Query 023962
Match_columns 274
No_of_seqs 144 out of 1062
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 3.6E-62 7.8E-67 439.9 26.5 223 40-273 21-247 (247)
2 PLN00050 expansin A; Provision 100.0 4.9E-61 1.1E-65 432.9 25.3 220 34-272 16-247 (247)
3 PLN00193 expansin-A; Provision 100.0 8.3E-61 1.8E-65 433.0 26.7 215 41-272 27-256 (256)
4 COG4305 Endoglucanase C-termin 100.0 1.8E-28 3.8E-33 208.4 18.3 197 43-273 29-231 (232)
5 PLN03024 Putative EG45-like do 99.9 1.3E-25 2.8E-30 184.1 12.9 98 45-163 22-125 (125)
6 PLN00115 pollen allergen group 99.9 4.5E-24 9.7E-29 173.1 12.1 94 171-272 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 8.5E-23 1.8E-27 156.2 10.3 81 173-257 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 7.5E-22 1.6E-26 152.6 6.7 75 80-161 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.7 2.8E-18 6.1E-23 129.4 6.3 71 80-161 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 4.2E-11 9.2E-16 95.9 5.0 64 90-166 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.6 4.7E-07 1E-11 73.9 9.1 74 75-165 40-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.5 0.0013 2.9E-08 58.4 10.8 96 47-169 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.3 0.00091 2E-08 60.3 7.3 61 93-167 118-178 (233)
14 PRK10672 rare lipoprotein A; P 96.6 0.028 6.1E-07 53.9 11.9 94 46-166 80-173 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.1 0.1 2.2E-06 46.3 3.6 55 80-138 70-124 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 64.7 10 0.00022 31.3 4.0 19 198-218 42-60 (131)
17 cd02110 SO_family_Moco_dimer S 57.9 21 0.00046 33.7 5.4 49 197-249 236-293 (317)
18 PF12863 DUF3821: Domain of un 50.0 1E+02 0.0022 27.7 8.1 96 130-252 48-146 (209)
19 cd02854 Glycogen_branching_enz 38.3 87 0.0019 24.3 5.3 49 199-251 16-76 (99)
20 cd02114 bact_SorA_Moco sulfite 38.0 70 0.0015 31.0 5.6 51 196-249 287-345 (367)
21 cd02113 bact_SoxC_Moco bacteri 37.4 52 0.0011 31.4 4.6 50 196-249 237-294 (326)
22 cd02859 AMPKbeta_GBD_like AMP- 28.6 2.4E+02 0.0052 20.7 6.0 49 198-253 11-62 (79)
23 COG2372 CopC Uncharacterized p 28.0 1E+02 0.0022 25.6 4.2 28 152-179 97-126 (127)
24 PLN00177 sulfite oxidase; Prov 27.3 1.6E+02 0.0034 28.9 6.1 19 198-218 297-315 (393)
25 PRK10301 hypothetical protein; 25.4 1.1E+02 0.0024 24.8 4.0 26 152-178 96-124 (124)
26 cd02111 eukary_SO_Moco molybdo 23.8 2.1E+02 0.0046 27.7 6.2 20 197-218 276-295 (365)
27 PF15339 Afaf: Acrosome format 23.6 47 0.001 29.1 1.5 23 8-31 135-157 (200)
28 PF09710 Trep_dent_lipo: Trepo 22.7 39 0.00084 32.7 0.9 16 12-27 5-20 (394)
29 PF04234 CopC: CopC domain; I 20.7 1.1E+02 0.0024 23.4 3.0 26 152-178 69-97 (97)
30 TIGR02588 conserved hypothetic 20.0 1.6E+02 0.0034 24.3 3.8 69 172-243 35-118 (122)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=3.6e-62 Score=439.92 Aligned_cols=223 Identities=35% Similarity=0.714 Sum_probs=203.7
Q ss_pred CCCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-CCCCCCCCEEEEEee
Q 023962 40 SGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITD 118 (274)
Q Consensus 40 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~~~c~~~sv~V~V~D 118 (274)
..++|.+++|||||++++.|+++|||||++ ...+.++..+||++ ++|++|++||+||||+|. +..|.+++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence 556799999999999999899999999999 66667888999998 999999999999999998 678999999999999
Q ss_pred cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCC-CceEEEEEEEecCCC
Q 023962 119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN-PNYFATLIEYEDGDG 197 (274)
Q Consensus 119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs-~~w~av~v~n~~~~~ 197 (274)
.||. + +.|||||.+||.+||.++++++|+..|+++|+||||||.++|.+|+|+|+++|+ ++|++|+|.|+++++
T Consensus 99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G 173 (247)
T PLN03023 99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN 173 (247)
T ss_pred CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence 9985 4 489999999999999999999999999999999999999998789999999996 999999999999999
Q ss_pred CeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEc-cCCeE-EEEccccCCCCCCCcEEeCCCCCC
Q 023962 198 DLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAA-ESGKA-LVAKGVIPAGWQPGQTYRSLVNFT 273 (274)
Q Consensus 198 ~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~-~~G~~-vv~~~vip~~~~~G~~y~t~~QF~ 273 (274)
+|++||||+++ +..|++|+|+||++|+++. ++++||+||++.. .+|++ |+++||||++|++|++|++++||.
