Query 023965
Match_columns 274
No_of_seqs 177 out of 1256
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173 20S proteasome, regula 100.0 7.2E-65 1.6E-69 432.0 23.7 266 5-273 3-269 (271)
2 cd03750 proteasome_alpha_type_ 100.0 5.7E-52 1.2E-56 363.3 23.7 212 14-232 6-223 (227)
3 COG0638 PRE1 20S proteasome, a 100.0 2.1E-51 4.6E-56 361.1 25.0 214 14-232 8-226 (236)
4 PTZ00246 proteasome subunit al 100.0 1.4E-50 2.9E-55 360.0 24.6 211 16-231 12-234 (253)
5 TIGR03633 arc_protsome_A prote 100.0 2.4E-50 5.3E-55 352.3 24.5 202 15-223 9-215 (224)
6 cd03752 proteasome_alpha_type_ 100.0 3.7E-50 8.1E-55 348.6 23.5 199 15-218 9-213 (213)
7 PRK03996 proteasome subunit al 100.0 5.1E-50 1.1E-54 353.9 24.1 215 10-231 6-232 (241)
8 cd03751 proteasome_alpha_type_ 100.0 4.5E-50 9.8E-55 347.8 23.1 197 16-218 11-212 (212)
9 KOG0176 20S proteasome, regula 100.0 1.1E-50 2.5E-55 334.1 17.9 215 11-232 10-235 (241)
10 cd03749 proteasome_alpha_type_ 100.0 2.1E-49 4.6E-54 343.5 23.0 198 14-219 6-211 (211)
11 cd03756 proteasome_alpha_arche 100.0 4.9E-49 1.1E-53 341.1 23.8 198 15-219 8-210 (211)
12 cd03755 proteasome_alpha_type_ 100.0 5E-49 1.1E-53 340.1 22.3 196 14-218 6-207 (207)
13 cd03753 proteasome_alpha_type_ 100.0 9.5E-49 2.1E-53 339.8 22.9 198 14-218 6-213 (213)
14 cd03754 proteasome_alpha_type_ 100.0 5.3E-48 1.2E-52 335.6 22.2 197 15-218 8-215 (215)
15 cd01911 proteasome_alpha prote 100.0 5.9E-48 1.3E-52 333.9 21.9 198 14-218 6-209 (209)
16 cd03763 proteasome_beta_type_7 100.0 1.3E-45 2.7E-50 314.6 26.0 189 41-229 1-189 (189)
17 cd03761 proteasome_beta_type_5 100.0 3.1E-45 6.7E-50 312.0 25.7 185 41-225 1-186 (188)
18 PTZ00488 Proteasome subunit be 100.0 2E-45 4.2E-50 325.1 24.7 210 14-233 23-233 (247)
19 cd03757 proteasome_beta_type_1 100.0 1.1E-44 2.4E-49 314.2 25.6 193 34-226 2-205 (212)
20 cd03758 proteasome_beta_type_2 100.0 1.2E-44 2.7E-49 309.5 25.4 186 41-226 2-191 (193)
21 cd03759 proteasome_beta_type_3 100.0 1.3E-44 2.9E-49 309.8 25.1 187 39-225 2-191 (195)
22 cd03760 proteasome_beta_type_4 100.0 1.2E-44 2.6E-49 310.5 24.9 190 39-228 1-197 (197)
23 TIGR03634 arc_protsome_B prote 100.0 1.7E-44 3.7E-49 306.4 25.1 184 40-223 1-185 (185)
24 cd03765 proteasome_beta_bacter 100.0 1.3E-44 2.9E-49 317.0 23.3 200 41-242 1-221 (236)
25 cd03762 proteasome_beta_type_6 100.0 5.7E-44 1.2E-48 304.0 25.5 185 41-225 1-186 (188)
26 cd03764 proteasome_beta_archea 100.0 1.2E-43 2.5E-48 302.1 25.7 186 41-226 1-187 (188)
27 TIGR03690 20S_bact_beta protea 100.0 1.2E-42 2.6E-47 302.8 24.3 195 39-233 1-209 (219)
28 cd01912 proteasome_beta protea 100.0 4.5E-42 9.7E-47 292.2 25.5 185 41-225 1-187 (189)
29 KOG0184 20S proteasome, regula 100.0 6.4E-43 1.4E-47 292.9 17.3 200 16-221 15-219 (254)
30 KOG0183 20S proteasome, regula 100.0 2.1E-43 4.6E-48 294.3 14.0 207 16-231 11-226 (249)
31 KOG0178 20S proteasome, regula 100.0 8.2E-43 1.8E-47 290.2 16.9 206 14-224 10-222 (249)
32 KOG0181 20S proteasome, regula 100.0 3.6E-43 7.7E-48 289.1 13.3 211 16-233 13-228 (233)
33 TIGR03691 20S_bact_alpha prote 100.0 3.5E-41 7.6E-46 294.7 22.0 194 25-231 17-224 (228)
