Your job contains 1 sequence.
>023963
MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEY
NYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKL
LSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLP
ETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTC
CTFMKMKDNFFKGSPEKYAGVLYGLGVENGQISQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023963
(274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 1124 5.8e-114 1
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 1017 1.3e-102 1
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 877 8.6e-88 1
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 798 2.0e-79 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 749 3.1e-74 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 745 8.4e-74 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 745 8.4e-74 1
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 745 8.4e-74 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 745 8.4e-74 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 745 8.4e-74 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 745 8.4e-74 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 745 8.4e-74 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 745 8.4e-74 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 745 8.4e-74 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 745 8.4e-74 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 740 2.8e-73 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 738 4.6e-73 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 736 7.5e-73 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 735 9.6e-73 1
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 732 2.0e-72 1
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 722 2.3e-71 1
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 713 2.1e-70 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 689 7.2e-68 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 558 1.6e-65 2
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 653 4.7e-64 1
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 596 5.1e-58 1
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 288 1.1e-57 3
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 591 1.7e-57 1
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 591 1.7e-57 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 299 1.1e-54 2
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 299 1.1e-54 2
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 562 2.1e-54 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 464 5.0e-44 1
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 462 8.1e-44 1
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 409 3.4e-38 1
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 398 4.9e-37 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 388 5.7e-36 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 388 5.7e-36 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 360 5.2e-33 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 340 6.9e-31 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 324 3.4e-29 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 317 1.9e-28 1
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 315 3.1e-28 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 313 5.0e-28 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 312 6.4e-28 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 283 7.6e-25 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 278 2.6e-24 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 263 1.0e-22 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 260 2.1e-22 1
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 259 2.6e-22 1
UNIPROTKB|H0YBT3 - symbol:CNOT7 "CCR4-NOT transcription c... 160 1.4e-11 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 142 1.6e-09 1
UNIPROTKB|F1NEI8 - symbol:F1NEI8 "Uncharacterized protein... 107 0.00041 3
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 202/273 (73%), Positives = 242/273 (88%)
Query: 1 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEY 60
MS+ K +SI IREVWNDNLE E +LIR++VDD+P++AMDTEFPGIV R +G FK+++EY
Sbjct: 1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60
