligned_cols=107 Identities=29% Similarity=0.301 Sum_probs=95.5
Q ss_pred CchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHH
Q 023961 26 GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLL 105 (274)
Q Consensus 26 gKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLl 105 (274)
.+...+.|.|..+++ +|+|||+|++||+|||||||++ +||+|||||||+|++. + ++|++|||+||+||
T Consensus 6 ~r~~r~~r~r~ki~g-----t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~ll 73 (112)
T 3v2d_S 6 AYERRKFRVRNRIKR-----TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRAL 73 (112)
T ss_dssp HHHHHHHHHHHHHHH-----TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHHH
Confidence 334456777777777 5699999999999999999986 6999999999999973 2 67999999999999
Q ss_pred HHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCccc
Q 023961 106 ARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (274)
Q Consensus 106 A~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~i 172 (274)
|+||+++ ||++ ++||+|+++|| |||+|+++||+|+||+.
T Consensus 74 A~ra~~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 74 AEKALAL--------GIKQ------------------VAFDRGPYKYH--GRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHHTT--------TCCB------------------CEEECTTSCSC--SSTTHHHHHHHHTTCBC
T ss_pred HHHHHHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHcCCCC
Confidence 9999999 9998 99999999994 79999999999999973
No 10
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=1.2e-32 Score=225.26 Aligned_cols=105 Identities=28% Similarity=0.283 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhCCCCCC--CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHH
Q 023961 29 DYRARIRLINQDKNKYN--TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLA 106 (274)
Q Consensus 29 dY~~R~rli~qdknky~--s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA 106 (274)
..+.|.|..++++ + +++|||+|++||+|||||||++ +||+|||||||+|| .+++|++|||+||+|||
T Consensus 8 ~r~~r~r~ki~gt---~~~~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~llA 76 (114)
T 2zjr_L 8 RRKLRTRRKVRTT---TAASGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKALA 76 (114)
T ss_dssp CHHHHHHHHHHSC---STTTCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHHHH
T ss_pred HHHHHHHhhhccc---cCCCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHHHH
Confidence 4577888888883 3 6799999999999999999976 69999999999996 25789999999999999
Q ss_pred HHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCccc
Q 023961 107 RRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (274)
Q Consensus 107 ~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~i 172 (274)
+|++++ ||++ |+||+|+++| ||||+|+++||+|+||++
T Consensus 77 ~Ral~~--------GI~~------------------vvfDrgg~~y--hgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 77 AAAAEK--------GIKQ------------------VVFDRGSYKY--HGRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHTT--------CCCC------------------CEECCCSSCS--CSHHHHHHHHHHHHC---
T ss_pred HHHHHC--------CCCE------------------EEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence 999999 9998 9999999999 689999999999999974
No 11
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=4.4e-30 Score=220.74 Aligned_cols=112 Identities=23% Similarity=0.222 Sum_probs=97.4
Q ss_pred CchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcc---ccccccCCCcHHHHHHHH
Q 023961 26 GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP---RYGLEVGLTNYAAAYCTG 102 (274)
Q Consensus 26 gKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~---k~g~k~g~tN~~AAy~tG 102 (274)
-+...+.|.|..++|+ +.+|||+|++||+||||||||+ ++|+|||||||.|.+ .++| +.++|++||++||
T Consensus 47 ~R~rR~~RiR~ki~gt----~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~VG 119 (161)
T 3bbo_Q 47 DRTARHVRIRKKVEGT----PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKKVG 119 (161)
T ss_dssp CGGGTSCCSCSGGGGS----SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhccC----CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHHHH
Confidence 3444556777888886 6799999999999999999987 588999999998754 2444 4578999999999
Q ss_pred HHHHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCccc
Q 023961 103 LLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (274)
Q Consensus 103 lLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~i 172 (274)
.+||+||+++ ||++ +|||+|+++|| |||+|+++||+|+||+.
T Consensus 120 ~liAeRA~e~--------GI~~------------------VvFDRgg~~Yh--GRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 120 EVIASACLEK--------GITK------------------VAFDRGGYPYH--GRVKALADAAREKGLQF 161 (161)
T ss_dssp HHSSSHHHHT--------SSCC------------------CCCCCSSSCSS--STTHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHC--------CCCE------------------EEEeCCCCcch--HHHHHHHHHHHHhCCcC
Confidence 9999999999 9998 99999999995 69999999999999974
No 12
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.90 E-value=3.5e-25 Score=154.92 Aligned_cols=43 Identities=60% Similarity=0.930 Sum_probs=41.8
Q ss_pred CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCC
Q 023961 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNK 43 (274)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknk 43 (274)
|||||++||+|||+||||||||||||||||++|++||+|||+.
