BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023965
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/274 (81%), Positives = 250/274 (91%), Gaps = 1/274 (0%)
Query: 1 MDNANIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRA 60
M + + +PPKGGFSFDLC+RNDML++KG+ PS+ KTGTTIVGLIF++GVILGADTRA
Sbjct: 1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGL-KAPSFLKTGTTIVGLIFKDGVILGADTRA 59
Query: 61 TAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120
T G IV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRV+TAL
Sbjct: 60 TEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITAL 119
Query: 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFES 180
TLLK HLF YQGHV AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM+VFE+
Sbjct: 120 TLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEA 179
Query: 181 KYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISS 240
KY+EGLT++EGI LV E+ICSGIFNDLGSGSNVDICVITKG+KEYLRN+ PNPRTY+SS
Sbjct: 180 KYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEPNPRTYVSS 239
Query: 241 KGYSFPKKTEVLLTKITPLENQVEVIEVGDSMEE 274
KGYSF KKTEVLLTKITPL +VE+ EVG++MEE
Sbjct: 240 KGYSFTKKTEVLLTKITPLLERVEITEVGEAMEE 273
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/275 (82%), Positives = 251/275 (91%), Gaps = 2/275 (0%)
Query: 1 MDNANIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRA 60
M +++ IPPKGGFSFDLC+RNDML++KG+ PS+ KTGTTIVGLIF++GVILGADTRA
Sbjct: 1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGL-KAPSFLKTGTTIVGLIFKDGVILGADTRA 59
Query: 61 TAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120
T G IV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRVVTAL
Sbjct: 60 TEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTAL 119
Query: 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFES 180
TLLK HLF YQGHV AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM+VFE+
Sbjct: 120 TLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEA 179
Query: 181 KYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISS 240
KY+EGLT++EGI LV EAICSGIFNDLGSGSNVDICVITKG KEYLRN+ PNPRTY+SS
Sbjct: 180 KYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEPNPRTYVSS 239
Query: 241 KGYSFPKKTEVLLTKITPLENQVEVIEV-GDSMEE 274
KGYSF KKTEVLLTKITPL +VE++EV G++MEE
Sbjct: 240 KGYSFTKKTEVLLTKITPLLERVEIVEVAGEAMEE 274
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 317 bits (812), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 202/276 (73%), Gaps = 17/276 (6%)
Query: 1 MDNANIGIPPKGGFSFDLCRRNDML----SKKGIVPPPSYRKTGTTIVGLIFQNGVILGA 56
M ++ PP GGFSFD CRRN +L +K+G P RKTGTTI G+++++G++LGA
Sbjct: 1 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGY-KLPKVRKTGTTIAGVVYKDGIVLGA 59
Query: 57 DTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV 116
DTRAT G +V DKNC KIH+++PNIYCCGAGTAADT+ T ++SS L+LH TGR RV
Sbjct: 60 DTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRV 119
Query: 117 VTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 176
VTA +LK LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA
Sbjct: 120 VTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 179
Query: 177 VFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR- 235
VFE K+R + +EE +LV EAI +GIFNDLGSGSN+D+CVI+K ++LR + +PN +
Sbjct: 180 VFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKG 239
Query: 236 ----TYISSKGYSFPKKTEVLLTKITPLENQVEVIE 267
Y KG T VL KITPLE +EV+E
Sbjct: 240 TRLGRYRCEKG-----TTAVLTEKITPLE--IEVLE 268
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 316 bits (810), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 201/276 (72%), Gaps = 17/276 (6%)
Query: 1 MDNANIGIPPKGGFSFDLCRRNDML----SKKGIVPPPSYRKTGTTIVGLIFQNGVILGA 56
M ++ PP GGFSFD CRRN +L +KKG P + RKTGTTI G+++++G++LGA
Sbjct: 1 MAAVSVFQPPVGGFSFDNCRRNAVLEADFAKKGFKLPKA-RKTGTTIAGVVYKDGIVLGA 59
Query: 57 DTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV 116
DTRAT G +V DKNC KIH+++PNIYCCGAGTAADT+ T ++SS L+LH TGR RV
Sbjct: 60 DTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRV 119
Query: 117 VTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 176
VTA +LK LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA
Sbjct: 120 VTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 179
Query: 177 VFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR- 235
VFE K+R + +EE LV EAI +GIFNDLGSGSN+D+CVI+K ++LR +PN +
Sbjct: 180 VFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKG 239
Query: 236 ----TYISSKGYSFPKKTEVLLTKITPLENQVEVIE 267
Y KG T VL K+TPLE +EV+E
Sbjct: 240 TRLGRYRCEKG-----TTAVLTEKVTPLE--IEVLE 268
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 315 bits (808), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/273 (57%), Positives = 201/273 (73%), Gaps = 17/273 (6%)
Query: 10 PKGGFSFDLCRRNDML----SKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSI 65
P GGFSFD CRRN +L +KKG P + RKTGTTI G+++++G++LGADTRAT G +
Sbjct: 10 PVGGFSFDNCRRNAVLEADFAKKGFKLPKA-RKTGTTIAGVVYKDGIVLGADTRATEGMV 68
Query: 66 VCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKS 125
V DKNC KIH+++PNIYCCGAGTAADT+ T ++SS L+LH TGR RVVTA +LK