34 cd01906 proteasome_protease_Hs 100.0 4.9E-40 1.1E-44 277.5 24.1 178 41-218 1-182 (182)
35 PF00227 Proteasome: Proteasom 100.0 4.2E-40 9.2E-45 279.7 22.9 182 37-218 1-190 (190)
36 KOG0174 20S proteasome, regula 100.0 2E-40 4.3E-45 272.7 16.9 192 34-225 13-205 (224)
37 KOG0863 20S proteasome, regula 100.0 5.1E-40 1.1E-44 276.7 18.4 205 16-228 13-226 (264)
38 KOG0182 20S proteasome, regula 100.0 4.1E-37 8.9E-42 256.3 18.6 215 10-231 5-235 (246)
39 KOG0175 20S proteasome, regula 100.0 4E-37 8.8E-42 262.9 16.5 195 37-231 68-263 (285)
40 KOG0177 20S proteasome, regula 100.0 2.1E-35 4.6E-40 242.4 18.2 192 41-232 2-197 (200)
41 KOG0179 20S proteasome, regula 100.0 5E-35 1.1E-39 243.5 20.0 210 13-225 5-227 (235)
42 PRK05456 ATP-dependent proteas 100.0 8.9E-35 1.9E-39 243.4 20.6 166 40-217 1-171 (172)
43 cd01913 protease_HslV Protease 100.0 2.3E-34 4.9E-39 239.6 20.6 165 41-217 1-170 (171)
44 KOG0185 20S proteasome, regula 100.0 1.7E-34 3.7E-39 244.0 18.8 237 1-239 1-248 (256)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 8.5E-34 1.8E-38 236.2 20.7 165 41-217 1-170 (171)
46 KOG0180 20S proteasome, regula 100.0 2.4E-30 5.2E-35 209.5 18.3 187 38-224 6-195 (204)
47 cd01901 Ntn_hydrolase The Ntn 100.0 2.3E-28 5E-33 200.2 21.9 160 41-200 1-163 (164)
48 COG3484 Predicted proteasome-t 99.8 2.3E-18 5.1E-23 143.5 13.1 202 41-245 2-225 (255)
49 COG5405 HslV ATP-dependent pro 99.6 1.2E-14 2.6E-19 117.4 14.0 169 39-219 3-176 (178)
50 PF10584 Proteasome_A_N: Prote 98.1 7.4E-07 1.6E-11 49.2 -0.1 15 14-28 6-20 (23)
51 PF12465 Pr_beta_C: Proteasome 97.4 9.9E-05 2.1E-09 46.1 1.8 27 232-260 1-28 (38)
52 PF09894 DUF2121: Uncharacteri 96.6 0.23 5E-06 42.1 15.5 50 172-221 131-180 (194)
53 COG4079 Uncharacterized protei 89.4 15 0.00032 32.6 15.3 50 173-222 133-182 (293)
54 KOG3361 Iron binding protein i 85.3 1.5 3.3E-05 35.0 4.3 44 151-194 71-114 (157)
55 PF08269 Cache_2: Cache domain 38.7 43 0.00094 24.5 3.4 52 173-229 18-73 (95)
56 PF07499 RuvA_C: RuvA, C-termi 35.6 28 0.0006 22.4 1.7 32 167-198 13-45 (47)
57 PRK09732 hypothetical protein; 32.7 1.1E+02 0.0024 24.4 5.1 35 184-222 5-39 (134)
58 PF03928 DUF336: Domain of unk 31.7 79 0.0017 24.8 4.1 36 184-223 1-36 (132)
59 COG3193 GlcG Uncharacterized p 30.6 1.3E+02 0.0028 24.5 5.0 36 183-222 5-40 (141)
60 cd04513 Glycosylasparaginase G 28.3 2.4E+02 0.0052 25.4 6.9 57 164-223 187-247 (263)
61 cd04512 Ntn_Asparaginase_2_lik 22.6 3.7E+02 0.0079 24.0 7.0 55 163-223 175-233 (248)
62 cd04702 ASRGL1_like ASRGL1_lik 21.3 3.7E+02 0.008 24.2 6.7 54 164-223 179-236 (261)
63 PF13522 GATase_6: Glutamine a 21.0 4.1E+02 0.0088 20.7 9.3 99 49-157 11-115 (133)
64 PF00538 Linker_histone: linke 20.2 1.8E+02 0.0038 20.5 3.8 39 168-206 21-59 (77)
No 1
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-65 Score=432.04 Aligned_cols=266 Identities=65% Similarity=1.046 Sum_probs=252.7
Q ss_pred CCCCCCCCCccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEE
Q 023965 5 NIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCC 84 (274)
Q Consensus 5 ~~~~~~~~g~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~ 84 (274)
..+.++++||+|+++.||.-++..|+ +++++.++||||+|++++||||+++|+|+|.|+++.+++|.|||.|.++|+||
