Query 023963
Match_columns 274
No_of_seqs 149 out of 485
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uoca_ c.55.3.9 (A:) Pop2 RNa 100.0 9.2E-88 6.7E-92 616.1 24.0 260 5-268 6-285 (286)
2 d2d5ra1 c.55.3.9 (A:11-262) CC 100.0 1.8E-87 1.3E-91 604.6 22.5 250 11-265 1-252 (252)
3 d2guia1 c.55.3.5 (A:7-180) N-t 98.8 7.2E-08 5.3E-12 77.0 13.4 171 35-247 1-173 (174)
4 d1w0ha_ c.55.3.5 (A:) Exonucle 98.7 7.6E-07 5.5E-11 72.9 17.1 174 36-249 8-190 (200)
5 d2f96a1 c.55.3.5 (A:19-220) Ri 98.5 8.1E-07 5.9E-11 71.9 12.5 173 36-251 13-196 (202)
6 d1y97a1 c.55.3.5 (A:1-228) Thr 98.4 2.1E-06 1.5E-10 72.2 14.7 178 35-250 9-208 (228)
7 d3b6oa1 c.55.3.5 (A:9-234) Thr 98.2 7.9E-06 5.7E-10 68.5 12.4 179 35-251 5-208 (226)
8 d2qxfa1 c.55.3.5 (A:8-474) Exo 98.2 6E-06 4.4E-10 76.6 11.7 176 34-250 2-194 (467)
9 d1wlja_ c.55.3.5 (A:) Interfer 97.9 8.3E-06 6.1E-10 65.0 7.3 157 35-249 1-163 (173)
10 d1yt3a3 c.55.3.5 (A:1-193) Rib 97.2 0.0013 9.6E-08 53.8 11.3 82 153-250 72-170 (193)
11 d2hbka2 c.55.3.5 (A:129-420) E 96.5 0.0062 4.5E-07 53.3 9.9 84 152-251 154-253 (292)
12 d1kfsa1 c.55.3.5 (A:324-518) E 95.6 0.085 6.2E-06 41.2 12.0 85 150-250 85-193 (195)
13 d2igia1 c.55.3.5 (A:1-180) Oli 84.9 1.3 9.1E-05 33.2 7.2 76 158-251 102-178 (180)
14 d1vk0a_ c.55.3.5 (A:) Hypothet 47.6 11 0.00078 29.8 4.9 81 152-248 105-205 (206)
15 d2gdwa1 a.28.1.2 (A:8-83) Pept 41.9 13 0.00091 24.5 3.8 34 217-250 16-52 (76)
16 d1j9ba_ c.47.1.12 (A:) Arsenat 38.6 12 0.00085 27.7 3.5 36 114-149 13-50 (138)
17 d1bhda_ a.40.1.1 (A:) Utrophin 35.9 12 0.00085 26.5 3.0 44 183-226 36-81 (108)
18 d1g2ha_ a.4.1.12 (A:) Transcri 35.3 19 0.0013 22.8 3.6 37 176-225 11-47 (61)
19 d1z3ea1 c.47.1.12 (A:1-114) Re 33.9 16 0.0012 25.8 3.5 37 113-149 12-50 (114)
20 d1gyza_ a.144.2.1 (A:) Ribosom 33.2 14 0.001 23.8 2.7 25 131-155 9-33 (60)
21 d1sc6a2 c.23.12.1 (A:7-107,A:2 31.3 21 0.0015 26.0 3.8 37 111-147 11-47 (132)
22 d1sh5a2 a.40.1.1 (A:128-237) A 28.8 21 0.0015 25.2 3.4 42 184-226 38-82 (110)
23 d1knya1 a.24.16.1 (A:126-253) 28.2 20 0.0014 26.4 3.0 47 177-223 71-118 (128)
24 d2hhva1 c.55.3.5 (A:298-468) E 27.7 72 0.0053 23.6 6.7 82 153-250 66-168 (171)
25 d2nrha1 c.55.1.13 (A:1-82) Typ 26.3 5 0.00037 27.7 -0.6 42 7-49 33-74 (82)
26 d1xfka_ c.42.1.1 (A:) Formimid 26.1 72 0.0053 26.2 7.0 69 13-83 216-293 (324)
27 d1f80d_ a.28.1.1 (D:) Acyl car 24.9 33 0.0024 22.0 3.5 36 216-251 11-52 (74)
28 d1wgla_ a.5.2.4 (A:) Toll-inte 23.5 63 0.0046 20.4 4.6 31 185-216 11-41 (59)
29 d1rw1a_ c.47.1.12 (A:) Hypothe 22.1 31 0.0022 24.1 3.2 37 113-149 12-50 (114)
30 d1klpa_ a.28.1.1 (A:) Acyl car 22.0 45 0.0033 23.0 4.1 36 216-251 15-56 (115)
31 d2pnga1 a.28.1.1 (A:1-76) Type 21.0 25 0.0018 22.9 2.2 38 214-251 10-53 (76)
32 d1pq3a_ c.42.1.1 (A:) Arginase 20.3 57 0.0041 26.5 5.0 68 14-83 198-275 (306)
No 1
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=9.2e-88 Score=616.14 Aligned_cols=260 Identities=38% Similarity=0.775 Sum_probs=237.7
Q ss_pred CCCCCceEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecC
Q 023963 5 PKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDE 84 (274)
Q Consensus 5 ~~~~~~~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~ 84 (274)
|+++.+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.+++||+|||+|++
T Consensus 6 p~~~~~~i~dVw~~N~~~e~~~i~~~i~~~~fvaiD~EF~Gi~~~~~~~~~~t~d~~Y~~lr~nvd~~~iiQlGlt~f~~ 85 (286)
T d1uoca_ 6 PPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDA 85 (286)
T ss_dssp CCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred CCCCeEEEEEchhhhHHHHHHHHHHHHhcCCEEEEeeeecCcccCCCCCCCCCHHHHHHHHHHhHhhcceeEEeeeeecc
Confidence 78888999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecc
Q 023963 85 NGNLPKCGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSG 164 (274)
Q Consensus 85 ~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~ 164 (274)
+|+.|.. ++++|||||+ |+..+|+|+++||+||+++||||||++++||++.+|+|+|++||++++++++||+|||+
T Consensus 86 ~g~~~~~---~~~~w~FNF~-f~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~~ll~~s~l~~~~~~~wi~fhg~ 161 (286)
T d1uoca_ 86 NGNKPDN---GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAA 161 (286)
T ss_dssp TCCCCSS---SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTT
T ss_pred cCCCCCC---CceEEEEEEE-ecCccccccHHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhccccccCCcceEEecch
Confidence 9998853 4899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhc---------------cccHHHHHHHcCCccCCCc
Q 023963 165 YDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSL---------------HGGLNKLAELLEVERIGIC 229 (274)
Q Consensus 165 yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l---------------~~~L~~la~~L~v~r~g~~ 229 (274)
||||||+|+|+|+|||+++++|+++++.+||++||||||++.+.++ +.||++||+.|+++|+|++
T Consensus 162 yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP~iyDtK~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ia~~l~v~~~g~~ 241 (286)
T d1uoca_ 162 YDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIF 241 (286)
T ss_dssp HHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHCCcceeHHHHHHHhhccccccccchhhhhccccCCHHHHHHhcCCCccCCC
Confidence 9999999999999999999999999999999999999999988644 3499999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhhc----CC-CccccccEEeecCCC
Q 023963 230 HQAGSDSLLTCCTFMKMKDNFF----KG-SPEKYAGVLYGLGVE 268 (274)
Q Consensus 230 HqAGsDS~lT~~~F~~l~~~~~----~~-~~~~~~~~i~Gl~~~ 268 (274)
||||||||||++||++|++.+. ++ +.+++.|+|||||.+
T Consensus 242 HeAG~DSllT~~~F~~l~~~~~~~f~~~~~~~~~~g~l~Gl~~~ 285 (286)
T d1uoca_ 242 TTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 285 (286)
T ss_dssp GSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhccCCccHHHhCCEEeCCCCC
Confidence 9999999999999999998654 22 278999999999975
No 2
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.8e-87 Score=604.61 Aligned_cols=250 Identities=56% Similarity=1.029 Sum_probs=242.9
Q ss_pred eEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCC
Q 023963 11 HIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPK 90 (274)
Q Consensus 11 ~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~ 90 (274)
+|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++|+||+++|+||+.+++||+|||+++++|+.|.