Query: 61 NYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTD-KYCLWQFNFREFSPDEDVYAYDSIK 119
+Y+ LK NV++LK+IQLGLTF+DE GNLP CGTD KYC+WQFNFREF + D+YA DSI+
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120
Query: 120 LLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDL 179
LL +SGIDF KN E G+D+ RF+ELLMSSGIVLN++VHWVTFHSGYDFGYLLKLLTC++L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180
Query: 180 PETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLT 239
PETQ FF++I +YFP +YDIKHLMKFCNSLHGGLNKLAELL+VER+GICHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240
Query: 240 CCTFMKMKDNFFKGSPEKYAGVLYGLGVENGQI 272
CTF K+++NFF GS EKY+GVLYGLGVENGQI
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQI 273
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 185/265 (69%), Positives = 224/265 (84%)
Query: 6 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNL 65
K +SI IREVW+ NL EF+LIR+IVD + YIAMDTEFPG+VL+ + FK +++ NY+ L
Sbjct: 6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65
Query: 66 KVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSG 125
K NVDLLKLIQ+GLTF+DENGNLP CGTDK+C+WQFNFREF+ ED+YA +SI+LL + G
Sbjct: 66 KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125
Query: 126 IDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQAC 185
IDFKKN EKG+D +RF EL+MSSGIVLND++ WVTFH GYDFGYL+KLLTCK+LP QA
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185
Query: 186 FFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMK 245
FF L+ +YFPT+YDIKHLM FCN L GGLN+LAEL+ VER+GICHQAGSDSLLT +F K
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245
Query: 246 MKDNFFKGSPEKYAGVLYGLGVENG 270
+K+ +F GS EKY GVLYGLGVE+G
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDG 270
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 165/266 (62%), Positives = 207/266 (77%)
Query: 6 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSI-GN-----FKSSSE 59
+ ++I IREVWN NLE E +LI +DD+PY+AMDTEFPGIV +++ N + E
Sbjct: 10 EDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYE 69
Query: 60 YNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIK 119
YNY LK NV++LKLIQLGLT +DE GNLP CGT+K C+WQFNFREF+ D++A DSI+
Sbjct: 70 YNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIE 129
Query: 120 LLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDL 179
LL +S ID +KN E GVDA RF+ELLM SG+VLND +HWVTFH GYDFGYLLKLL+ K+L
Sbjct: 130 LLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKEL 189
Query: 180 PETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLT 239
PE + FFD ++ +FP +YDIK+LM FC +L+GGL K+AELL V+R+GI HQAGSDSLLT
Sbjct: 190 PEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLT 249
Query: 240 CCTFMKMKDNFFKGSPEKYAGVLYGL 265
TF+KMK+ FF GS KY+G L+GL
Sbjct: 250 LRTFIKMKEFFFTGSLLKYSGFLFGL 275
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 154/256 (60%), Positives = 194/256 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I++VW NL+ E IR++VDDY YIAMDTEFPGIV R +GNF+S+S+Y+YQ L++NVD
Sbjct: 9 IKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDYHYQTLRLNVDQ 68
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTF+D GNL K C WQFNF+ FS ED+YA DSI LLSRSGI+FKKN
Sbjct: 69 LKIIQLGLTFSDSEGNLAK----PTCTWQFNFK-FSLSEDMYAQDSIDLLSRSGIEFKKN 123
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+ G+D + F E LMSSGIVLND++ W++FHSGYDFGYLLK LTC LP +A FF +
Sbjct: 124 EANGIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLDEADFFGSAR 183
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
YFP +YDIK++MK C +L GGL++LA+ L+++RIG HQAGSDSLLT TF KM+ FF
Sbjct: 184 TYFPCIYDIKYIMKSCKNLKGGLSELADDLDIKRIGPQHQAGSDSLLTSTTFFKMRKMFF 243
Query: 252 KGSPE--KYAGVLYGL 265
+ + KY +LYGL
Sbjct: 244 ENQLDDSKYLNILYGL 259
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 145/257 (56%), Positives = 196/257 (76%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW +NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 11 ICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 70
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 71 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLASSGLQFQKH 125
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL+DSV W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 126 EEEGIDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 185
