Query 023963
Match_columns 274
No_of_seqs 149 out of 485
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 8.2E-94 2.8E-98 657.4 22.3 263 1-268 1-265 (285)
2 1uoc_A POP2; hydrolase, DEDD n 100.0 6.4E-93 2.2E-97 651.3 24.3 264 1-268 3-288 (289)
3 2p51_A SPCC18.06C protein; DED 100.0 2.7E-92 9.3E-97 655.1 24.4 260 5-269 16-276 (333)
4 2d5r_A CCR4-NOT transcription 100.0 3.4E-92 1.2E-96 636.4 22.6 250 11-265 1-252 (252)
5 3d45_A Poly(A)-specific ribonu 100.0 9.1E-62 3.1E-66 476.9 21.4 246 12-263 2-418 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 4.5E-52 1.5E-56 400.9 18.3 233 13-251 1-398 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.9 2E-08 6.8E-13 88.2 13.8 186 23-251 26-222 (235)
8 1w0h_A 3'-5' exonuclease ERI1; 98.8 2.6E-07 8.8E-12 78.9 15.8 173 35-250 11-195 (204)
9 2f96_A Ribonuclease T; RNAse, 98.8 1.3E-07 4.6E-12 82.3 14.2 182 27-251 22-214 (224)
10 3cg7_A CRN-4, cell death-relat 98.7 6E-07 2E-11 82.5 15.5 173 35-250 20-209 (308)
11 2gui_A DNA polymerase III epsi 98.6 3.9E-07 1.3E-11 77.4 12.2 172 34-249 9-184 (194)
12 2xri_A ERI1 exoribonuclease 3; 98.6 2.1E-06 7.2E-11 74.9 17.2 170 35-249 32-213 (224)
13 2p1j_A POLIII, DNA polymerase 98.6 8.4E-07 2.9E-11 75.2 13.8 164 31-249 9-175 (186)
14 1zbh_A 3'-5' exonuclease ERI1; 98.6 1.9E-06 6.6E-11 78.6 16.4 174 34-250 78-263 (299)
15 3mxm_B Three prime repair exon 98.5 8.2E-07 2.8E-11 78.8 12.2 177 35-251 13-216 (242)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.4 3.3E-06 1.1E-10 79.0 13.6 174 34-250 128-313 (349)
17 2qxf_A Exodeoxyribonuclease I; 98.4 4.2E-06 1.4E-10 81.5 14.2 176 31-249 6-200 (482)
18 1y97_A Three prime repair exon 98.3 5.9E-06 2E-10 72.2 13.2 174 34-251 10-211 (238)
19 3u3y_B Three prime repair exon 98.2 6.7E-06 2.3E-10 75.9 11.3 178 35-251 13-216 (314)
20 1wlj_A Interferon stimulated g 98.2 6.9E-06 2.4E-10 69.7 9.8 158 33-251 4-170 (189)
21 2igi_A Oligoribonuclease; RNAs 98.0 0.00012 4.1E-09 61.1 13.3 169 33-251 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 97.5 0.00065 2.2E-08 57.6 10.7 170 32-251 7-182 (194)
23 3tr8_A Oligoribonuclease; tran 97.2 0.011 3.9E-07 50.1 15.2 169 32-252 7-183 (186)
24 2kfn_A Klenow fragment of DNA 96.5 0.062 2.1E-06 53.3 16.0 84 151-250 86-193 (605)
25 4hec_A Putative uncharacterize 70.3 35 0.0012 28.7 10.0 73 155-248 106-180 (190)
26 2hbj_A Exosome complex exonucl 54.2 30 0.001 32.3 7.3 82 153-251 157-255 (410)
27 4i4d_A Peptide synthetase NRPS 43.7 28 0.00096 24.9 4.3 35 216-250 24-61 (93)
28 1yt3_A Ribonuclease D, RNAse D 42.4 52 0.0018 29.9 6.8 83 153-251 72-171 (375)
29 1dny_A Non-ribosomal peptide s 41.5 29 0.00098 24.9 4.0 35 216-250 22-59 (91)
30 3saf_A Exosome component 10; e 36.3 66 0.0023 30.3 6.6 83 153-251 180-278 (428)
31 2fi0_A Conserved domain protei 30.7 34 0.0012 24.4 2.8 37 114-150 22-75 (81)
32 2e6m_A Werner syndrome ATP-dep 28.8 58 0.002 26.6 4.4 82 153-250 94-195 (208)
33 2ogf_A Hypothetical protein MJ 27.7 21 0.00072 28.1 1.2 43 160-202 24-70 (122)
34 1vk0_A Hypothetical protein; h 26.5 91 0.0031 26.1 5.2 81 152-248 105-205 (206)
35 2i52_A Hypothetical protein; s 25.3 25 0.00084 27.6 1.2 43 160-202 19-65 (121)
36 1dp7_P MHC class II transcript 25.3 76 0.0026 22.7 3.8 29 169-197 26-54 (76)
37 4dfk_A DNA polymerase I, therm 24.4 91 0.0031 30.2 5.4 51 196-250 77-128 (540)
38 4g3h_A Arginase (ROCF); rossma 23.1 1.3E+02 0.0043 27.1 5.8 64 17-82 209-282 (330)
39 3nuf_A PRD-containing transcri 22.5 41 0.0014 26.3 2.0 39 131-185 39-77 (119)
40 1vk0_A Hypothetical protein; h 22.2 65 0.0022 27.1 3.4 30 15-44 25-56 (206)
41 1jf8_A Arsenate reductase; ptp 22.2 58 0.002 25.1 2.9 31 112-142 43-73 (131)
42 3rdw_A Putative arsenate reduc 21.9 1.2E+02 0.0042 22.9 4.8 45 106-150 10-56 (121)
43 2dhy_A CUE domain-containing p 21.9 1.2E+02 0.0043 21.0 4.3 27 181-208 16-42 (67)
44 1x9m_A DNA polymerase; DNA plo 20.2 40 0.0014 33.7 2.0 23 229-251 162-184 (698)
45 3fz4_A Putative arsenate reduc 20.2 82 0.0028 23.9 3.4 42 109-150 11-54 (120)
46 3gkx_A Putative ARSC family re 20.1 85 0.0029 23.8 3.4 43 108-150 11-55 (120)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-94 Score=657.45 Aligned_cols=263 Identities=54% Similarity=0.988 Sum_probs=247.7
Q ss_pred CCCCCCCCCceEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeee
Q 023963 1 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLT 80 (274)
Q Consensus 1 ~~~~~~~~~~~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit 80 (274)
|||.+.....+|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++|+||+++|+|||.+++||+|||
T Consensus 1 ~p~~~~~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt 80 (285)
T 4gmj_B 1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLT 80 (285)
T ss_dssp ---------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCCcCCCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEE
Confidence 89998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEE
Q 023963 81 FTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVT 160 (274)
Q Consensus 81 ~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvt 160 (274)
+|+++|+.|. .+++|||||+ |++.+|+|+++||+||++|||||||++++||++.+|+|+|++||++++++++||+
T Consensus 81 ~f~~~g~~p~----~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~Wvt 155 (285)
T 4gmj_B 81 FMNEQGEYPP----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLS 155 (285)
T ss_dssp EECTTSCCCS----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEE
T ss_pred eeccCCCcCC----CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEE
Confidence 9999999985 5899999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHH
Q 023963 161 FHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTC 240 (274)
Q Consensus 161 fhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~ 240 (274)
|||+||||||+|+|||++||+++.+|+++++.+||+|||+|||++.|.++++||++||+.|+|+|+|++||||||||||+
T Consensus 156 fH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~ 235 (285)
T 4gmj_B 156 FHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTG 235 (285)
T ss_dssp SSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHH
T ss_pred ecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC--ccccccEEeecCCC
Q 023963 241 CTFMKMKDNFFKGS--PEKYAGVLYGLGVE 268 (274)
Q Consensus 241 ~~F~~l~~~~~~~~--~~~~~~~i~Gl~~~ 268 (274)
+||++|++.||++. .++|+|+|||||..
T Consensus 236 ~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~ 265 (285)
T 4gmj_B 236 MAFFKMREMFFEDHIDDAKYCGHLYGLGSG 265 (285)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHhcCCcchHHhCCEEeccCCC
Confidence 99999999999765 55899999999965
No 2
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=6.4e-93 Score=651.25 Aligned_cols=264 Identities=38% Similarity=0.774 Sum_probs=240.5
Q ss_pred CCCC--CCCCCceEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeee
Q 023963 1 MSIL--PKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLG 78 (274)
Q Consensus 1 ~~~~--~~~~~~~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlG 78 (274)
||++ |++..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|
T Consensus 3 ~~~~~~p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlG 82 (289)
T 1uoc_A 3 MPPIFLPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLG 82 (289)
T ss_dssp -CCCCCCCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCCCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEE
Confidence 5655 55557999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCcee
Q 023963 79 LTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHW 158 (274)
Q Consensus 79 it~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~W 158 (274)
||+|+++|+.|.. .+++|||||+ |++.+|+|+++||+||+++||||||++++||++..|+|+|++||||++++|+|
T Consensus 83 Lt~~~~~g~~p~~---~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~W 158 (289)
T 1uoc_A 83 LSLSDANGNKPDN---GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTW 158 (289)
T ss_dssp EEEECTTCCCCSS---SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEE
T ss_pred EEEEccCCCcCCC---CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceE
Confidence 9999999999853 4899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccc---------------cHHHHHHHcCC
Q 023963 159 VTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHG---------------GLNKLAELLEV 223 (274)
Q Consensus 159 vtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~---------------~L~~la~~L~v 223 (274)
|+|||+||||||+|+|||++||+++++|++.++.+||++||+|||++.|.++++ ||++||+.|+|
T Consensus 159 itfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v 238 (289)
T 1uoc_A 159 ITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGL 238 (289)
T ss_dssp EESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTC
T ss_pred EEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999987765 69999999999
Q ss_pred ccCCCccccchhhHHHHHHHHHHHHhhcC----C-CccccccEEeecCCC
Q 023963 224 ERIGICHQAGSDSLLTCCTFMKMKDNFFK----G-SPEKYAGVLYGLGVE 268 (274)
Q Consensus 224 ~r~g~~HqAGsDS~lT~~~F~~l~~~~~~----~-~~~~~~~~i~Gl~~~ 268 (274)
+|+|.+|||||||+||++||+||++.+|. + +.++++|+|||||.+
T Consensus 239 ~r~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 239 PRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp CCCGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred CccCcccccHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 99999999999999999999999999873 3 367999999999875
No 3
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=2.7e-92 Score=655.06 Aligned_cols=260 Identities=48% Similarity=0.898 Sum_probs=247.5
Q ss_pred CCCCCceEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC
Q 023963 5 PKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE 84 (274)
Q Consensus 5 ~~~~~~~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~ 84 (274)
++++.+.|||||++||++||+.|+++|++|+||||||||||++++|.|.+++++|+||+++|+|||.++|||+|||+|++
T Consensus 16 ~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~ 95 (333)
T 2p51_A 16 ISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDE 95 (333)
T ss_dssp --CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECT
T ss_pred CCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEcc
Confidence 34556899999999999999999999999999999999999999999889889999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecc
Q 023963 85 NGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSG 164 (274)
Q Consensus 85 ~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~ 164 (274)
+|+.|. ++++|||||+ |++.+|+|+++||+||+++||||+|++++||++.+|+|+|++||||++++|+||+|||+
T Consensus 96 ~G~~p~----~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~ 170 (333)
T 2p51_A 96 EGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSG 170 (333)
T ss_dssp TSCCCT----TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCH
T ss_pred CCCCCC----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccc
Confidence 999985 4899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHH
Q 023963 165 YDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFM 244 (274)
Q Consensus 165 yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~ 244 (274)
||||||+|+|+|++||+++++|+++++.+||+|||||||++.|.++++||++||+.|+++|+|.+||||||||||++||+
T Consensus 171 YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~ 250 (333)
T 2p51_A 171 YDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFF 250 (333)
T ss_dssp HHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CccccccEEeecCCCC
Q 023963 245 KMKDNFFKG-SPEKYAGVLYGLGVEN 269 (274)
Q Consensus 245 ~l~~~~~~~-~~~~~~~~i~Gl~~~~ 269 (274)
||++.+|++ +.++++|+|||||...