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKas 43 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKGS 43 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999854
No 13
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.52 E-value=0.04 Score=45.53 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=75.1
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccc
Q 023961 46 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (274)
Q Consensus 46 s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~ 125 (274)
-+...+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -...-||+.++.-+|+++.+. |+..+
T Consensus 14 ~~~gi~hI~as~NNTivtiTd~--~G-~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 80 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY--------GMQSV 80 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEECT--TS-CEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT--------TCCEE
T ss_pred ccceEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh--------CCeEE
Confidence 4568899999999999999996 46 67887887766544432 356789999999999999998 88762
Q ss_pred cCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCcc---------ccCCccccCC
Q 023961 126 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (274)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~---------iPh~~~~fp~ 181 (274)
. ++| .|. +-|| .+++++...+||. |||+-.|-|.
T Consensus 81 ~----------------V~v-kG~----G~Gr-e~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K 123 (129)
T 2vqe_K 81 D----------------VIV-RGT----GAGR-EQAIRALQASGLQVKSIVDDTPVPHNGCRPKK 123 (129)
T ss_dssp E----------------EEE-ESC----CTTH-HHHHHHHHTSSSEEEECEECCCCCSSCSCCCG
T ss_pred E----------------EEE-ECC----CCCH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1 333 232 2244 5778888888976 6999888886
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.42 E-value=0.081 Score=44.19 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=75.9
Q ss_pred CcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCccccc
Q 023961 47 PKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEAT 126 (274)
Q Consensus 47 ~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~ 126 (274)
+..-+-|+-|-++.++.|.|. .|..||+.+|+-..-..|-. -...-||++++.-+|+++++. |++.+.
T Consensus 13 ~~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~--------Gi~~v~ 80 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK--------GIVGVH 80 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH--------TEEEEE
T ss_pred cceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc--------CCeEEE
Confidence 356677888999999999996 58679998887666444432 235668999999999999999 988622
Q ss_pred CcccccccCCCCCCceEEEee-cCccccc-CCceeeeecccccCCcc---------ccCCccccCCC
Q 023961 127 GEDYSVEPTENRRPFRALLDV-GLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAGF 182 (274)
Q Consensus 127 g~~~~ve~~~~~~~f~~vLD~-Gl~r~t~-g~RVfaalKGA~DgGL~---------iPh~~~~fp~~ 182 (274)
+.|-- |+.++.+ |----+|+++...+||. |||+-.|-||-
T Consensus 81 ----------------V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~ 131 (137)
T 3j20_M 81 ----------------IRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG 131 (137)
T ss_dssp ----------------EEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred ----------------EEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence 33321 3333311 22225577877778986 59999999984
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=94.73 E-value=0.083 Score=42.89 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=71.5
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccc
Q 023961 46 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (274)
Q Consensus 46 s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~ 125 (274)
-+.--+-|+-|-++.++.|.|. .| .+|+.+|+-.+...|-. -...-||++++.-+++++++. |++.+
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 70 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDR--QG-NALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY--------GIKNL 70 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TS-CCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS--------CCCEE
T ss_pred cceeEEEEEcccCCEEEEEEcC--CC-CEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh--------CCcEE
Confidence 3445566888999999999996 47 48888888766544433 235668899999999999998 88762
Q ss_pred cCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCcc---------ccCCccccCC
Q 023961 126 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (274)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~---------iPh~~~~fp~ 181 (274)
. ++| .|. +-|| -+++++....||. |||+-.|-|.
T Consensus 71 ~----------------v~v-kG~----G~Gr-~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K 113 (117)
T 3r8n_K 71 E----------------VMV-KGP----GPGR-ESTIRALNAAGFRITNITDVTPIPHNGCRPPK 113 (117)
T ss_dssp E----------------EEE-ECS----SSST-THHHHHHHHTTCEEEEEEECCCCCSSCSCCCC
T ss_pred E----------------EEE-eCC----CccH-HHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCC
Confidence 1 333 232 2233 5677877788987 5998888775
No 16
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=94.60 E-value=0.052 Score=45.52 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCccc
Q 023961 45 NTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 124 (274)
Q Consensus 45 ~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e 124 (274)
|-+..-+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -...-||+.++.-+++++++. |+..