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 186 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 245
Query: 252 KGSPE--KYAGVLYGLG 266
+ + + KY G LYGLG
Sbjct: 246 EDTIDDAKYCGRLYGLG 262
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/269 (54%), Positives = 197/269 (73%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 145/257 (56%), Positives = 194/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/269 (54%), Positives = 197/269 (73%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 145/257 (56%), Positives = 194/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/269 (54%), Positives = 197/269 (73%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 145/257 (56%), Positives = 194/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/269 (54%), Positives = 197/269 (73%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 145/257 (56%), Positives = 194/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 147/269 (54%), Positives = 197/269 (73%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 145/257 (56%), Positives = 194/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 144/257 (56%), Positives = 193/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+ V Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ S + KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 147/269 (54%), Positives = 196/269 (72%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NLE E IR + + YIAMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ M F+ELLM+SG+VL + V W++FHSGYDFGYL+K+L+ LP+ + FF+
Sbjct: 124 KKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 142/268 (52%), Positives = 192/268 (71%)
Query: 2 SILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYN 61
+IL IREVW NLE+E SLIR++VD YP +A+DTEFPG V + I + + +YN
Sbjct: 37 TILTADIGHEIREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMYPDYN 96
Query: 62 YQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLL 121
YQ L+ NVDLLK+IQ G+TF+D G LP C WQFNF+ FS +D+Y+ +I+LL
Sbjct: 97 YQTLRSNVDLLKIIQFGITFSDSTGCLPV----PTCTWQFNFK-FSLKDDMYSPYAIELL 151
Query: 122 SRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPE 181
GIDF++ ++ G+D FSEL +SSGIVLND + W+ FH GYDFGYLLK+L+C +LP+
Sbjct: 152 KSCGIDFQRIEDYGIDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLLKVLSCSELPK 211
Query: 182 TQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCC 241
+++ FFDL+++YFP +YD+K+LMK C +L GGL+ LAE L V R+G HQAGSDSLLT
Sbjct: 212 SESDFFDLLRIYFPCIYDVKYLMKSCKNLKGGLSGLAEDLNVVRVGPQHQAGSDSLLTNS 271
Query: 242 TFMKMKDNFFKGSPE--KYAGVLYGLGV 267
TF K+++ FF+ + KY G+LYG V
Sbjct: 272 TFFKLREEFFENEIDDHKYKGILYGYNV 299
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 142/257 (55%), Positives = 193/257 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW N+E E IR I+ +Y YIAMDTEFPG+V+R IG F+S+ +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK++QLGLTF +E+G+ P GT WQFNF+ F+ ED+Y+ DSI LL SG+ FKK+
Sbjct: 72 LKIVQLGLTFMNEDGDYPP-GTTT---WQFNFK-FNLTEDMYSQDSIDLLQNSGLQFKKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL ++V W++FHSGYDFGYL+KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEEHEFFQILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP +YD+K+LMK C +L GGL ++A+ LE++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLG 266
+ + + KY G LYGLG
Sbjct: 247 EDNIDDAKYCGRLYGLG 263
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 138/245 (56%), Positives = 185/245 (75%)
Query: 4 LPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQ 63
+P +E IR+VW NLE EF IR +V Y Y+AMDTEFPG+V R +G F+S+++Y+YQ
Sbjct: 13 IPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQ 72
Query: 64 NLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSR 123
L+ NVDLL++IQLGLTF D++G P G Y WQFNF+ F+ ED+YA DSI LL
Sbjct: 73 LLRCNVDLLRIIQLGLTFMDDDGKTPP-G---YSTWQFNFK-FNLSEDMYAQDSIDLLQN 127
Query: 124 SGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQ 183
SGI FKK++E G+D + F+ELLMSSGIVL +++ W+ FHSGYDFGYLLKLLT ++LP +
Sbjct: 128 SGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDE 187
Query: 184 ACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTF 243
+ FFDL+ +YFP ++DIK+LMK C +L GGL ++A+ LE+ R+G HQAGSD+LLT F
Sbjct: 188 SEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAF 247
Query: 244 MKMKD 248
KM++
Sbjct: 248 FKMRE 252
