BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023963
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/273 (73%), Positives = 242/273 (88%), Gaps = 1/273 (0%)
Query: 1 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEY 60
MS+ K +SI IREVWNDNLE E +LIR++VDD+P++AMDTEFPGIV R +G FK+++EY
Sbjct: 1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60
Query: 61 NYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTD-KYCLWQFNFREFSPDEDVYAYDSIK 119
+Y+ LK NV++LK+IQLGLTF+DE GNLP CGTD KYC+WQFNFREF + D+YA DSI+
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120
Query: 120 LLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDL 179
LL +SGIDF KN E G+D+ RF+ELLMSSGIVLN++VHWVTFHSGYDFGYLLKLLTC++L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180
Query: 180 PETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLT 239
PETQ FF++I +YFP +YDIKHLMKFCNSLHGGLNKLAELL+VER+GICHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240
Query: 240 CCTFMKMKDNFFKGSPEKYAGVLYGLGVENGQI 272
CTF K+++NFF GS EKY+GVLYGLGVENGQI
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQI 273
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/273 (72%), Positives = 239/273 (87%)
Query: 1 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEY 60
MS+ K +SI IREVWNDNL+ E LIRD+VDD+PY+AMDTEFPGIV+R +G FKS+++Y
Sbjct: 1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60
Query: 61 NYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKL 120
+Y+ LK NV++LK+IQLGLTF++E GNLP CGTDKYC+WQFNFREF D D++A DSI+L
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120
Query: 121 LSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLP 180
L +SGID KN G+D+ RF+ELLMSSGIVLN++VHWVTFHSGYDFGYLLKLLTC++LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180
Query: 181 ETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTC 240
++Q FF LI +YFPT+YDIKHLMKFCNSLHGGLNKLAELLEVER+GICHQAGSDSLLT
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240
Query: 241 CTFMKMKDNFFKGSPEKYAGVLYGLGVENGQIS 273
CTF K+K+NFF G KY+GVLYGLGVENGQ++
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQVA 273
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 227/273 (83%)
Query: 1 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEY 60
M+ K +SI IREVW+ NL EF+LIR+IVD + YIAMDTEFPG+VL+ + FK +++
Sbjct: 1 MAETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL 60
Query: 61 NYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKL 120
NY+ LK NVDLLKLIQ+GLTF+DENGNLP CGTDK+C+WQFNFREF+ ED+YA +SI+L
Sbjct: 61 NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIEL 120
Query: 121 LSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLP 180
L + GIDFKKN EKG+D +RF EL+MSSGIVLND++ WVTFH GYDFGYL+KLLTCK+LP
Sbjct: 121 LRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP 180
Query: 181 ETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTC 240
QA FF L+ +YFPT+YDIKHLM FCN L GGLN+LAEL+ VER+GICHQAGSDSLLT
Sbjct: 181 LKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTL 240
Query: 241 CTFMKMKDNFFKGSPEKYAGVLYGLGVENGQIS 273
+F K+K+ +F GS EKY GVLYGLGVE+G +
Sbjct: 241 GSFRKLKERYFPGSTEKYTGVLYGLGVEDGTTT 273
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 342 bits (877), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/275 (61%), Positives = 208/275 (75%), Gaps = 10/275 (3%)
Query: 1 MSILPKSE----SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSI----- 51
MS P E +I IREVWN NLE E +LI +DD+PY+AMDTEFPGIV +++
Sbjct: 1 MSQAPNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPN 60
Query: 52 -GNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDE 110
+ EYNY LK NV++LKLIQLGLT +DE GNLP CGT+K C+WQFNFREF+
Sbjct: 61 PNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVIS 120
Query: 111 DVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYL 170
D++A DSI+LL +S ID +KN E GVDA RF+ELLM SG+VLND +HWVTFH GYDFGYL
Sbjct: 121 DMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYL 180
Query: 171 LKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICH 230