T Consensus 26 ~~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~--------Gi~~ 92 (140)
T 3bbn_K 26 KIPKGVIHVQASFNNTIVTVTDV--RG-RVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ--------GMQR 92 (140)
T ss_dssp CCCCCEEEEEECSSCEEEEEECS--SS-CEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT--------CCCE
T ss_pred cceeeEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh--------CCeE
Confidence 35578999999999999999996 46 67888888766544432 356788899999999999888 8876
Q ss_pred ccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCcc---------ccCCccccCC
Q 023961 125 ATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (274)
Q Consensus 125 ~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL~---------iPh~~~~fp~ 181 (274)
+. ++| .| + +-|| .+++++...+||. |||+-.|-|.
T Consensus 93 v~----------------V~v-kG---~-G~GR-eaairaL~~~Gl~I~~I~DvTpiPhnGcRppK 136 (140)
T 3bbn_K 93 AE----------------VMI-KG---P-GLGR-DAALRAIRRSGILLSFVRDVTPMPHNGCRPPK 136 (140)
T ss_dssp EE----------------EEE-ES---C-STTS-SHHHHHHHTTTCEEEEEEECCCCCCSCCCCCC
T ss_pred EE----------------EEE-EC---C-CCcH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 11 222 33 1 2244 4778888888976 6898888775
No 17
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=93.34 E-value=0.11 Score=44.05 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=73.2
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccC
Q 023961 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATG 127 (274)
Q Consensus 48 KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g 127 (274)
..-+-|+-|-+++++.|.|. .|+.|+++++.-..-+.+-+ -...-||.+++.-+|+++++. |++.+.
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r~--ksTpyAAq~aa~~~a~~a~e~--------Gi~~v~- 94 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADRE--ESSPYAAMQAAIDVVNRCKEL--------KINALH- 94 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGGG--GSCHHHHHHHHHHHHHHHHHH--------TCCEEE-
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCCC--cCCHHHHHHHHHHHHHHHHHc--------CCeEEE-
Confidence 46788889999999999996 58777777554332222211 235678899999999999999 987621
Q ss_pred cccccccCCCCCCceEEE-eecCccccc-CCceeeeecccccCCcc---------ccCCccccCC
Q 023961 128 EDYSVEPTENRRPFRALL-DVGLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (274)
Q Consensus 128 ~~~~ve~~~~~~~f~~vL-D~Gl~r~t~-g~RVfaalKGA~DgGL~---------iPh~~~~fp~ 181 (274)
+.| ..|+.++.+ |.--.+|+++...+||. |||+-.|-|.
T Consensus 95 ---------------V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K 144 (151)
T 2xzm_K 95 ---------------IKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG 144 (151)
T ss_dssp ---------------EEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred ---------------EEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence 333 234454432 22236788888888987 6999888887
No 18
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=93.08 E-value=0.074 Score=44.42 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCC--CcHHHHHHHHHHHHHHHHHhhcccccccCcccc
Q 023961 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGL--TNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (274)
Q Consensus 48 KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~g~--tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~ 125 (274)
..-+-|+-|-++.++.|.|. .|..+++ .||-.+. .+++. ...-||.+++..+|+++++. |++.+
T Consensus 14 ~gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~g---fKg~r~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v 79 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDL--SGKETIA-RVTGGMK---VKADRDESSPYAAMLAAQDVAAKCKEV--------GITAV 79 (137)
T ss_dssp EEECCEEEETTEEEECCEET--TSSSCCC-CCBTTTT---SCCSTTTTCHHHHHHHHHHHHHHHHHH--------TCCEE
T ss_pred eEEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCcE---EeCCcccCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 34556888999999999996 5755544 4554442 33322 45668899999999999999 98862
Q ss_pred cCcccccccCCCCCCceEEE-eecCccccc-CCceeeeecccccCCcc---------ccCCccccCC
Q 023961 126 TGEDYSVEPTENRRPFRALL-DVGLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (274)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vL-D~Gl~r~t~-g~RVfaalKGA~DgGL~---------iPh~~~~fp~ 181 (274)
. +.| -.|+.++.+ |-==-+|+++...+||. |||+-.|-|+
T Consensus 80 ~----------------V~vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K 130 (137)
T 3u5c_O 80 H----------------VKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG 130 (137)
T ss_dssp E----------------CEEECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred E----------------EEEeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1 334 234444422 11124577877788987 5999888886
No 19
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=52.51 E-value=21 Score=27.84 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=44.1
Q ss_pred CCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHH
Q 023961 188 QLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHA 244 (274)
Q Consensus 188 ~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y~~~~~ 244 (274)
.||.+.+++ +-.+++..|.++|=+.-...||.=++..++++.|+ +++.+..