T Consensus 251 kl~~~~f~~~~~~~~~g~l~Gl~~~~ 276 (333)
T 2p51_A 251 EIRSRYFDGSIDSRMLNQLYGLGSTG 276 (333)
T ss_dssp HHHHHHHTTSCCGGGTTCCTTC----
T ss_pred HHHHHhcCCCchhhhCCEEeccCcCc
Confidence 999999976 4789999999998764
No 4
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=3.4e-92 Score=636.41 Aligned_cols=250 Identities=56% Similarity=1.029 Sum_probs=243.4
Q ss_pred eEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCC
Q 023963 11 HIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPK 90 (274)
Q Consensus 11 ~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~ 90 (274)
.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||+|+++|+.|.
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~ 80 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCC
Confidence 48999999999999999999999999999999999999999888889999999999999999999999999999999985
Q ss_pred CCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHH
Q 023963 91 CGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYL 170 (274)
Q Consensus 91 ~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl 170 (274)
.+++|||||+ |+..+|+|+++||+||+++||||+|++++|||+..|+|+|++|||+++++|+||+|||+||||||
T Consensus 81 ----~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL 155 (252)
T 2d5r_A 81 ----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 155 (252)
T ss_dssp ----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHH
T ss_pred ----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHH
Confidence 4899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 171 LKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 171 ~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
+|+|||++||+++++|+++++.+||++||||||++.|.++++||++||+.|+++|+|++|||||||+||++||+||++.+
T Consensus 156 ~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 156 IKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ccccccEEeec
Q 023963 251 FKGS--PEKYAGVLYGL 265 (274)
Q Consensus 251 ~~~~--~~~~~~~i~Gl 265 (274)
|++. .++++|+||||
T Consensus 236 f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 236 FEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp SCSSCCHHHHTTBCTTC
T ss_pred cCCCCCHHHcCCEecCC
Confidence 9774 56999999997
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.1e-62 Score=476.89 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=207.5
Q ss_pred EEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCC----CCCChHHHHHHHHhcccccceeeeeeeeecCCCC
Q 023963 12 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGN----FKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGN 87 (274)
Q Consensus 12 i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~----~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~ 87 (274)
|+|||++||+++|+.|+++|++|+||||||||||++.+|.+. ..+++++||+++|+||+.++|||+|||+|+++|+
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 689999999999999999999999999999999999888643 2568999999999999999999999999999998
Q ss_pred CCCCCCCCeeeEEEeeeecCC-----CCC---ccchhhHHHHHHcCCCccchhhCCCChHHHHHHHH-----------Hc
Q 023963 88 LPKCGTDKYCLWQFNFREFSP-----DED---VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLM-----------SS 148 (274)
Q Consensus 88 ~p~~g~~~~~~wqFNF~~F~~-----~~d---~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~-----------~s 148 (274)
.+ .|++|||||++|+. ..| +|+++||+||+++||||||++++||+|..++|... .+
T Consensus 82 ~~-----~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~ 156 (507)
T 3d45_A 82 DS-----KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQAN 156 (507)
T ss_dssp SS-----CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC------
T ss_pred CC-----ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhh
Confidence 66 59999999999987 344 89999999999999999999999999988886543 11
Q ss_pred C-------------------------------------cc---cC-----------------------------------
Q 023963 149 G-------------------------------------IV---LN----------------------------------- 153 (274)
Q Consensus 149 g-------------------------------------Lv---~~----------------------------------- 153 (274)
| |. ++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v 236 (507)
T 3d45_A 157 GAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 236 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEE
Confidence 1 11 01
Q ss_pred --------------------------------------CCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCC
Q 023963 154 --------------------------------------DSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFP 195 (274)
Q Consensus 154 --------------------------------------~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP 195 (274)
.+..||.+++.+|++||++.++ +|||+++++|++.++.+||
T Consensus 237 ~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~lFP 315 (507)
T 3d45_A 237 SKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICVFP 315 (507)
T ss_dssp ---------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCC
Confidence 1467999999999999999999 6999999999999999999
Q ss_pred CcccHHHHHHHh--hhc--cccHHHHHHHcC-----Ccc-------------CCCccccchhhHHHHHHHHHHHHhhcC-
Q 023963 196 TLYDIKHLMKFC--NSL--HGGLNKLAELLE-----VER-------------IGICHQAGSDSLLTCCTFMKMKDNFFK- 252 (274)
Q Consensus 196 ~iyD~K~la~~~--~~l--~~~L~~la~~L~-----v~r-------------~g~~HqAGsDS~lT~~~F~~l~~~~~~- 252 (274)
.||||||||+.. ..+ .++|++|++.|+ +++ .|+.||||+||||||.||++|++.+..
T Consensus 316 ~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~~ 395 (507)
T 3d45_A 316 RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 395 (507)
T ss_dssp CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999873 344 578999999997 344 467899999999999999999988741
Q ss_pred ----C--------CccccccEEe
Q 023963 253 ----G--------SPEKYAGVLY 263 (274)
Q Consensus 253 ----~--------~~~~~~~~i~ 263 (274)
. ..+.+.|+|+
T Consensus 396 ~~~~~~~~~~~~~~l~~~~N~l~ 418 (507)
T 3d45_A 396 LSPPKMCVSARSKLIEPFFNKLF 418 (507)
T ss_dssp --------CCSCSSSGGGTTEEC
T ss_pred cCCcccccccchhHHHhhheeee
Confidence 0 1356888887
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=4.5e-52 Score=400.85 Aligned_cols=233 Identities=23% Similarity=0.281 Sum_probs=190.6
Q ss_pred EEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCC----CCCCChHHHHHHHHhcccccceeeeeeeeecCCCCC
Q 023963 13 REVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIG----NFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNL 88 (274)
Q Consensus 13 ~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~----~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~ 88 (274)
.|||++|+.+.|+.|+++|++|+||||||||||++.+|.+ ...+++++||+++|+||+.++|||+|||+|+++|+.
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 3899999999999999999999999999999999998763 234589999999999999999999999999999987
Q ss_pred CCCCCCCeeeEEEeeeecC----C----CCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHH--------------
Q 023963 89 PKCGTDKYCLWQFNFREFS----P----DEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLM-------------- 146 (274)
Q Consensus 89 p~~g~~~~~~wqFNF~~F~----~----~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~-------------- 146 (274)
+ .|++|||||++|+ . .+++|+++||+||++|||||||++++||+|..++|.-.
T Consensus 81 ~-----~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~ 155 (430)
T 2a1r_A 81 S-----KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANG 155 (430)
T ss_dssp T-----EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC------------
T ss_pred C-----ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcc
Confidence 6 4999999999994 3 24689999999999999999999999999965443200
Q ss_pred ----------H---------------------------------------cCc----c----cC--C-------------
Q 023963 147 ----------S---------------------------------------SGI----V----LN--D------------- 154 (274)
Q Consensus 147 ----------~---------------------------------------sgL----v----~~--~------------- 154 (274)
. +|. + .. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~ 235 (430)
T 2a1r_A 156 AGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKK 235 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCC
Confidence 0 000 0 00 0
Q ss_pred ---------------------------------Ccee------------EEeecchhHHHHHHHhcCCCCCCCHHHHHHH
Q 023963 155 ---------------------------------SVHW------------VTFHSGYDFGYLLKLLTCKDLPETQACFFDL 189 (274)
Q Consensus 155 ---------------------------------~v~W------------vtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~ 189 (274)
.++| |.+++.+|+.|+++.+. +|||+++++|++.
T Consensus 236 ~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~-~pLP~~~~eFk~~ 314 (430)
T 2a1r_A 236 ERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY-CPLPADLSEFKEM 314 (430)
T ss_dssp ---------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CCCCSSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhc-cCCCCCHHHHHHH
Confidence 0112 34456799999999998 5999999999999
Q ss_pred HHhhCCCcccHHHHHHHhh--hc--cccHHHHHHHcCCc------------------cCCCccccchhhHHHHHHHHHHH
Q 023963 190 IKMYFPTLYDIKHLMKFCN--SL--HGGLNKLAELLEVE------------------RIGICHQAGSDSLLTCCTFMKMK 247 (274)
Q Consensus 190 l~~~FP~iyD~K~la~~~~--~l--~~~L~~la~~L~v~------------------r~g~~HqAGsDS~lT~~~F~~l~ 247 (274)
++.+||.||||||||.... .+ .++|+.|.+.|.-. ..+..|+||+||||||.||.+|.
T Consensus 315 i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~ 394 (430)
T 2a1r_A 315 TTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 394 (430)
T ss_dssp HHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999998764 22 35799999987522 12567999999999999999999
Q ss_pred Hhhc
Q 023963 248 DNFF 251 (274)
Q Consensus 248 ~~~~ 251 (274)
....