T Consensus 1 ~i~eV~~~Nf~e~~~~i~~~i~~~~fVAiD~EF~G~~~~~~~~~~~t~~~~Y~~lr~nv~~~~iiQ~Glt~~~~~g~~~~ 80 (252)
T d2d5ra1 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhcCCEEEEeeeccCcccCCCCccCCCHHHHHHHHHHHHhhcceeEEEEEeecccCCCCC
Confidence 59999999999999999999999999999999999999998888899999999999999999999999999999999886
Q ss_pred CCCCCeeeEEEeeeecCCCCCccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHH
Q 023963 91 CGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYL 170 (274)
Q Consensus 91 ~g~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl 170 (274)
++++|||||+ |+.++|+|+++||+||++|||||||++++||++..|++++++||++++++++||+|||+||||||
T Consensus 81 ----~~~~w~FNf~-~~~~~~~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~~~l~~s~~~~~~~~~wv~f~g~yD~~yl 155 (252)
T d2d5ra1 81 ----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 155 (252)
T ss_dssp ----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHH
T ss_pred ----CceeEEEEEE-eCCcccccCHHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhhhhhhcCCCcEEEecchhHHHHH
Confidence 4899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 171 LKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 171 ~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
+|+|+|+|||+++++|+++++.+||++||||||++.|.++++||++||+.|+++|+|++||||+|||||++||++|++++
T Consensus 156 ~k~l~~~~LP~~~~eF~~~v~~~FP~vyDtK~l~~~~~~~~~~L~~la~~L~v~~~g~~H~AG~DsllT~~~F~~l~~~~ 235 (252)
T d2d5ra1 156 IKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHCchHhhHHHHHhhccCCCchHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ccccccEEeec
Q 023963 251 FKGS--PEKYAGVLYGL 265 (274)
Q Consensus 251 ~~~~--~~~~~~~i~Gl 265 (274)
+++. .++++|+||||
T Consensus 236 ~~~~~~~~~~~g~i~Gl 252 (252)
T d2d5ra1 236 FEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp SCSSCCHHHHTTBCTTC
T ss_pred hcCCCcHHHhCCcccCC
Confidence 9764 57899999997
No 3
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=98.75 E-value=7.2e-08 Score=76.98 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=107.0
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCccc
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYA 114 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~ 114 (274)
.+|.+|||-||+..... .. +.=.|||+|...++ ++.. ..-+|+.+ ... ....+
T Consensus 1 r~vv~D~ETTGl~~~~~--~~--------------~~d~IIeIg~v~~~-~~~~--------~~~~~~~~-v~P-~~~i~ 53 (174)
T d2guia1 1 RQIVLDTETTGMNQIGA--HY--------------EGHKIIEIGAVEVV-NRRL--------TGNNFHVY-LKP-DRLVD 53 (174)
T ss_dssp EEEEEEEEESCCCSSSS--TT--------------TTCCEEEEEEEEEE-TTEE--------CSCCEEEE-CCC-SSCCC
T ss_pred CEEEEEeeCCCCCcccc--cC--------------CCCEEEEEEEEEEE-CCEE--------eeeEEEEE-ecc-Cccch
Confidence 37999999999853321 10 01149999988775 3321 12346666 433 23344
Q ss_pred hhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhC
Q 023963 115 YDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYF 194 (274)
Q Consensus 115 ~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~F 194 (274)
+.+. +-+|++-......+ ++....+.+.. .+ + +-.+|.++..+|+.++...+.....+..... ..
T Consensus 54 ~~~~---~i~gIt~e~~~~~~-~~~~~~~~~~~--~~-~-~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~ 118 (174)
T d2guia1 54 PEAF---GVHGIADEFLLDKP-TFAEVADEFMD--YI-R-GAELVIHNAAFDIGFMDYEFSLLKRDIPKTN-------TF 118 (174)
T ss_dssp HHHH---HHHCCCHHHHTTSC-CHHHHHHHHHH--HH-T-TSEEEETTHHHHHHHHHHHHHHTCSCCCCGG-------GT
T ss_pred hhhh---hccccchhhhhcch-hHHHHHHHHHH--hc-C-CCeEEEeecchhhHHHHHHHHHhCCCCCCcc-------cc
Confidence 4444 45788876665554 44333333221 11 1 2367888889999998776643222211111 12
Q ss_pred CCcccHHHHHHHhh-hccccHHHHHHHcCCccCC-CccccchhhHHHHHHHHHHH
Q 023963 195 PTLYDIKHLMKFCN-SLHGGLNKLAELLEVERIG-ICHQAGSDSLLTCCTFMKMK 247 (274)
Q Consensus 195 P~iyD~K~la~~~~-~l~~~L~~la~~L~v~r~g-~~HqAGsDS~lT~~~F~~l~ 247 (274)
....|+..+++... ..+.+|..+++.++++..+ .+|.|-+|+..|+.||.+|.