T Consensus 10 ~fde~~v~~-----~A~~~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~ 60 (114)
T 4hyz_A 10 GFDKETVRK-----QAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILE 60 (114)
T ss_dssp TCCHHHHHH-----HHHHHHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHH
T ss_pred hhhHHHHHH-----HHHHHHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHH
Confidence 578887776 66799999999999988899999999999999999 8887544
No 20
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=49.89 E-value=9.6 Score=37.32 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=41.5
Q ss_pred eeeecc-cccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHH
Q 023961 159 FGALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEE 237 (274)
Q Consensus 159 faalKG-A~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~ 237 (274)
-|++.| |.||||.||.+ +|-.+ .+.++ .+.+..- +|.=..-+|.|+ ..|++++|.+
T Consensus 23 ~a~l~Gla~DgGLyvP~~---~P~~~-------~~~~~-~~~~~sy-----------~ela~~il~~f~-~~i~~~~l~~ 79 (487)
T 3v7n_A 23 DILLGGLAKDGGLYLPSE---YPQVS-------ADELA-RWRTLPY-----------ADLAFEILSKFC-DDIAAADLRA 79 (487)
T ss_dssp HHTTCCCCTTSCCEEESS---CCCCC-------HHHHH-HHTTCCH-----------HHHHHHHHHHHC-SSSCHHHHHH
T ss_pred HHHHhCCCCCCceEcCcc---CCCCC-------HHHHH-HHhCCCH-----------HHHHHHHHHHHh-ccCCHHHHHH
Confidence 368888 89999999985 55432 22222 2223322 233345677888 7899999999
Q ss_pred HHHHHHH
Q 023961 238 LYKKVHA 244 (274)
Q Consensus 238 ~y~~~~~ 244 (274)
|-++|..
T Consensus 80 ~i~~ay~ 86 (487)
T 3v7n_A 80 ITRRTYT 86 (487)
T ss_dssp HHHHHSC
T ss_pred HHHHHhC
Confidence 9888765
No 21
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=45.07 E-value=31 Score=26.37 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=32.0
Q ss_pred HHHHHHHhcccChHHHH-hhHHHH-HHcCCCcchHHHHHHHHHHHHhcC
Q 023961 203 VAAYMRTLMEDEPEKYQ-SHFCEY-IKRGIEADNLEELYKKVHAAIRAD 249 (274)
Q Consensus 203 va~Y~~~L~eed~e~yk-~qFS~y-ik~~~~p~~~e~~y~~~~~~I~~~ 249 (274)
+.+|+..-.| .-.|+ .+||+. |+.+|.||++-++.+++...+--+
T Consensus 15 L~~yl~~~~E--~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~ 61 (84)
T 1w53_A 15 LSRYIAELTE--TSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPS 61 (84)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccH--HHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4556655443 23444 478886 578999999999999999888433
No 22
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=41.64 E-value=9.3 Score=37.07 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=42.4
Q ss_pred eeecc-cccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 023961 160 GALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL 238 (274)
Q Consensus 160 aalKG-A~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~ 238 (274)
|++.| |.||||.||.+ +|-.+ .+.++ .+.+..-. |.=..-+|.||...|++++|.++
T Consensus 23 a~l~gla~dgGLy~P~~---~p~~~-------~~~~~-~~~~~sy~-----------~~a~~i~~~f~~~~i~~~~l~~~ 80 (468)
T 4f4f_A 23 ALLAGLARDGGLYLPQE---YPQFT-------AEQIR-ALRGKSYV-----------EVALAVLTPFTGGEIPAADFERM 80 (468)
T ss_dssp HHHHCSCTTSCCEEESS---CCCCC-------HHHHH-TTTTCCHH-----------HHHHHHHGGGGTTCSCHHHHHHH
T ss_pred HHHhCCCCCCceEcCcc---CCCCC-------HHHHH-HHhCCCHH-----------HHHHHHHHHHhcCCCCHHHHHHH
Confidence 58888 89999999985 55432 22222 22333322 23344566777778999999999
Q ss_pred HHHHHHH
Q 023961 239 YKKVHAA 245 (274)
Q Consensus 239 y~~~~~~ 245 (274)
-++|...
T Consensus 81 ~~~ay~~ 87 (468)
T 4f4f_A 81 VREAYGT 87 (468)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998863
No 23
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=38.62 E-value=42 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.7
Q ss_pred ccChH-HHHh-hHHHH-HHcCCCcchHHHHHHHHHHHHhcCCC
Q 023961 212 EDEPE-KYQS-HFCEY-IKRGIEADNLEELYKKVHAAIRADPN 251 (274)
Q Consensus 212 eed~e-~yk~-qFS~y-ik~~~~p~~~e~~y~~~~~~I~~~p~ 251 (274)
..|+. .|+. +||+. |+.+|.||++-++.++|...+ +|.