T Consensus 3 ~~~~~~r~gfsf~nc~rn~~l~~~g~-k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~Iycc 81 (271)
T KOG0173|consen 3 SPDLPPRGGFSFDNCQRNAALLKKGL-KAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCC 81 (271)
T ss_pred CCCCCccCCCChhhhhhHHHHHhcCC-CCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEc
Confidence 34566799999999999988888887 89999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCe
Q 023965 85 GAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPF 164 (274)
Q Consensus 85 ~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~ 164 (274)
++|.++|...+.+++..++++|+++.+++++|..+.++|+|+||+|++++++.+|+||+|..|||||.+.|+|+....+|
T Consensus 82 GAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf 161 (271)
T KOG0173|consen 82 GAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPF 161 (271)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccCCCcc
Q 023965 165 ATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYS 244 (274)
Q Consensus 165 ~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~~~~~ 244 (274)
+++|||++.|+++||++|+|+|++|||++|+.+|+.+++.+|..||+|+++|||++.+++++++|..++.+. .|..+|+
T Consensus 162 ~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~-~r~~~y~ 240 (271)
T KOG0173|consen 162 TALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKG-ERTGRYK 240 (271)
T ss_pred eeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCc-cccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred cCc-eeeeeeeeeEeccceeEeeecCCCCC
Q 023965 245 FPK-KTEVLLTKITPLENQVEVIEVGDSME 273 (274)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (274)
|++ +|+||+++|+|+.+.++..+ .+.|+
T Consensus 241 ~~~gtT~VL~~~v~~l~~~~~~~~-~~~~~ 269 (271)
T KOG0173|consen 241 FKPGTTAVLKEKVYPLLVEVEIDE-VQVDE 269 (271)
T ss_pred eCCCceEEEeeeeeeeeeeeehhh-ccccC
Confidence 999 99999999999974433333 24444
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.7e-52 Score=363.30 Aligned_cols=212 Identities=19% Similarity=0.272 Sum_probs=200.1
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+||+||..+|++
T Consensus 6 t~fsp~Grl~QveyA-----~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 6 TTFSPSGKLVQIEYA-----LAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred ceECCCCeEhHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 359999999999999 9999999999999999999999999998 4788888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEe
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
.+.++++.+++.|++.++++++++.+++.|++.++.| .|||++++|+||||.+||+||++||+|++.+++++|+|
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G 159 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIG 159 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEC
Confidence 9999999999999999999999999999999988654 37999999999999889999999999999999999999
Q ss_pred cChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC-CEEEeccccCC
Q 023965 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLP 232 (274)
Q Consensus 169 sgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~-g~~~~~~~~~~ 232 (274)
+|+..++++||++|+++||++||++++++||..+..++. ++.+++|.+++++ |++.+.+.++.