T Consensus 119 ~~~~d~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~ta~v~~~l~ 173 (174)
T d2guia1 119 CKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT 173 (174)
T ss_dssp SEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHcCCCCCCHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 24679988887653 3456899999999998754 58999999999999999984
No 4
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.65 E-value=7.6e-07 Score=72.89 Aligned_cols=174 Identities=12% Similarity=-0.011 Sum_probs=109.8
Q ss_pred eeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCccch
Q 023963 36 YIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAY 115 (274)
Q Consensus 36 fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~ 115 (274)
||.+|+|.||....+. .. .-.|||+|...++.++. ...-+||.+.-+......++
T Consensus 8 ~iv~D~EtT~~~~~~~-~~----------------~~~Iieigav~~d~~~~--------~~~~~f~~~v~P~~~~~i~~ 62 (200)
T d1w0ha_ 8 ICIIDFEATCEEGNPP-EF----------------VHEIIEFPVVLLNTHTL--------EIEDTFQQYVRPEINTQLSD 62 (200)
T ss_dssp EEECCCEECCCTTCCT-TS----------------CCCEEEEEEEEEETTTC--------SEEEEEEEEBCCSSSCSCCH
T ss_pred EEEEEEecCCCCCCCC-CC----------------CCcEEEEEEEEEECCCC--------eEEEEEEEEEecCccccCCH
Confidence 8999999997643321 01 11499999999986532 23557887733333335555
Q ss_pred hhHHHHHHcCCCccchhhCCCChHHHH----HHHHHcCcccCCCceeEEeecchhHHHHHHHh--cCCCCCCCHHHHHHH
Q 023963 116 DSIKLLSRSGIDFKKNKEKGVDAMRFS----ELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLL--TCKDLPETQACFFDL 189 (274)
Q Consensus 116 ~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l--~~~~LP~~~~~F~~~ 189 (274)
.+.+ -+|+.-..+ .+|.+..... +.+....++......|+......|.-+|-..+ .+.++|.-
T Consensus 63 ~~~~---itgit~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~~~~~~~~~~p~~------- 131 (200)
T d1w0ha_ 63 FCIS---LTGITQDQV-DRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPF------- 131 (200)
T ss_dssp HHHH---HHCCCHHHH-HTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGG-------
T ss_pred HHHH---HHCCCHHHh-hhhhhhHhHHHHHHHHhcCCcEEeeeeeeeccchhhhHHHHHHHHHHhccCCCccc-------
Confidence 5544 488887766 5688876543 33334444433343444434344444553322 24455522
Q ss_pred HHhhCCCcccHHHHHHHhhhc---cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHh
Q 023963 190 IKMYFPTLYDIKHLMKFCNSL---HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 190 l~~~FP~iyD~K~la~~~~~l---~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
+...+|++.+.....+. .-+|+++++.+|++-.|.+|-|=.|+..|+++|.+|.+.
T Consensus 132 ----~~~~~d~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~aH~Al~Da~~~a~v~~~ll~~ 190 (200)
T d1w0ha_ 132 ----AKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQD 190 (200)
T ss_dssp ----GSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----ccceeeHHhHhhhhccccccchHHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 22467887666554322 347999999999998888999999999999999998664
No 5
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.48 E-value=8.1e-07 Score=71.93 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=105.6
Q ss_pred eeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCccch
Q 023963 36 YIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAY 115 (274)
Q Consensus 36 fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~~~ 115 (274)
+|.+|+|-||+.... + .|||+|....+.+.+.. .....++..+..+.......+
T Consensus 13 ~Vv~D~ETTGl~~~~-----~----------------~IIeigav~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 66 (202)
T d2f96a1 13 PVVVDVETGGFNSAT-----D----------------ALLEIAATTVGMDEKGF-----LFPEHTYFFRIEPFEGANIEP 66 (202)
T ss_dssp EEEEEEEESSSCTTT-----B----------------CEEEEEEEEEEECTTSC-----EEEEEEEEEEBCCCTTCBCCH
T ss_pred cEEEEEeCCCCCCCC-----C----------------ceEEEEEEEEEecccCc-----eecceeEEEeeccCccccCCH
Confidence 589999999984321 0 49999999887543322 133444555523333334566
Q ss_pred hhHHHHHHcCCCccchhhCCCChHHHHHHHHH-c--Cccc-CCCceeEEeec-chhHHHHHHHhcCCCCCCCHHHHHHHH
Q 023963 116 DSIKLLSRSGIDFKKNKEKGVDAMRFSELLMS-S--GIVL-NDSVHWVTFHS-GYDFGYLLKLLTCKDLPETQACFFDLI 190 (274)
Q Consensus 116 ~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~-s--gLv~-~~~v~Wvtfhg-~yD~~yl~k~l~~~~LP~~~~~F~~~l 190 (274)
++++. +|++-......++......+.... . .+.. .....++.+|. ..|..++...+. ..
T Consensus 67 ~~~~i---~git~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-------------~~ 130 (202)
T d2f96a1 67 AALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVA-------------RT 130 (202)
T ss_dssp HHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHH-------------HH
T ss_pred HHHHh---cCCcHHHHHhcccchhHHHHHHHHHHHHHHHhhcccccceeeeehhhhHHHHHHHHH-------------Hh
Confidence 66555 899999999999987654332221 1 0111 12234555554 456666544432 11
Q ss_pred HhhCC-----CcccHHHHHHHhhhccccHHHHHHHcCCccCC-CccccchhhHHHHHHHHHHHHhhc
Q 023963 191 KMYFP-----TLYDIKHLMKFCNSLHGGLNKLAELLEVERIG-ICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 191 ~~~FP-----~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g-~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
....+ .+++...++... .-..+|..+++.+|++-.+ .+|.|-+|+..|+++|.+|.+++-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~gi~~~~~~aH~Al~Da~~ta~i~~~l~~~~~ 196 (202)
T d2f96a1 131 GIKRNPFHPFSSFDTATLAGLA-YGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 196 (202)
T ss_dssp TCCCCCEEEEEEEEHHHHHHHH-HSCCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCcccchhhhhhhhhcc-cCCcCHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11122 133333333322 2346899999999998766 489999999999999999988764
No 6
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.45 E-value=2.1e-06 Score=72.16 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=107.7
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCC----C--CCCeeeEEEeeeecCC
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKC----G--TDKYCLWQFNFREFSP 108 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~----g--~~~~~~wqFNF~~F~~ 108 (274)
.||.+|+|-+|+.... =.|||+|+..++.++..... + ......-+|+.+ ++.
T Consensus 9 ~~v~~D~ETTGl~~~~---------------------~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-v~P 66 (228)
T d1y97a1 9 TFVFLDLEATGLPSVE---------------------PEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLC-MCP 66 (228)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEE-CCC
T ss_pred EEEEEEEecCCcCCCC---------------------CCeEEEEEEEEECCccccccccccccccccceecceeeE-ECC
Confidence 4999999999985321 13999999998754321100 0 002345678887 654
Q ss_pred CCCccchhhHHHHHHcCCCccchhhCCCCh--HHHHHHHHHcCcccCCCceeEEeec-chhHHHHHHHhc--CCCCCCCH
Q 023963 109 DEDVYAYDSIKLLSRSGIDFKKNKEKGVDA--MRFSELLMSSGIVLNDSVHWVTFHS-GYDFGYLLKLLT--CKDLPETQ 183 (274)
Q Consensus 109 ~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~--~~f~e~l~~sgLv~~~~v~Wvtfhg-~yD~~yl~k~l~--~~~LP~~~ 183 (274)
.. ..++.+.+. +||.=+.+...+.+. ....+.+..-.........+|++|+ .+|+.+|-+.+. |-.+|...