T Consensus 174 dI~~V~Ik~~~--~~~W~~M~rnwGa~W~~~~--~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 174 DILAVEIWQED--CKEWRGMRKAYGAVWDMPN--PPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247 (247)
T ss_pred cEEEEEEEecC--CCCceECccCCcceeEcCC--CCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence 99999999976 5789999999999999976 6889887777541 36654 889999999999999999999995
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=4.9e-61 Score=432.89 Aligned_cols=220 Identities=33% Similarity=0.715 Sum_probs=201.1
Q ss_pred ccccccCCCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc--CCCCCCCC
Q 023962 34 NITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT--HPECSGNP 111 (274)
Q Consensus 34 ~~~~~~~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~--~~~c~~~s 111 (274)
+|+ +.+.++|..++|||||++++.++++|||||++ +..++++.++||+|+.+|++|+.||+||||+|. +..|.+++
T Consensus 16 ~~~-~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gs 93 (247)
T PLN00050 16 KIV-EGYGSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGS 93 (247)
T ss_pred eec-cccCCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCc
Confidence 554 45677999999999999998888999999999 566788999999999999999999999999996 35798889
Q ss_pred EEEEEeecCCC---------CCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCC
Q 023962 112 VTVVITDECPG---------GPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN 182 (274)
Q Consensus 112 v~V~V~D~Cp~---------~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs 182 (274)
|+|+|||+||+ +||.+++.|||||.+||.+|+. ...|+++|+||+|||+++| ||+|+++++
T Consensus 94 V~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~-- 163 (247)
T PLN00050 94 IIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH-- 163 (247)
T ss_pred EEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC--
Confidence 99999999996 3898889999999999999998 6889999999999999998 999999864
Q ss_pred CceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCC-CeEEEEEEccCCeEEEEccccCCCCC
Q 023962 183 PNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRA-PFSLRLTAAESGKALVAKGVIPAGWQ 261 (274)
Q Consensus 183 ~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~lRiT~~~~G~~vv~~~vip~~~~ 261 (274)
+||++++|.|+++.++|++|+|++++ ..|++|+|+||++|+++.. +.+ ||+||||+ .+|+++++.||||++|+
T Consensus 164 sy~~~vlv~nv~G~gdi~~V~ikg~~---~~W~~M~R~wGa~W~~~~~--l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~ 237 (247)
T PLN00050 164 SYFNLVLITNVGGAGDIVAVSIKGSK---SNWQAMSRNWGQNWQSNSY--LNGQALSFKVTT-SDGRTVISNNAAPSNWA 237 (247)
T ss_pred ceeEEEEEEEcCCCccEEEEEEecCC---CCeeECccccCceeEccCC--CCCCcEEEEEEe-cCCcEEEECceeCCCCC
Confidence 49999999999999999999999975 5899999999999999873 555 99999999 99999999999999999
Q ss_pred CCcEEeCCCCC
Q 023962 262 PGQTYRSLVNF 272 (274)
Q Consensus 262 ~G~~y~t~~QF 272 (274)
+|++|++. ||
T Consensus 238 ~G~ty~~~-~f 247 (247)
T PLN00050 238 FGQTYTGM-QF 247 (247)
T ss_pred CCCeEecC-cC
Confidence 99999995 98
No 3
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=8.3e-61 Score=433.01 Aligned_cols=215 Identities=33% Similarity=0.694 Sum_probs=197.6
Q ss_pred CCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc----CCCCCC-CCEEEE
Q 023962 41 GSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT----HPECSG-NPVTVV 115 (274)
Q Consensus 41 ~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~----~~~c~~-~sv~V~ 115 (274)
.++|.+++|||||++++.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|. ++.|.+ ++|+|+
T Consensus 27 ~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 27 PSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 34899999999999988888999999998 556788999999999999999999999999994 457854 599999
Q ss_pred EeecCCC---------CCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceE
Q 023962 116 ITDECPG---------GPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYF 186 (274)
Q Consensus 116 V~D~Cp~---------~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~ 186 (274)
|||+||+ .||.+++.|||||.+||.+|+. ...|+++|+||+|+|+++| ||+|+++ +++||+
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~~ 175 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYFE 175 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccEE
Confidence 9999996 2798888999999999999997 5899999999999999998 9999998 389999
Q ss_pred EEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCC-CeEEEEEEccCCeEEEEccccCCCCCCCcE