T Consensus 395 ~~l~ 398 (430)
T 2a1r_A 395 NYLG 398 (430)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 8863
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.90 E-value=2e-08 Score=88.17 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=124.9
Q ss_pred HHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeec--CCCCCCCCCCCCeeeEE
Q 023963 23 EFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTD--ENGNLPKCGTDKYCLWQ 100 (274)
Q Consensus 23 el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~--~~g~~p~~g~~~~~~wq 100 (274)
++..+...++...||++|+|-+|+... .-.|||+|+..++ ++|+.. ....
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~---------------------~~~IieIgav~~~~~~~g~i~-------~~~~ 77 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK---------------------TDALLEIAAITLKMDEQGWLM-------PDTT 77 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCEE-------EEEE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC---------------------CCeEEEEEEEEEEEcCCCccc-------ccce
Confidence 444456668889999999999998421 1249999999986 356531 3566
Q ss_pred EeeeecCCC-CCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHc--Cccc---CCCceeEEeecchhHHHHHHHh
Q 023963 101 FNFREFSPD-EDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSS--GIVL---NDSVHWVTFHSGYDFGYLLKLL 174 (274)
Q Consensus 101 FNF~~F~~~-~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~s--gLv~---~~~v~Wvtfhg~yD~~yl~k~l 174 (274)
|+.+ .+.. .....+.+.+. +|+.-....+.|.+.....+.+..- ..+. .++..+|+++..+|+.+|-+.+
T Consensus 78 f~~~-v~P~~~~~i~~~~~~i---~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~ 153 (235)
T 3v9w_A 78 LHFH-VEPFVGANLQPEALAF---NGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAA 153 (235)
T ss_dssp EEEE-BCCCTTCBCCHHHHHH---HCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHH
Confidence 7776 4443 23455666553 8888775677888876544333320 0000 0345788888899999997765
Q ss_pred cCCCCCCCHHHHHHHHHhhC-C-CcccHHHHHHHhhhccccHHHHHHHcCCccCC-CccccchhhHHHHHHHHHHHHhhc
Q 023963 175 TCKDLPETQACFFDLIKMYF-P-TLYDIKHLMKFCNSLHGGLNKLAELLEVERIG-ICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 175 ~~~~LP~~~~~F~~~l~~~F-P-~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g-~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
....++.. -| + .++||..+++.... ..+|+.+++.+|++..+ ..|.|..|+..|+++|.+|.+.+.
T Consensus 154 ~~~g~~~~----------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 154 ERASLKRN----------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HHTTCCCC----------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCC----------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 42222110 01 1 46799988886532 24899999999998754 799999999999999999998864
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.77 E-value=2.6e-07 Score=78.92 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=116.2
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeecCCCCC-c
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE-NGNLPKCGTDKYCLWQFNFREFSPDED-V 112 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~-~g~~p~~g~~~~~~wqFNF~~F~~~~d-~ 112 (274)
.||++|+|-+|+..... ...-.|||+|...++. +|+ ..-+|+.+ .+.... .
T Consensus 11 ~~vviD~ETTGl~~~~~-----------------~~~~~Iieigav~~~~~~g~---------i~~~f~~l-v~P~~~~~ 63 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINTQ 63 (204)
T ss_dssp EEEECCCEECCCTTCCT-----------------TSCCCEEEEEEEEEETTTCS---------EEEEEEEE-BCCSSSCS
T ss_pred EEEEEEEecCCcCCCCC-----------------CCCCcEEEEEEEEEECCCCE---------EeeeeeeE-ECCCCCCc
Confidence 68999999999853210 0123599999999984 565 23457776 444332 4
Q ss_pred cchhhHHHHHHcCCCccchhhCCCChHHHHH----HHHHcCcccCCCceeEEeecchhHH-HHHHHhc--CCCCCCCHHH
Q 023963 113 YAYDSIKLLSRSGIDFKKNKEKGVDAMRFSE----LLMSSGIVLNDSVHWVTFHSGYDFG-YLLKLLT--CKDLPETQAC 185 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e----~l~~sgLv~~~~v~Wvtfhg~yD~~-yl~k~l~--~~~LP~~~~~ 185 (274)
..+.+.+. +||.=..+. +|.+.....+ .+-...+ ..+....|++++.+|++ +|-+.+. |-++|.
T Consensus 64 i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~---- 134 (204)
T 1w0h_A 64 LSDFCISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP---- 134 (204)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG----
T ss_pred cCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc----
Confidence 55555544 788766654 4666654333 3332221 12233577888899997 9876654 334442
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhhc---cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 186 FFDLIKMYFPTLYDIKHLMKFCNSL---HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 186 F~~~l~~~FP~iyD~K~la~~~~~l---~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
++..++||+.+++..-.. ..+|+.+++.+|++..|..|.|-.|+..|+.+|.+|.+..
T Consensus 135 -------~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 135 -------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp -------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------cccceEEHHHHHHHHhCCCCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 223578998888754222 2579999999999988889999999999999999998864
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.76 E-value=1.3e-07 Score=82.33 Aligned_cols=182 Identities=17% Similarity=0.205 Sum_probs=121.4
Q ss_pred HHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC--CCCCCCCCCCCeeeEEEeee
Q 023963 27 IRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE--NGNLPKCGTDKYCLWQFNFR 104 (274)
Q Consensus 27 I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~--~g~~p~~g~~~~~~wqFNF~ 104 (274)
+..-+++..||++|+|-+|+... .-.|||+|+..++. +|+. .....|+.+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~g~i-------~~~~~f~~l 73 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA---------------------TDALLEIAATTVGMDEKGFL-------FPEHTYFFR 73 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE-------EEEEEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC---------------------CCeeEEEEEEEEEEcCCCcc-------cccceEEEE
Confidence 45567788999999999998421 12499999999973 5542 135567776
Q ss_pred ecCCC-CCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHc--Cccc---CCCceeEEeecchhHHHHHHHhcCCC
Q 023963 105 EFSPD-EDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSS--GIVL---NDSVHWVTFHSGYDFGYLLKLLTCKD 178 (274)
Q Consensus 105 ~F~~~-~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~s--gLv~---~~~v~Wvtfhg~yD~~yl~k~l~~~~ 178 (274)
.+.. .....+.+.+. +||.=....+.|.+.....+.+..- ..+. .+....|++++.+|+.+|.+.+....
T Consensus 74 -V~P~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g 149 (224)
T 2f96_A 74 -IEPFEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTG 149 (224)
T ss_dssp -BCCCTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHT
T ss_pred -ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcC
Confidence 4432 33456666554 7998777778888875432222110 0000 12335778788999999877664211
Q ss_pred CCCCHHHHHHHHHhhC-C-CcccHHHHHHHhhhccccHHHHHHHcCCccCC-CccccchhhHHHHHHHHHHHHhhc
Q 023963 179 LPETQACFFDLIKMYF-P-TLYDIKHLMKFCNSLHGGLNKLAELLEVERIG-ICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 179 LP~~~~~F~~~l~~~F-P-~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g-~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
++. .-| + .++||..+++..-. ..+|..+++.+|++..+ ..|.|-.|++.|+++|.+|.+.+.
T Consensus 150 ~~~----------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 150 IKR----------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp CCC----------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc----------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 220 001 1 47899888875421 23799999999998754 799999999999999999988753
No 10
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.65 E-value=6e-07 Score=82.52 Aligned_cols=173 Identities=17% Similarity=0.236 Sum_probs=116.4
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeecCCCCC-c
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE-NGNLPKCGTDKYCLWQFNFREFSPDED-V 112 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~-~g~~p~~g~~~~~~wqFNF~~F~~~~d-~ 112 (274)
.||++|+|.||+.... + | .-.|||+|...++. +|+. .....|+-+ .+.... .
T Consensus 20 ~~vviD~ETTGl~~~~-----d-----~--------~~eIIEIgaV~vd~~~g~i-------~~~~~f~~l-V~P~~~p~ 73 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ-----D-----Y--------PCEVIQFAIVAYDVPNDKI-------REDISFNKY-VKPVLNRT 73 (308)
T ss_dssp EEEEEEEEECCBTTBC-----S-----C--------CCCEEEEEEEEEETTTTEE-------EEEEEEEEE-CBCSSBCS
T ss_pred eEEEEEeecCCCCCCC-----C-----C--------CCCeEEEEEEEEEcCCCEE-------eeccceeeE-ECCCCCCC
Confidence 5899999999985321 0 0 13599999999985 4542 112257766 444432 2
Q ss_pred cchhhHHHHHHcCCCccchhhCCCChHH----HHHHHHHcCcccCCCceeEEeecchhH-HHHHHHhc--CCCCCCCHHH
Q 023963 113 YAYDSIKLLSRSGIDFKKNKEKGVDAMR----FSELLMSSGIVLNDSVHWVTFHSGYDF-GYLLKLLT--CKDLPETQAC 185 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k~~~~GI~~~~----f~e~l~~sgLv~~~~v~Wvtfhg~yD~-~yl~k~l~--~~~LP~~~~~ 185 (274)
..+.+.+. +||.=..+. .|.+... |.+.+-...++ ..++.|++ +|.+|+ .+|-+.+. |-++|.
T Consensus 74 i~~~~~~l---tGIt~e~v~-~ap~~~evl~~f~~~l~~~~lv-ahn~~lv~-~g~fD~~~fL~~~~~~~g~~~p~---- 143 (308)
T 3cg7_A 74 LTKNCVDF---TGIPQRSID-TADTFDVVYEQFQQWLITLGLE-EGKFAFVC-DSRQDLWRIAQYQMKLSNIQMPA---- 143 (308)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSCBHHHHHHHHHHHHHHHCCC-TTSEEEEE-SSSHHHHTHHHHHHHHTTCCCCG----
T ss_pred CCHHHHHH---cCCCHHHHh-cCCCHHHHHHHHHHHHHhCCcC-CcceEEec-cCcccHHHHHHHHHHHcCCCCch----
Confidence 55555544 788766554 4777654 44444444454 45667776 478999 68865543 445543
Q ss_pred HHHHHHhhCCCcccHHHHHHHhh-hc-------cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 186 FFDLIKMYFPTLYDIKHLMKFCN-SL-------HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 186 F~~~l~~~FP~iyD~K~la~~~~-~l-------~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
+|....||+.+++..- .. ..+|..+++.+|++..|..|.|-.|+..|+.+|.+|.+..
T Consensus 144 -------~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 144 -------FFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp -------GGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------hhcceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 2224679988876542 22 2379999999999988888999999999999999998763
No 11
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.61 E-value=3.9e-07 Score=77.37 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=110.0
Q ss_pred CCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCcc
Q 023963 34 YPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVY 113 (274)
Q Consensus 34 ~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~ 113 (274)
.+||++|+|-+|+.... . | -+.-.|||+|...++ +|+.- ...|+.+ .+... ..