T Consensus 67 ~~-~i~~~~~~i---tGIt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~ 142 (228)
T d1y97a1 67 ER-PFTAKASEI---TGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDT 142 (228)
T ss_dssp SS-CCCHHHHHH---HCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTC
T ss_pred CC-CCCHHHHHh---cCCCHHHHHhccCcchHHHHHHHHHHHhhhccCCceEEeechHHHhHHHHHHHHHHcCCCCCCCc
Confidence 33 455666554 666655555554432 1122222221111234568899997 699999876653 33444221
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhc-----------cccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 184 ACFFDLIKMYFPTLYDIKHLMKFCNSL-----------HGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 184 ~~F~~~l~~~FP~iyD~K~la~~~~~l-----------~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
..+||-.+++..... .-+|+++++.++....+.+|.|.+|++.|+++|.+|...+
T Consensus 143 ------------~~iDtl~~~r~l~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~aH~Al~Da~at~~l~~~~~~~l 208 (228)
T d1y97a1 143 ------------VCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAEL 208 (228)
T ss_dssp ------------EEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHH
T ss_pred ------------chhhHHHHHHHhhhhcccccccCcCCCcCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 246887777654310 1269999998866667789999999999999999987654
No 7
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.19 E-value=7.9e-06 Score=68.48 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=111.9
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCC---------CCCCCeeeEEEeeee
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPK---------CGTDKYCLWQFNFRE 105 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~---------~g~~~~~~wqFNF~~ 105 (274)
+||.+|||-||+.... + .|||+|+-.++.++.... ........-+|++.
T Consensus 5 ~~v~~D~ETTGl~~~~-----~----------------~Iieia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 62 (226)
T d3b6oa1 5 TLIFLDLEATGLPSSR-----P----------------EVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 62 (226)
T ss_dssp EEEEEEEEESSCGGGC-----C----------------CEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEE-
T ss_pred eEEEEEEECCCCCCCC-----C----------------ceEEEEEEEEeCCcccccccccccccccccccceeceeeee-
Confidence 5899999999984221 1 499999888864321100 00012345677877
Q ss_pred cCCCCCccchhhHHHHHHcCCCccchhhCCCCh--HHHHHHHHHc-CcccCCCceeEEeec-chhHHHHHHHhcCCCCCC
Q 023963 106 FSPDEDVYAYDSIKLLSRSGIDFKKNKEKGVDA--MRFSELLMSS-GIVLNDSVHWVTFHS-GYDFGYLLKLLTCKDLPE 181 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~--~~f~e~l~~s-gLv~~~~v~Wvtfhg-~yD~~yl~k~l~~~~LP~ 181 (274)
.+... ...+.+.+. +||.=+.+...|.+. ..+++.+..- +.. .....+|++++ .+|+.+|-+.+....++.
T Consensus 63 v~P~~-~I~~~~~~i---~GIt~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~lVahN~~~FD~~~l~~~~~r~~~~~ 137 (226)
T d3b6oa1 63 IAPGK-ACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ-PQPCCLVAHNGDRYDFPLLQTELARLSTPS 137 (226)
T ss_dssp CCCSS-CCCHHHHHH---HCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS-CSSEEEEETTTTTTHHHHHHHHHHTSSSCC
T ss_pred ECCCC-CCCHHHHHh---cCCCHHHHHhcccchhHHHHHHHHHHHHHhc-cCCceEEEechhHHHHHHHHHHHHHcCCCC
Confidence 55533 356666544 999988888888763 2333333210 111 23456788887 799999988776322221
Q ss_pred CHHHHHHHHHhhCCC-cccHHHHHHHhh-hc---------cccHHHHHHHc-CCccCCCccccchhhHHHHHHHHHHHHh
Q 023963 182 TQACFFDLIKMYFPT-LYDIKHLMKFCN-SL---------HGGLNKLAELL-EVERIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 182 ~~~~F~~~l~~~FP~-iyD~K~la~~~~-~l---------~~~L~~la~~L-~v~r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
.. .+. ..||-.+++..- .. .-+|+.|++.+ |++ .+.+|.|-+|+..|+++|.++.+.
T Consensus 138 ~~----------~~~~~iDtl~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~~g~~-~~~aH~Al~D~~~~~~l~~~~~~~ 206 (226)
T d3b6oa1 138 PL----------DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQA-PTDSHTAEGDVLTLLSICQWKPQA 206 (226)
T ss_dssp TT----------TTCEEEEHHHHHHHHHTC---------CCCSHHHHHHHHHSSC-CSSTTSHHHHHHHHHHHHTSSHHH
T ss_pred CC----------CcchHHHHHHHHHHhcccccccccccccCcchHHHHHHHcCCC-CCCCcChHHHHHHHHHHHHHHHHH
Confidence 10 111 468877776542 11 12699998876 554 568999999999999999988776
Q ss_pred hc
Q 023963 250 FF 251 (274)
Q Consensus 250 ~~ 251 (274)
+.
T Consensus 207 l~ 208 (226)
T d3b6oa1 207 LL 208 (226)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 8
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=98.15 E-value=6e-06 Score=76.56 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=111.6
Q ss_pred CCeeEEeecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEe-eeecCCCCCc
Q 023963 34 YPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFN-FREFSPDEDV 112 (274)
Q Consensus 34 ~~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~~~g~~p~~g~~~~~~wqFN-F~~F~~~~d~ 112 (274)
..||.+|+|=||+...- =.|||+|.-.++.+++.-. +|+ ++.-....-.
T Consensus 2 ~~fv~~D~ETtG~~~~~---------------------d~ii~~~ai~~d~~~~~~~---------~~~~~~~~~~~~~~ 51 (467)
T d2qxfa1 2 STFLFHDYETFGTHPAL---------------------DRPAQFAAIRTDSEFNVIG---------EPEVFYCKPADDYL 51 (467)
T ss_dssp CEEEEEEEEESSSCTTT---------------------SCEEEEEEEEECTTSCBCS---------CCEEEEBCCCTTCC
T ss_pred CeEEEEEEECCCcCCCC---------------------CcEEEEEEEEECCCCcEEe---------EEEEEeecCCCCCC
Confidence 57999999999984321 1499999999988876432 122 2211122223
Q ss_pred cchhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeec-chhHHHHHHHhcCCCCCCCHHHHHHHHH
Q 023963 113 YAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHS-GYDFGYLLKLLTCKDLPETQACFFDLIK 191 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg-~yD~~yl~k~l~~~~LP~~~~~F~~~l~ 191 (274)
-++.| +.-+|+.=+.+...|++...+++.+.. ++......+|++|+ .+|..+|-+.+...-+|.-...+...