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 143/269 (53%), Positives = 191/269 (71%)
Query: 5 PKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQN 64
P ++ REVW +NLE EF LI +I+DDYP+I+MDTEFPG++ +S F + + Y
Sbjct: 12 PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 70
Query: 65 LKVNVDLLKLIQLGLTFTDENGNLPKCGTDKY--CLWQFNFREFSPDEDVYAYDSIKLLS 122
LK NVD L LIQ+GLT +D NGNLP G D + +W+FNFR+F D +A DSI+LL
Sbjct: 71 LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 130
Query: 123 RSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPET 182
R GIDF++N GV++ RF+EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT ++LP
Sbjct: 131 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 190
Query: 183 QACFFDLIKMYF-PTLYDIKHLMKFCNS-LHGGLNKLAELLEVER-IGICHQAGSDSLLT 239
F ++++ F +YD+KH+MKFC L GGL+++A LEV R +G CHQAGSDSLLT
Sbjct: 191 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 250
Query: 240 CCTFMKMKDNFF-KGSPEKYAGVLYGLGV 267
F +M+D +F + PEK+AGVLYGL V
Sbjct: 251 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 142/269 (52%), Positives = 194/269 (72%)
Query: 7 SESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNF--KSSSEYNYQN 64
S+ I IR+VW NLE EF LIR IV+DYP+I+MDTEFPG++ ++ + + + Y Y
Sbjct: 9 SDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNL 68
Query: 65 LKVNVDLLKLIQLGLTFTDENGNLPKCGTDKY--CLWQFNFREFSPDEDVYAYDSIKLLS 122
LK NVD L LIQ+GLT +D +GNLP G K +W+FNFR+F + D +A DSI+LL
Sbjct: 69 LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 128
Query: 123 RSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPET 182
R GIDF++N+ +GV++ RF+EL+MSSG++ N+SV WVTFHS YDFGYL+K+LT + LP
Sbjct: 129 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 188
Query: 183 QACFFDLIKMYF-PTLYDIKHLMKFCNS-LHGGLNKLAELLEVER-IGICHQAGSDSLLT 239
F L++ +F +YD+KH+M+FC L+GGL+++A LEV R +G CHQAGSDSLLT
Sbjct: 189 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 248
Query: 240 CCTFMKMKDNFF-KGSPEKYAGVLYGLGV 267
F +M+D +F + EK+AGVLYGL V
Sbjct: 249 WQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 131/231 (56%), Positives = 176/231 (76%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLT 239
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLT 234
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 558 (201.5 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 105/207 (50%), Positives = 147/207 (71%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
IR+VW NL E +++R +V+ YPYI+MDTEFPGIV R IG+F + ++Y+YQ L+ NVDL
Sbjct: 138 IRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARPIGSFTNKADYHYQTLRCNVDL 197
Query: 72 LKLIQLGLTFTDENGNLPKC-GTDKY------------CLWQFNFREFSPDEDVYAYDSI 118
LK+IQLG+T G +P TD C WQFNFR FS +ED+YA +S
Sbjct: 198 LKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFR-FSLEEDMYAQEST 256
Query: 119 KLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKD 178
+L+++GIDF +++ G+D + F LL+SSG+VL D VHW++FHSGYDFGYL+K++ C+
Sbjct: 257 AMLAKAGIDFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGYLMKIMLCQA 316
Query: 179 LPETQACFFDLIKMYFPTLYDIKHLMK 205
LPE + F L+ ++FP+LYDIK+LMK
Sbjct: 317 LPENEEEFHKLLNIFFPSLYDIKYLMK 343
Score = 127 (49.8 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 213 GLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFFKGSPE--KYAGVLYGLGVENG 270
GL +A+ L V+R+GI HQAGSDSL+T F KM+ F G + KY+G ++GL NG
Sbjct: 372 GLQDIADELGVKRVGIAHQAGSDSLVTGEIFWKMRQLVFNGKIDDSKYSGQIWGL---NG 428
Query: 271 QI 272
Q+
Sbjct: 429 QM 430
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 126/256 (49%), Positives = 179/256 (69%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
IR+VW+ NL+ E +LI +++ YP ++MDTEFPG+V R +G FKSS +Y+YQ L+ NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQ+GL +DE GN P + C WQFNF F+ +D+YA +SI+LL++SGIDFKK+
Sbjct: 85 LKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKH 139
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E G++ F+ELL+ SG+VL + V W+TFHSGYDF YLLK +T LP F+ ++
Sbjct: 140 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 199
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
+YFP YDIK++MK + GL +A+ L++ RIG HQAGSD+LLT F +++ +F
Sbjct: 200 IYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 259
Query: 252 KGSPE-KYAGVLYGLG 266
GS + + LYGLG
Sbjct: 260 DGSIDSRMLNQLYGLG 275