LKLL+ K+LPE + FFD ++ +FP +YDIK+LM FC +L+GGL K+AELL V+R+GI H
Sbjct: 181 LKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISH 240
Query: 231 QAGSDSLLTCCTFMKMKDNFFKGSPEKYAGVLYGL 265
QAGSDSLLT TF+KMK+ FF GS KY+G L+GL
Sbjct: 241 QAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 195/262 (74%), Gaps = 7/262 (2%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYP-SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLGVENGQ 271
+ S + KY G LYGLG Q
Sbjct: 247 EDSIDDAKYCGRLYGLGTGVAQ 268
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 195/262 (74%), Gaps = 7/262 (2%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E+G+D + F+ELLM+SG+VL D+V W++FHSGYDFGY++KLLT LPE + FF ++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++RIG HQAGSDSLLT F +MK+ FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 KGSPE--KYAGVLYGLGVENGQ 271
+ S + KY G LYGLG Q
Sbjct: 247 EDSIDDAKYCGRLYGLGTGVAQ 268
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 197/269 (73%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 197/269 (73%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 197/269 (73%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 197/269 (73%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+ELLM+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 288 bits (736), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 196/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NLE E IR + + YIAMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ M F+ELLM+SG+VL + V W++FHSGYDFGYL+K+L+ LP+ + FF+
Sbjct: 124 KKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 287 bits (734), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 145/269 (53%), Positives = 196/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ + IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+EL M+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE+ERIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 285 bits (729), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/269 (53%), Positives = 196/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVN 68
S I EVW NL+ + IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDF 128
VDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI F
Sbjct: 69 VDLLKIIQLGLTFVNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 KKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFD 188
KK++E+G++ F+EL M+SG+VL + V W++FHSGYDFGYL+K+LT +LPE + FF+
Sbjct: 124 KKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFE 183
Query: 189 LIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
+++++FP +YD+K+LMK C +L GGL ++AE LE++RIG HQAGSDSLLT F KM++
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFKGSPE--KYAGVLYGLG-----VENG 270
FF+ + KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 281 bits (719), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 191/269 (71%), Gaps = 7/269 (2%)
Query: 5 PKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQN 64
P ++ REVW +NLE EF LI +I+DDYP+I+MDTEFPG++ +S F + + Y
Sbjct: 12 PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 70
Query: 65 LKVNVDLLKLIQLGLTFTDENGNLPKCGTD--KYCLWQFNFREFSPDEDVYAYDSIKLLS 122
LK NVD L LIQ+GLT +D NGNLP G D + +W+FNFR+F D +A DSI+LL
Sbjct: 71 LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 130
Query: 123 RSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPET 182
R GIDF++N GV++ RF+EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT ++LP
Sbjct: 131 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 190
Query: 183 QACFFDLIKMYF-PTLYDIKHLMKFC-NSLHGGLNKLAELLEVER-IGICHQAGSDSLLT 239
F ++++ F +YD+KH+MKFC L GGL+++A LEV R +G CHQAGSDSLLT
Sbjct: 191 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 250
Query: 240 CCTFMKMKDNFF-KGSPEKYAGVLYGLGV 267
F +M+D +F + PEK+AGVLYGL V
Sbjct: 251 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 278 bits (710), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 195/269 (72%), Gaps = 8/269 (2%)