T Consensus 9 ~~~vviD~ETTGl~~~~--~--------~------~~~~~Iieig~v~~~-~~~~~--------~~~f~~l-v~P~~-~i 61 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG--A--------H------YEGHKIIEIGAVEVV-NRRLT--------GNNFHVY-LKPDR-LV 61 (194)
T ss_dssp CEEEEEEEEESCCCSSS--S--------T------TTTCCEEEEEEEEEE-TTEEC--------SCCEEEE-CCCSS-CC
T ss_pred CCEEEEEeeCCCCCCcc--c--------C------CCCCEEEEEEEEEEE-CCeEe--------ccEEEEE-ECcCC-cC
Confidence 57999999999985321 0 0 012359999999887 34321 1235555 43332 44
Q ss_pred chhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhc--CCCCCCCHHHHHHHHH
Q 023963 114 AYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLT--CKDLPETQACFFDLIK 191 (274)
Q Consensus 114 ~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~--~~~LP~~~~~F~~~l~ 191 (274)
.+.+.+. +||.=..+. .+.+.....+.+.. ++ .. -..|++++.+|+.+|.+.+. |.+.|. ..
T Consensus 62 ~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~--~l-~~-~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~------- 125 (194)
T 2gui_A 62 DPEAFGV---HGIADEFLL-DKPTFAEVADEFMD--YI-RG-AELVIHNAAFDIGFMDYEFSLLKRDIPK-TN------- 125 (194)
T ss_dssp CHHHHHH---HCCCHHHHT-TSCCHHHHHHHHHH--HH-TT-SEEEETTHHHHHHHHHHHHHHTCSCCCC-GG-------
T ss_pred CHHHHHh---hCcCHHHHh-CCCCHHHHHHHHHH--HH-CC-CeEEEEchHHhHHHHHHHHHHcCCCCcc-cc-------
Confidence 5555444 788755553 45555544333332 12 12 25788888999999977664 444442 10
Q ss_pred hhCCCcccHHHHHHHh-hhccccHHHHHHHcCCccCC-CccccchhhHHHHHHHHHHHHh
Q 023963 192 MYFPTLYDIKHLMKFC-NSLHGGLNKLAELLEVERIG-ICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 192 ~~FP~iyD~K~la~~~-~~l~~~L~~la~~L~v~r~g-~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
.+..++||..+++.. ++...+|+.+++.+|++..+ ..|.|-.|+..|+++|.+|.+.
T Consensus 126 -~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 126 -TFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -GTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred -ccCceeeHHHHHHHHcCCCCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 012477887776654 23446899999999999877 5999999999999999998654
No 12
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.61 E-value=2.1e-06 Score=74.93 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=113.0
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCC-CCCCCCCCCCeeeEEEeeeecCCCC-Cc
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDEN-GNLPKCGTDKYCLWQFNFREFSPDE-DV 112 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~-g~~p~~g~~~~~~wqFNF~~F~~~~-d~ 112 (274)
.||++|+|.+|+.... +.-.|||+|...++.. |+ ..-+|+.+ .+... ..
T Consensus 32 ~~vviD~ETTGl~~~~-------------------d~~~IieIgav~v~~~~~~---------i~~~f~~l-V~P~~~~~ 82 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI-------------------HPQEIIEFPILKLNGRTME---------IESTFHMY-VQPVVHPQ 82 (224)
T ss_dssp EEEEECCEECCCC-CC-------------------SSCCEEEEEEEEEETTTCC---------EEEEEEEE-CCCSSSCS
T ss_pred eEEEEEEEcCCCCCCC-------------------CCcceEEEEEEEEecCCcE---------EeeeeeeE-ECCCCCCc
Confidence 5999999999985320 1125999999999854 32 34567776 44433 24
Q ss_pred cchhhHHHHHHcCCCccchhhCCCChHH----HHHHHHHcCccc-CCCceeEEeecchhHHHHH-HHhc--CCCCCCCHH
Q 023963 113 YAYDSIKLLSRSGIDFKKNKEKGVDAMR----FSELLMSSGIVL-NDSVHWVTFHSGYDFGYLL-KLLT--CKDLPETQA 184 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k~~~~GI~~~~----f~e~l~~sgLv~-~~~v~Wvtfhg~yD~~yl~-k~l~--~~~LP~~~~ 184 (274)
..+.+.+. +||.=... ..|.+... |.+.+-...+|- |....|++. |.+|+.+++ +.+. |-++|.
T Consensus 83 i~~~~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~--- 154 (224)
T 2xri_A 83 LTPFCTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD--- 154 (224)
T ss_dssp CCHHHHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG---
T ss_pred CCHHHHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc---
Confidence 55555554 78876654 45777654 444444444553 334577777 699999855 3332 445442
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhc--cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHh
Q 023963 185 CFFDLIKMYFPTLYDIKHLMKFCNSL--HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 185 ~F~~~l~~~FP~iyD~K~la~~~~~l--~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
+|....|++...+....+ ..+|..+++.+|++..|.+|.|-.|+..|+.+|.+|.+.
T Consensus 155 --------~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 155 --------YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp --------GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred --------cccceEeHHHHHHHHhccCCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 123567865444333332 247999999999998888999999999999999999876
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.60 E-value=8.4e-07 Score=75.16 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=107.7
Q ss_pred hhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCC
Q 023963 31 VDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDE 110 (274)
Q Consensus 31 i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~ 110 (274)
+.+.+||++|+|.+|+.... -.|||+|+..++ +|+ ..-.|+.+ .+...
T Consensus 9 l~~~~~v~iD~ETTGl~~~~---------------------~~IieIg~v~~~-~g~---------i~~~f~~l-v~P~~ 56 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQV---------------------DEIIEIGAVKIQ-GGQ---------IVDEYHTL-IKPSR 56 (186)
T ss_dssp ----CEEEEEEEESCSCTTT---------------------CCEEEEEEEEEE-TTE---------EEEEEEEE-CBCSS
T ss_pred CcCCCEEEEEEECCCCCCCC---------------------CeEEEEEEEEEE-CCE---------EEEEEEEE-ECcCC
Confidence 46679999999999984210 149999999886 343 23356666 33332
Q ss_pred CccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhc--CCCCCCCHHHHHH
Q 023963 111 DVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLT--CKDLPETQACFFD 188 (274)
Q Consensus 111 d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~--~~~LP~~~~~F~~ 188 (274)
..++.+.+ -+|+.=..+. .+.+.....+.+.. .+ . +-..|++++.+|+.+|.+.+. |.+.|.
T Consensus 57 -~i~~~~~~---i~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~~------- 120 (186)
T 2p1j_A 57 -EISRKSSE---ITGITQEMLE-NKRSIEEVLPEFLG--FL-E-DSIIVAHNANFDYRFLRLWIKKVMGLDWE------- 120 (186)
T ss_dssp -CCCHHHHH---HHCCCHHHHT-TCCBHHHHHHHHHH--HS-S-SCEEEETTHHHHHHHHHHHHHHHHCCCCC-------
T ss_pred -CCCHHHhh---hcCCCHHHHh-cCCCHHHHHHHHHH--HH-C-CCEEEEECcHHHHHHHHHHHHHcCCCCCC-------
Confidence 34444443 3788755443 46666554444432 22 1 236788888999999877653 233221
Q ss_pred HHHhhCCCcccHHHHHHHhhhc-cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHh
Q 023963 189 LIKMYFPTLYDIKHLMKFCNSL-HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 189 ~l~~~FP~iyD~K~la~~~~~l-~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
..++||..+++...+. ..+|+.+++.+|++..+ .|.|-.|+..|+.+|.+|.+.
T Consensus 121 ------~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 121 ------RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp ------CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHHHH
Confidence 2477998888765422 35899999999998765 699999999999999998765
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.57 E-value=1.9e-06 Score=78.58 Aligned_cols=174 Identities=12% Similarity=0.033 Sum_probs=117.5
Q ss_pred CCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeecCCCCC-
Q 023963 34 YPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE-NGNLPKCGTDKYCLWQFNFREFSPDED- 111 (274)
Q Consensus 34 ~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~-~g~~p~~g~~~~~~wqFNF~~F~~~~d- 111 (274)
-.||++|+|-+|+...+. ...-.|||+|+..++. +|+ ..-.|+.+ .+....
T Consensus 78 ~~~vviD~ETTGl~~~~~-----------------~~~~~IIeIgaV~v~~~~g~---------i~~~f~~l-V~P~~~~ 130 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINT 130 (299)
T ss_dssp SEEEEECCEECCCTTCCT-----------------TCCCCEEEEEEEEEETTTCC---------EEEEEEEE-BCCSSSC
T ss_pred ceEEEEEeecccCCCCCC-----------------CCCCceEEEEEEEEECCCCe---------Eeeeeeee-ecCCCCC
Confidence 368999999999853210 1123499999999986 343 34467776 444332
Q ss_pred ccchhhHHHHHHcCCCccchhhCCCChHHHH----HHHHHcCcccCCCceeEEeecchhHH-HHHHHhc--CCCCCCCHH
Q 023963 112 VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFS----ELLMSSGIVLNDSVHWVTFHSGYDFG-YLLKLLT--CKDLPETQA 184 (274)
Q Consensus 112 ~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~sgLv~~~~v~Wvtfhg~yD~~-yl~k~l~--~~~LP~~~~ 184 (274)
...+.+.+. +||.=..+. +|.+..... +.+-..++- .+....|++++.+|++ ||-+.+. |.++|.
T Consensus 131 ~i~~~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~--- 202 (299)
T 1zbh_A 131 QLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--- 202 (299)
T ss_dssp SCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG---
T ss_pred CCCHHHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc---
Confidence 455666554 788766654 567665533 333332221 1224678888999999 9876653 445552
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhcc---ccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 185 CFFDLIKMYFPTLYDIKHLMKFCNSLH---GGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 185 ~F~~~l~~~FP~iyD~K~la~~~~~l~---~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
++..+.|++.+.....++. .+|..+++.+|++..|..|.|-.|+..|+.+|.+|.+..
T Consensus 203 --------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 203 --------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp --------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 1234779987766542222 489999999999988889999999999999999998875
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.52 E-value=8.2e-07 Score=78.76 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=115.8
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCC---------CCCCCCCCCeeeEEEeeee
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENG---------NLPKCGTDKYCLWQFNFRE 105 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g---------~~p~~g~~~~~~wqFNF~~ 105 (274)
+||++|+|-||+.... =.|||+|+..++.++ .....+.....+-.|+..