T Consensus 160 ~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~ 223 (227)
T cd03750 160 KNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIK 223 (227)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHH
Confidence 999999999999999999999999999999999998875 7999999999995 78888777654
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=361.14 Aligned_cols=214 Identities=33% Similarity=0.426 Sum_probs=204.9
Q ss_pred ccccCcchhhHHHhcCCCCCCcccccc-ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTG-TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~G-ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~ 92 (274)
..|||+||++|+||+ .+++++| +|+|||+++||||||+|+|.++|.++..++.+|||+|+|||+|++||+.+|+
T Consensus 8 ~~fsp~g~l~q~e~a-----~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa 82 (236)
T COG0638 8 TIFSPEGRLFQVEYA-----LEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADA 82 (236)
T ss_pred eeECCCCchHHHHHH-----HHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhH
Confidence 559999999999999 7888875 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc---CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 93 EAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~---~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
+.++++++.+++.|++.++++++++.++++|++++++|+ |||++++|+||+|+++|+||++||+|++.+++++|+|+
T Consensus 83 ~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gs 162 (236)
T COG0638 83 QVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGS 162 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcC
Confidence 999999999999999999999999999999999999886 69999999999999779999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeC-CCEEEeccccCC
Q 023965 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK-GDKEYLRNHQLP 232 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k-~g~~~~~~~~~~ 232 (274)
|+..|+++||+.|+++|++|||++++++||..+++||..++++++|++|++ +|.+.+.+.++.
T Consensus 163 gs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~ 226 (236)
T COG0638 163 GSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIK 226 (236)
T ss_pred CcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHH
Confidence 999999999999999999999999999999999999998999999999999 788888877654
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.4e-50 Score=359.98 Aligned_cols=211 Identities=20% Similarity=0.330 Sum_probs=197.4
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|+|+|||+++||||||+|+|.+++.++..++.+|||+|+++|+||+||..+|++.+
T Consensus 12 fsp~Grl~QvEYA-----~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 86 (253)
T PTZ00246 12 FSPEGRLYQVEYA-----LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANIL 86 (253)
T ss_pred ECCCCEEhHHHHH-----HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHH
Confidence 9999999999999 99999999999999999999999999999888877789999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEec
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
.+.++.++..|++.++++++++.+++.++..++.| .|||++++|+||||+ .||+||.+||+|++.+++++|+|+
T Consensus 87 ~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~ 166 (253)
T PTZ00246 87 INQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQ 166 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECC
Confidence 99999999999999999999999999998876543 369999999999995 789999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC------EEEeccccC
Q 023965 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD------KEYLRNHQL 231 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g------~~~~~~~~~ 231 (274)
|+..++++||+.|+++|+++||++++++||..+..+|..++++++|++|+++| ++.+.+.++
T Consensus 167 gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei 234 (253)
T PTZ00246 167 NNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEI 234 (253)
T ss_pred CcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHH
Confidence 99999999999999999999999999999999999999999999999999985 455555544
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.4e-50 Score=352.28 Aligned_cols=202 Identities=29% Similarity=0.376 Sum_probs=193.0
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++|+|++||..+|++.