Query: 7 SESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNF--KSSSEYNYQN 64
S+ I IR+VW NLE EF LIR IV+DYP+I+MDTEFPG++ ++ + + + Y Y
Sbjct: 9 SDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNL 68
Query: 65 LKVNVDLLKLIQLGLTFTDENGNLPKCG--TDKYCLWQFNFREFSPDEDVYAYDSIKLLS 122
LK NVD L LIQ+GLT +D +GNLP G ++ +W+FNFR+F + D +A DSI+LL
Sbjct: 69 LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 128
Query: 123 RSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPET 182
R GIDF++N+ +GV++ RF+EL+MSSG++ N+SV WVTFHS YDFGYL+K+LT + LP
Sbjct: 129 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 188
Query: 183 QACFFDLIKMYF-PTLYDIKHLMKFC-NSLHGGLNKLAELLEVER-IGICHQAGSDSLLT 239
F L++ +F +YD+KH+M+FC L+GGL+++A LEV R +G CHQAGSDSLLT
Sbjct: 189 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 248
Query: 240 CCTFMKMKDNFF-KGSPEKYAGVLYGLGV 267
F +M+D +F + EK+AGVLYGL V
Sbjct: 249 WQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 258 bits (659), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 179/256 (69%), Gaps = 6/256 (2%)
Query: 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDL 71
IR+VW+ NL+ E +LI +++ YP ++MDTEFPG+V R +G FKSS +Y+YQ L+ NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 72 LKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 131
LK+IQ+GL +DE GN P + C WQFNF F+ +D+YA +SI+LL++SGIDFKK+
Sbjct: 85 LKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKH 139
Query: 132 KEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIK 191
+E G++ F+ELL+ SG+VL + V W+TFHSGYDF YLLK +T LP F+ ++
Sbjct: 140 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 199
Query: 192 MYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251
+YFP YDIK++MK + GL +A+ L++ RIG HQAGSD+LLT F +++ +F
Sbjct: 200 IYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 259
Query: 252 KGSPE-KYAGVLYGLG 266
GS + + LYGLG
Sbjct: 260 DGSIDSRMLNQLYGLG 275
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 174/265 (65%), Gaps = 13/265 (4%)
Query: 10 IHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNV 69
+ I V+ N+E EF+ IR V+DYPY+AMDTEFPG+V +G F+S ++NYQ + NV
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNV 80
Query: 70 DLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFK 129
++LKLIQ+G ++ G LP G +WQFNF FS ED+++++S+++L ++GIDF
Sbjct: 81 NMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFT 135
Query: 130 KNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDL 189
+ G+ F ELL +SG++ + + W+TF SGYDFGYLLK +T DLP+ ++ FF
Sbjct: 136 LLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMC 195
Query: 190 IKMYFPTLYDIKHLMKFCN----SLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMK 245
K FPT +DIK L++ N L GGL ++A+ L+V+R G+ HQAGSD+LLT TF K
Sbjct: 196 HKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFK 255
Query: 246 MKDNFFKGSPEKYA----GVLYGLG 266
+K FF + + A G ++GLG
Sbjct: 256 IKKQFFGDNWNQIAPLICGHMFGLG 280
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 24/282 (8%)
Query: 4 LPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQ 63
LP + +R+VW NL EF++IR +V Y ++++ TEF G + R IG F+S +Y+YQ
Sbjct: 152 LPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQ 211
Query: 64 NLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSR 123
++ NVD L IQLGL+ +D NGN P G WQFNF EF P +++ + +S++LL +
Sbjct: 212 TMRANVDFLNPIQLGLSLSDANGNKPDNGP---STWQFNF-EFDPKKEIMSTESLELLRK 267
Query: 124 SGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQ 183
SGI+F+K++ G+D FS+LLM SG++++DSV W+T+H+ YD G+L+ +L +P +
Sbjct: 268 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 327
Query: 184 ACFFDLIKMYFPTLYDIKHLMKFCNSLHG---------------GLNKLAELLEVERIGI 228
F + Y P YD+ + K L LA+ L + R I
Sbjct: 328 EDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSI 387
Query: 229 CHQAGSDSLLTCCTFMKMKD----NFFKGSP-EKYAGVLYGL 265
G SLL +F ++ F G+ KY GV+YG+
Sbjct: 388 FTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 141/262 (53%), Gaps = 18/262 (6%)
Query: 13 REVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLL 72