T Consensus 52 p~~~a---~~v~gi~~~~~~~~~~~~~e~~~~i~~--~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~-- 124 (467)
T d2qxfa1 52 PQPGA---VLITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD-- 124 (467)
T ss_dssp CCHHH---HHHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGG--
T ss_pred CCHHH---HHHhCcCHHHHHcCCCCHHHHHHHHHH--HHhcCCCcEEEEecchhhHHHHHHHHHHhcccchhhccccc--
Confidence 34555 344999988999999987776655433 12123457899998 79999998888644444322111000
Q ss_pred hhCCCcccHHHHHHHhh--------------h-ccccHHHHHHHcCCccCCCccccchhhHHHHHHHHHHHHhh
Q 023963 192 MYFPTLYDIKHLMKFCN--------------S-LHGGLNKLAELLEVERIGICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 192 ~~FP~iyD~K~la~~~~--------------~-l~~~L~~la~~L~v~r~g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
-...|+--+++.+. + -.-.|+.+|+..|++. +.+|.|=+|+..|+.++.+|++.+
T Consensus 125 ---~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~~la~~~gi~~-~~aH~Al~D~~~t~~l~~~i~~~~ 194 (467)
T d2qxfa1 125 ---NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVKTRQ 194 (467)
T ss_dssp ---CEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHHHHS
T ss_pred ---ccchhhhhhhhhccccCCchhhhhhccccchhhhHHHHHHHhCCCc-cccccccCCHHHHHHHHHHhhhhh
Confidence 01234444443322 1 1236999999999975 468999999999999999998874
No 9
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.94 E-value=8.3e-06 Score=65.01 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=88.4
Q ss_pred CeeEEeecccccccccCCCCCCChHHHHHHHHhccccccee-eeeeeeecCCCCCCCCCCCCeeeEEEeeeecCCCCCcc
Q 023963 35 PYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLI-QLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVY 113 (274)
Q Consensus 35 ~fIAiDtEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~ii-QlGit~~~~~g~~p~~g~~~~~~wqFNF~~F~~~~d~~ 113 (274)
++||||+|.+|+.... =.+| +++| .+.+|+.. |+-+ .... ...
T Consensus 1 ~~v~iD~EttGl~~~~---------------------~~ii~~~~i--v~~~g~~i-----------~~~~-v~p~-~~i 44 (173)
T d1wlja_ 1 EVVAMDCEMVGLGPHR---------------------ESGLARCSL--VNVHGAVL-----------YDKF-IRPE-GEI 44 (173)
T ss_dssp CEEEEEEEEEEETTTT---------------------EEEEEEEEE--ECTTCCEE-----------EEEE-EECS-SCE
T ss_pred CEEEEEEEcCCCCCCC---------------------CcEEEEEEE--EEecCeEE-----------EEEe-eecc-ccc
Confidence 4899999999995321 1144 4444 67777632 2222 2221 123
Q ss_pred chhhHHHHHHcCCCccchhhCCCChHHHHHHHHHcCcccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 023963 114 AYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMY 193 (274)
Q Consensus 114 ~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~sgLv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~ 193 (274)
.+.+.+. +|+.=.. ...+.+.....+.+.. +. .+-.+|.++..+|+.+|-..+ |.. ..
T Consensus 45 ~~~~~~i---~GIt~e~-~~~~~~~~~~~~~~~~--~~--~~~~lv~hn~~fD~~~L~~~~-----~~~---------~~ 102 (173)
T d1wlja_ 45 TDYRTRV---SGVTPQH-MVGATPFAVARLEILQ--LL--KGKLVVGHDLKHDFQALKEDM-----SGY---------TI 102 (173)
T ss_dssp EECCHHH---HCCCHHH-HTTCEEHHHHHHHHHH--HH--TTSEEEESSHHHHHHHTTCCC-----TTC---------EE
T ss_pred CcceeEE---ecCcchh-hhcCCcHHHHHHHHHh--hc--ccceEEeechHhHHHHHHHhh-----ccC---------cc
Confidence 3333333 5665333 3344444444333332 11 233788888899988764332 211 01
Q ss_pred CCCcccHHHHHHHhhh-c-cccHHHHHHHc-CCc--cCCCccccchhhHHHHHHHHHHHHh
Q 023963 194 FPTLYDIKHLMKFCNS-L-HGGLNKLAELL-EVE--RIGICHQAGSDSLLTCCTFMKMKDN 249 (274)
Q Consensus 194 FP~iyD~K~la~~~~~-l-~~~L~~la~~L-~v~--r~g~~HqAGsDS~lT~~~F~~l~~~ 249 (274)
.+...|+..+++.... . +.+|..|++.+ +.. ..+.+|.|-+|+..|+.+|..+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~Da~at~~l~~~~~~~ 163 (173)
T d1wlja_ 103 YDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRI 163 (173)
T ss_dssp EEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 1235577777665432 2 35899998874 443 3467899999999999999776654
No 10
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=97.24 E-value=0.0013 Score=53.84 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=60.7
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhh-ccccHHHHHHH-cCCccC----
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNS-LHGGLNKLAEL-LEVERI---- 226 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~-l~~~L~~la~~-L~v~r~---- 226 (274)
++++.+|.++..+|+.+|.+.. | ...++++||..++..+.. -..||..+++. ||++-.
T Consensus 72 ~~~i~Kv~hn~~~D~~~L~~~~-g---------------~~~~~~~Dt~~~~~~l~~~~~~~L~~l~~~~lg~~ldK~~q 135 (193)
T d1yt3a3 72 DPSITKFLHAGSEDLEVFLNVF-G---------------ELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSES 135 (193)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-S---------------SCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTT
T ss_pred CCCceEEEecchhhhhhhhhhc-C---------------ccccccchhhHHHhhhccccccchhhHHhhhccccccchhh
Confidence 6788999999999999887654 2 223578899988887753 34689988876 565421
Q ss_pred -----------CCccccchhhHHHHHHHHHHHHhh
Q 023963 227 -----------GICHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 227 -----------g~~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
...+=|..|++++..+|.+|++..
T Consensus 136 ~sdW~~rPL~~~qi~YAA~Dv~~ll~L~~~L~~~l 170 (193)
T d1yt3a3 136 RTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (193)
T ss_dssp TSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 112458999999999999988764
No 11
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.49 E-value=0.0062 Score=53.32 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=62.8
Q ss_pred cCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHH-cCCccC----
Q 023963 152 LNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAEL-LEVERI---- 226 (274)
Q Consensus 152 ~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~-L~v~r~---- 226 (274)
.++++..|.++..+|+..|.+-+- .+..+++||...+..+..-+.||..|++. ||++-.
T Consensus 154 ~d~~I~KV~H~~~~Di~~L~~~~g----------------~~~~n~fDT~~aa~~l~~~~~sL~~L~~~yl~~~ldK~~q 217 (292)
T d2hbka2 154 TNPSIVKVFHGAFMDIIWLQRDLG----------------LYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQ 217 (292)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHHC----------------CCCSSEEEHHHHHHHHTCSCCSHHHHHHHHHCCCCCCTTT
T ss_pred hccCeEEEeechHhhhhhhhhccc----------------ccccchHHHHHHHHHhCccccchHHHHHHhhhhccccccc
Confidence 367888888888899988877552 23357999999988886557799999876 555320
Q ss_pred -----------CCccccchhhHHHHHHHHHHHHhhc
Q 023963 227 -----------GICHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 227 -----------g~~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
...+=|..|+..+..+|-+|+....