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 120/265 (45%), Positives = 175/265 (66%)
Query: 10 IHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNV 69
+ I V+ N+E EF+ IR V+DYPY+AMDTEFPG+V +G F+S ++NYQ + NV
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNV 80
Query: 70 DLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFK 129
++LKLIQ+G ++ G LP G +WQFNF FS ED+++++S+++L ++GIDF
Sbjct: 81 NMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFT 135
Query: 130 KNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDL 189
+ G+ F ELL +SG++ + + W+TF SGYDFGYLLK +T DLP+ ++ FF
Sbjct: 136 LLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMC 195
Query: 190 IKMYFPTLYDIKHLMKF--CNS--LHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMK 245
K FPT +DIK L++ C S L GGL ++A+ L+V+R G+ HQAGSD+LLT TF K
Sbjct: 196 HKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFK 255
Query: 246 MKDNFFKGSPEKYA----GVLYGLG 266
+K FF + + A G ++GLG
Sbjct: 256 IKKQFFGDNWNQIAPLICGHMFGLG 280
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 288 (106.4 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 51/107 (47%), Positives = 77/107 (71%)
Query: 99 WQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHW 158
WQFNF +FS +D+Y+ I+ L ++GIDF + G++ F+ L++SSG+V ++S+ W
Sbjct: 233 WQFNF-QFSLKDDMYSQSQIESLLQAGIDFVALERDGINPKEFASLMISSGMVCDESISW 291
Query: 159 VTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMK 205
++FHS YDFGYLLKLL C LPE Q F L++++FP +YD+K+ MK
Sbjct: 292 ISFHSAYDFGYLLKLLWCNMLPEDQDEFKQLLRLFFPNVYDVKYFMK 338
Score = 231 (86.4 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
IREVW NL E +++RD+++ Y YI+MDT FPG+V R +G+F+S +Y+YQ L+ NVD+
Sbjct: 126 IREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRDYHYQCLRANVDM 185
Query: 72 LKLIQLGLTFTDENGNLP 89
L +IQ+G+T +E+G P
Sbjct: 186 LNVIQIGITLFNEDGENP 203
Score = 120 (47.3 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 214 LNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFFKGS-PEKYAGVLYGL 265
L LAE+L+V+R G HQAGSDSLLT F +M++ F G PE G ++GL
Sbjct: 369 LETLAEVLKVKRTGPAHQAGSDSLLTGRAFFQMREKVFGGKLPEDILGQVWGL 421
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 110/202 (54%), Positives = 152/202 (75%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSL 210
+++++FP +YD+K+LMK C +L
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNL 205
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 110/202 (54%), Positives = 152/202 (75%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSL 210
+++++FP +YD+K+LMK C +L
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNL 205
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 299 (110.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 57/106 (53%), Positives = 80/106 (75%)
Query: 163 SGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLE 222
+GYDFGY++KLLT LPE + FF ++ ++FP++YD+K+LMK C +L GGL ++A+ L+
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLD 163
Query: 223 VERIGICHQAGSDSLLTCCTFMKMKDNFFKGSPE--KYAGVLYGLG 266
++RIG HQAGSDSLLT F +MK+ FF+ S + KY G LYGLG
Sbjct: 164 LQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 283 (104.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 63/113 (55%), Positives = 77/113 (68%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRS 124
LK+IQLGLTFT+E G P G + WQFNF+ F+ + Y +KLL+ S
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTGYDFGY-MVKLLTDS 118
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 299 (110.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 57/106 (53%), Positives = 80/106 (75%)
Query: 163 SGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLE 222
+GYDFGY++KLLT LPE + FF ++ ++FP++YD+K+LMK C +L GGL ++A+ L+
Sbjct: 104 TGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLD 163
Query: 223 VERIGICHQAGSDSLLTCCTFMKMKDNFFKGSPE--KYAGVLYGLG 266
++RIG HQAGSDSLLT F +MK+ FF+ S + KY G LYGLG
Sbjct: 164 LQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 283 (104.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 63/113 (55%), Positives = 77/113 (68%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRS 124
LK+IQLGLTFT+E G P G + WQFNF+ F+ + Y +KLL+ S
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTGYDFGY-MVKLLTDS 118
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 103/188 (54%), Positives = 144/188 (76%)