R VW N++ E + + + + +P IA DTE+PGI+ R+ F SSS+ Y+ +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 73 KLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 132
KLIQ G T + G + +W+ NF F D SI+ L R G+D +K +
Sbjct: 68 KLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR 120
Query: 133 EKGVD--AMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLI 190
++GVD F LM+ V +VTF YDF Y L +L LPET F +
Sbjct: 121 DEGVDMFGYGFFPKLMTV-FRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEV 179
Query: 191 KMYFPTLYDIKHLMKFCNSL--HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKD 248
F +YD K + FC L H GL+KLA+LL++ R+G H AGSDSL+T F+K+K
Sbjct: 180 VKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKH 239
Query: 249 NFFKGSPEKYA-GVLYGLGVEN 269
+ ++A G++YG+G N
Sbjct: 240 VY---EDSRFARGLIYGIGKSN 258
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N + E + IRD + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKE 133
LIQLGLT G W+ N +F+ + + SI L +G+D K +E
Sbjct: 62 LIQLGLTL---------FGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIRE 112
Query: 134 KGVDAMRFSELLMSSGIVLNDS---VHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLI 190
+G+ E M +LN+ + WVTF YD YLLK LT K LPET F + +
Sbjct: 113 EGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETV 169
Query: 191 KMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMKM 246
+ +YD+K + C+ L GL ++A++L++ R+G H AGSDS LT F K+
Sbjct: 170 QQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 116/228 (50%), Gaps = 12/228 (5%)
Query: 25 SLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE 84
SLI D + Y +IA+DTEFP + + + ++ E Y ++ +VD KLIQLGLT D
Sbjct: 2 SLIEDCLRSYRFIAIDTEFPSTLRETTQH--ATDEERYMDMSFSVDRAKLIQLGLTLFDI 59
Query: 85 NGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSEL 144
NG + GT W+ NF +F D D SI+ L R+G+D +K +E+G+ F
Sbjct: 60 NGRIG--GT-----WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSE 111
Query: 145 LMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLM 204
+ ++ WVTFH YD YLLK T + LP T F + ++YD+K +
Sbjct: 112 MFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMA 171
Query: 205 KFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250
C L GL LA + R+G H AGS++ LT F K+ F
Sbjct: 172 GRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 22/241 (9%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N E E + IRD + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKE 133
LIQLG T D G W+ N +F + SI L +G++ K +E
Sbjct: 66 LIQLGFTLFDRRGFAK--------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIRE 117
Query: 134 KGVDA----MRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTC-KDLPETQACFFD 188
+G+ FS++L + + WV F YD YL+K LT K LPET+ F +
Sbjct: 118 EGIGIDEFFRDFSQILTEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHE 173
Query: 189 LIKMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMK 245
++ ++D+K + + C+ L GL ++A++L+++R+G H AGSDS LT F K
Sbjct: 174 TVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTK 233
Query: 246 M 246
+
Sbjct: 234 L 234
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 22/241 (9%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLK 73
EVW N E E IRD + + IA+DTEFPG + + +S E Y+++K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 74 LIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKE 133
LIQLG T D G + K W+ N +F+ + SI L +G++ K E
Sbjct: 61 LIQLGFTLFDRRG-ITKT-------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGE 112
Query: 134 KGVDAMRF----SELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTC-KDLPETQACFFD 188
+G+ F S++L + + WV F YD YL+K LT K LPET+ F +
Sbjct: 113 EGIGIEEFFRDFSQILKEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHE 168
Query: 189 LIKMYFPT-LYDIKHLMKFCNSLHG--GLNKLAELLEVERIGICHQAGSDSLLTCCTFMK 245
++ ++D+K + + C+ L GL ++A++L+++R+G H AGSDS LT F K
Sbjct: 169 TVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTK 228
Query: 246 M 246
+
Sbjct: 229 L 229
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGI----VLRSIGNFKSSSEYNYQNLKVNV 69