T Consensus 218 ~SdW~~RPLs~~qi~YAa~Da~~Ll~ly~~L~~~L~ 253 (292)
T d2hbka2 218 LADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 253 (292)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234589999999999999987764
No 12
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=95.57 E-value=0.085 Score=41.24 Aligned_cols=85 Identities=22% Similarity=0.180 Sum_probs=53.9
Q ss_pred cccCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhh--ccccHHHHHHH-cCCccC
Q 023963 150 IVLNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNS--LHGGLNKLAEL-LEVERI 226 (274)
Q Consensus 150 Lv~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~--l~~~L~~la~~-L~v~r~ 226 (274)
++.++.+.+|.++..+|+.+|.+. |..+| +.++||..++..+.. .+.+|..+++. ++++..
T Consensus 85 ~le~~~i~ki~hn~~~d~~~l~~~--~~~~~--------------~~~~Dt~~a~~l~~~~~~~~~l~~~~~~~l~~~~~ 148 (195)
T d1kfsa1 85 LLEDEKALKVGQNLKYDRGILANY--GIELR--------------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 148 (195)
T ss_dssp HHTCTTSCEEESSHHHHHHHHHTT--TCCCC--------------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSSCCCC
T ss_pred HHhcccceeeechHHHHHHHHHHH--hcccc--------------CccHHHHHHHHHhcccccccchHHHHHHHhhcccc
Confidence 344677788888888888887764 32222 346788777776642 23456555543 444331
Q ss_pred C--------C-------------ccccchhhHHHHHHHHHHHHhh
Q 023963 227 G--------I-------------CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 227 g--------~-------------~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
. . ..=|..|+..|.+.+-+|+...
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~~~~~~YAa~D~~~t~~L~~~l~~~L 193 (195)
T d1kfsa1 149 TFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL 193 (195)
T ss_dssp CHHHHHCSGGGCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhhcccccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 1238889999999999988763
No 13
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}
Probab=84.95 E-value=1.3 Score=33.17 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=43.6
Q ss_pred eEEee-cchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCccCCCccccchhh
Q 023963 158 WVTFH-SGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGICHQAGSDS 236 (274)
Q Consensus 158 Wvtfh-g~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDS 236 (274)
.+..| ..+|..++.+.+.. +. ..+-.+..|+.-+...+..... +...+++. ..+|.|=+|+
T Consensus 102 ~~~~~~~~FD~~~l~~~~~~---------~~---~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~~~-~~aH~Al~Dv 163 (180)
T d2igia1 102 PICGNSIGQDRRFLFKYMPE---------LE---AYFHYRYLDVSTLKELARRWKP-----EILDGFTK-QGTHQAMDDI 163 (180)
T ss_dssp CEEESSHHHHHHHHHHHCHH---------HH---HHSCSCEEETHHHHHHHHHHCG-----GGGGGSCC-CCCCCHHHHH
T ss_pred EEEechhcchhHHHHHHhhh---------hc---ccCCCcEEeehhhHHHHhhcCh-----HHhcCCCC-CCCcccHHHH
Confidence 34444 47899998876531 11 1112345577666655432211 11224433 4589999999
Q ss_pred HHHHHHHHHHHHhhc
Q 023963 237 LLTCCTFMKMKDNFF 251 (274)
Q Consensus 237 ~lT~~~F~~l~~~~~ 251 (274)
.-|.......|+.++
T Consensus 164 ~~ti~~l~~yr~~~~ 178 (180)
T d2igia1 164 RESVAELAYYREHFI 178 (180)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHhh
Confidence 999877766666553
No 14
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.58 E-value=11 Score=29.81 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=57.1
Q ss_pred cCCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhh---hc-cccHHHHHHH-cCCccC
Q 023963 152 LNDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCN---SL-HGGLNKLAEL-LEVERI 226 (274)
Q Consensus 152 ~~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~---~l-~~~L~~la~~-L~v~r~ 226 (274)
.+++++.|.+.-.+|+..|.+.. | ....+++|+..+|.... .. ..||..|++. ||..-.
T Consensus 105 ~~~~i~kVG~~i~~D~~~L~~~~-g---------------i~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~~l~ 168 (206)
T d1vk0a_ 105 ASKFVTFVGVQIEEDLDLLRENH-G---------------LVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLG 168 (206)
T ss_dssp TCSSSEEEESSCHHHHHHHHHHH-C---------------CCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCH
T ss_pred cCCCceEEEEeEHHHHHHHHHhc-C---------------CcccceEEchHHHHHhhcCCccccchHHHHHHHHhcccCC
Confidence 37889999999999999887754 2 11346888887776653 22 3589998876 454310
Q ss_pred ---------------CCccccchhhHHHHHHHHHHHH
Q 023963 227 ---------------GICHQAGSDSLLTCCTFMKMKD 248 (274)
Q Consensus 227 ---------------g~~HqAGsDS~lT~~~F~~l~~ 248 (274)
.+.+-|-.||+++..+|-+|.+
T Consensus 169 K~~~~~SnW~~pLs~~Qi~YAA~DA~~~~~i~~~L~~ 205 (206)
T d1vk0a_ 169 QLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeecCCCCcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1234588899999999999875
No 15
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=41.85 E-value=13 Score=24.49 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHcCCccCCC---ccccchhhHHHHHHHHHHHHhh
Q 023963 217 LAELLEVERIGI---CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 217 la~~L~v~r~g~---~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
+++.||++.++. ..+.|.||+.+.+.-.+|++.+
T Consensus 16 ~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~ 52 (76)
T d2gdwa1 16 WERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREY 52 (76)
T ss_dssp HHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHH
Confidence 456788877543 5689999999999988998875
No 16
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=38.57 E-value=12 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=30.2
Q ss_pred chhhHHHHHHcCCCccch--hhCCCChHHHHHHHHHcC
Q 023963 114 AYDSIKLLSRSGIDFKKN--KEKGVDAMRFSELLMSSG 149 (274)
Q Consensus 114 ~~~Si~fL~~~G~DF~k~--~~~GI~~~~f~e~l~~sg 149 (274)
+-.++++|.++|++|+-. .+++++...+.+++...|
T Consensus 13 srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll~~lg 50 (138)
T d1j9ba_ 13 SRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMG 50 (138)
T ss_dssp HHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHHHHHcc
Confidence 466899999999988765 488899999988887766
No 17
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.94 E-value=12 Score=26.50 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhh--hccccHHHHHHHcCCccC
Q 023963 183 QACFFDLIKMYFPTLYDIKHLMKFCN--SLHGGLNKLAELLEVERI 226 (274)
Q Consensus 183 ~~~F~~~l~~~FP~iyD~K~la~~~~--~l~~~L~~la~~L~v~r~ 226 (274)
=.-|.++++.+.|...|.+.+...-. ++...++...+.|||++.