Query: 23 EFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFT 82
E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ NVDLLK+IQLGLTF
Sbjct: 3 EMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFM 62
Query: 83 DENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFS 142
+E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI FKK++E+G++ F+
Sbjct: 63 NEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFA 117
Query: 143 ELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKH 202
ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF++++++FP +YD+K+
Sbjct: 118 ELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKY 177
Query: 203 LMKFCNSL 210
LMK C +L
Sbjct: 178 LMKSCKNL 185
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 97/258 (37%), Positives = 150/258 (58%)
Query: 4 LPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQ 63
LP + +R+VW NL EF++IR +V Y ++++ TEF G + R IG F+S +Y+YQ
Sbjct: 152 LPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQ 211
Query: 64 NLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSR 123
++ NVD L IQLGL+ +D NGN P G WQFNF EF P +++ + +S++LL +
Sbjct: 212 TMRANVDFLNPIQLGLSLSDANGNKPDNGPST---WQFNF-EFDPKKEIMSTESLELLRK 267
Query: 124 SGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQ 183
SGI+F+K++ G+D FS+LLM SG++++DSV W+T+H+ YD G+L+ +L +P +
Sbjct: 268 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 327
Query: 184 ACFFDLIKMYFPTLYDI----KHLMKFCN-SLHGG----------LNKLAELLEVERIGI 228
F + Y P YD+ K + +F N L L LA+ L + R I
Sbjct: 328 EDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSI 387
Query: 229 CHQAGSDSLLTCCTFMKM 246
G SLL +F ++
Sbjct: 388 FTTTGGQSLLMLLSFCQL 405
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 85/157 (54%), Positives = 123/157 (78%)
Query: 112 VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLL 171
+Y+ DSI LL+ SG+ F+K++E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 172 KLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQ 231
KLLT LPE + FF ++ ++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQ
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQ 120
Query: 232 AGSDSLLTCCTFMKMKDNFFKGSPE--KYAGVLYGLG 266
AGSDSLLT F +MK+ FF+ S + KY G LYGLG
Sbjct: 121 AGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 157
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 96/261 (36%), Positives = 144/261 (55%)
Query: 13 REVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLL 72
R VW N++ E + + + + +P IA DTE+PGI+ R+ F SSS+ Y+ +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 73 KLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 132
KLIQ G T + G + G +W+ NF F D SI+ L R G+D +K +
Sbjct: 68 KLIQCGFTLFNAKGEIG--G-----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR 120
Query: 133 EKGVDAMRFSELLMSSGIVLNDS-VHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
++GVD + + + V +VTF YDF Y L +L LPET F +
Sbjct: 121 DEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVV 180
Query: 192 MYFPTLYDIKHLMKFCNSL--HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDN 249
F +YD K + FC L H GL+KLA+LL++ R+G H AGSDSL+T F+K+K +
Sbjct: 181 KVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLK-H 239
Query: 250 FFKGSPEKYA-GVLYGLGVEN 269
++ S ++A G++YG+G N
Sbjct: 240 VYEDS--RFARGLIYGIGKSN 258
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 80/144 (55%), Positives = 105/144 (72%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVL 152
KK++E+G++ F+ELLM+SG+VL
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVL 147
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 78/196 (39%), Positives = 123/196 (62%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYP---YIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
I+EVW+ NLEHEF +R ++D +IA+ E PGIV R +G FKSSS+Y++Q L+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSR-SGID 127
DLL LIQL L + N T +WQFNF + +++Y + + +L++ S I+
Sbjct: 214 SDLLNLIQLSLCVIKISKN-ETISTP--VIWQFNFL-YDLTKEMYNEEHLAMLAQTSQIN 269
Query: 128 FKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFF 187
F+ G+ F+EL++ SG++L+D+++WV+FH+GYD G+ + LL+ DLP + F+
Sbjct: 270 FQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFY 329
Query: 188 DLIKMYFPTLYDIKHL 203
YFP YD+K++
Sbjct: 330 WWCAKYFPNFYDLKYI 345