T Consensus 13 ~~vv~D~ETTGl~~~~---------------------d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l- 70 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 70 (242)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEE-
T ss_pred eEEEEEeecCCCCCCC---------------------CeeEEEEEEEecCCcccccccccccccccccccchhheeEEE-
Confidence 6999999999985321 249999999886542 100000011245567766
Q ss_pred cCCCCCccchhhHHHHHHcCCCccchhhCCCC-hH-HHHHHHHH--cCcccCCCceeEEeec-chhHHHHHHHhcCCCCC
Q 023963 106 FSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVD-AM-RFSELLMS--SGIVLNDSVHWVTFHS-GYDFGYLLKLLTCKDLP 180 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~-~~-~f~e~l~~--sgLv~~~~v~Wvtfhg-~yD~~yl~k~l~~~~LP 180 (274)
.+... ...+.+.+ -+||.=..+...|+| .. ...+.+.. .++ .+...+|++++ .+|+.||-+.+...-+|
T Consensus 71 i~P~~-~i~~~~~~---i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~~~~r~g~~ 144 (242)
T 3mxm_B 71 IAPGK-ACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLSTP 144 (242)
T ss_dssp CCCSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSSC
T ss_pred ECCCC-CCCHHHHH---hcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHHHHHHcCCC
Confidence 44433 45566654 499999999988863 43 44433332 111 12247888888 99999998887532232
Q ss_pred CCHHHHHHHHHhhCC--CcccHHHHHHHhh-h--------c-cccHHHHHHH-cCCccCCCccccchhhHHHHHHHHHHH
Q 023963 181 ETQACFFDLIKMYFP--TLYDIKHLMKFCN-S--------L-HGGLNKLAEL-LEVERIGICHQAGSDSLLTCCTFMKMK 247 (274)
Q Consensus 181 ~~~~~F~~~l~~~FP--~iyD~K~la~~~~-~--------l-~~~L~~la~~-L~v~r~g~~HqAGsDS~lT~~~F~~l~ 247 (274)
.. ++ .++||-.+++.+. . . .-+|+.+++. +|++..+ +|.|-+|++.|+++|.++.
T Consensus 145 ~~-----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~ 212 (242)
T 3mxm_B 145 SP-----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKP 212 (242)
T ss_dssp CT-----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSH
T ss_pred CC-----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHH
Confidence 11 11 3568877777432 1 1 2379999977 9998754 7999999999999999998
Q ss_pred Hhhc
Q 023963 248 DNFF 251 (274)
Q Consensus 248 ~~~~ 251 (274)
+.+.
T Consensus 213 ~~~~ 216 (242)
T 3mxm_B 213 QALL 216 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.40 E-value=3.3e-06 Score=79.00 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=115.0
Q ss_pred CCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeecCCCCC-
Q 023963 34 YPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE-NGNLPKCGTDKYCLWQFNFREFSPDED- 111 (274)
Q Consensus 34 ~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~-~g~~p~~g~~~~~~wqFNF~~F~~~~d- 111 (274)
-.||+||+|-+|+...+. ...-.|||||+..++. +|+ ..-.|+.+ .+....
T Consensus 128 ~~~vviD~ETTGl~~~~~-----------------~~~deIIEIgaV~vd~~~g~---------i~~~f~~l-VkP~~~~ 180 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINT 180 (349)
T ss_dssp SEEEECCCEECCCTTCCT-----------------TCCCCEEECCEEEEETTTTE---------EEEEECCB-EECSSSC
T ss_pred CeEEEEEEecCCCCCcCC-----------------CCCCeEEEEEEEEEECCCce---------EeEEEEEE-ECCCCCC
Confidence 368999999999853210 1123499999999985 343 34456666 333332
Q ss_pred ccchhhHHHHHHcCCCccchhhCCCChHHHH----HHHHHcCcccCCCceeEEeecchhHH-HHHHHhc--CCCCCCCHH
Q 023963 112 VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFS----ELLMSSGIVLNDSVHWVTFHSGYDFG-YLLKLLT--CKDLPETQA 184 (274)
Q Consensus 112 ~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~sgLv~~~~v~Wvtfhg~yD~~-yl~k~l~--~~~LP~~~~ 184 (274)
...+.+.+. +||.=..+. .|.+..... +.+-...+- .+....|++++.+|+. ||-+.+. |.++|.
T Consensus 181 ~I~~~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~--- 252 (349)
T 1zbu_A 181 QLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--- 252 (349)
T ss_dssp SCCHHHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG---
T ss_pred CCCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc---
Confidence 455666554 777766554 465555433 333332221 1224678888999999 9876553 444442
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhcc---ccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 185 CFFDLIKMYFPTLYDIKHLMKFCNSLH---GGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 185 ~F~~~l~~~FP~iyD~K~la~~~~~l~---~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
++-.+.|++.+.....++. .+|..+++.+|++..|..|.|-.|+..|+.+|.+|.+..
T Consensus 253 --------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 253 --------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp --------GGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------ccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1224779987766542332 489999999999988889999999999999999998874
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.38 E-value=4.2e-06 Score=81.47 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=114.2
Q ss_pred hhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCC
Q 023963 31 VDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDE 110 (274)
Q Consensus 31 i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~ 110 (274)
+...+||++|+|-+|+.... =.|||+|...++.+|+.- ...|+.+ .....
T Consensus 6 ~~~~~~vv~DlETTGl~p~~---------------------d~IIEIgaV~vd~~g~ii--------~~~f~~l-VkP~~ 55 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPAL---------------------DRPAQFAAIRTDSEFNVI--------GEPEVFY-CKPAD 55 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTT---------------------SCEEEEEEEEECTTSCBC--------SCCEEEE-BCCCT
T ss_pred CCCCCEEEEEEECCCCCCCC---------------------CeEEEEEEEEEECCCeEE--------eeeeEEE-ECCCC
Confidence 45678999999999984210 149999999998777632 1126666 55544
Q ss_pred Cc-cchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEee-cchhHHHHHHHhcCCCCCCCHHHHHH
Q 023963 111 DV-YAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFH-SGYDFGYLLKLLTCKDLPETQACFFD 188 (274)
Q Consensus 111 d~-~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfh-g~yD~~yl~k~l~~~~LP~~~~~F~~ 188 (274)
+. .+++++ .-+||.=..+...|.+...+.+.+.. .+..++..+|+++ -.+|..+|-+.+...-+|.-.
T Consensus 56 ~ilp~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~----- 125 (482)
T 2qxf_A 56 DYLPQPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA----- 125 (482)
T ss_dssp TCCCCHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSG-----
T ss_pred CCCCCHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccc-----
Confidence 43 356666 44999988888889885554444332 1111345678887 489999998776532222100
Q ss_pred HHHhh--CCCcccHHHHHHHhhh--------------c-cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHh
Q 023963 189 LIKMY--FPTLYDIKHLMKFCNS--------------L-HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 189 ~l~~~--FP~iyD~K~la~~~~~--------------l-~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
..+ ....+||--+++.+.. . .-+|+.+++.+|++. +.+|.|-+|++.|+.+|.+|++.
T Consensus 126 --~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~-~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 126 --WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp --GGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHHHH
T ss_pred --cccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 011 0135677666665431 1 237999999999986 45799999999999999998764
No 18
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.35 E-value=5.9e-06 Score=72.21 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=109.4
Q ss_pred CCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCC------CC---CCCCCCCeeeEEEeee
Q 023963 34 YPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENG------NL---PKCGTDKYCLWQFNFR 104 (274)
Q Consensus 34 ~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g------~~---p~~g~~~~~~wqFNF~ 104 (274)
.+||++|+|-||+... .-.|||+|+..++.++ .. +.. ....-.|+.+
T Consensus 10 ~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~---~~i~~~f~~l 65 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV---------------------EPEIAELSLFAVHRSSLENPEHDESGALVL---PRVLDKLTLC 65 (238)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBC---CSSCEEEEEE
T ss_pred CeEEEEEeeCCCcCCC---------------------CCcEEEEEEEEecccccccccccccccccc---cccceeeEEE
Confidence 4799999999998421 1249999999987531 00 000 0123457766
Q ss_pred ecCCCCCccchhhHHHHHHcCCCccchhhCCCChH--HHHHHHHH--cCcccCCCceeEEeec-chhHHHHHHHhc--CC
Q 023963 105 EFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAM--RFSELLMS--SGIVLNDSVHWVTFHS-GYDFGYLLKLLT--CK 177 (274)
Q Consensus 105 ~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~--~f~e~l~~--sgLv~~~~v~Wvtfhg-~yD~~yl~k~l~--~~ 177 (274)
.+... ...+.+.+ -+||.=..+...|.+.. ...+.+.. .++ .+...+|++++ .+|+.||.+.+. |.
T Consensus 66 -v~P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~--~~~~~lVahN~~~FD~~fL~~~~~~~g~ 138 (238)
T 1y97_A 66 -MCPER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQ--AGPICLVAHNGFDYDFPLLCAELRRLGA 138 (238)
T ss_dssp -CCCSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTS--CSSEEEEETTTTTTHHHHHHHHHHHHTC
T ss_pred -ECCCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhC--CCCCEEEecCchhhhHHHHHHHHHHcCC
Confidence 44433 44555554 38888887776676642 33333321 111 12257888888 999999977663 33
Q ss_pred CCCCCHHHHHHHHHhhCCCcccHHHHHHHhh----------hc-cccHHHHHHH-cCCccCCCccccchhhHHHHHHHHH
Q 023963 178 DLPETQACFFDLIKMYFPTLYDIKHLMKFCN----------SL-HGGLNKLAEL-LEVERIGICHQAGSDSLLTCCTFMK 245 (274)
Q Consensus 178 ~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~----------~l-~~~L~~la~~-L~v~r~g~~HqAGsDS~lT~~~F~~ 245 (274)
++|.. -.++||..+++... +. .-+|+.+++. +|++.. ..|.|-.|++.|+.+|.+
T Consensus 139 ~~~~~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~ 205 (238)
T 1y97_A 139 RLPRD------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLH 205 (238)
T ss_dssp CCCTT------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHH
T ss_pred CCCCC------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHH
Confidence 44421 13678877777653 22 3479999994 998753 579999999999999999
Q ss_pred HHHhhc
Q 023963 246 MKDNFF 251 (274)
Q Consensus 246 l~~~~~ 251 (274)
|.+.++
T Consensus 206 l~~~~~ 211 (238)
T 1y97_A 206 RAAELL 211 (238)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 887754
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.23 E-value=6.7e-06 Score=75.94 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=114.2
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCC---------CCCCCCCCeeeEEEeeee
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGN---------LPKCGTDKYCLWQFNFRE 105 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~---------~p~~g~~~~~~wqFNF~~ 105 (274)
+||.+|+|-+|+.... =.|||+|+..++.++. .+..+........|+..