T Consensus 9 ~f~p~Grl~Qieya-----~~av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 82 (224)
T TIGR03633 9 VFSPDGRLYQVEYA-----REAVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARV 82 (224)
T ss_pred eECCCCeEeHHHHH-----HHHHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHH
Confidence 39999999999999 89999999999999999999999999984 6777789999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
+.++++.++..|++.++++++++.++++|++.++.| .|||++++||||+|++||+||.+||+|++.+++++|+|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~ 162 (224)
T TIGR03633 83 LIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGA 162 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECC
Confidence 999999999999999999999999999999988655 469999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
|+.+++++||+.|+++|+++||++++++||..+.+ |..++++++|++|+++|.
T Consensus 163 g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~ 215 (224)
T TIGR03633 163 GRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK 215 (224)
T ss_pred CCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC
Confidence 99999999999999999999999999999999887 888999999999999984
No 6
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-50 Score=348.62 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=189.6
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| .+|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|+|++||..+|++.
T Consensus 9 ~fsp~Grl~Qveya-----~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 83 (213)
T cd03752 9 IFSPEGRLYQVEYA-----MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANI 83 (213)
T ss_pred eECCCCEEhHHHhH-----HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHH
Confidence 39999999999999 8999999999999999999999999999988777779999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEe
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
+.++++.++..|++.++++++++.+++.|+..++.| .|||++++|+||||. .||+||.+||+|++.+++++|+|
T Consensus 84 l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G 163 (213)
T cd03752 84 LINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIG 163 (213)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEEC
Confidence 999999999999999999999999999998876543 379999999999995 78999999999999999999999
Q ss_pred cChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 169 sgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
+|+..++++||+.|+++||++||++++++||..+.+||..++.+++|.++
T Consensus 164 ~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 164 NNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999899999999875
No 7
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.1e-50 Score=353.93 Aligned_cols=215 Identities=27% Similarity=0.352 Sum_probs=198.4
Q ss_pred CCCCcc-----ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEE
Q 023965 10 PKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCC 84 (274)
Q Consensus 10 ~~~g~~-----fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~ 84 (274)
.+.||+ |||+||++||||| .+|+++|+|+|||+++||||||+|+|.++ .++..++.+||++|+++|+|+
T Consensus 6 ~~~~y~~~~~~fsp~Gr~~Q~eya-----~~av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~ 79 (241)
T PRK03996 6 QQMGYDRAITIFSPDGRLYQVEYA-----REAVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAA 79 (241)
T ss_pred cccccCCCCceECCCCeEhHHHHH-----HHHHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEE
Confidence 345666 8999999999999 89999999999999999999999999984 677778999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCe
Q 023965 85 GAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGST 159 (274)
Q Consensus 85 ~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~ 159 (274)
+||..+|++.+.++++.++..|++.++++++++.+++.|++.++.| .|||++++||||||.+||+||.+||+|++
T Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~ 159 (241)
T PRK03996 80 SAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAY 159 (241)
T ss_pred EcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCe
Confidence 9999999999999999999999999999999999999999988655 46999999999999989999999999999
Q ss_pred eeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC--EEEeccccC
Q 023965 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQL 231 (274)
Q Consensus 160 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g--~~~~~~~~~ 231 (274)
.+++++|+|+|+..++++||+.|+++|+++||++++++||..+.++ ..++++++|++|+++| .+.+.+.++
T Consensus 160 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei 232 (241)
T PRK03996 160 LEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEI 232 (241)
T ss_pred ecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHH
Confidence 9999999999999999999999999999999999999999999875 5679999999999987 555544443
No 8
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-50 Score=347.79 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=186.6