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 78/196 (39%), Positives = 123/196 (62%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYP---YIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
I+EVW+ NLEHEF +R ++D +IA+ E PGIV R +G FKSSS+Y++Q L+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSR-SGID 127
DLL LIQL L + N T +WQFNF + +++Y + + +L++ S I+
Sbjct: 214 SDLLNLIQLSLCVIKISKN-ETISTP--VIWQFNFL-YDLTKEMYNEEHLAMLAQTSQIN 269
Query: 128 FKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFF 187
F+ G+ F+EL++ SG++L+D+++WV+FH+GYD G+ + LL+ DLP + F+
Sbjct: 270 FQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFY 329
Query: 188 DLIKMYFPTLYDIKHL 203
YFP YD+K++
Sbjct: 330 WWCAKYFPNFYDLKYI 345
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 73/126 (57%), Positives = 93/126 (73%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVD 137
+E+G+D
Sbjct: 127 EEEGID 132
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 86/239 (35%), Positives = 125/239 (52%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N + E + IRD + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKE 133
LIQLGLT + G K W+ N +F+ + + SI L +G+D K +E
Sbjct: 62 LIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIRE 112
Query: 134 KGVDAMRFSELLMSSGIVLNDS---VHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLI 190
+G+ E M +LN+ + WVTF YD YLLK LT K LPET F + +
Sbjct: 113 EGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETV 169
Query: 191 KMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMKM 246
+ +YD+K + C+ L GL ++A++L++ R+G H AGSDS LT F K+
Sbjct: 170 QQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 85/229 (37%), Positives = 116/229 (50%)
Query: 25 SLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE 84
SLI D + Y +IA+DTEFP LR + E Y ++ +VD KLIQLGLT D
Sbjct: 2 SLIEDCLRSYRFIAIDTEFPS-TLRETTQHATDEE-RYMDMSFSVDRAKLIQLGLTLFDI 59
Query: 85 NGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRF-SE 143
NG + GT W+ NF +F D D SI+ L R+G+D +K +E+G+ F SE
Sbjct: 60 NGRIG--GT-----WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSE 111
Query: 144 LLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHL 203
+ + + WVTFH YD YLLK T + LP T F + ++YD+K +
Sbjct: 112 MFWMLKKTRRN-ITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVM 170
Query: 204 MKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250
C L GL LA + R+G H AGS++ LT F K+ F
Sbjct: 171 AGRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/113 (59%), Positives = 81/113 (71%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRS 124
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ S
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANS 119
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/242 (34%), Positives = 129/242 (53%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N E E IRD + + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYD-SIKLLSRSGIDFKKNK 132
LIQLG T D G + K W+ N +F+ + + D SI L +G++ K
Sbjct: 61 LIQLGFTLFDRRG-ITKT-------WEINLSDFN-EHKCFKNDKSIAFLKSNGLNLDKIG 111
Query: 133 EKGV---DAMR-FSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTC-KDLPETQACFF 187
E+G+ + R FS++L + + WV F YD YL+K LT K LPET+ F
Sbjct: 112 EEGIGIEEFFRDFSQILKEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFH 167
Query: 188 DLIKMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFM 244
+ ++ ++D+K + + C+ L GL ++A++L+++R+G H AGSDS LT F
Sbjct: 168 ETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFT 227
Query: 245 KM 246
K+
Sbjct: 228 KL 229
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 66/111 (59%), Positives = 80/111 (72%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLS 122
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLA 117
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 84/242 (34%), Positives = 128/242 (52%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N E E + IRD + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYD-SIKLLSRSGIDFKKNK 132
LIQLG T D G K W+ N +F + + D SI L +G++ K +
Sbjct: 66 LIQLGFTLFDRRG-FAKT-------WEINLSDFD-EHKCFKNDKSIAFLKSNGLNLDKIR 116
Query: 133 EKGV---DAMR-FSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTC-KDLPETQACFF 187
E+G+ + R FS++L + + WV F YD YL+K LT K LPET+ F
Sbjct: 117 EEGIGIDEFFRDFSQILTEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFH 172