T Consensus 21 ~~~E~~Ly~aq~fsr~liek~I~PEeiV~iHk~~i~~l--~~~ 61 (111)
T 2j6y_A 21 ELTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKEL--YPS 61 (111)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--CTT
T ss_pred cccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCC
Confidence 33443 3433 68875 788999999999999999998 554
No 24
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=35.40 E-value=56 Score=25.67 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=49.7
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|.-..-||.+|... =|++ .|..++++. |.+++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 37 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2r80_A 37 PQTKTYFPHFDLSH--GSAQIKGHGKKVAEA-LVEAANHID--DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAV 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhcCCCC--CCHHHHHHHHHHHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66667888775433 2334 666666654 778888875 45666666776544 599999999888888888865
Q ss_pred C
Q 023961 249 D 249 (274)
Q Consensus 249 ~ 249 (274)
.
T Consensus 112 ~ 112 (141)
T 2r80_A 112 H 112 (141)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=35.32 E-value=24 Score=33.26 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred eeeecc-cccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHH
Q 023961 159 FGALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEE 237 (274)
Q Consensus 159 faalKG-A~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~ 237 (274)
-|+++| |.||||.||.. +|-. +++.+++ +.+..-.+.+ ..-++.|+...|++++|.+
T Consensus 17 ~a~~~gl~~~GGl~vp~~---~p~~-------~~~~~~~-~~~~~y~~~a-----------~~i~~~f~~~~~~~~~l~~ 74 (428)
T 1vb3_A 17 QAVTQGLGKNQGLFFPHD---LPEF-------SLTEIDE-MLKLDFVTRS-----------AKILSAFIGDEIPQEILEE 74 (428)
T ss_dssp HHHHHCSBGGGBCEEESS---CCCC-------CHHHHHH-HTTSCHHHHH-----------HHHHHHHHGGGSCHHHHHH
T ss_pred HHHHccCCCCCcEEeccc---cCCC-------CHHHHHH-HhCCCHHHHH-----------HHHHHHHhcCCCCHHHHHH
Confidence 357889 79999999965 5764 3333222 1222112111 2234667766788888888
Q ss_pred HHHHHH
Q 023961 238 LYKKVH 243 (274)
Q Consensus 238 ~y~~~~ 243 (274)
+.+++-
T Consensus 75 ~~~~~~ 80 (428)
T 1vb3_A 75 RVRAAF 80 (428)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 877654
No 26
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=32.24 E-value=72 Score=25.09 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=44.5
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhh---HHHHH-Hc-CCCcchHHHHHHHHHHH
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSH---FCEYI-KR-GIEADNLEELYKKVHAA 245 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~q---FS~yi-k~-~~~p~~~e~~y~~~~~~ 245 (274)
|.-...||.++..+. =|++ .|-.++++. |..++..|. |++..... .+.-- .. ||+|+.++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (147)
T 2zs0_C 44 AAAQGLFSGVSADNP-DSADFRAHCVRVVNG-LDVAINMLN--DPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEV 119 (147)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCccCC-CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 555667776542221 1444 455566654 667777774 65554444 44333 34 99999999888888888
Q ss_pred HhcC
Q 023961 246 IRAD 249 (274)
Q Consensus 246 I~~~ 249 (274)
|++.
T Consensus 120 l~~~ 123 (147)
T 2zs0_C 120 MPQV 123 (147)
T ss_dssp GGGT
T ss_pred HHHH
Confidence 7653
No 27
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=31.77 E-value=79 Score=24.63 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=46.3
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHH----HHcCCCcchHHHHHHHHHHHH
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEY----IKRGIEADNLEELYKKVHAAI 246 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~y----ik~~~~p~~~e~~y~~~~~~I 246 (274)
|.-...||.++..+.. |++ .|-.++++ -|..++..|. |++.....+++. ...||+|++++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~~~-~~~~~~h~~~v~~-al~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 2zs0_A 40 GSSRALFSGVGVDDMN-SAAFTAHCLRVTG-ALNRLISQLD--QQATINADLAHLAGQHASRNLDASNFAAMGQAVMSVV 115 (140)
T ss_dssp GGGGGGGGGGTTTSTT-SHHHHHHHHHHHH-HHHHHHHTTT--CHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhcCCCCCC-CHHHHHHHHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6666677766422211 444 45566665 5778888874 666555544442 335999999998888878877
Q ss_pred hcC
Q 023961 247 RAD 249 (274)
Q Consensus 247 ~~~ 249 (274)
++.