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQ 128
Query: 126 HLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG 185
LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMAVFE K+R
Sbjct: 129 MLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD 188
Query: 186 LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR-----TYISS 240
+ +EE LV EAI +GIFNDLGSGSN+D+CVI+K ++LR + +PN + Y
Sbjct: 189 MEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCE 248
Query: 241 KGYSFPKKTEVLLTKITPLENQV--EVIEVGDS 271
KG T VL K+TPLE +V E+++ D+
Sbjct: 249 KG-----TTAVLTEKVTPLELEVLEEIVQTMDT 276
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 311 bits (796), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/263 (59%), Positives = 198/263 (75%), Gaps = 9/263 (3%)
Query: 10 PKGGFSFDLCRRNDML----SKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSI 65
P GGFSFD CRRN +L +KKG P+ RKTGTTI G+++++G++LGADTRAT G +
Sbjct: 10 PVGGFSFDNCRRNAVLEADFAKKGY-KLPTARKTGTTIAGVVYKDGIVLGADTRATEGMV 68
Query: 66 VCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKS 125
V DKNC KIH+++PNIYCCGAGTAADT+ T ++SS L+LH TGR RVVTA +LK
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQ 128
Query: 126 HLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG 185
LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMAVFE K+R
Sbjct: 129 MLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD 188
Query: 186 LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSF 245
+ +EE LV EAI +GIFNDLGSGSN+D+CVI+K ++LR + +PN + + Y
Sbjct: 189 MEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGR-YRC 247
Query: 246 PKKTEVLLT-KITPLENQVEVIE 267
K T +LT K+T LE +EV+E
Sbjct: 248 EKGTNAVLTEKVTTLE--IEVLE 268
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 310 bits (795), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/268 (61%), Positives = 203/268 (75%), Gaps = 9/268 (3%)
Query: 1 MDNANIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRA 60
M+N N +GGF FDLC RN++L K G+ + KTGTTIVG++++ GV+LGADTRA
Sbjct: 1 MENLN-----RGGFDFDLCNRNNVLEKTGL-RMKGFMKTGTTIVGVVYKGGVVLGADTRA 54
Query: 61 TAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120
T G IV DKNCEKIHY+A NIYCCGAGTAADTE+ T ++SS+L+LH+ TG+++RV+TAL
Sbjct: 55 TEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITAL 114
Query: 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFES 180
T+LK LFKYQGH+ AAL+LGG+D GP LHTIYPHGSTD LP+ TMGSGSLAAMAVFE+
Sbjct: 115 TMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEA 174
Query: 181 KYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISS 240
KY+ +TKEE I+LV EAI SGIFNDLGSGSNVD+ VI LRN+Q PN R + +
Sbjct: 175 KYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSGVTVLRNYQTPNERKF-RN 233
Query: 241 KGYSFPK-KTEVLLTKITPLENQVEVIE 267
Y F + T VL I PL +V VIE
Sbjct: 234 NPYIFKQGTTPVLKQDIAPLSTKV-VIE 260
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 310 bits (794), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 153/262 (58%), Positives = 195/262 (74%), Gaps = 7/262 (2%)
Query: 10 PKGGFSFDLCRRNDML----SKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSI 65
P GGFSFD CRRN +L +KKG P+ RKTGTTI G+++++G++LGADTRAT G +
Sbjct: 10 PVGGFSFDNCRRNAILEADFAKKGY-KLPTARKTGTTIAGVVYKDGIVLGADTRATEGMV 68
Query: 66 VCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKS 125
V DKNC KIH+++PNIYCCGAGTAADT+ T ++SS L+LH TGR RVVTA +LK
Sbjct: 69 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQ 128
Query: 126 HLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG 185
LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMAVFE K+R
Sbjct: 129 MLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPE 188
Query: 186 LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSF 245
+ +EE LV EAI +GIFNDLGSGSN+D+CVI+K ++LR + +PN + +
Sbjct: 189 MEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCE 248
Query: 246 PKKTEVLLTKITPLENQVEVIE 267
T VL K+T L+ +EV+E
Sbjct: 249 KGTTAVLTEKVTALD--IEVLE 268
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 174/243 (71%), Gaps = 3/243 (1%)
Query: 12 GGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNC 71
G SFD +RN+ L++ P + TGTTIVG+ F NGV++ ADTR+T G IV DKNC
Sbjct: 2 AGLSFDNYQRNNFLAENSHTQPKA-TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNC 60
Query: 72 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ 131
K+H ++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK HLFKYQ
Sbjct: 61 AKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ 120
Query: 132 GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191
GH+ A L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMAV ES +++ LTKEE
Sbjct: 121 GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 180
Query: 192 ISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNPRTYISSKGYSFPKKTE 250
I L +AI +GI+NDLGSGSNVD+CV+ G D EYLRN+ PN R K Y FP+ T
Sbjct: 181 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTT 239
Query: 251 VLL 253
+L
Sbjct: 240 AVL 242
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 271 bits (694), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/248 (54%), Positives = 177/248 (71%), Gaps = 2/248 (0%)