Q 023962 187 ATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRA-PFSLRLTAAESGKALVAKGVIPAGWQPGQT 265 (274)
Q Consensus 187 av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~lRiT~~~~G~~vv~~~vip~~~~~G~~ 265 (274)
+|+|.|++++++|++|+||+++ ..|++|+|+||++|+++. .+.+ ||+||||+ .+|+++++.||||++|++|++
T Consensus 176 ~vlv~nv~G~gdV~~v~Ik~~~---~~W~~M~R~wGa~W~~~~--~l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~t 249 (256)
T PLN00193 176 LVLISNVGGAGSIQSVSIKGSK---TGWMAMSRNWGANWQSNA--YLDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQT 249 (256)
T ss_pred EEEEEEeCCCccEEEEEEecCC---CCeeECcccccceeEecC--CCCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCe
Confidence 9999999999999999999975 589999999999999987 3565 99999999 999999999999999999999
Q ss_pred EeCCCCC
Q 023962 266 YRSLVNF 272 (274)
Q Consensus 266 y~t~~QF 272 (274)
|++.+||
T Consensus 250 y~s~vqf 256 (256)
T PLN00193 250 FSSSVQF 256 (256)
T ss_pred EecCccC
Confidence 9999998
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=208.45 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=164.2
Q ss_pred CeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCC----CCCCCcEEEEEEcCCCCCCCCEEEEEee
Q 023962 43 DWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKS----GKGCGACYQVKCTHPECSGNPVTVVITD 118 (274)
Q Consensus 43 ~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~----g~~CG~C~eV~c~~~~c~~~sv~V~V~D 118 (274)
+-++|.|||-+... .+||-.. ++.+.+..|.|+|..+-+- .+.-|+.+||.+ +++.++|.|+|
T Consensus 29 ~~f~G~ATyTgsGY----sGGAflL----DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----PKG~TTVYVTD 95 (232)
T COG4305 29 DLFEGYATYTGSGY----SGGAFLL----DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----PKGKTTVYVTD 95 (232)
T ss_pred cccceeEEEecccc----cCceEEe----cCcCCcceeeecCHHHcccCCchhhhccceEEEEC-----CCCceEEEEec
Confidence 34699999987753 3677633 4556788999999987764 378999999998 89999999999
Q ss_pred cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceEEEEEEEecCCCC
Q 023962 119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGD 198 (274)
Q Consensus 119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~av~v~n~~~~~~ 198 (274)
.-|+ -. .+.||||+.||.+|.+ +.+|+++|+||.|+-|..| |+.+++|+||+.||.+|||+||.. |
T Consensus 96 lYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~y--P 161 (232)
T COG4305 96 LYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHKY--P 161 (232)
T ss_pred cccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeecccC--c
Confidence 9998 33 5899999999999998 7999999999999999999 999999999999999999999975 9
Q ss_pred eeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEc-cccCCCCCCCc-EEeCCCCCC
Q 023962 199 LASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAK-GVIPAGWQPGQ-TYRSLVNFT 273 (274)
Q Consensus 199 I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~-~vip~~~~~G~-~y~t~~QF~ 273 (274)
|.++|+.+.+ .|..|.+.+||.|.-.+ ..++|+.+|+|+ +-|+.++.. -.+|..-++-. +....+||+
T Consensus 162 V~KlE~~qdg----~WinlpK~dYNhFVgT~--LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 162 VMKLEYEQDG----KWINLPKMDYNHFVGTN--LGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred eEEEEEecCC----eEeeccccccceeeccc--cCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence 9999999974 89999999999887554 567899999999 999999875 24444332211 235678885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.93 E-value=1.3e-25 Score=184.12 Aligned_cols=98 Identities=40% Similarity=0.760 Sum_probs=83.7
Q ss_pred eeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-C-----CCCCCCCEEEEEee
Q 023962 45 SPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-H-----PECSGNPVTVVITD 118 (274)
Q Consensus 45 ~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~-----~~c~~~sv~V~V~D 118 (274)
.+|+||||+..+ .||| |+. .+++.++||+++.+|++|+.||+||||+|. + ..|++++|+|+|+|
T Consensus 22 ~~G~AT~Y~~~~-----~gAC-~~~----~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD 91 (125)
T PLN03024 22 TPGIATFYTSYT-----PSAC-YRG----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVD 91 (125)
T ss_pred cceEEEEeCCCC-----Cccc-cCC----CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEc
Confidence 469999998743 5899 444 136789999999999999999999999996 2 36899999999999
Q ss_pred cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEE
Q 023962 119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRR 163 (274)
Q Consensus 119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~ 163 (274)
+||+. |. .|||||++||.+|++ .+.|+++|+|.+
T Consensus 92 ~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 92 HCPSG-CA---STLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CCCCC-CC---CceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 99941 75 599999999999998 588999999963
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.91 E-value=4.5e-24 Score=173.12 Aligned_cols=94 Identities=22% Similarity=0.518 Sum_probs=86.5
Q ss_pred ceEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcE-EccCCCCceEEECCCCCCCCCeEEEEEEccCCeE
Q 023962 171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWL-PMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKA 249 (274)
Q Consensus 171 ~ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~-~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~ 249 (274)
.+|.|+|++||+++||++.+ | ++|.+|||++.+ +..|+ +|+|+||++|+++.+.+++|||+||+|+ .+|++
T Consensus 24 ~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g--~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~ 95 (118)
T PLN00115 24 TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKG--AKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGY 95 (118)
T ss_pred CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecC--CCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCE
Confidence 48999999999999998765 3 269999999997 67999 9999999999998765789999999999 99999
Q ss_pred EEEccccCCCCCCCcEEeCCCCC
Q 023962 250 LVAKGVIPAGWQPGQTYRSLVNF 272 (274)
Q Consensus 250 vv~~~vip~~~~~G~~y~t~~QF 272 (274)
++++||||++|++|++|++++||
T Consensus 96 ~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 96 RVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.89 E-value=8.5e-23 Score=156.16 Aligned_cols=81 Identities=44% Similarity=0.923 Sum_probs=68.2
Q ss_pred EEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccC-CeEEE
Q 023962 173 IAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAES-GKALV 251 (274)
Q Consensus 173 i~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~-G~~vv 251 (274)
|+|+|+++|++||++|+|.|+++.++|++|||++++ +.+|++|+|+||++|+++. +++.+||+||||+ .+ |++++
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~--s~~W~~m~r~wGa~W~~~~-~~~~~pls~Rvts-~~~G~~vv 76 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSG--SGNWIPMKRSWGAVWQIDS-NPPGGPLSFRVTS-GDSGQTVV 76 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETT--SSS-EE-EEECTTEEEEE--SS--SSEEEEEEE-TTTSEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCC--CCCceEeecCcCceEEECC-CCcCCCEEEEEEE-cCCCeEEE
Confidence 689999999999999999999999999999999998 6789999999999999986 4788999999999 66 99999
Q ss_pred EccccC
Q 023962 252 AKGVIP 257 (274)
Q Consensus 252 ~~~vip 257 (274)
++||||
T Consensus 77 ~~nViP 82 (82)
T PF01357_consen 77 ADNVIP 82 (82)
T ss_dssp EEEEE-
T ss_pred EecccC
Confidence 999998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.85 E-value=7.5e-22 Score=152.57 Aligned_cols=75 Identities=33% Similarity=0.681 Sum_probs=67.3
Q ss_pred EEEeCccccCCCCCCCcEEEEEEc--CCCCCC-CCEEEEEeecCCCC---------CCCCCCceEEeChhhhhhhhccCc
Q 023962 80 ISAGGPSLYKSGKGCGACYQVKCT--HPECSG-NPVTVVITDECPGG---------PCVSESVHFDLSGTAFGAMAISGK 147 (274)
Q Consensus 80 ~aA~s~~~y~~g~~CG~C~eV~c~--~~~c~~-~sv~V~V~D~Cp~~---------~C~~~~~~~DLs~~AF~~la~~~~ 147 (274)
+||+|+.+|++|++||+||||+|. +..|.+ ++|+|+|+|+||++ ||.+++.|||||.+||.+|+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 479999999999999999999996 457864 59999999999973 798778999999999999998
Q ss_pred ccccccCcEEEEEE
Q 023962 148 ADQLRNVGVLQIQH 161 (274)
Q Consensus 148 ~~~~~~~G~~~I~w 161 (274)
.+.|+++|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 5899999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.74 E-value=2.8e-18 Score=129.37 Aligned_cols=71 Identities=42% Similarity=0.890 Sum_probs=60.5
Q ss_pred EEEeCccccCCCCCCCcEEEEEEc---CCC--CCC--CCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccc
Q 023962 80 ISAGGPSLYKSGKGCGACYQVKCT---HPE--CSG--NPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLR 152 (274)
Q Consensus 80 ~aA~s~~~y~~g~~CG~C~eV~c~---~~~--c~~--~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~ 152 (274)
+||++..+|++|..||+||+++|. ... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+. .