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++ .++..++.+|||+|++||+|++||..+|++.+
T Consensus 11 fsp~Grl~Qveya-----~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 84 (212)
T cd03751 11 FSPDGRVFQVEYA-----NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHL 84 (212)
T ss_pred ECCCCcchHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHH
Confidence 8999999999999 99999999999999999999999999986 66666789999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.++++.+++.|++.++++++++.++++|++.++.| .|||++++|+||+|++||+||++||+|++.+++++|+|+|
T Consensus 85 ~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g 164 (212)
T cd03751 85 VSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKG 164 (212)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECCC
Confidence 99999999999999999999999999999876544 4799999999999988999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
+..++++||+.|+++||++||+++++++|..+++.+...+.+|+|.++
T Consensus 165 ~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 165 KQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred CHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999877677899998874
No 9
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-50 Score=334.08 Aligned_cols=215 Identities=23% Similarity=0.333 Sum_probs=201.8
Q ss_pred CCCccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChh
Q 023965 11 KGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90 (274)
Q Consensus 11 ~~g~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~a 90 (274)
++=++|||+||++||||| .+|++.|+|.|||+.++|||||+++|.++ ++..++..+||++|++||+|++||+.+
T Consensus 10 rgVNTfSpEGRlfQVEYa-----ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 10 RGVNTFSPEGRLFQVEYA-----IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred ccccccCCCceeeehhhH-----HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeecccccc
Confidence 455779999999999999 99999999999999999999999999998 888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc----------cCcceeEEEEEEEeCCCCEEEEEcCCCCee
Q 023965 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPHGSTD 160 (274)
Q Consensus 91 D~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~----------~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~ 160 (274)
|++.++++.|.++++|++.|+++++++.+.+.+++.-.++ .|||||++|+||+|++||+||+.||+|++.
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFI 163 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceE
Confidence 9999999999999999999999999999999999876554 379999999999999999999999999999
Q ss_pred eeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC-CEEEeccccCC
Q 023965 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLP 232 (274)
Q Consensus 161 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~-g~~~~~~~~~~ 232 (274)
++++-|||||+.-|.+.|++.|+++|+++||.++++..|+..++.... ..|+++.++++. ++++..|.++.
T Consensus 164 ~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f~~~t~EE~~ 235 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEFHIYTPEEVE 235 (241)
T ss_pred EecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCceEecCHHHHH
Confidence 999999999999999999999999999999999999999999987654 689999999998 57887776653
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-49 Score=343.45 Aligned_cols=198 Identities=21% Similarity=0.215 Sum_probs=186.3
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
-.|||+||++||||| ++|+++|+|+|||+++||||||+|+|.+.+ + .++.+|||+|+++|+|++||..+|++
T Consensus 6 t~fsp~Grl~Qveya-----~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 6 TTWSPQGRLFQVEYA-----MEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred ceECCCCeEeHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHH
Confidence 359999999999999 899999999999999999999999998764 2 35679999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEe
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
.+.++++.++.+|+++++++++++.+++.++..++.| .|||++++|+||||++||+||.+||+|++.+++++|+|
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G 157 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIG 157 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEEC
Confidence 9999999999999999999999999999999877643 47999999999999889999999999999999999999
Q ss_pred cChHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhhhcCC-CCCCcEEEEEEe
Q 023965 169 SGSLAAMAVFESKYR--EGLTKEEGISLVCEAICSGIFNDL-GSGSNVDICVIT 219 (274)
Q Consensus 169 sgs~~a~~~Le~~~~--~~ms~eeai~la~~al~~~~~~d~-~sg~~i~i~vi~ 219 (274)
+|+..++++||++|+ ++|+++||+++++++|+.++.+|. .++.+|||++|+
T Consensus 158 ~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 158 ARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999998 699999999999999999999887 889999999984
No 11
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-49 Score=341.14 Aligned_cols=198 Identities=27% Similarity=0.388 Sum_probs=188.7
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|+.||..+|++.