Query: 6 IGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSI 65
+GI + GF F+ +RN +L +KG P P TGTTIVG+I ++ ++LGADTRATAG I
Sbjct: 2 MGINERKGFDFEYYQRNLLLQEKGF-PTPKATSTGTTIVGVIAKDCIVLGADTRATAGPI 60
Query: 66 VCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKS 125
+ DKNC+K+H ++PNI+C GAGTAADTE VT M+SS ++LH +T R+ RVVTALT+LK
Sbjct: 61 IADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQ 120
Query: 126 HLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG 185
HLF+YQGH+ A LVLGG D GPHL TI HGS+D LP+ +GSGSLAA++V E+KY+
Sbjct: 121 HLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPD 180
Query: 186 LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSF 245
L + E + LV EAI +GIFNDLGSGSN D+ VI + R + PN R SK Y++
Sbjct: 181 LERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSK-YTY 239
Query: 246 PKKTEVLL 253
+ T +L
Sbjct: 240 DRGTTAVL 247
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 177/269 (65%), Gaps = 10/269 (3%)
Query: 8 IPPKGGFSFDLCRRNDMLSKKGIVP---PPSYRKTGTTIVGLIFQNGVILGADTRATAGS 64
+ P+GGFSF+ C+RN L + ++P P RKTGTTI GL+FQ+GVILGADTRAT S
Sbjct: 6 LEPRGGFSFENCQRNASLER--VLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDS 63
Query: 65 IVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLK 124
+V DK+CEKIH++AP IYCCGAG AAD E T MV+S+++LH TGRE RV T +L+
Sbjct: 64 VVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILR 123
Query: 125 SHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
LF+YQGHV A+L++GGVD TGP L+ ++PHGS LPF +GSG AA+AV E +++
Sbjct: 124 QTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQP 183
Query: 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYS 244
+T E L+ EA+ +GI DLGSG NVD CVITK + LR P S + +
Sbjct: 184 NMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHF 243
Query: 245 FPKKTEVLLTKITPL-----ENQVEVIEV 268
P T VL + PL E V+ +EV
Sbjct: 244 VPGTTAVLTQTVKPLTLELVEETVQAMEV 272
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 260 bits (665), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/271 (50%), Positives = 177/271 (65%), Gaps = 14/271 (5%)
Query: 8 IPPKGGFSFDLCRRNDMLSKKGIVP---PPSYRKTGTTIVGLIFQNGVILGADTRATAGS 64
+ P GGFSF+ C+RN L ++P P RKTGTTI GL+F++GVILGADTRAT S
Sbjct: 6 VEPTGGFSFENCQRNASLEH--VLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDS 63
Query: 65 IVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLK 124
+V DK+CEKIH++AP IYCCGAG AADTE T M +S+++LH TGRE RV T +L+
Sbjct: 64 VVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILR 123
Query: 125 SHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
LF+YQGHV A+LV+GGVD GP L+ ++PHGS LPF +GSG AA+A+ E +++
Sbjct: 124 QTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQP 183
Query: 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKG-Y 243
+T E L+ EAI +GI +DLGSG NVD CVIT G + R L P + G Y
Sbjct: 184 NMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR--ALSTPTEPVQRAGRY 241
Query: 244 SF-PKKTEVLLTKITP-----LENQVEVIEV 268
F P T VL ++ P LE V+ +EV
Sbjct: 242 RFAPGTTPVLTREVRPLTLELLEETVQAMEV 272
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 257 bits (656), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 133/269 (49%), Positives = 171/269 (63%), Gaps = 10/269 (3%)
Query: 8 IPPKGGFSFDLCRRNDMLSKKGIVP---PPSYRKTGTTIVGLIFQNGVILGADTRATAGS 64
+ P+ GFSF+ C RN L + +P P RKTGTTI GL+FQ+GVILGADTRAT S
Sbjct: 6 LEPQRGFSFENCERNAALQRA--LPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDS 63
Query: 65 IVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLK 124
+V DK CEKIH++AP IYCCGAG AAD E T M +S ++LH TGRE RV T +L+
Sbjct: 64 VVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLR 123
Query: 125 SHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
LF+YQG+V A+L++GGVD TGP L++++PHGS LPF +GSG AA+AV E +++
Sbjct: 124 QTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQP 183
Query: 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYS 244
+T E L+ EAI +GI DLGSG NVD CVIT + LR P SS+
Sbjct: 184 NMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKMLRALSSPTKPIERSSQYRF 243
Query: 245 FPKKTEVLLTKITPL-----ENQVEVIEV 268
P T VL + PL E V+ ++V
Sbjct: 244 APGTTPVLSQTVVPLTLELVEETVQAMDV 272
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/268 (49%), Positives = 174/268 (64%), Gaps = 14/268 (5%)
Query: 11 KGGFSFDLCRRNDMLSKKGIVP---PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVC 67
+GGFSF+ C+RN L ++P P RKTGTTI GL+F++GVILGADTRAT S+V
Sbjct: 9 RGGFSFENCQRNASLEH--VLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVA 66
Query: 68 DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHL 127
DK+CEKIH++AP IYCCGAG AADTE T M +S+++LH TGRE RV T +L+ L
Sbjct: 67 DKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTL 126
Query: 128 FKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLT 187
F+YQGHV A+L++GGVD GP L++++PHGS LPF +GSG AA+A+ E +++ +T
Sbjct: 127 FRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMT 186
Query: 188 KEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKG-YSFP 246