T Consensus 36 G~a~caLih~~~P~~i~~~~l~~~~~~~~~~~af~~a~~~lgip~l 81 (108)
T d1bhda_ 36 GLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKL 81 (108)
T ss_dssp SHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred chHHHHHHHHHCccccChhhcCcCCHHHHHHHHHHHHHHhCCCCCC
Confidence 36788999999999889888865432 234455555577999983
No 18
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=35.33 E-value=19 Score=22.85 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhhccccHHHHHHHcCCcc
Q 023963 176 CKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVER 225 (274)
Q Consensus 176 ~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~la~~L~v~r 225 (274)
+.+|++-.++|.. .+|.+.+... |+..+.|+.||+.|
T Consensus 11 ~~~L~e~~~~~Er------------~~I~~aL~~~-gn~~~aA~~Lgisr 47 (61)
T d1g2ha_ 11 NKTLDEIIGFYEA------------QVLKLFYAEY-PSTRKLAQRLGVSH 47 (61)
T ss_dssp SSCSSSSCSHHHH------------HHHHHHHHHS-CSHHHHHHHTTSCT
T ss_pred CCCHHHHHHHHHH------------HHHHHHHHHC-CCHHHHHHHHCCCH
Confidence 4677777777665 4565556543 78899999999987
No 19
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=33.90 E-value=16 Score=25.78 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=31.4
Q ss_pred cchhhHHHHHHcCCCccc--hhhCCCChHHHHHHHHHcC
Q 023963 113 YAYDSIKLLSRSGIDFKK--NKEKGVDAMRFSELLMSSG 149 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k--~~~~GI~~~~f~e~l~~sg 149 (274)
-+..++++|.++|++|.- ..+++++...+.+.+...|
T Consensus 12 ~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~~~~ 50 (114)
T d1z3ea1 12 SCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTE 50 (114)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHHHHhc
Confidence 356799999999999887 6779999999999987765
No 20
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}
Probab=33.19 E-value=14 Score=23.77 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred hhhCCCChHHHHHHHHHcCcccCCC
Q 023963 131 NKEKGVDAMRFSELLMSSGIVLNDS 155 (274)
Q Consensus 131 ~~~~GI~~~~f~e~l~~sgLv~~~~ 155 (274)
.+.+|++|..|-..|..+++.+|+.
T Consensus 9 ~r~~g~~YS~fi~~L~k~~I~LnRK 33 (60)
T d1gyza_ 9 VRAYGLNYSTFINGLKKAGIELDRK 33 (60)
T ss_dssp HTTTTCCSHHHHHHHHHHTCCCCSS
T ss_pred HHHhCCCHHHHHHHHHHcCCCCcHH
Confidence 4678999999999999999988876
No 21
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=31.28 E-value=21 Score=26.01 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=27.9
Q ss_pred CccchhhHHHHHHcCCCccchhhCCCChHHHHHHHHH
Q 023963 111 DVYAYDSIKLLSRSGIDFKKNKEKGVDAMRFSELLMS 147 (274)
Q Consensus 111 d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~ 147 (274)
+...+++++.|+++|+..-.......+...+.+.+..
T Consensus 11 d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~ 47 (132)
T d1sc6a2 11 EGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRD 47 (132)
T ss_dssp SCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcC
Confidence 4468899999999998755556667888877777543
No 22
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.77 E-value=21 Score=25.20 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhh--hccccHHHHH-HHcCCccC
Q 023963 184 ACFFDLIKMYFPTLYDIKHLMKFCN--SLHGGLNKLA-ELLEVERI 226 (274)
Q Consensus 184 ~~F~~~l~~~FP~iyD~K~la~~~~--~l~~~L~~la-~~L~v~r~ 226 (274)
.-|.++++.+.|...|-+.+...-. ++...++ +| +.||++++
T Consensus 38 ~afcaLih~~~P~~id~~~l~~~~~~~~~~~a~~-~Ae~~lgip~l 82 (110)
T d1sh5a2 38 RLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFS-VAERDLGVTRL 82 (110)
T ss_dssp HHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHH-HHHHHHCCCCC
T ss_pred HHHHHHHHHHCcccCChhhcCccCHHHHHHHHHH-HHHHcCCCCCC
Confidence 5688999999999889877754321 2233343 55 66999983
No 23
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=28.18 E-value=20 Score=26.41 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHhhC-CCcccHHHHHHHhhhccccHHHHHHHcCC
Q 023963 177 KDLPETQACFFDLIKMYF-PTLYDIKHLMKFCNSLHGGLNKLAELLEV 223 (274)
Q Consensus 177 ~~LP~~~~~F~~~l~~~F-P~iyD~K~la~~~~~l~~~L~~la~~L~v 223 (274)
-.||+....|.++++.+- +.+-|.|.+.+.|..+-.||++.++.+++
T Consensus 71 l~lp~~p~g~d~l~~~vm~G~L~~~~~i~~~CE~~w~Gl~~w~a~h~y 118 (128)
T d1knya1 71 VKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQEWTERHGY 118 (128)
T ss_dssp TTSSSCCTTHHHHHHHHHHTBCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCCCCChhHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHcCe
Confidence 468888888888877666 67999999999998888899999998875
No 24
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=27.66 E-value=72 Score=23.58 Aligned_cols=82 Identities=10% Similarity=-0.033 Sum_probs=54.4
Q ss_pred CCCceeEEeecchhHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCcccHHHHHHHhhh-c-cccHHHHHHHc-CCcc----
Q 023963 153 NDSVHWVTFHSGYDFGYLLKLLTCKDLPETQACFFDLIKMYFPTLYDIKHLMKFCNS-L-HGGLNKLAELL-EVER---- 225 (274)
Q Consensus 153 ~~~v~Wvtfhg~yD~~yl~k~l~~~~LP~~~~~F~~~l~~~FP~iyD~K~la~~~~~-l-~~~L~~la~~L-~v~r---- 225 (274)
++++++|.++.-+|+..|.+ .|-+++. .++||..++..+.. . ..+|..||++. +.+-
T Consensus 66 ~~~~~ki~hn~K~d~~~L~~--~gi~~~~--------------~~fDt~laayll~p~~~~~~L~~la~~yl~~~~~~~e 129 (171)
T d2hhva1 66 DETKKKSMFDSKRAAVALKW--KGIELCG--------------VSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDE 129 (171)
T ss_dssp CTTSEEEESSHHHHHHHHHT--TTCCCCC--------------EEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHH
T ss_pred CccceeeccchHHHHHHHHH--CCCCCcc--------------ccccHHHHHHHhcCCcccccHHHHHHHHcCCCCccce
Confidence 57789998888888877755 2544332 25799999988853 2 45899999864 3221
Q ss_pred --CCC------------ccccchhhHHHHHHHHHHHHhh
Q 023963 226 --IGI------------CHQAGSDSLLTCCTFMKMKDNF 250 (274)
Q Consensus 226 --~g~------------~HqAGsDS~lT~~~F~~l~~~~ 250 (274)
.|+ .--|..|+..|.+.+-+|.+..
T Consensus 130 ~~~gkg~k~~~~~~~~~~~yaa~da~~~~~L~~~l~~~L 168 (171)
T d2hhva1 130 AVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDEL 168 (171)
T ss_dssp HHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 1237778888888888877653
No 25
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]}
Probab=26.27 E-value=5 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCCceEEEcCcccHHHHHHHHHHHhhcCCeeEEeecccccccc
Q 023963 7 SESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLR 49 (274)
Q Consensus 7 ~~~~~i~~Vw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~ 49 (274)
...+--+.|. +++++.|.....++.=.+|+.+||.+-|++..