T Consensus 8 ~fsp~G~l~Q~eya-----~~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 81 (211)
T cd03756 8 VFSPDGRLYQVEYA-----REAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARV 81 (211)
T ss_pred eECCCCeEhHHHHH-----HHHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 49999999999999 89999999999999999999999999984 6777789999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
+.++++.+++.|+++++++++++.+++.|++.++.| .|||++++|+||||++||+||.+||+|++.+++++|+|+
T Consensus 82 l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~ 161 (211)
T cd03756 82 LIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGS 161 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECC
Confidence 999999999999999999999999999999887654 369999999999999899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEe
Q 023965 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~ 219 (274)
|+..++++||+.|+++|+++||++++++||..+.+++. ++.+++|++|+
T Consensus 162 g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 162 GRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999999999999999998776 89999999986
No 12
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-49 Score=340.12 Aligned_cols=196 Identities=19% Similarity=0.273 Sum_probs=185.0
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|++||+|++||..+|++
T Consensus 6 ~~fsp~Gr~~Qveya-----~~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 6 TVFSPDGHLFQVEYA-----QEAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred ceECCCCeEeHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 459999999999999 89999999999999999999999999776 566677899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~ai 167 (274)
.+.++++.+++.|++.++++++++.+++.|++.++.| .|||++++|+||||+ +||+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 9999999999999999999999999999999988655 369999999999996 5899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
|+|+..++++||++|+++||++||++++++||..+++ .++.++||+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999986 67899999985
No 13
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-49 Score=339.77 Aligned_cols=198 Identities=24% Similarity=0.345 Sum_probs=187.0
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++|+|++||..+|++
T Consensus 6 ~~f~p~G~~~Q~eya-----~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 6 NTFSPEGRLFQVEYA-----IEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred ccCCCCCeEhHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 359999999999999 89999999999999999999999999986 566678899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc----------cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeC
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLP 163 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~----------~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~ 163 (274)
.+.+.++.+++.|++.++++++++.++++|++.+++| .|||++++|+||||++||+||.+||+|++.+++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~ 159 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCD 159 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeeccc
Confidence 9999999999999999999999999999999988764 279999999999999999999999999999999
Q ss_pred eEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 164 FATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 164 ~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
++|+|+|+..++++|+++|+++||++||++++++||+.+.+++ .++.+++|+++
T Consensus 160 ~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 160 AKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999999999999999999999999988765 67899999985
No 14
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-48 Score=335.56 Aligned_cols=197 Identities=17% Similarity=0.222 Sum_probs=182.7
Q ss_pred cccCcchhhHHHhcCCCCCCccccc-cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~-Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
.|||+||++||||| ++|+++ |+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++|+|++||+.+|++
T Consensus 8 ~fsp~Grl~Qveya-----~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 81 (215)
T cd03754 8 IFSPEGRLYQVEYA-----FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSR 81 (215)
T ss_pred eECCCCeEeHHHhH-----HHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHH
Confidence 49999999999999 899874 889999999999999999998874 45556889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~ai 167 (274)
.+.+++|.++..|+++++++++++.+++.+++.++.| .|||++++|+||+|+ +||+||++||+|++.+++++|+
T Consensus 82 ~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~ 161 (215)
T cd03754 82 SQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAA 161 (215)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEE
Confidence 9999999999999999999999999999999865432 369999999999996 6899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCC--C--CHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 168 GSGSLAAMAVFESKYREG--L--TKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~--m--s~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
|+|+..++++||+.|+++ | |++||++++++||..++++|.. +.+++|.++
T Consensus 162 G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 162 GVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 999999999999999985 7 9999999999999999999965 899999875
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=5.9e-48 Score=333.88 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=187.9
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++++++|+|+||++++||||||+|+|.+.+ ++..++.+|||+|+++++|++||..+|++
T Consensus 6 ~~f~~~G~~~q~eya-----~~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 6 TTFSPEGRLFQVEYA-----LEAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred ccCCCCCEEeHHHHH-----HHHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 359999999999999 899999999999999999999999999874 55668999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCC-CCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~-gp~Ly~idp~G~~~~~~~~ai 167 (274)