E L+ EAI +GI DLGSG +VD CVIT G + R L +P + G Y F
Sbjct: 187 LEAAQELLVEAITAGILGDLGSGGSVDACVITAGGAKLQRA--LSSPIEPVQRAGQYRFA 244
Query: 247 KKT------EVLLTKITPLENQVEVIEV 268
T EV + LE V+ +EV
Sbjct: 245 PGTTPVQTQEVRALTLELLEETVQAMEV 272
>sp|Q8SQN7|PSB2_ENCCU Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PUP1 PE=1 SV=1
Length = 227
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 130/193 (67%), Gaps = 1/193 (0%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTTIVG+ ++ GVIL ADTR+T G +V DKNC KIH + I CCGAGTAAD V
Sbjct: 4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVAR 63
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHG 157
M S +L+L + R V + HL KY G + AAL++GG+D+ G HL+ I+PHG
Sbjct: 64 MASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHG 123
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
S ++ F ++GSGSL A+A ES+YR + K+E I L C+A+ +GI NDL SGSN+D+CV
Sbjct: 124 SENSALFVSLGSGSLGAIATLESRYR-AMDKDEAIDLACDAVKAGILNDLYSGSNIDVCV 182
Query: 218 ITKGDKEYLRNHQ 230
I E+LRN++
Sbjct: 183 IDYSGVEFLRNYR 195
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 10/229 (4%)
Query: 2 DNANIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRAT 61
D +N+ P G FS + RR D L K KTGTT VG+ + GV+L D RA+
Sbjct: 19 DRSNVFGPELGEFS-NADRRADELGDK-------ETKTGTTTVGIKTEEGVVLATDMRAS 70
Query: 62 AGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALT 121
G +V K+ +K+ + P AG+ + +++ + ++++L+ G E + AL+
Sbjct: 71 MGYMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISSLRAEVRLYEARRG-EDMSMQALS 129
Query: 122 LLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK 181
L + + G +LGGVD TGPH+++I P GS + GSGS A+ V E +
Sbjct: 130 TLVGNFLRSGGFYVVQPILGGVDETGPHIYSIDPAGSILEEEYTVTGSGSQYALGVLEQE 189
Query: 182 YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQ 230
+ +GL+ EE + +AI S + DL SG+ ++I V+T+ D ++ HQ
Sbjct: 190 FEDGLSIEEAKGVATKAIRSAVERDLASGNGINIAVVTE-DGVDIQRHQ 237
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 16/226 (7%)
Query: 24 MLSKKGIVPPPSYR-------------KTGTTIVGLIFQNGVILGADTRATAGSIVCDKN 70
+++ +G P P++ TGTTI+ + F GV+LGAD+R T GS + ++
Sbjct: 5 LVAARGTRPAPAWGPEAIAPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRV 64
Query: 71 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY 130
+K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K ++Y
Sbjct: 65 TDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRY 124
Query: 131 QGHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKE 189
+ + A +++ G D G ++++ G PFA GSGS ++ YREG+TKE
Sbjct: 125 REDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKE 184
Query: 190 EGISLVCEAICSGIFNDLGSGSNVDICVITKG--DKEYLRNHQLPN 233
E + A+ + D SG + + I + +++ L Q+P
Sbjct: 185 ECLQFTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQIPK 230
>sp|Q18GX3|PSB_HALWD Proteasome subunit beta OS=Haloquadratum walsbyi (strain DSM 16790)
GN=psmB PE=3 SV=1
Length = 243
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 9/219 (4%)
Query: 2 DNANIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRAT 61
D +++ P G F R ND+ + KTGTT VGL Q+G +L D RA+
Sbjct: 19 DRSDVFSPELGEFPNADDRANDIGDME--------TKTGTTTVGLKTQDGTVLATDMRAS 70
Query: 62 AGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALT 121
G +V K+ +K+ + P AG+ + +++ + ++++L+ G E + AL+
Sbjct: 71 LGRMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISSIRAEVRLYEARRG-EDMSMEALS 129
Query: 122 LLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK 181
L + + G +LGGVD GPH+++I P GS + GSGS A+ V E +
Sbjct: 130 TLLGNFLRSGGFFIVQPILGGVDDDGPHIYSIDPAGSIIEEEYTVTGSGSQYALGVLEQQ 189
Query: 182 YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
Y E L+ EE ++ +I S + DL SG+ +++CV+T+
Sbjct: 190 YNEDLSIEEAKTVAARSIESAVERDLASGNGINVCVVTE 228
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 1/182 (0%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTTI+G+ + GV+LGAD+R + G V ++ +KI + N+Y C +G+AAD++ V+D V
Sbjct: 13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYV 72
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGS 158
L H G+ + V A L + + + +Q +++GG D G ++ I P G+
Sbjct: 73 RYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGT 132
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
PFA GSGS F+ ++EG+T+EE LV A+ I D SG V I
Sbjct: 133 VLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTI 192
Query: 219 TK 220
K
Sbjct: 193 NK 194
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
TGTTI+ + F GV+LGAD+R T GS + ++ +K+ + I+CC +G+AADT+AV D
Sbjct: 32 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVAD 91
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVD-ATGPHLHTIYPH 156
V+ QL H V TA +L K ++Y+ + A +++ G D G ++++
Sbjct: 92 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMG 151
Query: 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
G FA GSGS ++ YREG+TKEE + A+ + D SG + +
Sbjct: 152 GMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLA 211
Query: 217 VITKG--DKEYLRNHQLPN 233
I + +++ L Q+P
Sbjct: 212 AIAESGVERQVLLGDQIPK 230
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 109/193 (56%), Gaps = 6/193 (3%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTT VG++F GVIL + RAT G+++ K +K+H + I AG D + +