T Consensus 116 ~~~ 118 (140)
T 2zs0_A 116 PTH 118 (140)
T ss_dssp GGG
T ss_pred HHH
Confidence 653
No 28
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=31.69 E-value=92 Score=24.51 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=45.0
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHH---HH-Hc-CCCcchHHHHHHHHHHH
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCE---YI-KR-GIEADNLEELYKKVHAA 245 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~---yi-k~-~~~p~~~e~~y~~~~~~ 245 (274)
|.-...||.++..+. -|++ .|-.++++. |..++..|. |++.....+++ -- .. ||+|+.++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (149)
T 1yhu_D 44 PDAVGLFGAVKGDEV-NSNEFKAHCIRVVNG-LDSSIGLLS--DPATLNEQLSHLATQHKARSGVTKGGFSAIAQSFLRV 119 (149)
T ss_dssp GGGGGGGGGGTSSST-TSHHHHHHHHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCC-CCHHHHHHHHHHHHH-HHHHHHHCC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 666667777543221 2443 555666554 667777774 66555544443 33 33 99999999888887777
Q ss_pred Hhc
Q 023961 246 IRA 248 (274)
Q Consensus 246 I~~ 248 (274)
|++
T Consensus 120 l~~ 122 (149)
T 1yhu_D 120 MPQ 122 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 29
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=30.82 E-value=13 Score=33.79 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=32.0
Q ss_pred hhhhhcccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcc
Q 023961 193 VHRKYIYCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEAD 233 (274)
Q Consensus 193 ~~~~ri~G~hva~Y~~~L~eed~e~yk~---qFS~yik~~~~p~ 233 (274)
++++. .+.-|.+..+.|.++|+|.|++ +|+..||.|+-.|
T Consensus 123 ~Irk~-l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~G~~eD 165 (263)
T 1y6z_A 123 IINKR-IVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVED 165 (263)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHccccccC
Confidence 33444 5678889999999999999986 8999999997644
No 30
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=30.59 E-value=19 Score=33.47 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.8
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcc
Q 023961 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEAD 233 (274)
Q Consensus 199 ~G~hva~Y~~~L~eed~e~yk~---qFS~yik~~~~p~ 233 (274)
.+.-|.++.+.|.++|+|.|++ +|+..||.|+--|
T Consensus 124 l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~eD 161 (303)
T 2gq0_A 124 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAED 161 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhcC
Confidence 5678899999999999998876 8999999997644
No 31
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=28.13 E-value=1.1e+02 Score=23.18 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=42.3
Q ss_pred cCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHh---hHHH-HHHcCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS---HFCE-YIKRGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~---qFS~-yik~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|.-...||. |-..|..++++ -|..++..|. |++.... +.++ ..+.||+|++++.+-+--...|++
T Consensus 36 P~~k~~F~~--------d~~~h~~~l~~-al~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~ 104 (131)
T 3ubc_A 36 PTVSVLFQN--------PISSQSRKLMQ-VLGILVQGID--NLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQE 104 (131)
T ss_dssp GGGGGGCCS--------CHHHHHHHHHH-HHHHHHHTGG--GGGGGHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHccc--------cHHHHHHHHHH-HHHHHHHhCC--ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 555566765 34556666654 6777888884 4554433 3333 346799999999888777777765
No 32
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=27.58 E-value=1e+02 Score=24.08 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=47.1
Q ss_pred cCCccccCCC-CCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 023961 173 PHSEKRFAGF-SKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIR 247 (274)
Q Consensus 173 Ph~~~~fp~~-~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~ 247 (274)
|.-..-||.+ |... =|++ .|..++++. |.+++..|. |-+.+-.+.+.--. .||+|++++.+-+-....|+
T Consensus 37 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~ 111 (142)
T 3d1k_A 37 PQTKIYFSHWPDVTP--GSPNIKAHGKKVMGG-IALAVSKID--DLKTGLMELSEQHAYKLRVDPSNFKILNHCILVVIS 111 (142)
T ss_dssp GGGGGGGTTSSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCC--CCHHHHHHHHHHHHH-HHHHHHhHH--HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 6666778865 3222 2333 555666653 777788774 35555556665433 59999999998888888887
Q ss_pred cC
Q 023961 248 AD 249 (274)
Q Consensus 248 ~~ 249 (274)
+.