E+ N + + +++ ++A+D EF GI + ++ N + E Y LK +
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61
Query: 70 DLLKLIQLGL-TFTDENGNLPKCGTDKYCLWQFNFREF-------SPDED-VYAYDSIKL 120
L Q GL TF +N KY + FNF F SPD+ V SI
Sbjct: 62 MEFLLFQFGLCTFNYDNTEA------KYLMKSFNFYIFPKPFNRNSPDKKFVCQSSSIDF 115
Query: 121 LSRSGIDFKKNKEKGV 136
L+ G DF K G+
Sbjct: 116 LANQGFDFNKVFRNGI 131
>sp|O14920|IKKB_HUMAN Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Homo
sapiens GN=IKBKB PE=1 SV=1
Length = 756
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 180 PETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLT 239
P+ FF L K++ + I+ L + CN L G + A ++ + R C +S+ +
Sbjct: 417 PKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQG--QRAAMMNLLRNNSCLSKMKNSMAS 474
Query: 240 CCTFMKMKDNFFKGS 254
+K K +FFK S
Sbjct: 475 MSQQLKAKLDFFKTS 489
>sp|Q5F356|PI42A_CHICK Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Gallus
gallus GN=PIP4K2A PE=2 SV=1
Length = 405
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 128 FKKNKEK-GVDAMRFSELLMSSGIVLNDSVHW--VTFHSGYDFGYLLKLLTCKDLPE 181
F+ +E+ G+D F L S + NDS FH+ YD Y++K +T +D+ E
Sbjct: 97 FRNLRERFGIDDQDFQNSLTRSAPLANDSQARSGARFHTSYDKRYIIKTITSEDVAE 153
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 31 VDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPK 90
VD Y+++D EF G++ N K++ + Y+ L+ + ++Q+G+TF N
Sbjct: 19 VDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQNN--- 75
Query: 91 CGTDKYCLWQFNFREFSPDEDVYAYD------SIKLLSRSGIDFKKNKEKGV 136
G N DE D SIK L + G DF K +GV
Sbjct: 76 -GKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQLTEGV 126
>sp|O13010|PI42A_PIG Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Sus
scrofa GN=PIP4K2A PE=2 SV=1
Length = 406
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 128 FKKNKEK-GVDAMRFSELLMSSGIVLNDSVHW--VTFHSGYDFGYLLKLLTCKDLPE 181
F+ +E+ G+D F L S + NDS FH+ YD Y++K +T +D+ E
Sbjct: 98 FRNLRERFGIDDQDFQNSLTRSAPLPNDSXARSGARFHTSYDRRYVIKTITSEDVAE 154
>sp|P48426|PI42A_HUMAN Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo
sapiens GN=PIP4K2A PE=1 SV=2
Length = 406
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 128 FKKNKEK-GVDAMRFSELLMSSGIVLNDSVHW--VTFHSGYDFGYLLKLLTCKDLPE 181
F+ +E+ G+D F L S + NDS FH+ YD Y++K +T +D+ E
Sbjct: 98 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAE 154
>sp|Q9R0I8|PI42A_RAT Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Rattus
norvegicus GN=Pip4k2a PE=1 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 128 FKKNKEK-GVDAMRFSELLMSSGIVLNDSVHW--VTFHSGYDFGYLLKLLTCKDLPE 181
F+ +E+ G+D F L S + NDS FH+ YD Y++K +T +D+ E
Sbjct: 98 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYVIKTITSEDVAE 154
>sp|O70172|PI42A_MOUSE Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Mus
musculus GN=Pip4k2a PE=1 SV=1
Length = 405
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 128 FKKNKEK-GVDAMRFSELLMSSGIVLNDSVHW--VTFHSGYDFGYLLKLLTCKDLPE 181
F+ +E+ G+D F L S + NDS FH+ YD Y++K +T +D+ E
Sbjct: 98 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYVIKTITSEDVAE 154
>sp|Q63HN8|RN213_HUMAN E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1
SV=3
Length = 5207
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 167 FGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERI 226
FG +L + K P T F D++K + TL D+KH+ + C + L + E + +R+
Sbjct: 1025 FGIVLSAVITKSWPRTADNFNDILK-HLLTLADVKHVFRLCGTDEKILANVTE--DAKRL 1081
Query: 227 GICHQAGSDSLLT 239
A +DS+LT
Sbjct: 1082 I----AVADSVLT 1090
>sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2
PE=2 SV=1
Length = 603
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 45/212 (21%)
Query: 71 LLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDE--DVYAYDSIKLLSRSGIDF 128
L K+ +LG + G G +C+W+ + S +E + A ++ L G+D
Sbjct: 372 LAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSLEERTKLKARQGVQHLGLEGLDV 431
Query: 129 KKNKEKGV---DAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQAC 185
K D + E++ V+ SGY KD+ T+