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence 589999999999999999999993 322 665 9999999999999 98 4899999999999998 5
Q ss_pred cCcEEEEEE
Q 023962 153 NVGVLQIQH 161 (274)
Q Consensus 153 ~~G~~~I~w 161 (274)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 899999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.15 E-value=4.2e-11 Score=95.89 Aligned_cols=64 Identities=33% Similarity=0.617 Sum_probs=46.9
Q ss_pred CCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEee
Q 023962 90 SGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVEC 166 (274)
Q Consensus 90 ~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C 166 (274)
+...||+|++||.+ -.+.+++|+|||+|+. ++|||.+.+|++|-.+|++ ...|.+.|+|++|+|
T Consensus 56 gq~~CGkClrVTNt---~tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNT---ATGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-T---TT--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred CcccccceEEEEec---CCCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence 45789999999974 2578999999999986 5899999999999765443 578999999999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.55 E-value=4.7e-07 Score=73.86 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=52.1
Q ss_pred CCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccC
Q 023962 75 PFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNV 154 (274)
Q Consensus 75 p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~ 154 (274)
|...+|.+...--+-++..||.|+|++. ++++|.|..+|.-. +.|+|+.+||++|.+ |++ ...
T Consensus 40 p~Fp~IGg~~~V~gWnS~~CGtC~~lty-----~g~si~vlaID~a~--------~gfnis~~A~n~LT~-g~a---~~l 102 (119)
T PF07249_consen 40 PNFPYIGGAPAVAGWNSPNCGTCWKLTY-----NGRSIYVLAIDHAG--------GGFNISLDAMNDLTN-GQA---VEL 102 (119)
T ss_dssp TTTTSEEEETT--STT-TTTT-EEEEEE-----TTEEEEEEEEEE-S--------SSEEE-HHHHHHHHT-S-C---CCC
T ss_pred CCCCeeccccccccCCCCCCCCeEEEEE-----CCeEEEEEEEecCC--------CcccchHHHHHHhcC-Ccc---cce
Confidence 3345677776544336789999999997 78999999999954 359999999999997 444 467
Q ss_pred cEEEEEEEEEe
Q 023962 155 GVLQIQHRRVE 165 (274)
Q Consensus 155 G~~~I~w~~V~ 165 (274)
|+|+++|++|+
T Consensus 103 G~V~a~~~qV~ 113 (119)
T PF07249_consen 103 GRVDATYTQVD 113 (119)
T ss_dssp -EEE-EEEEE-
T ss_pred eEEEEEEEEcC
Confidence 99999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.48 E-value=0.0013 Score=58.39 Aligned_cols=96 Identities=24% Similarity=0.229 Sum_probs=69.2
Q ss_pred EEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCC
Q 023962 47 AGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCV 126 (274)
Q Consensus 47 G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~ 126 (274)
|.|+|||..-. | ..-|+|-.- + ...++||-.+ .-.|..++|+.. -++++|+|+|.|++|- .
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y--~---~~~~tAAHkt------LPlgT~V~VtNl---~ngrsviVrVnDRGPf---~ 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY--N---MKALTAAHKT------LPFNTYVKVTNL---HNNRSVIVRINDRGPF---S 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec--C---CCcccccccc------CCCCCEEEEEEC---CCCCEEEEEEeCCCCC---C
Confidence 67999987311 0 123443322 1 1245666432 378999999974 2589999999999996 2
Q ss_pred CCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCC
Q 023962 127 SESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYP 169 (274)
Q Consensus 127 ~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~ 169 (274)
. ..-+|||..|+.+|.- ...|+.+|+.+.+.....
T Consensus 62 ~-gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 D-DRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred C-CCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 2 3689999999999987 689999999999988653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.00091 Score=60.34 Aligned_cols=61 Identities=25% Similarity=0.276 Sum_probs=51.7
Q ss_pred CCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962 93 GCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECN 167 (274)
Q Consensus 93 ~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~ 167 (274)
-=|.-++||..+ ++++|+|+|.|++| +..+ ..||||..|+++|.- .+.|+.+|..+.+.+.