T Consensus 13 tfVv~DlETTGL~~~~---------------------d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~l- 70 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 70 (314)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEE-
T ss_pred CEEEEEEECCCCCCCC---------------------CeEEEEEEEEEECCccccccccccccccccccceeeeeEEEE-
Confidence 5999999999985321 2499999999875421 00000011245667776
Q ss_pred cCCCCCccchhhHHHHHHcCCCccchhhCCCC-h-HHHHHHHHH--cCcccCCCceeEEeec-chhHHHHHHHhcCCCCC
Q 023963 106 FSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVD-A-MRFSELLMS--SGIVLNDSVHWVTFHS-GYDFGYLLKLLTCKDLP 180 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~-~-~~f~e~l~~--sgLv~~~~v~Wvtfhg-~yD~~yl~k~l~~~~LP 180 (274)
.+... .+.+++.+. |||.=+.....|++ . .+..+.+.. .+. .+...+|+++| .+|++||-+.+...-++
T Consensus 71 I~P~~-~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~el~r~Gl~ 144 (314)
T 3u3y_B 71 IAPGK-ACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLSTP 144 (314)
T ss_dssp CBCSS-CCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSSC
T ss_pred ECCCC-CCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 44433 466666655 99999999999985 3 244443322 111 12357888884 89999998877532222
Q ss_pred CCHHHHHHHHHhhCC-CcccHHHHHHHh-hh---------ccccHHHHHHH-cCCccCCCccccchhhHHHHHHHHHHHH
Q 023963 181 ETQACFFDLIKMYFP-TLYDIKHLMKFC-NS---------LHGGLNKLAEL-LEVERIGICHQAGSDSLLTCCTFMKMKD 248 (274)
Q Consensus 181 ~~~~~F~~~l~~~FP-~iyD~K~la~~~-~~---------l~~~L~~la~~-L~v~r~g~~HqAGsDS~lT~~~F~~l~~ 248 (274)
... .+ .+.|+--+++.+ +. -.-+|+.+++. +|++.. ..|.|-+|++.|+++|.++.+
T Consensus 145 ~~~----------~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~ 213 (314)
T 3u3y_B 145 SPL----------DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQ 213 (314)
T ss_dssp CTT----------TTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHH
T ss_pred CCC----------CCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 100 01 145665544422 11 12379999999 999865 589999999999999999988
Q ss_pred hhc
Q 023963 249 NFF 251 (274)
Q Consensus 249 ~~~ 251 (274)
.+.
T Consensus 214 ~~l 216 (314)
T 3u3y_B 214 ALL 216 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.20 E-value=6.9e-06 Score=69.71 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=96.8
Q ss_pred cCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCc
Q 023963 33 DYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDV 112 (274)
Q Consensus 33 ~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~ 112 (274)
..+||++|+|.+|+.... .-.|+|+|+. +.+|+ .. |+.+ ..... .
T Consensus 4 ~~~~vviD~ETTGl~~~~--------------------~~~iiei~~v--~~~g~---------~i--~~~l-V~P~~-~ 48 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHR--------------------ESGLARCSLV--NVHGA---------VL--YDKF-IRPEG-E 48 (189)
T ss_dssp --CEEEEEEEEEEETTTT--------------------EEEEEEEEEE--CTTCC---------EE--EEEE-EECSS-C
T ss_pred CCeEEEEEeECcCcCCCC--------------------CceEEEEEEE--eCCCC---------EE--EeeE-ecCCC-C
Confidence 458999999999984210 1247799874 44553 12 5544 33322 3
Q ss_pred cchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 023963 113 YAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKM 192 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~ 192 (274)
..+.+.+. +||.=..+. ++.+.....+.+.. ++ ++-.+|.++..+|+.+|-+ .+|.
T Consensus 49 i~~~~~~i---~GIt~~~l~-~a~~~~~v~~~~~~--~l--~~~~lV~hn~~fD~~~L~~-----~~~~----------- 104 (189)
T 1wlj_A 49 ITDYRTRV---SGVTPQHMV-GATPFAVARLEILQ--LL--KGKLVVGHDLKHDFQALKE-----DMSG----------- 104 (189)
T ss_dssp EEECCHHH---HCCCHHHHT-TCEEHHHHHHHHHH--HH--TTSEEEESSHHHHHHHTTC-----CCTT-----------
T ss_pred CCccccCC---CCCCHHHHc-CCCCHHHHHHHHHH--HH--CCCEEEECCcHHHHHHHHH-----hCCC-----------
Confidence 44444443 666555443 35555443333322 11 1236777777899987643 2331
Q ss_pred hCCCcccHHHHHHHhh--hc----cccHHHHHHH-cCCccCCC--ccccchhhHHHHHHHHHHHHhhc
Q 023963 193 YFPTLYDIKHLMKFCN--SL----HGGLNKLAEL-LEVERIGI--CHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 193 ~FP~iyD~K~la~~~~--~l----~~~L~~la~~-L~v~r~g~--~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
..++||..+....+ .+ ..+|..+++. +|++..+. .|.|-.|+..|+.+|.+|.+.+.
T Consensus 105 --~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 105 --YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp --CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 13678866543221 22 3589999998 89987554 99999999999999999988865
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.99 E-value=0.00012 Score=61.07 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=97.3
Q ss_pred cCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCC-
Q 023963 33 DYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDED- 111 (274)
Q Consensus 33 ~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d- 111 (274)
+-+||++|+|-+|+.... =.|||+|...++.+|+ .....|+.+ .+....
T Consensus 4 ~~~~v~iD~ETTGl~~~~---------------------~~IieIg~v~~~~~~~--------~~~~~~~~l-v~P~~~i 53 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPER---------------------DRIIEIATLVTDANLN--------ILAEGPTIA-VHQSDEQ 53 (180)
T ss_dssp GGCEEEEEEEESSSCTTT---------------------CCEEEEEEEEECTTCC--------EEEEEEEEE-CCCCHHH
T ss_pred CCcEEEEEeeCCCCCCCC---------------------CceEEEEEEEEcCCCc--------EecCCcceE-ECCCHHH
Confidence 458999999999984210 1499999998876554 122236766 443321
Q ss_pred --ccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHH--cCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHH
Q 023963 112 --VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMS--SGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFF 187 (274)
Q Consensus 112 --~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~ 187 (274)
..++.+.+.-.-+||.=.. .++|.+.....+.+.. .+.....+..+|.++..+|+.+|-+.+. .+
T Consensus 54 ~~~i~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~---------~~- 122 (180)
T 2igi_A 54 LALMDDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP---------EL- 122 (180)
T ss_dssp HTTCCHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCH---------HH-
T ss_pred hhcCCHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHH---------Hh-
Confidence 1233333332336665444 3456666554444332 1211111235666666999999877642 11
Q ss_pred HHHHhhCC-CcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhhc
Q 023963 188 DLIKMYFP-TLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 188 ~~l~~~FP-~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
...++ ...|+..|....+.+..++. .+++ ....|.|-.|+..|+.+|.++++.+|
T Consensus 123 ---~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~-~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 123 ---EAYFHYRYLDVSTLKELARRWKPEIL-----DGFT-KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ---HHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC-CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ---ccCCCcceeeHHHHHHHHHHhChHhh-----hCCC-CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 23343 46785444322222222221 1452 45689999999999999999999876
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.52 E-value=0.00065 Score=57.65 Aligned_cols=170 Identities=13% Similarity=0.078 Sum_probs=97.7
Q ss_pred hcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCC
Q 023963 32 DDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDED 111 (274)
Q Consensus 32 ~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d 111 (274)
...+||++|+|-||+.... =.|||+|....+ |+.. ...-.|+.. .+....
T Consensus 7 ~~~~~vviD~ETTGl~p~~---------------------d~IieIgav~~~--~~~~------~~~~~~~~~-v~p~~~ 56 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDR---------------------DSIIEIATIVTD--AQLN------VLAEGPELA-IAHSLE 56 (194)
T ss_dssp -CCEEEEEEEEESCSCTTT---------------------CCEEEEEEEEEE--TTCC------EEEECCCEE-CCCCHH
T ss_pred CCCCEEEEEeECCCCCCCC---------------------CccEEEEEEEEc--CCcc------eeccCceEE-EeCCHH
Confidence 5568999999999985210 149999987743 4321 122335554 333221
Q ss_pred c---cchhhHHHHHHcCCCccchhhCCCChHHHHHHHHH--cCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHH
Q 023963 112 V---YAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMS--SGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACF 186 (274)
Q Consensus 112 ~---~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F 186 (274)
. ..+...+.-.-+||.=. ..+.|.+.....+.+.. .+-+......+|.++..+|++||-+.+. .+
T Consensus 57 i~~~~~~~~~~~~~itGIt~~-~l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~---------~~ 126 (194)
T 2gbz_A 57 TLEAMDEWNRNQHRRSGLWQR-VLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS---------RL 126 (194)
T ss_dssp HHHTSCSHHHHHHHHHTHHHH-HHHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCH---------HH
T ss_pred HhhccchHHHHHHHhhCCCHH-HHhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHH---------Hh
Confidence 1 11112222233677544 35567777655444432 1222122335888888999999987652 11
Q ss_pred HHHHHhhCC-CcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhhc
Q 023963 187 FDLIKMYFP-TLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 187 ~~~l~~~FP-~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
...++ +..|+..+.+.++.+...| ++ ++ .....|.|-+|+..|+.+|..+++.++
T Consensus 127 ----~~~~~~~~~d~~~l~~l~~~~~p~~---~~--~i-~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 127 ----ERYFHYRNLDVSTIKELARRWAPAV---AS--GF-AKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp ----HHHSCSCEEEHHHHHHHHHHHCGGG---GT--TC-CCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred ----cccCCCccccHHHHHHHHHHhCHHH---Hh--CC-CCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 23343 4668876554333332221 11 23 345689999999999999999998876
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.25 E-value=0.011 Score=50.12 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=102.7
Q ss_pred hcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCC-
Q 023963 32 DDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDE- 110 (274)
Q Consensus 32 ~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~- 110 (274)
.+.+||++|+|-||+.... =.|||+|.-..+.+++. ....+.+..-+...
