BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023962
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 149/248 (60%), Gaps = 14/248 (5%)
Query: 30 PKLLNITMAESGSDWSPAGATWYGSPTXXXXXXXXXX-XXXXVEQAPFSALISAGGPSLY 88
P NIT +G W A ATWYG P V P+S + + G ++
Sbjct: 6 PPGXNITTNYNGK-WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIF 64
Query: 89 KSGKGCGACYQVKCTH-PECSGNPVTVVITDEC--PGGPCVSESVHFDLSGTAFGAMAIS 145
K GKGCG+CY+V+C PECSGNPVTV ITD P P HFDLSG AFG++A
Sbjct: 65 KDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAP-----YHFDLSGKAFGSLAKP 119
Query: 146 GKADQLRNVGVLQIQHRRVECNYP-GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDL 204
G D++R+ G++ ++ RRV C YP G +I FH++ G NPNY A L++Y DGD+ +++
Sbjct: 120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 179
Query: 205 QQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQ 264
Q L S W PM+ SWGA+W+++ L+ PFS+RLT +ESGK ++AK VIPA W+P
Sbjct: 180 QDKL--SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLT-SESGKKVIAKDVIPANWRPDA 236
Query: 265 TYRSLVNF 272
Y S V F
Sbjct: 237 VYTSNVQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 14/240 (5%)
Query: 34 NITMAESGSDWSPAGATWYGSPTXXXXXXXXXX-XXXXVEQAPFSALISAGGPSLYKSGK 92
NIT A G W A +TWYG PT V++ PFS + G ++KSG+
Sbjct: 10 NIT-ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGR 68
Query: 93 GCGACYQVKCTHPE-CSGNPVTVVITD--ECPGGPCVSESVHFDLSGTAFGAMAISGKAD 149
GCG+C+++KCT PE CSG PV V ITD E P P HFDLSG AFGAMA G
Sbjct: 69 GCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP-----YHFDLSGHAFGAMAKKGDEQ 123
Query: 150 QLRNVGVLQIQHRRVECNYP-GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQAL 208
+LR+ G L++Q RRV+C YP G ++ FHV+ GSNPNY A L++Y +GDGD+ +VD+++
Sbjct: 124 KLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK- 182
Query: 209 DSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
D W+ ++ SWGA+W+++ L PF++R T E G A+ VIP GW+ +Y S
Sbjct: 183 -GKDKWIELKESWGAIWRIDTPDKLTGPFTVRYT-TEGGTKTEAEDVIPEGWKADTSYES 240
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGS 231
++ F V+ GSN + A L++YE GD +A V+L++ SD W+ M + G VW +
Sbjct: 3 KVTFTVEKGSNEKHLAVLVKYE-GD-TMAEVELREH--GSDEWVAMTKGEGGVWTFDSEE 58
Query: 232 TLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTY 266
L+ PF+ R E G V V+P + G TY
Sbjct: 59 PLQGPFNFRF-LTEKGMKNVFDDVVPEKYTIGATY 92
>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|B Chain B, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|C Chain C, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT1|D Chain D, Crystal Structure Of Pollen Allergen Phl P 3
pdb|3FT9|A Chain A, X-Ray Crystal Structure Of Pollen Allergen - Phl P 3
Length = 100
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYG 230
+++ F V GS+P I+Y LA V+L+Q S+ W P+ + G VW++
Sbjct: 2 VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQ--HGSEEWEPLTKK-GNVWEVKSS 58
Query: 231 STLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYR 267
L PF+ R ++ G V VIP + G+TY+
Sbjct: 59 KPLVGPFNFRF-MSKGGMRNVFDEVIPTAFSIGKTYK 94
>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From
Timothy Grass Pollen
Length = 108
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYG 230
+++ F V GS+P I+Y LA V+L+Q S+ W P+ + G VW++
Sbjct: 13 VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQ--HGSEEWEPLTKK-GNVWEVKSS 69
Query: 231 STLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYR 267
L PF+ R ++ G V VIP + G+TY+
Sbjct: 70 KPLVGPFNFRF-MSKGGMRNVFDEVIPTAFSIGKTYK 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,680,651
Number of Sequences: 62578
Number of extensions: 353272
Number of successful extensions: 765
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 7
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)