T Consensus 118 P~~t~v~VtNl~---NgrsvvVRINDRGP---f~~g-RiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 118 PLPTYVRVTNLD---NGRSVVVRINDRGP---FVSG-RIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCCEEEEEEcc---CCcEEEEEEeCCCC---CCCC-cEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 356788998753 68999999999999 5544 589999999999987 6899999999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=96.63 E-value=0.028 Score=53.93 Aligned_cols=94 Identities=22% Similarity=0.156 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCC
Q 023962 46 PAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPC 125 (274)
Q Consensus 46 ~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C 125 (274)
.|.|+|||..-.. ..-|.|-.. + ...+.||-.+ .--|..++|+... ++++|+|+|.|++|-
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge~~--~---~~~~tAAH~t------LPlps~vrVtNl~---ngrsvvVrVnDRGP~--- 140 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGERF--D---PNALTAAHPT------LPIPSYVRVTNLA---NGRMIVVRINDRGPY--- 140 (361)
T ss_pred EEEEEEeCCccCC--CcCcCceee--c---CCcCeeeccC------CCCCCEEEEEECC---CCcEEEEEEeCCCCC---
Confidence 7888888864210 012222111 1 1245666433 3678899999742 689999999999996
Q ss_pred CCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEee
Q 023962 126 VSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVEC 166 (274)
Q Consensus 126 ~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C 166 (274)
.. ..-||||..|+++|.- ...+.+.|+.-.|.=
T Consensus 141 ~~-gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v~~ 173 (361)
T PRK10672 141 GP-GRVIDLSRAAADRLNT-------SNNTKVRIDPIIVAP 173 (361)
T ss_pred CC-CCeeEcCHHHHHHhCC-------CCCceEEEEEEeeCC
Confidence 22 3689999999999986 355777777766633
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.10 E-value=0.1 Score=46.33 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=33.6
Q ss_pred EEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhh
Q 023962 80 ISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTA 138 (274)
Q Consensus 80 ~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~A 138 (274)
+||.+-.-..+...|++|||++=++..-++|+.+|+|++.=-+ -..+||||..+-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~d----lg~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPLKGKKMIVQVTNTGGD----LGSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TT----TTTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCcCCCEeEEEecccCCC----CCCCeEEEEeCC
Confidence 4555422223347899999999874445789999999998543 125899998543
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=64.73 E-value=10 Score=31.33 Aligned_cols=19 Identities=16% Similarity=0.393 Sum_probs=15.1
Q ss_pred CeeEEEEeecCCCCCCcEEcc
Q 023962 198 DLASVDLQQALDSSDSWLPMQ 218 (274)
Q Consensus 198 ~I~sVeI~~~g~~~~~W~~m~ 218 (274)
+|.+|||..++ +.+|++..
T Consensus 42 ~I~rVEVS~Dg--G~tW~~A~ 60 (131)
T PF03404_consen 42 GIARVEVSTDG--GKTWQEAT 60 (131)
T ss_dssp -EEEEEEESST--TSSEEE-E
T ss_pred ceEEEEEEeCC--CCCcEEeE
Confidence 79999999998 67899755
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=57.92 E-value=21 Score=33.73 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCeeEEEEeecCCCCCCcEEccCCCC-------ceEEECCCCCCCC--CeEEEEEEccCCeE
Q 023962 197 GDLASVDLQQALDSSDSWLPMQRSWG-------AVWKLNYGSTLRA--PFSLRLTAAESGKA 249 (274)
Q Consensus 197 ~~I~sVeI~~~g~~~~~W~~m~r~~g-------~~W~~~~~~~~~g--p~~lRiT~~~~G~~ 249 (274)
.+|++|||..++ +.+|++..-... -.|+++-. +..+ -+.+|.|| ..|++
T Consensus 236 ~~I~rVEvS~Dg--G~tW~~A~l~~~~~~~~~W~~W~~~~~-~~~G~~~l~vRA~D-~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDG--GRTWQEARLEGPLAGPRAWRQWELDWD-LPPGEYELVARATD-STGNV 293 (317)
T ss_pred CCEEEEEEEeCC--CCcceEeEccCCcCCCCEEEEEEEEEE-cCCCcEEEEEEEEC-CCCCc
Confidence 479999999998 669997654221 14666532 2344 66777788 77764
No 18
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=49.98 E-value=1e+02 Score=27.71 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred ceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCC
Q 023962 130 VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALD 209 (274)
Q Consensus 130 ~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~ 209 (274)
.+|.+++++|..-.+. |..-+=...+ .+.|.|++.+ ++|.|.+.....+|..-.|....
T Consensus 48 ~~FyV~P~~f~~~tG~---------------WY~~~~~~~~-~~aF~V~~Ps----l~l~v~d~~t~~dvt~~~V~~G~- 106 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTGN---------------WYQWNGTPKG-DVAFYVQDPS----LSLKVWDANTDKDVTGKTVPRGD- 106 (209)
T ss_pred cCEEEChHHhCCcccc---------------eEecCCCCCc-ceEEEEeCCc----eEEEEEeccccccccCceeccCC-
Confidence 5899999999654331 3222222222 6899999874 77888776544444433333322
Q ss_pred CCCCcEEccCCCCceEEE-CCCC--CCCCCeEEEEEEccCCeEEEE
Q 023962 210 SSDSWLPMQRSWGAVWKL-NYGS--TLRAPFSLRLTAAESGKALVA 252 (274)
Q Consensus 210 ~~~~W~~m~r~~g~~W~~-~~~~--~~~gp~~lRiT~~~~G~~vv~ 252 (274)
.-+++- +-|.+.+ .+++ ...++++|+|++ -+|.+.+.