Sbjct: 9 KTGTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVR 68
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQG---HVQAALVLGGVDATGPHLHTI- 153
+++ + L+ G++ V A T+L ++L + + +VQ L++GGVD +GP ++++
Sbjct: 69 IINVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQ--LLVGGVDTSGPSVYSVD 126
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
G+T F + GSGSL A V E +++ +T+EE I L A+ + + D SG
Sbjct: 127 AAGGATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASGEGY 186
Query: 214 DICVITKGDKEYL 226
++ +IT+ EYL
Sbjct: 187 NVVIITQEKFEYL 199
>sp|Q2NI68|PSB_METST Proteasome subunit beta OS=Methanosphaera stadtmanae (strain DSM
3091) GN=psmB PE=3 SV=1
Length = 205
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 4/182 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG + +GV+L +TRAT GS+V +KN +K+ + I AGT + +++ D++
Sbjct: 9 GTTTVGFVCTDGVVLATETRATMGSLVANKNADKLFQIDDKIGATIAGTVSHAQSLMDIL 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGS 158
+++ L++ ++ + AL +L S++ K + + VQ +L GVD G L+T+ P GS
Sbjct: 69 KAEISLYKLRNEKDMSI-DALAVLTSNILKSRPYYVQT--ILAGVDKDGAKLYTLDPSGS 125
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
F + GSGS A V E +Y E +T EEG + +AI S + D+ SG+N + VI
Sbjct: 126 YIPDTFTSTGSGSPYAFGVLEDRYNEDITTEEGKKIAIKAITSAMERDVYSGNNYRLGVI 185
Query: 219 TK 220
TK
Sbjct: 186 TK 187
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 101/181 (55%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VGL+ ++ V+L AD RATAG + +K KI + +I AGT D + + D +
Sbjct: 12 GTTTVGLVGKDFVVLAADRRATAGYFIANKQTWKIVEIDSHIAATIAGTVGDAQQLVDRL 71
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGST 159
+ + ++ TG V + TL LF+Y+ + +++GGVD+ GP L ++ G+
Sbjct: 72 RVEARYYKTITGDSMPVKSVATLASLILFQYRPILSVQMLIGGVDSDGPSLFSVDWLGTV 131
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219
+ GSGS A+++ E +YRE L+ EE ++L +A+ + D GSG VDI IT
Sbjct: 132 TREKYTATGSGSPYAVSLLEHEYREDLSLEEAVNLAVKAVNIALARDPGSGEGVDIATIT 191
Query: 220 K 220
K
Sbjct: 192 K 192
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT +G++F++G+IL + RAT GS++ K +K++ +A I AG D + + ++
Sbjct: 9 GTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARIM 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQG---HVQAALVLGGVDATGPHLHTIYPH 156
S + L++ GR V + TLL ++L + +G +VQ L++GGVDATGP ++++
Sbjct: 69 SVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQ--LLVGGVDATGPSVYSVDAM 126
Query: 157 -GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G+T GSGS A V E +Y++ LT++E I L A+ + + D SG + +
Sbjct: 127 GGATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDSASGEGIHV 186
Query: 216 CVITKGDKEYLRNHQLPN 233
+ITK L +L
Sbjct: 187 VIITKDAYSELSEERLEQ 204
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 1/188 (0%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTTI L +++GVIL AD+R T G+ + ++ +K+ + NI+CC +G+AADT+ V D
Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVAD 81
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVD-ATGPHLHTIYPH 156
++ L ++R G + V TA TL ++ + + A L++ G D TG +++I
Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLG 141
Query: 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
GS P A GSGS ++ +RE +T+EE + + A+ + D SG + +
Sbjct: 142 GSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMV 201
Query: 217 VITKGDKE 224
++ K E
Sbjct: 202 ILNKDGME 209
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
TGTTI+ + F GV+LGAD+R T GS + ++ +K+ + +I+CC +G+AADT+AV D
Sbjct: 31 STGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVAD 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDAT-GPHLHTIYPH 156
V+ QL H V TA +L K ++Y+ + A +++ G D G ++++
Sbjct: 91 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMG 150
Query: 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
G FA GSGS ++ YREG+TK+E + A+ + D SG + +
Sbjct: 151 GMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLA 210
Query: 217 VITKG--DKEYLRNHQLPN 233
I + +++ L Q+P
Sbjct: 211 AIQQSGVERQVLLGDQIPK 229
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
TGTTI+ + F GV+LGAD+R T GS + ++ +K+ + +I+CC +G+AADT+AV D
Sbjct: 31 STGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVAD 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDAT-GPHLHTIYPH 156
V+ QL H V TA +L K ++Y+ + A +++ G D G ++++
Sbjct: 91 AVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMG 150
Query: 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
G FA GSGS ++ YREG+TK+E + A+ + D SG + +
Sbjct: 151 GMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLA 210
Query: 217 VITKG--DKEYLRNHQLPN 233
I + +++ L Q+P
Sbjct: 211 AIQESGVERQVLLGDQIPK 229
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 2/197 (1%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTTI+ + F GV+LG+D+R +AG V ++ K+ + IYC +G+AAD + + +
Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAE 75
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHG 157
MV+ QL +H G + +V +A TL+K+ +KY+ + A L++ G D G + +G
Sbjct: 76 MVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNG 135