T Consensus 33 ~~~iyYIsVN-~~~k~~L~~~~~~inL~~~~~~~T~Y~GLGVD 74 (82)
T d2nrha1 33 EQKIFYINVN-EHLKEHLKNQKNFINLEPYFLFDTIYQGLGID 74 (82)
T ss_dssp ---CEEEECC-GGGHHHHHHCSSCEECGGGCCCCCSCBTCCHH
T ss_pred CCcEEEEEeC-HHHHHHHhcCcceEehhHeEEeeeeeeccCcc
Confidence 3456678896 56777777766677778999999999999753
No 26
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]}
Probab=26.09 E-value=72 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=45.3
Q ss_pred EEcCcccHHHHHHHHHHHhhcCC--eeEEee------cccccccccCCCCCCChHHHHHHHHhccc-ccceeeeeeeeec
Q 023963 13 REVWNDNLEHEFSLIRDIVDDYP--YIAMDT------EFPGIVLRSIGNFKSSSEYNYQNLKVNVD-LLKLIQLGLTFTD 83 (274)
Q Consensus 13 ~~Vw~~N~~~el~~I~~~i~~~~--fIAiDt------EFpGv~~~p~~~~~~t~e~rY~~lr~nvd-~~~iiQlGit~~~ 83 (274)
.++...++++.++.|.+.+++++ ||++|. ..||+.....+ --+.++-...++.-+. .-+++-+.|+=++
T Consensus 216 ~~~~~~g~~~~~~~~~~~l~~~~~vylS~DiDvlDps~aPgv~~P~pg--Gls~~el~~~l~~i~~~~~~l~g~divE~~ 293 (324)
T d1xfka_ 216 KAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAASAPGVSAPAAR--GVSLEALAPYFDRILHYKNKLMIADIAEYN 293 (324)
T ss_dssp GGCSTTTHHHHHHHHHHHHHTCSEEEEEEEGGGSBTTTCCSSSSCBSS--CCCHHHHHHHHHHHHHCTTTEEEEEEECCC
T ss_pred HHHhhhhhHHHHhhhHhhhccCCceEEEEeccccchhhcCCCCCCCCC--CCCHHHHHHHHHHHHccCCCEEEEEEEEEC
Confidence 35677888999999999999876 889885 46676543222 2367777777654332 3356666666444
No 27
>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]}
Probab=24.88 E-value=33 Score=21.98 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=27.5
Q ss_pred HHHHHcCCcc--CC---Ccc-ccchhhHHHHHHHHHHHHhhc
Q 023963 216 KLAELLEVER--IG---ICH-QAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 216 ~la~~L~v~r--~g---~~H-qAGsDS~lT~~~F~~l~~~~~ 251 (274)
-+|+.|+++. +. ... ..|.||+.......++.+.|.
T Consensus 11 iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~ 52 (74)
T d1f80d_ 11 IIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFD 52 (74)
T ss_dssp HHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhC
Confidence 4678888876 32 223 489999999999999988863
No 28
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.46 E-value=63 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhccccHHH
Q 023963 185 CFFDLIKMYFPTLYDIKHLMKFCNSLHGGLNK 216 (274)
Q Consensus 185 ~F~~~l~~~FP~iyD~K~la~~~~~l~~~L~~ 216 (274)
+=.+.|+.+||.+ |...|-..+..-.|-++.
T Consensus 11 e~i~~LkeMFP~~-D~~vI~~VL~a~~G~vd~ 41 (59)
T d1wgla_ 11 EDLKAIQDMFPNM-DQEVIRSVLEAQRGNKDA 41 (59)
T ss_dssp HHHHHHHHHCSSS-CHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHcCCCHHH
Confidence 3388999999998 877777666544444544
No 29
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.08 E-value=31 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred cchhhHHHHHHcCCCccc--hhhCCCChHHHHHHHHHcC
Q 023963 113 YAYDSIKLLSRSGIDFKK--NKEKGVDAMRFSELLMSSG 149 (274)
Q Consensus 113 ~~~~Si~fL~~~G~DF~k--~~~~GI~~~~f~e~l~~sg 149 (274)
-+..++++|.++|++|.- ..+++++...+.+.+...|
T Consensus 12 ~srka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g 50 (114)
T d1rw1a_ 12 TMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHG 50 (114)
T ss_dssp HHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcc
Confidence 357799999999999987 6778999998888876655
No 30
>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.03 E-value=45 Score=23.03 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHHcCCcc--CC---Ccc-ccchhhHHHHHHHHHHHHhhc
Q 023963 216 KLAELLEVER--IG---ICH-QAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 216 ~la~~L~v~r--~g---~~H-qAGsDS~lT~~~F~~l~~~~~ 251 (274)
-|++.||++. +. ... .-|.||+.......+|.+.|.
T Consensus 15 iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~ 56 (115)
T d1klpa_ 15 IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp HHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHC
Confidence 4577888765 32 233 489999999999999999873
No 31
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.97 E-value=25 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHcCCc-c--CCC---ccccchhhHHHHHHHHHHHHhhc
Q 023963 214 LNKLAELLEVE-R--IGI---CHQAGSDSLLTCCTFMKMKDNFF 251 (274)
Q Consensus 214 L~~la~~L~v~-r--~g~---~HqAGsDS~lT~~~F~~l~~~~~ 251 (274)
++.+|+.||++ + ++. ..+-|-||+++.+.=.+|.+.|.
T Consensus 10 ~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g 53 (76)
T d2pnga1 10 VKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHD 53 (76)
T ss_dssp GGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhC
Confidence 45678889873 2 443 34799999999999888988863
No 32
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]}
Probab=20.29 E-value=57 Score=26.52 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=44.2
Q ss_pred EcCcccHHHHHHHHHHHhh----cCCeeEEe------ecccccccccCCCCCCChHHHHHHHHhcccccceeeeeeeeec
Q 023963 14 EVWNDNLEHEFSLIRDIVD----DYPYIAMD------TEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTD 83 (274)
Q Consensus 14 ~Vw~~N~~~el~~I~~~i~----~~~fIAiD------tEFpGv~~~p~~~~~~t~e~rY~~lr~nvd~~~iiQlGit~~~ 83 (274)
+|+..+.++.+..+.+.+. +--||++| ...||+.....+ -.+.++-.+.+|.-...-+++=+.|+=++
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~~~~iyvs~DiDvlDps~~Pgt~~p~pg--Gls~~e~~~~l~~l~~~~~v~g~divE~~ 275 (306)
T d1pq3a_ 198 DIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVG--GLTYREGMYIAEEIHNTGLLSALDLVEVN 275 (306)
T ss_dssp HHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCSBSSCCSS--CBCHHHHHHHHHHHHTTTCEEEEEEECBC
T ss_pred hhhhhcHHHHHHHHHHHhhccCCCcEEEEEeecccChhhhcCCCCCCCC--CCCHHHHHHHHHHHhccCCEEEEEEEEEC
Confidence 3556666777777776653 23589999 778887643222 24778888888877776666555555433
Done!