T Consensus 107 -~v~FrI----~tNL~~~~~R~g~~~~~~~v~I~V~~-P~G~~~t~ 146 (209)
T PF12863_consen 107 -NVNFRI----DTNLYSIFQRGGYTPGDGPVDIKVTT-PSGATYTS 146 (209)
T ss_pred -eEEEEE----cccHHHHhhcCCCCCCcceEEEEEeC-CCCcEEEE
Confidence 111211 1122211 1111 223469999998 88887664
No 19
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=38.32 E-value=87 Score=24.34 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=33.2
Q ss_pred eeEEEEeecCCCCCCcE----EccCCCCceEEECCCCC-------CCC-CeEEEEEEccCCeEEE
Q 023962 199 LASVDLQQALDSSDSWL----PMQRSWGAVWKLNYGST-------LRA-PFSLRLTAAESGKALV 251 (274)
Q Consensus 199 I~sVeI~~~g~~~~~W~----~m~r~~g~~W~~~~~~~-------~~g-p~~lRiT~~~~G~~vv 251 (274)
-++|+|.++- ..|. +|.|...-+|++.-... ..+ .+.+||+. .+|+++.
T Consensus 16 A~~V~l~GdF---n~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~-~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDF---NNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVT-PSGEWID 76 (99)
T ss_pred CCEEEEEccC---CCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEe-CCCCEEE
Confidence 5677887664 4675 48887666897753211 233 89999998 7888754
No 20
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=37.98 E-value=70 Score=30.98 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCCeeEEEEeecCCCCCCcEEcc--CCCCc----eEEECCCCCCCC--CeEEEEEEccCCeE
Q 023962 196 DGDLASVDLQQALDSSDSWLPMQ--RSWGA----VWKLNYGSTLRA--PFSLRLTAAESGKA 249 (274)
Q Consensus 196 ~~~I~sVeI~~~g~~~~~W~~m~--r~~g~----~W~~~~~~~~~g--p~~lRiT~~~~G~~ 249 (274)
...|++|||..++ +.+|+... ...+. .|++.=..+..+ -+.+|.|| ..|++
T Consensus 287 ~~~I~rVEVS~Dg--G~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G~~ 345 (367)
T cd02114 287 GSGIRRVDVSADG--GDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDGQT 345 (367)
T ss_pred CCCEEEEEEEeCC--CCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCCCC
Confidence 3579999999998 67999654 22222 365542101234 56667777 66754
No 21
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=37.42 E-value=52 Score=31.37 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCCeeEEEEeecCCCCCCcEEccCC--C--C--ceEEECCCCCCCC--CeEEEEEEccCCeE
Q 023962 196 DGDLASVDLQQALDSSDSWLPMQRS--W--G--AVWKLNYGSTLRA--PFSLRLTAAESGKA 249 (274)
Q Consensus 196 ~~~I~sVeI~~~g~~~~~W~~m~r~--~--g--~~W~~~~~~~~~g--p~~lRiT~~~~G~~ 249 (274)
.++|.+|||..++ +.+|+...-. . + --|.+.=. +..+ -+..|.|| ..|++
T Consensus 237 ~~~I~rVEVS~Dg--G~tW~~A~l~~~~~~~aW~~w~~~w~-~~~g~~~i~~RA~D-~~G~~ 294 (326)
T cd02113 237 RGRIRRVDVSFDG--GRTWQDARLEGPVLPKALTRFRLPWK-WDGRPAVLQSRATD-ETGYV 294 (326)
T ss_pred CCCEEEEEEEcCC--CCCceECccCCCCCCCceEEEeEEEE-cCCCeEEEEEEEEc-CCCCC
Confidence 4569999999998 6799975432 1 1 12333211 2223 56667787 66654
No 22
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=28.57 E-value=2.4e+02 Score=20.70 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=34.3
Q ss_pred CeeEEEEeecCCCCCCcE---EccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEc
Q 023962 198 DLASVDLQQALDSSDSWL---PMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAK 253 (274)
Q Consensus 198 ~I~sVeI~~~g~~~~~W~---~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~ 253 (274)
+-++|+|.++= ..|+ +|.|.... |.+.-. .+.+.+.+|+.. +|+++...
T Consensus 11 ~a~~V~v~G~F---~~W~~~~pm~~~~~~-~~~~~~-L~~g~y~YkF~V--dg~w~~d~ 62 (79)
T cd02859 11 GGKEVYVTGSF---DNWKKKIPLEKSGKG-FSATLR-LPPGKYQYKFIV--DGEWRHSP 62 (79)
T ss_pred CCcEEEEEEEc---CCCCccccceECCCC-cEEEEE-cCCCCEEEEEEE--CCEEEeCC
Confidence 45899999873 5676 48887655 766543 445788888877 78887664
No 23
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=28.05 E-value=1e+02 Score=25.60 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=22.8
Q ss_pred ccCcEEEEEEEEEeecC--CCceEEEEEec
Q 023962 152 RNVGVLQIQHRRVECNY--PGMRIAFHVDS 179 (274)
Q Consensus 152 ~~~G~~~I~w~~V~C~~--~g~ni~~~vk~ 179 (274)
+..|.+-++||.|+-+. .++++.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 78999999999999984 23388888864
No 24
>PLN00177 sulfite oxidase; Provisional
Probab=27.27 E-value=1.6e+02 Score=28.90 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.3
Q ss_pred CeeEEEEeecCCCCCCcEEcc
Q 023962 198 DLASVDLQQALDSSDSWLPMQ 218 (274)
Q Consensus 198 ~I~sVeI~~~g~~~~~W~~m~ 218 (274)
+|++|||..++ +.+|+...