T Consensus 7 ~~~~~v~~D~ETTGL~p~~---------------------d~IiEIgaV~~d~~~~i--------~~~~~~~~i~~p~~~ 57 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER---------------------DRIIEIATIVTNSHLDI--------LAEGPAFAIHQPDKL 57 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT---------------------CCEEEEEEEEECTTCCE--------EEECCCEECCCCHHH
T ss_pred CCCcEEEEEEECCCCCCCC---------------------CceEEEEEEEEcCCeEE--------eeeeEEEEEeCCccc
Confidence 4568999999999996421 13999999866544331 11112333112211
Q ss_pred -CccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHH--cCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHH
Q 023963 111 -DVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMS--SGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFF 187 (274)
Q Consensus 111 -d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~ 187 (274)
+...+.+.+--.-+|+. ++..+.|.+.....+.+.. .+.+...+...|..+-.+|.+||-+-+-
T Consensus 58 l~~~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~------------ 124 (186)
T 3tr8_A 58 LTAMDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP------------ 124 (186)
T ss_dssp HTTSCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCH------------
T ss_pred cccCCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHH------------
Confidence 11234444444456876 7777888888776665543 1112113335566667899999987641
Q ss_pred HHHHhhCC-CcccHH---HHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhhcC
Q 023963 188 DLIKMYFP-TLYDIK---HLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNFFK 252 (274)
Q Consensus 188 ~~l~~~FP-~iyD~K---~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~~~ 252 (274)
.+...|+ ++.|+- .||+. +..++.. ++ .....|.|=.|+.-|...+.-.++.+|.
T Consensus 125 -~~~~~~~~~~iDvsTl~elar~---~~P~~~~-----~~-~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 125 -RLNQFFHYRHLDVTTLKILAQR---WAPQIAA-----AH-IKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp -HHHHHSCSCEEEHHHHHHHHHH---HCHHHHT-----TS-CCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -HcCCCCCCcEEeHHHHHHHHHH---HCccccc-----cC-CCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 1234564 588933 35553 3333321 33 3457999999999999999988888875
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=96.54 E-value=0.062 Score=53.28 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=61.7
Q ss_pred ccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhh-c-cccHHHHHHHc-CCccC-
Q 023963 151 VLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNS-L-HGGLNKLAELL-EVERI- 226 (274)
Q Consensus 151 v~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~-l-~~~L~~la~~L-~v~r~- 226 (274)
+.++++.||.++..+|+.+|.+ .|-++| +.++||..++..+.. . ..+|..|++.+ ++..+
T Consensus 86 L~d~~i~kV~hnak~D~~~L~~--~Gi~l~--------------~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILAN--YGIELR--------------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHHT--TTCCCC--------------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HcCCCCeEEEECcHHHHHHHHH--CCCCCC--------------CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 3356789999999999998876 243322 237899999887752 2 46899999987 76532
Q ss_pred -----CC---------------ccccchhhHHHHHHHHHHHHhh
Q 023963 227 -----GI---------------CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 227 -----g~---------------~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
|+ .|-|..|+.+|..+|-+|....
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1458899999999999998765
No 25
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=70.35 E-value=35 Score=28.66 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=42.7
Q ss_pred CceeEEeecchhHHHHHHHhcC-CCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCC-ccCCCcccc
Q 023963 155 SVHWVTFHSGYDFGYLLKLLTC-KDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEV-ERIGICHQA 232 (274)
Q Consensus 155 ~v~Wvtfhg~yD~~yl~k~l~~-~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v-~r~g~~HqA 232 (274)
.+.=++..++||...|.+++-. ..||.....| ..|++.+...+.. -++ ++.+..|.|
T Consensus 106 ~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~p~~----------~~dlr~~~~~~g~-----------~~lp~~~~~~H~A 164 (190)
T 4hec_A 106 SIELWAWVGAYDHVALCQLWGPMTALPPTVPRF----------TRELRQLWEDRGC-----------PRMPPRPRDVHDA 164 (190)
T ss_dssp EEEEEESSCHHHHHHHHTTTSSGGGSCTTSCSS----------CEEHHHHHHHTTC-----------CCCCC-----CCH
T ss_pred CCEEEEecccccHHHHHHHhcccccCCcccchh----------hHHHHHHHHHcCC-----------CCCCCCCCCCcCc
Confidence 4445678899999998876531 2455443211 3355555443320 011 224568999
Q ss_pred chhhHHHHHHHHHHHH
Q 023963 233 GSDSLLTCCTFMKMKD 248 (274)
Q Consensus 233 GsDS~lT~~~F~~l~~ 248 (274)
=.||-..+.+|..|..
T Consensus 165 L~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 165 LVDARDQLRRFRLITS 180 (190)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988865
No 26
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=54.16 E-value=30 Score=32.30 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHc-CCccCCC---
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELL-EVERIGI--- 228 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L-~v~r~g~--- 228 (274)
++++.+|.+...+|+-.|.+-+ |- ...+++||...+..+..-..||..|++.+ ++.- ++
T Consensus 157 d~~i~KV~h~~k~Dl~~L~~~~-Gi---------------~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l-~K~~~ 219 (410)
T 2hbj_A 157 NPSIVKVFHGAFMDIIWLQRDL-GL---------------YVVGLFDTYHASKAIGLPRHSLAYLLENFANFKT-SKKYQ 219 (410)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-CC---------------CCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCC-CCTTT
T ss_pred CCCceEEEEehHHHHHHHHHHc-CC---------------CcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCC-Ccccc
Confidence 6778999999999998887643 32 12248899988887752257899999875 5431 11
Q ss_pred -------------ccccchhhHHHHHHHHHHHHhhc
Q 023963 229 -------------CHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 229 -------------~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
.+-|..|++.+..++-+|+...-
T Consensus 220 ~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 220 LADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12377899999999999888764
No 27
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=43.72 E-value=28 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHcCCccCCC---ccccchhhHHHHHHHHHHHHhh
Q 023963 216 KLAELLEVERIGI---CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 216 ~la~~L~v~r~g~---~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
-+++.|+++.++. ..+.|.||+.+.+.-.+|++.+
T Consensus 24 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 61 (93)
T 4i4d_A 24 IWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELV 61 (93)
T ss_dssp HHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHh
Confidence 3567788877654 5689999999999999998886
No 28
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=42.40 E-value=52 Score=29.93 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=57.9
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhh-ccccHHHHHHHc-CCccCC---
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNS-LHGGLNKLAELL-EVERIG--- 227 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~-l~~~L~~la~~L-~v~r~g--- 227 (274)
++++.+|.+...+|+..|.+.+ |-. ...++||...+..+.- ..-||..|++.. ++.-..
T Consensus 72 d~~i~Kv~h~~k~Dl~~L~~~~-Gi~---------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~ 135 (375)
T 1yt3_A 72 DPSITKFLHAGSEDLEVFLNVF-GEL---------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSES 135 (375)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-SSC---------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTT
T ss_pred CCCceEEEeeHHHHHHHHHHHc-CCC---------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcc
Confidence 5678899988889998886633 311 1257899988887752 245899999875 543210
Q ss_pred ------------CccccchhhHHHHHHHHHHHHhhc
Q 023963 228 ------------ICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 228 ------------~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
..+-|..|++.+..++-+|....-
T Consensus 136 ~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 136 RTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112377899999999999887653
No 29
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=41.54 E-value=29 Score=24.88 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHcCCccCCC---ccccchhhHHHHHHHHHHHHhh
Q 023963 216 KLAELLEVERIGI---CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 216 ~la~~L~v~r~g~---~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
-+++.|+++.++. ..+.|.||+.+.+.-.++++.+
T Consensus 22 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 22 IWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp HHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHH
Confidence 3567788877654 4589999999999999998885
No 30
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=36.30 E-value=66 Score=30.26 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=57.4
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHH-cCCccC-----
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAEL-LEVERI----- 226 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~-L~v~r~----- 226 (274)
++++.+|.+...+|+--|.+-+ |-. ...++||...+..+..-..||..|++. ||+.-.
T Consensus 180 dp~i~KV~H~~k~Dl~~L~~~~-Gi~---------------~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~~ 243 (428)
T 3saf_A 180 DPAIVKVFHGADSDIEWLQKDF-GLY---------------VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQL 243 (428)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-CCC---------------CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTTT
T ss_pred CCCceEEEeehHHHHHHHHHHc-CCC---------------cCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCccccc
Confidence 6778888888889988665443 321 234789999888875324689999876 554310
Q ss_pred ----------CCccccchhhHHHHHHHHHHHHhhc
Q 023963 227 ----------GICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 227 ----------g~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
...+-|..|+..+...+-+|+...-
T Consensus 244 sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 244 ADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp SCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113478899999999999887754
No 31
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=30.68 E-value=34 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.0
Q ss_pred chhhHHHHHHcCCCcc-----------------chhhCCCChHHHHHHHHHcCc
Q 023963 114 AYDSIKLLSRSGIDFK-----------------KNKEKGVDAMRFSELLMSSGI 150 (274)
Q Consensus 114 ~~~Si~fL~~~G~DF~-----------------k~~~~GI~~~~f~e~l~~sgL 150 (274)
-|++++.|.+.|||+= -...+||+...+-+.|-..|.
T Consensus 22 ~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 22 HPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp CGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 4889999999998874 236788999888888888775
No 32
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=28.75 E-value=58 Score=26.62 Aligned_cols=82 Identities=13% Similarity=-0.000 Sum_probs=53.3
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCccc-HHHHHHHhhh-ccccHHHHHHHc-CCccC---
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYD-IKHLMKFCNS-LHGGLNKLAELL-EVERI--- 226 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD-~K~la~~~~~-l~~~L~~la~~L-~v~r~--- 226 (274)
+++++.|.+..-+|+..|.+.. |-. ..+++| |...+..+.. -.-||+.+++.. +..-+
T Consensus 94 d~~i~Kv~~~~k~D~~~L~~~~-gi~---------------~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k 157 (208)
T 2e6m_A 94 NKSIKKAGVGIEGDQWKLLRDF-DVK---------------LESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDK 157 (208)
T ss_dssp CTTSEEEESSHHHHHHHHHHHH-CCC---------------CCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCH
T ss_pred CCCceEEEEeeHHHHHHHHHHC-CCC---------------CCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCC
Confidence 5678889888888988776543 321 224778 5554444432 245899988875 53211
Q ss_pred ----------C----CccccchhhHHHHHHHHHHHHhh
Q 023963 227 ----------G----ICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 227 ----------g----~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
. ..+-|..|++.+...+-+|+...
T Consensus 158 ~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 158 SIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp HHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 12347899999999999998765
No 33
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=27.69 E-value=21 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=34.6
Q ss_pred EeecchhHHHHHHHhcCCCC-CCCHHHHHHHHHhhC---CCcccHHH
Q 023963 160 TFHSGYDFGYLLKLLTCKDL-PETQACFFDLIKMYF---PTLYDIKH 202 (274)
Q Consensus 160 tfhg~yD~~yl~k~l~~~~L-P~~~~~F~~~l~~~F---P~iyD~K~ 202 (274)
.|-+|.-||=|++-++|.|. |+|...-.+.+..-. |.+.|+|.