T Consensus 112 ~~ 113 (142)
T 3d1k_A 112 TM 113 (142)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 33
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=26.59 E-value=41 Score=33.47 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=30.5
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcch
Q 023961 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEADN 234 (274)
Q Consensus 199 ~G~hva~Y~~~L~eed~e~yk~---qFS~yik~~~~p~~ 234 (274)
.++-|.++.+.|.++|+|.|++ +|+..||.|+--|.
T Consensus 352 l~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~ 390 (559)
T 1y4s_A 352 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDF 390 (559)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSTTTCG
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCH
Confidence 4677889999999999998876 89999999988654
No 34
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=26.45 E-value=99 Score=23.95 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=48.1
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|.-..-||.+|.++ =|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|++
T Consensus 37 P~~~~~F~~~d~~~--~~~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2w72_C 37 PTTKTYFPHFDLSH--GSAQVKGQGKKVAD-ALTNAVAHVD--DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--SHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66667888776543 2344 55555554 4666677664 45566666666443 699999999888888888876
Q ss_pred C
Q 023961 249 D 249 (274)
Q Consensus 249 ~ 249 (274)
.
T Consensus 112 ~ 112 (141)
T 2w72_C 112 H 112 (141)
T ss_dssp H
T ss_pred H
Confidence 4
No 35
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=25.50 E-value=98 Score=24.33 Aligned_cols=68 Identities=6% Similarity=0.117 Sum_probs=46.9
Q ss_pred cCCccccCCC-CCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGF-SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~-~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|..-.-||.+ |. ++..|..++++. |.+++..|.+ -+..-.+.|.--. .||+|++++-+-+-....|.+
T Consensus 36 P~~k~~F~~f~d~-----~~~~h~~~v~~a-l~~~v~~ld~--l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~ 106 (136)
T 1gcv_B 36 PWTNRYFQKRTDF-----RSSIHAGIVVGA-LQDAVKHMDD--VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAY 106 (136)
T ss_dssp GGGGGGTTTCTTC-----CHHHHHHHHHHH-HHHHHHTTTC--HHHHTHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcccCC-----CccHHHHHHHHH-HHHHHHhHhh--HHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 6666788865 32 223788887765 7788888863 4555556666443 699999998877766666654
No 36
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=24.45 E-value=84 Score=24.84 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=35.3
Q ss_pred HHHhcccChHHHHhhHHHHHHc---CCCcchHHHHHHHHHHHHhc
Q 023961 207 MRTLMEDEPEKYQSHFCEYIKR---GIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 207 ~~~L~eed~e~yk~qFS~yik~---~~~p~~~e~~y~~~~~~I~~ 248 (274)
|+.|.+++...|.+||.++... .+++++..++=+++++++.+
T Consensus 42 ~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 42 MEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6678888999999999998875 57788988888888888854
No 37
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=23.87 E-value=1.1e+02 Score=23.63 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=48.4
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|.-...||.+|.+. =|++ .|..++++ -|..++..|. |.+.+-.+.++--. .||+|+.++.+-+-....|++
T Consensus 38 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~-~l~~~v~~ld--~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~ll~~l~~ 112 (142)
T 1jeb_A 38 PQTKTYFPHFDLHP--GSAQLRAHGSKVVA-AVGDAVKSID--DIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAA 112 (142)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--CHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 66667888775543 2233 44555444 5677777774 46666677777553 699999999888888888875
No 38
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=23.07 E-value=1.2e+02 Score=24.02 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=45.1
Q ss_pred cCCccccCCC-CCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHH---H-HHc-CCCcchHHHHHHHHHH
Q 023961 173 PHSEKRFAGF-SKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCE---Y-IKR-GIEADNLEELYKKVHA 244 (274)
Q Consensus 173 Ph~~~~fp~~-~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~---y-ik~-~~~p~~~e~~y~~~~~ 244 (274)
|.-...||.+ |... =|++ .|..++++. |..++..|. |++.....+++ - ... ||+|++++.+-+-...
T Consensus 47 P~~k~~F~~~~~~~~--~n~~~~~h~~~v~~a-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~lgV~p~~f~~~~~~ll~ 121 (151)
T 1x9f_A 47 PTSKALFERVKIDEP--ESGEFKSHLVRVANG-LKLLINLLD--DTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFAR 121 (151)
T ss_dssp GGGGGGGTTTTTTST--TSSHHHHHHHHHHHH-HHHHHTTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCC--CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHH
Confidence 6666677765 2111 1333 566666664 777888774 66655554443 3 343 9999999988887777
Q ss_pred HHhc
Q 023961 245 AIRA 248 (274)
Q Consensus 245 ~I~~ 248 (274)
.|.+
T Consensus 122 ~l~~ 125 (151)
T 1x9f_A 122 VLPQ 125 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 39
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=22.61 E-value=1.1e+02 Score=23.94 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=46.5
Q ss_pred cCCccccCCC-CCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 023961 173 PHSEKRFAGF-SKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIR 247 (274)
Q Consensus 173 Ph~~~~fp~~-~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik--~~~~p~~~e~~y~~~~~~I~ 247 (274)
|.-..-||.+ |... =|++ .|..++++. |.+++..|. |-+.+-.+.+.--. .||+|++++.+-+-....|.