T Consensus 297 ~I~rVEVS~Dg--G~tW~~A~ 315 (393)
T PLN00177 297 GIERVDISVDG--GKTWVEAS 315 (393)
T ss_pred cEEEEEEEcCC--CCCceeee
Confidence 69999999998 67999654
No 25
>PRK10301 hypothetical protein; Provisional
Probab=25.35 E-value=1.1e+02 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.8
Q ss_pred ccCcEEEEEEEEEeecC---CCceEEEEEe
Q 023962 152 RNVGVLQIQHRRVECNY---PGMRIAFHVD 178 (274)
Q Consensus 152 ~~~G~~~I~w~~V~C~~---~g~ni~~~vk 178 (274)
+..|.+.|+||.|+=+. .| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 57899999999999874 34 6777764
No 26
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=23.80 E-value=2.1e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=16.8
Q ss_pred CCeeEEEEeecCCCCCCcEEcc
Q 023962 197 GDLASVDLQQALDSSDSWLPMQ 218 (274)
Q Consensus 197 ~~I~sVeI~~~g~~~~~W~~m~ 218 (274)
.+|++|||..++ +.+|+...
T Consensus 276 ~~I~rVEVS~Dg--G~tW~~A~ 295 (365)
T cd02111 276 RKIVRVDVSLDG--GRTWKVAE 295 (365)
T ss_pred CcEEEEEEECCC--CCcceeCC
Confidence 379999999998 67999754
No 27
>PF15339 Afaf: Acrosome formation-associated factor
Probab=23.58 E-value=47 Score=29.09 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHhhccccccCCc
Q 023962 8 PISFFTLVFMFPLFLHSCWCFNPK 31 (274)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (274)
-|+++||++|++||.+ |++-+-|
T Consensus 135 GIsLmTl~lfv~Ll~~-c~atlyk 157 (200)
T PF15339_consen 135 GISLMTLFLFVILLAF-CSATLYK 157 (200)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3788999999998877 4444333
No 28
>PF09710 Trep_dent_lipo: Treponema clustered lipoprotein (Trep_dent_lipo); InterPro: IPR019122 This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=22.71 E-value=39 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.637 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhccccc
Q 023962 12 FTLVFMFPLFLHSCWC 27 (274)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (274)
|.+||||-+|||||+=
T Consensus 5 LIFILila~~LFSCsK 20 (394)
T PF09710_consen 5 LIFILILAAFLFSCSK 20 (394)
T ss_pred ehHHHHHHHHHhhcch
Confidence 4567888999999963
No 29
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=20.67 E-value=1.1e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=17.8
Q ss_pred ccCcEEEEEEEEEeecC---CCceEEEEEe
Q 023962 152 RNVGVLQIQHRRVECNY---PGMRIAFHVD 178 (274)
Q Consensus 152 ~~~G~~~I~w~~V~C~~---~g~ni~~~vk 178 (274)
+..|.+.|+||.|+=+. .| .+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 57899999999999653 23 5677664
No 30
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=20.00 E-value=1.6e+02 Score=24.34 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=40.4
Q ss_pred eEEEEEec----CCCCceEEEEEEEecCCCCeeEEEEeecCCCC--------CCcEEccCCC---CceEEECCCCCCCCC
Q 023962 172 RIAFHVDS----GSNPNYFATLIEYEDGDGDLASVDLQQALDSS--------DSWLPMQRSW---GAVWKLNYGSTLRAP 236 (274)
Q Consensus 172 ni~~~vk~----GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~--------~~W~~m~r~~---g~~W~~~~~~~~~gp 236 (274)
.+.+.+++ ...+||..+.|.|.++. ..++|+|.+.-... .+.--+.+.. | .+.+.++ |-++-
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg~-TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G-~~IF~~d-P~~g~ 111 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGGT-TAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENG-TLIFRSD-PRNGQ 111 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCCc-EEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeE-EEEEccC-cccCe
Confidence 45555433 23479999999999875 69999998653100 1111222221 3 3444443 45567
Q ss_pred eEEEEEE
Q 023962 237 FSLRLTA 243 (274)
Q Consensus 237 ~~lRiT~ 243 (274)
+.||+.+
T Consensus 112 L~irv~g 118 (122)
T TIGR02588 112 LRLRVAG 118 (122)
T ss_pred EEEEEEe
Confidence 8888876
Done!