Sbjct: 432 KDPLTMETVPDDGLTMGEVMFRGNTVM----------SGY----------FKDIEATRKA 471
Query: 186 F-------FDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLL 238
F DL Y +IK +K + GG N +EVER+ HQA ++ +
Sbjct: 472 FEGDWFHSGDLAVKYPDGYIEIKDRLKDV-IISGGEN--ISSVEVERVLCSHQAVLEAAV 528
Query: 239 ----------TCCTFMKMKDNFFKGSPEKYAG 260
T C F+K+K+ F PE+ G
Sbjct: 529 VARPDHHWGQTPCGFVKLKEGFDTIKPEEIIG 560
>sp|A0R4C9|THTR_MYCS2 Putative thiosulfate sulfurtransferase OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_5789 PE=1 SV=1
Length = 277
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 109 DEDVYAYDSIKLLSRSGIDFKKN-----KEKGVDAMRFSELLMSSGIVLNDSV 156
DED AYD+ + +D+K + + VDA +FS+LL GI +D+V
Sbjct: 28 DEDTSAYDTGHIEGAVKLDWKTDLQDPIRRDFVDAQQFSKLLSERGIANDDTV 80
>sp|Q3YSF3|SYC_EHRCJ Cysteine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=cysS PE=3
SV=1
Length = 459
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 99 WQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLND---- 154
WQ FR D+++ + ++R+ DFKK D +R +LL+S GIVL+D
Sbjct: 400 WQDWFRVNENDQEIDKLIDERRIARANNDFKK-----ADDIR--QLLLSKGIVLSDNKDG 452
Query: 155 SVHW 158
+ HW
Sbjct: 453 TTHW 456
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGI----VLRSIGNFKSSSEYNYQNLKVNV 69
E+ N + + +++ + A+D EF GI + ++ N + E YQ LK +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 70 DLLKLIQLGL-TFTDENGNLPKCGTDKYCLWQFNFREF-------SPDED-VYAYDSIKL 120
L Q GL TF + + KY FNF F SPD V SI
Sbjct: 62 MDFLLFQFGLCTFKYDYTD------SKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDF 115
Query: 121 LSRSGIDFKKNKEKGV 136
L+ G DF K G+
Sbjct: 116 LASQGFDFNKVFRNGI 131
>sp|Q7TX80|THTR2_MYCBO Putative thiosulfate sulfurtransferase 2 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=cysA2 PE=3 SV=1
Length = 320
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 109 DEDVYAYDSIKLLSRSGIDFKKN-----KEKGVDAMRFSELLMSSGIVLNDSV 156
DED AYD + +D++ + K VDA +FS+LL GI D+V
Sbjct: 28 DEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTV 80
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 14 EVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGI----VLRSIGNFKSSSEYNYQNLKVNV 69
E+ N + + +++ + A+D EF GI + ++ N + E YQ LK +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 70 DLLKLIQLGL-TFTDENGNLPKCGTDKYCLWQFNFREF-------SPDED-VYAYDSIKL 120
L Q GL TF + + KY FNF F SPD V SI
Sbjct: 62 MDFLLFQFGLCTFKYDYTD------SKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDF 115
Query: 121 LSRSGIDFKKNKEKGV 136
L+ G DF K G+
Sbjct: 116 LASQGFDFNKVFRNGI 131
>sp|O05793|THTR_MYCTU Putative thiosulfate sulfurtransferase OS=Mycobacterium
tuberculosis GN=cysA1 PE=1 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 109 DEDVYAYDSIKLLSRSGIDFKKN-----KEKGVDAMRFSELLMSSGIVLNDSV 156
DED AYD + +D++ + K VDA +FS+LL GI D+V
Sbjct: 28 DEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTV 80
>sp|P59989|THTR1_MYCBO Putative thiosulfate sulfurtransferase 1 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=cysA1 PE=3 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 109 DEDVYAYDSIKLLSRSGIDFKKN-----KEKGVDAMRFSELLMSSGIVLNDSV 156
DED AYD + +D++ + K VDA +FS+LL GI D+V
Sbjct: 28 DEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTV 80
>sp|Q4FM76|COAX_PELUB Type III pantothenate kinase OS=Pelagibacter ubique (strain
HTCC1062) GN=coaX PE=3 SV=1
Length = 248
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 172 KLLTCKDLPETQACFFDLIKMYFPTLYDIK-HLMKFCNSLHGGLNKLAELLEVERIGICH 230
K L C +P+ F+ +K++F +Y IK H +K N LNKL ++ +V
Sbjct: 55 KCLFCSVVPKK----FNAVKIFFKKVYKIKCHELKKLN-----LNKLIKI-KVNY----K 100
Query: 231 QAGSDSLLTCCTFMKMKDNFF 251
Q GSD L + + KDNF
Sbjct: 101 QIGSDRLANAISIINNKDNFI 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,034,385
Number of Sequences: 539616
Number of extensions: 4630363
Number of successful extensions: 9824
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9738
Number of HSP's gapped (non-prelim): 51
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)