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
PFA GSGS +++YR+ ++KE+ V + + D SG +
Sbjct: 136 LLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVT 195
Query: 218 I-TKGDKEY-LRNHQLP 232
I KG +E + ++LP
Sbjct: 196 IDEKGAEEKCILGNELP 212
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 3/196 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GT+I+ + + GVI+GAD+R T G+ + ++ KI + IYCC +G+AADT+A++D V
Sbjct: 14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYV 73
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGS 158
L++H E V TA +L + + + ++ A +++ G D G ++ I GS
Sbjct: 74 RYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGS 133
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
PFA GSGS +SK++ +TK+E I V ++ +F D SG + +C+I
Sbjct: 134 MVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCII 193
Query: 219 TKG--DKEYLRNHQLP 232
K +++ + + LP
Sbjct: 194 DKNGVERKMIPGNNLP 209
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 33 PPSYRK--TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90
P Y++ TGTT VGL+F GVIL + RAT G ++ K +K++ +A I AG
Sbjct: 2 PEQYQESMTGTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVG 61
Query: 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHL-----FKYQGHVQAALVLGGVDA 145
D + + +++ + L++ RE V A TLL ++L F Y +VQ L++GG+D
Sbjct: 62 DAQQLARIITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPY--YVQ--LLVGGIDD 117
Query: 146 TGPHLHTIYPH-GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIF 204
GP ++++ G+T + GSGS A V E +YR G+ ++E + L A+ S +
Sbjct: 118 HGPSVYSVDAMGGATKEEDIVSTGSGSPMAYGVLEDRYRPGMNEDEAVELAVRALRSAMK 177
Query: 205 NDLGSGSNVDICVITKGDKE 224
D GSG + + VITK E
Sbjct: 178 RDAGSGEGIHVVVITKDRYE 197
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTTI+G+ + GV+LGAD+R + G V ++ +KI + N+Y C +G+AAD++ V+D V
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGS 158
L H G+ + V + L++ + + +Q L++GG D G ++ I G+
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGT 131
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
PFA GSGS F+ +++ +TKEE LV +A+ I D SG V +I
Sbjct: 132 VVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVII 191
Query: 219 TK---------GDKEYLRNHQL 231
GDK L + +L
Sbjct: 192 NSEGVTRNFYPGDKLQLWHEEL 213
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 2/197 (1%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTTI+ + F GV+LG+D+R +AG V ++ K+ + IYC +G+AAD + + +
Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAE 75
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHG 157
MV+ QL +H G + +V +A TL+K+ +KY+ + A L++ G D G + +G
Sbjct: 76 MVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNG 135
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
PFA GSGS +++YR+ ++KE+ V + + D SG +
Sbjct: 136 LLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVT 195
Query: 218 I-TKGDKEY-LRNHQLP 232
I KG +E + ++LP
Sbjct: 196 IDEKGAEEKCILGNELP 212
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG+I NG++L + RAT G+++ ++ +KI+ + NI AG+ D + + M+
Sbjct: 8 GTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRLARML 67
Query: 100 SSQLQLH--RYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHG 157
++ +L R H G S + AL++L S+L +++GGVD +GP L ++ P G
Sbjct: 68 QAESKLFELRRH-GPMS--INALSMLLSNLLWEYRIFYIQVLVGGVDKSGPKLFSLDPAG 124
Query: 158 STDT-LPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
T + F++ GSGS A V E +Y++ ++ E+G+ L +A+ S + D SG+ + C
Sbjct: 125 GRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSASGNGMQFC 184
Query: 217 VITKGDKE 224
VIT G E
Sbjct: 185 VITPGKVE 192
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 105/188 (55%), Gaps = 2/188 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GT+I+ + F++GVILGAD+R T G+ + ++ +K+ + I+CC +G+AADT+A+ D+V
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 78
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP-HLHTIYPHGS 158
L+L+ G S TA ++ K ++ + ++ A +++ G D ++TI GS
Sbjct: 79 QYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGS 137
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
LP+A GSGS + +RE ++KEE + + ++ I D SG + + V+
Sbjct: 138 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 197
Query: 219 TKGDKEYL 226
T E L
Sbjct: 198 TAAGVERL 205
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTTI+ + F GV+LG+D+R +AG V ++ K+ + IYC +G+AAD + + +
Sbjct: 16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAE 75
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDAT--GPHLHTIYP 155
MV+ QL +H + +V +A TL+K+ +KY+ + A L++ G D G T+
Sbjct: 76 MVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATL-- 133
Query: 156 HGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G PFA GSGS +++YR G+TKEE V + + D SG I
Sbjct: 134 GGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYI 193
Query: 216 CVITK--GDKEYLRNHQLP 232
I + D++ + + LP
Sbjct: 194 VTIDEHSTDEKVILGNDLP 212
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++F+ GV+L ++ RAT G ++ +K +KI+ +AP I AG D + + ++
Sbjct: 10 GTTTVGIVFETGVVLASEKRATMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLARLM 69
Query: 100 SSQLQLHRYHTGRESRVVTALTLLK-----SHLFKYQGHVQAALVLGGVDATGPHLHTIY 154