T Consensus 38 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~ 112 (143)
T 3bom_A 38 PQTKAYFSHWASVAP--GSAPVKKHGITIMNQ-IDDCVGHMD--DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIA 112 (143)
T ss_dssp GGGGGGCTTSSCCST--TCHHHHHHHHHHHHH-HHHHHTTTT--CHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCC--CCHHHHHHHHHHHHH-HHHHHHhHH--hHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHH
Confidence 6666778865 3222 2333 455666553 677777774 35555556665433 59999999988888888887
Q ss_pred cC
Q 023961 248 AD 249 (274)
Q Consensus 248 ~~ 249 (274)
+.
T Consensus 113 ~~ 114 (143)
T 3bom_A 113 AY 114 (143)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 40
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=22.61 E-value=1.1e+02 Score=26.81 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred cCCccccCCCCCCccCCCHH--hhhhhcccccHHHHHHHhcccChHHHHhhHHHHH-H-cCCCcchHHHHHHHHHHHHhc
Q 023961 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYI-K-RGIEADNLEELYKKVHAAIRA 248 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~ae--~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yi-k-~~~~p~~~e~~y~~~~~~I~~ 248 (274)
|.-...||.+|.++ =|++ .|..++++. |.+++..|.+ .+.+-.+.+.-- . .||+|+.++.+-+--...|++
T Consensus 37 P~~~~~F~~~~~~~--~n~~~~~h~~~v~~~-l~~~v~~ld~--l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (283)
T 1c7c_A 37 PTTKTYFPHFDLSH--GSAQVKGHGKKVADA-LTNAVAHVDD--MPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (283)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTGGG--HHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCC--CChHHHHHHHHHHHH-HHHHHHcccC--chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777888775543 3344 667777764 7788888853 555555666543 3 599999999888888888875
Q ss_pred C
Q 023961 249 D 249 (274)
Q Consensus 249 ~ 249 (274)
.
T Consensus 112 ~ 112 (283)
T 1c7c_A 112 H 112 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=21.69 E-value=37 Score=30.94 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.8
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcc
Q 023961 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEAD 233 (274)
Q Consensus 199 ~G~hva~Y~~~L~eed~e~yk~---qFS~yik~~~~p~ 233 (274)
...-|.+..+.|. +|+|.|++ +|+..||.|+--|
T Consensus 126 i~kkvl~~l~~la-~d~e~Y~~f~~~fg~~lK~G~~eD 162 (268)
T 3pry_A 126 IVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGIHED 162 (268)
T ss_dssp HHHHHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhHhhCC
Confidence 4677888999999 89998876 8899999997533
No 42
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=21.38 E-value=1.6e+02 Score=22.60 Aligned_cols=72 Identities=13% Similarity=0.317 Sum_probs=45.4
Q ss_pred cCCccccCCCCCCccCCCH--HhhhhhcccccHHHHHHHhcccChHHHHhhHHHH----HHcCCCcchHHHHHHHHHHHH
Q 023961 173 PHSEKRFAGFSKDSKQLDA--EVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEY----IKRGIEADNLEELYKKVHAAI 246 (274)
Q Consensus 173 Ph~~~~fp~~~~~~k~~~a--e~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~y----ik~~~~p~~~e~~y~~~~~~I 246 (274)
|.-...||.++..+ .=|+ ..|..++++. |..++..|. |++.....+++. ...||+|+.++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~-~~s~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 1x9f_D 40 PEIKAPFSRVRGDN-IYSPEFGAHSQRVLSG-LDITISMLD--TPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVL 115 (140)
T ss_dssp GGGGGGGGGGTTTC-TTSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCC-CCCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66666777653222 1234 3455666654 777888774 666555544443 334999999998888877777
Q ss_pred hc
Q 023961 247 RA 248 (274)
Q Consensus 247 ~~ 248 (274)
++
T Consensus 116 ~~ 117 (140)
T 1x9f_D 116 GD 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
Done!