T Consensus 24 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 70 (122)
T 2ogf_A 24 VFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKV 70 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 47789999999999999999 999887777666544 77777654
No 34
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=26.49 E-value=91 Score=26.11 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=55.7
Q ss_pred cCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHH-hhh---ccccHHHHHHH-cCCcc-
Q 023963 152 LNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKF-CNS---LHGGLNKLAEL-LEVER- 225 (274)
Q Consensus 152 ~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~-~~~---l~~~L~~la~~-L~v~r- 225 (274)
.+++++.|-+....|+..|.+.+ |- . ...++|+..+|.. +.. ..-||+.+++. ||++=
T Consensus 105 ~d~~i~Kvg~~~~~D~~~L~~~~-g~-~--------------~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK 168 (206)
T 1vk0_A 105 ASKFVTFVGVQIEEDLDLLRENH-GL-V--------------IRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLG 168 (206)
T ss_dssp TCSSSEEEESSCHHHHHHHHHHH-CC-C--------------CSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCH
T ss_pred cCCCceEEEeccHHHHHHHHHhc-CC-C--------------cCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCC
Confidence 36788888888899999886654 21 1 1258899877644 432 24689998876 45432
Q ss_pred C--------------CCccccchhhHHHHHHHHHHHH
Q 023963 226 I--------------GICHQAGSDSLLTCCTFMKMKD 248 (274)
Q Consensus 226 ~--------------g~~HqAGsDS~lT~~~F~~l~~ 248 (274)
. .+.+-|-.|++....+|-+|++
T Consensus 169 ~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 169 QLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1234588999999999998864
No 35
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=25.30 E-value=25 Score=27.64 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=34.6
Q ss_pred EeecchhHHHHHHHhcCCCC-CCCHHHHHHHHHhhC---CCcccHHH
Q 023963 160 TFHSGYDFGYLLKLLTCKDL-PETQACFFDLIKMYF---PTLYDIKH 202 (274)
Q Consensus 160 tfhg~yD~~yl~k~l~~~~L-P~~~~~F~~~l~~~F---P~iyD~K~ 202 (274)
.|.+|.-||=|++-++|.|. |+|...-.+.+..-. |.+.|+|.
T Consensus 19 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 65 (121)
T 2i52_A 19 FFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRI 65 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHhhhhhhhhhhhccCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 47788999999999999999 999888777766544 77777654
No 36
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=25.29 E-value=76 Score=22.66 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhhCCCc
Q 023963 169 YLLKLLTCKDLPETQACFFDLIKMYFPTL 197 (274)
Q Consensus 169 yl~k~l~~~~LP~~~~~F~~~l~~~FP~i 197 (274)
|+.-+-...--|-+.+.|-++++..||.+
T Consensus 26 Y~~~C~~~~~~pl~~a~FGK~ir~~FP~l 54 (76)
T 1dp7_P 26 YLLHSQEQKLEPVNAASFGKLIRSVFMGL 54 (76)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHCCCc
Confidence 44444445677899999999999999986
No 37
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=24.42 E-value=91 Score=30.22 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=40.7
Q ss_pred CcccHHHHHHHhh-hccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 196 TLYDIKHLMKFCN-SLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 196 ~iyD~K~la~~~~-~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
.++||..+|..+. + ..+|..|++.+... . .|.|..|+..|...|-+|....
T Consensus 77 ~~fDT~laAyLL~p~-~~~L~~La~~yl~~-~--gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 77 PGDDPMLLAYLLDPS-NTTPEGVARRYGGE-W--TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp BCCCHHHHHHHHCTT-CCCHHHHHHHHTSC-C--CSCHHHHHHHHHHHHHHHHHHT
T ss_pred cceeHHHHHHHhCCC-CCCHHHHHHHHhhh-h--ccchHHHHHHHHHHHHHHHHHH
Confidence 4679999998875 5 67999999886532 3 3567899999999999998876
No 38
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=23.12 E-value=1.3e+02 Score=27.15 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHHhhcCC--eeEEeec------ccccccccCCCCCCChHHHHHHHHhccc--ccceeeeeeeee
Q 023963 17 NDNLEHEFSLIRDIVDDYP--YIAMDTE------FPGIVLRSIGNFKSSSEYNYQNLKVNVD--LLKLIQLGLTFT 82 (274)
Q Consensus 17 ~~N~~~el~~I~~~i~~~~--fIAiDtE------FpGv~~~p~~~~~~t~e~rY~~lr~nvd--~~~iiQlGit~~ 82 (274)
+.++++.+..+.+.+.... ||++|.. +||+.....+ -.+..|--..+|.-.+ ..+++-+.|+=+
T Consensus 209 ~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~pg--Glt~~e~~~il~~l~~~~~~~vvg~DivEv 282 (330)
T 4g3h_A 209 RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENN--GLSFDELKQLLGLLLESFKDRLKAVEVTEY 282 (330)
T ss_dssp HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCSS--CBCHHHHHHHHHHHHHHTTTTEEEEEEECC
T ss_pred hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCCC--CCCHHHHHHHHHHHHhhCCCCEEEEEEEEE
Confidence 5566777888888887655 9999974 4776543222 2366777777777666 566665555533
No 39
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=22.53 E-value=41 Score=26.31 Aligned_cols=39 Identities=8% Similarity=0.162 Sum_probs=26.2
Q ss_pred hhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHH
Q 023963 131 NKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQAC 185 (274)
Q Consensus 131 ~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~ 185 (274)
+...||.+......++.|.|. +++.++.+|.+||+=..+
T Consensus 39 l~~~~I~~~~vQ~qmL~sHl~----------------Amv~Rs~~GE~LPeVd~s 77 (119)
T 3nuf_A 39 AAAAEIHFTDLQLQVLTNHLI----------------EMLGRSKSGEQLPAVDPT 77 (119)
T ss_dssp HHHTTCCCCHHHHHHHHHHHH----------------HHHHHHHHCCCCCCCCGG
T ss_pred HHhcCCCCCHHHHHHHHHHHH----------------HHHHHhccCCcCCccCHH
Confidence 344555555555555555444 588999999999986653
No 40
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=22.16 E-value=65 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=20.8
Q ss_pred cCcccHHHHHHHHHH-Hh-hcCCeeEEeeccc
Q 023963 15 VWNDNLEHEFSLIRD-IV-DDYPYIAMDTEFP 44 (274)
Q Consensus 15 Vw~~N~~~el~~I~~-~i-~~~~fIAiDtEFp 44 (274)
+....+......+.+ .+ ...+.|++||||.
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~ 56 (206)
T 1vk0_A 25 GSSTDISPYLSLIREDSILNGNRAVIFDVYWD 56 (206)
T ss_dssp CSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred ecHHHHHHHHHHHHHhhhhcCCCEEEEEeecc
Confidence 346667777776633 33 5578999999985
No 41
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=22.16 E-value=58 Score=25.11 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=27.2
Q ss_pred ccchhhHHHHHHcCCCccchhhCCCChHHHH
Q 023963 112 VYAYDSIKLLSRSGIDFKKNKEKGVDAMRFS 142 (274)
Q Consensus 112 ~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~ 142 (274)
..++.+++-|+++|+|...++.+-|+...+.
T Consensus 43 ~~~p~a~~~l~~~Gid~s~~~ar~l~~~~~~ 73 (131)
T 1jf8_A 43 GVNPKAIEAMKEVDIDISNHTSDLIDNDILK 73 (131)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCCCBCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCcccCccccCChHHhc
Confidence 4678999999999999999999999987664
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=21.90 E-value=1.2e+02 Score=22.89 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=35.3
Q ss_pred cCCCCCccchhhHHHHHHcCCCccc--hhhCCCChHHHHHHHHHcCc
Q 023963 106 FSPDEDVYAYDSIKLLSRSGIDFKK--NKEKGVDAMRFSELLMSSGI 150 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~G~DF~k--~~~~GI~~~~f~e~l~~sgL 150 (274)
|....-.....+.++|.++|++|.. ...++.+...+.+.+..+|+
T Consensus 10 Y~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 56 (121)
T 3rdw_A 10 YHNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGF 56 (121)
T ss_dssp ECCTTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence 3444455678899999999999875 46678888889998888875
No 43
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.90 E-value=1.2e+02 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHhhCCCcccHHHHHHHhh
Q 023963 181 ETQACFFDLIKMYFPTLYDIKHLMKFCN 208 (274)
Q Consensus 181 ~~~~~F~~~l~~~FP~iyD~K~la~~~~ 208 (274)
.+..+=.+.|+.+||.+ |...|...+.
T Consensus 16 ~~~~~~v~~L~~MFP~l-D~~vI~~vL~ 42 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNM-DYDIIECVLR 42 (67)
T ss_dssp CCSHHHHHHHHHHCSSS-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC-CHHHHHHHHH
Confidence 34566678899999986 6555554443
No 44
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=20.22 E-value=40 Score=33.66 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=19.3
Q ss_pred ccccchhhHHHHHHHHHHHHhhc
Q 023963 229 CHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 229 ~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
.|-|..|+.+|..+|-+|....-
T Consensus 162 ~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 162 MDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999988753
No 45
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.16 E-value=82 Score=23.89 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=33.9
Q ss_pred CCCccchhhHHHHHHcCCCccc--hhhCCCChHHHHHHHHHcCc
Q 023963 109 DEDVYAYDSIKLLSRSGIDFKK--NKEKGVDAMRFSELLMSSGI 150 (274)
Q Consensus 109 ~~d~~~~~Si~fL~~~G~DF~k--~~~~GI~~~~f~e~l~~sgL 150 (274)
..-.....+.++|.++|++|.. ..+++.+...+.+.+..+|+
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 54 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENSGL 54 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHcCC
Confidence 3444578899999999999875 47788999999999888774
No 46
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=20.06 E-value=85 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCCCccchhhHHHHHHcCCCccc--hhhCCCChHHHHHHHHHcCc
Q 023963 108 PDEDVYAYDSIKLLSRSGIDFKK--NKEKGVDAMRFSELLMSSGI 150 (274)
Q Consensus 108 ~~~d~~~~~Si~fL~~~G~DF~k--~~~~GI~~~~f~e~l~~sgL 150 (274)
...-.....+.++|.++|++|.. ...++.+...+.+.+..+|+
T Consensus 11 ~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 55 (120)
T 3gkx_A 11 YPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGL 55 (120)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHTS
T ss_pred CCCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcCC
Confidence 33445678899999999999875 46688888889988887774
Done!