+ + L+ G+ V A TLL + +F + +VQ L++GGVD TGP L ++
Sbjct: 70 TVEANLYEIRRGKRISVQAASTLLSNILHGNRMFPF--YVQ--LLIGGVDETGPVLFSVD 125
Query: 155 PHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
G T GSGS A V E +Y G+ + I L A+ S I D GSG V
Sbjct: 126 AVGGTGKEDGIVATGSGSPMAYGVLEDRYTLGMDERSAIELAIRALRSAIKRDAGSGEGV 185
Query: 214 DICVITKGDKEYLRNHQL 231
+ VIT+ L + ++
Sbjct: 186 AVVVITEDSYHELSDEEI 203
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ +G++L ++ RAT G + K +K++ + + AG+ D + + +V
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
S + QL++ ES + +T L S+ + + L++GGVD GP ++++ G
Sbjct: 69 SVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMG 127
Query: 158 -STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
S + + GSGS A V E +YRE +T +EG+ L AI + D SG N+D+
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVV 187
Query: 217 VITKGDKEYLRNHQLPNPRTYIS 239
VITK + L ++ + R ++
Sbjct: 188 VITKEAFKRLDPEEVKSRRALLN 210
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 4/203 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ +G++L ++ RAT G + K +K++ + + AG+ D + + +V
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
S + QL++ ES + + L S+ + + L++GGVD GP ++++ P G
Sbjct: 69 SVESQLYKMRRN-ESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLDPMG 127
Query: 158 -STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
S + + GSGS A V E +YRE + +EG+ L AI + D SG N+D+
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYREDIAVKEGLDLAIRAIHNATKRDSASGENIDVV 187
Query: 217 VITKGDKEYLRNHQLPNPRTYIS 239
VITK + L ++ + R ++
Sbjct: 188 VITKEAFKRLDPEEVKSRRALLN 210
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
++GTT VGLI + VIL AD RATAG ++ + +KI ++ + +G AD + ++D
Sbjct: 23 RSGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSD 82
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQAALVLGGVDATGPHLHTIYP 155
++ +++L+ + V +LL + LF K+ ++ L++GG D T P L+T+
Sbjct: 83 VLREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYI-VQLIVGGYD-TQPRLYTLDL 140
Query: 156 HGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
GS + GSGS A V E +YRE L+ EE I + AI S + D SG D+
Sbjct: 141 FGSITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASGDGADV 200
Query: 216 CVI 218
VI
Sbjct: 201 VVI 203
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VGLIF GV+L + RAT G+++ K +KI+ + P I AG D + + ++
Sbjct: 11 GTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRIL 70
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFK---YQGHVQAALVLGGVDATGPHLHTIYPH 156
+ L G+ V A TLL ++L + Y +VQ L++GG D GP ++++
Sbjct: 71 QVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQ--LLMGGFDDEGPSVYSVDAM 128
Query: 157 -GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G+T GSGS A V E +YR G+ +++ L A+ S + D SG ++ +
Sbjct: 129 GGATKEEDIVATGSGSPFAYGVLEDQYRAGMKEDDAKDLAVRAVRSAMRRDSASGEDIMV 188
Query: 216 CVITKGDKE 224
VITK E
Sbjct: 189 VVITKDKYE 197
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ +G++L ++ RAT G+ + K +K++ + + AG+ D + + +V
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLV 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYP-H 156
+ + QL++ ES + + L S+ + + L++GGVD GP ++++
Sbjct: 69 NVESQLYKMRRN-ESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPGIYSLDALG 127
Query: 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
GS + + GSGS A V E +YRE +T +EG+ L AI + D SG N+D+
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYREDMTVKEGLDLAIRAIHNATKRDSASGENIDVV 187
Query: 217 VITK 220
VITK
Sbjct: 188 VITK 191
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 108/195 (55%), Gaps = 4/195 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ ++GV+L AD RA+ G+I+ +N KIH + ++ GAG D + ++
Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHL--FKYQGHVQAALVLGGVDATGPHLHTIYPHG 157
++ +L+ +G+ V TLL + + KY ++ A ++GG D P L+++ G
Sbjct: 70 RAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYL-AWFLVGGYDEK-PKLYSVDMVG 127
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
+AT GSG A ++ +S+Y++ LT EEGI L +AI + I D+ SG + +
Sbjct: 128 GITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVT 187
Query: 218 ITKGDKEYLRNHQLP 232
ITK + L + +L
Sbjct: 188 ITKEGYKELSDSELE 202
>sp|Q975D1|PSB2_SULTO Proteasome subunit beta 2 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB2 PE=3 SV=1
Length = 207
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
KTGTT VG+ ++GV+L AD RA+AG V K K+ Y+APNI AG+ AD + + D
Sbjct: 11 KTGTTTVGIKVKDGVVLAADRRASAGMYVAHKYVRKVLYVAPNIGITTAGSVADLQFIYD 70
Query: 98 MVSSQLQLHRYH--TGRESRVVTALTLLKSHLFKYQGHVQ--AALVLGGVDATGPHLHTI 153
++ + ++ Y+ TG + AL +++ + ++ +++GGVD P L+ +
Sbjct: 71 LLKN---IYHYNLITGMRPITIKALATYLANMLSFSKYLPYIVQILIGGVDEQ-PRLYNL 126
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
G + GSGS+ A+ V E +YR +T +E L AI S I D +G+ V
Sbjct: 127 DYVGDITEEDYTATGSGSVEAIGVIEDEYRPDMTLDEAADLARRAIFSSIKRDPYTGTGV 186
Query: 214 DICVITKG---DKEYLRNHQL 231
+ ITK +KEY ++
Sbjct: 187 IVSKITKNGHEEKEYYPQRKI 207
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 4/184 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ +G++L ++ RAT G + K +K++ + + AG+ D + + +V