Query: 188 DLIKMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFM 244
+ ++ ++D+K + + C+ L GL ++A++L+++R+G H AGSDS LT F
Sbjct: 173 ETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFT 232
Query: 245 KM 246
K+
Sbjct: 233 KL 234
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 63/113 (55%), Positives = 77/113 (68%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRS 124
LK+IQLGLTFT+E G P G + WQFNF+ F+ + Y +KLL+ S
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTGYDFGY-MVKLLTDS 118
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 57/93 (61%), Positives = 67/93 (72%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFR 104
LK+IQLGLTFT+E G P G + WQFNF+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK 100
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 45/85 (52%), Positives = 69/85 (81%)
Query: 112 VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLL 171
+Y+ DSI LL+ SG+ F+K++E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 172 KLLTCKDLPETQACFFDLIKMYFPT 196
KLLT LPE + FF ++ ++FP+
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFPS 85
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 51/99 (51%), Positives = 73/99 (73%)
Query: 170 LLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGIC 229
++KLLT LPE + FF ++ ++FP++YD+K+LMK C +L GGL ++A+ L+++RIG
Sbjct: 1 MVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQ 60
Query: 230 HQAGSDSLLTCCTFMKMKDNFFKGSPE--KYAGVLYGLG 266
HQAGSDSLLT F +MK+ FF+ S + KY G LYGLG
Sbjct: 61 HQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 99
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 51/78 (65%), Positives = 59/78 (75%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLP 89
LK+IQLGLTFT+E G P
Sbjct: 72 LKIIQLGLTFTNEKGEYP 89
>UNIPROTKB|H0YBT3 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000518541 Uniprot:H0YBT3
Length = 91
Score = 160 (61.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 164 GYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSL 210
GYDFGYL+K+LT +LPE + FF++++++FP +YD+K+LMK C +L
Sbjct: 2 GYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL 48
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 142 (55.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFK 55
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR 55
>UNIPROTKB|F1NEI8 [details] [associations]
symbol:F1NEI8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004535 GO:GO:0000289 GeneTree:ENSGT00530000063673
OMA:LEQTDSC EMBL:AADN02023913 IPI:IPI00576818
Ensembl:ENSGALT00000004886 Uniprot:F1NEI8
Length = 631
Score = 107 (42.7 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 43/144 (29%), Positives = 66/144 (45%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIV----LRSIGNFKSSSEYNYQNLKVN- 68
EV N + S + + +++ ++A+D EF GI + ++ N + E YQ LK +
Sbjct: 2 EVIRSNFKDNLSKVYEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 69 VDLLKLIQLGL-TFTDENGNLPKCGTDKYCLWQFNFREF-------SPD-EDVYAYDSIK 119
+D L L Q GL TF ++ +KY + FNF F SPD + V SI
Sbjct: 62 MDFL-LFQFGLCTFKYDHTE------EKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSID 114
Query: 120 LLSRSGIDFKKNKEKGVDAMRFSE 143
L+ G DF K G+ + E
Sbjct: 115 FLANQGFDFNKVFRNGIPYLNQEE 138
Score = 46 (21.3 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 130 KNKEKGVDAMRFSEL---LMSSG-IVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQAC 185
K +E+ DA+ FS + + +SG +V+ ++ H+ + F Y C LP+ +
Sbjct: 259 KEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF-Y------CP-LPDDLSE 310
Query: 186 FFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVER 225
F ++ FP L D K LM +N + L E+E+
Sbjct: 311 FKEVTSCVFPRLLDTK-LMASTQPFKDIINNTS-LAELEK 348
Score = 42 (19.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 230 HQAGSDSLLTCCTFMKMKDNFFKG--SPEK 257
H+AG D+ +T F+ M NF SP K
Sbjct: 377 HEAGYDAYITGLCFISMA-NFLGSFLSPPK 405
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 274 274 0.00078 115 3 11 22 0.47 33
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 602 (64 KB)
Total size of DFA: 220 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.47u 0.21s 23.68t Elapsed: 00:00:01
Total cpu time: 23.47u 0.21s 23.68t Elapsed: 00:00:01
Start: Sat May 11 04:50:55 2013 End: Sat May 11 04:50:56 2013