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
S + QL++ ES + + L S+ + + L++GGVD GP ++++ G
Sbjct: 69 SVESQLYKMRRN-ESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLDAMG 127
Query: 158 -STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDIC 216
S + + GSGS A V E +Y+E + +EG+ L AI + + D SG N+D+
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYKEDIAVKEGLDLAIRAIHNAMKRDSASGENIDVV 187
Query: 217 VITK 220
VITK
Sbjct: 188 VITK 191
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 11/192 (5%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VGL+ + GV+L ADTRA+ G+I+ KN KIH + ++ GAG D + ++
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 100 SSQLQLHRYHTGRESRVVTALTLLK-----SHLFKYQGHVQAALVLGGVDATGPHLHTIY 154
++ L++ G+E V TLL S F Y G ++GG D P L ++
Sbjct: 70 KAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYDEK-PRLFSVD 124
Query: 155 PHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVD 214
G +A GSG A ++ +S+YRE ++ +GI L +AI I D+ +G +
Sbjct: 125 MVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLL 184
Query: 215 ICVITK-GDKEY 225
+ ITK G KEY
Sbjct: 185 VVTITKDGYKEY 196
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Query: 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93
PS K GTT VG++ ++GV+L AD RAT G++V K K+ + ++ GAG D
Sbjct: 5 PSAMK-GTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDIL 63
Query: 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--AALVLGGVDATGPHLH 151
++ ++ ++ +L+R GRE V AL L S++ H+ A ++GG D P L+
Sbjct: 64 SLVRLLRAEAKLYRAKVGREMS-VKALATLVSNVLHGSRHLPYFAWFLIGGYDVK-PRLY 121
Query: 152 TIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGS 211
+I G F GSG A+A+ E + +G+ +EGI L A+ + I D+ +G
Sbjct: 122 SIDAAGGVTEERFIAAGSGMEFALALLEENFSDGMGLDEGIDLAVRAVKAAIRRDVYTGE 181
Query: 212 NVDICVITK 220
V + ITK
Sbjct: 182 GVTVVAITK 190
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 6/204 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ +GV+L + RAT G + K +KI+ + + AG+ D + + ++
Sbjct: 9 GTTTVGIVCTDGVVLATEQRATMGHFIASKTAKKIYQIDDLVGMTTAGSVGDAQQIVRII 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
S + +L + +ES + +T L S++ Q + + L++GGVD GP ++++ G
Sbjct: 69 SVESKLFKMRR-QESITIKGITTLLSNMLSGQRYYPLMVQLLIGGVDKNGPAIYSLDALG 127
Query: 158 ST--DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
+T +T GSGS A V E +Y E +T EG+ L A+ + + D SG N+D+
Sbjct: 128 GNIEETRAVST-GSGSPMAYGVLEDRYTEDMTVVEGVDLAIRALHNAMKRDSASGENIDV 186
Query: 216 CVITKGDKEYLRNHQLPNPRTYIS 239
VITK E L + R ++
Sbjct: 187 VVITKDKYERLDPEAVMKKRELLN 210
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 11/199 (5%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VGLI + VIL D RA+ G+++ DK +K++ + I AG+ D +A+ +
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRAL 65
Query: 100 SSQLQLHRYHTGRESRVVTALTLL-----KSHLFKYQGHVQAALVLGGVDAT-GPHLHTI 153
++ +L++ TG+ TLL S +F + + ++GG D T GP L ++
Sbjct: 66 IAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQI----IIGGYDLTDGPKLFSL 121
Query: 154 YPHGS-TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSN 212
P G + F + GSGS A V E++Y ++ EEG+ L +A+ S + D SG+
Sbjct: 122 DPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGNG 181
Query: 213 VDICVITKGDKEYLRNHQL 231
V + VITK + L + ++
Sbjct: 182 VSVAVITKEGVKLLSDEEI 200
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 11/188 (5%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VG++ GV+L AD RA G+++ K +KI + I AG+ AD + + D++
Sbjct: 10 GTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDLM 69
Query: 100 SSQLQLHRYHTGRESRVVTALTL-------LKSHLFKYQGHVQAALVLGGVDATGPHLHT 152
++ +L+ R +R+++A L L S L ++ ++ L++GG + P L+
Sbjct: 70 RAEARLYEL---RHNRMISARALANMISHVLHSSLKAFRPYL-VQLIVGGFNDDDPALYN 125
Query: 153 IYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSN 212
+ P GS + GSGS A V E++Y EG++ ++ I + A+ S + D G+G
Sbjct: 126 LDPSGSIIEEDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTGEG 185
Query: 213 VDICVITK 220
V + IT+
Sbjct: 186 VTVVTITR 193
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 10/187 (5%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT VGL+ ++GV+L + RAT G+ + + +KI+ +A + AG D + + ++
Sbjct: 12 GTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLARLI 71
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHL-----FKYQGHVQAALVLGGVDATGPHLHTI- 153
S +++L+ + V TLL + L F Y VQ L++GGVD GP +++I
Sbjct: 72 SVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPY--FVQ--LLVGGVDKRGPSIYSID 127
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
G+ + + GSGS A V E +Y +T ++G+ L AI S + D SG +
Sbjct: 128 LLGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVDDGVELAVRAIYSAMRRDSASGDGI 187
Query: 214 DICVITK 220
D+ ITK
Sbjct: 188 DVVKITK 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,397,040
Number of Sequences: 539616
Number of extensions: 4330348
Number of successful extensions: 10874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 10174
Number of HSP's gapped (non-prelim): 566
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)