.+.+.++..+.+|++.++++++++.++++|++.++.| .||+++++||||+|.+ ||+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 9999999999999999999999999999999988654 3699999999999975 899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
|+|+..++++||+.|+++|+++||++++++||..+..+|. ++.+++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999998 9999999875
No 16
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-45 Score=314.58 Aligned_cols=189 Identities=76% Similarity=1.218 Sum_probs=184.8
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+|+||||||+|+|.++|.++..++.+|||+|+++++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~ 200 (274)
++|+++++.|+.|+++++|+||||++||+||.+||+|++.+++++|+|+|+..++++||++|+++||++||++++++||+
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~ 160 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIE 160 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 99999999998899999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcEEEEEEeCCCEEEeccc
Q 023965 201 SGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (274)
Q Consensus 201 ~~~~~d~~sg~~i~i~vi~k~g~~~~~~~ 229 (274)
.+.+||+.++++++|++|+++|++..+||
T Consensus 161 ~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 161 AGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 99999999999999999999999998886
No 17
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-45 Score=311.99 Aligned_cols=185 Identities=30% Similarity=0.412 Sum_probs=179.8
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (274)
Q Consensus 121 ~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al 199 (274)
+++++.++.++ .||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++.+||
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l 160 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999885 47999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 200 CSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 200 ~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
..+++||..++++++|++|+++|++.
T Consensus 161 ~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 161 YHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred HHHHHhcccCCCCeEEEEEcCCceEE
Confidence 99999999999999999999999864
No 18
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2e-45 Score=325.12 Aligned_cols=210 Identities=24% Similarity=0.368 Sum_probs=194.4
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
|+|.+--++.|+++ ++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++|++||..+|++
T Consensus 23 ~~~~~~~~~~~~~~----------~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~ 92 (247)
T PTZ00488 23 YTFDHGDANKAIEF----------AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCS 92 (247)
T ss_pred hhhccccCCccccc----------CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHH
Confidence 56666666665544 56999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhccC-cceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChH
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQG-HVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSL 172 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~-p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 172 (274)
.+.++++.+++.|++.++++++++.++++|++.++.++. |+.+++|+||||.+||+||.+||+|++.+++++|+|+|+.
T Consensus 93 ~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~ 172 (247)
T PTZ00488 93 FWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGST 172 (247)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHH
Confidence 999999999999999999999999999999999998842 3445589999999899999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCC
Q 023965 173 AAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPN 233 (274)
Q Consensus 173 ~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~ 233 (274)
+++++||+.|+++||++||++++++||+.+..||..++++++|++|+++|++.+.+.++..
T Consensus 173 ~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~ 233 (247)
T PTZ00488 173 YAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFD 233 (247)
T ss_pred HHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888776543
No 19
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-44 Score=314.17 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=183.3
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
.+.+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+||+||..+|++.+.++++.+++.|++.++++
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 46678999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcc-CcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcC--------
Q 023965 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYR-------- 183 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------- 183 (274)
++++.++++|++.++..+ +||++++|+||||. .+|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999998653 59999999999996 45999999999999999999999999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEe
Q 023965 184 -EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (274)
Q Consensus 184 -~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~ 226 (274)
++||++||++++++||+.+..||..++++++|++|+++|++..
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 8999999999999999999999999999999999999998644
No 20
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-44 Score=309.54 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=178.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||..+|++.+.++++.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 023965 121 TLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (274)
Q Consensus 121 ~~l~~~l~~~---~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~ 196 (274)
+++++.++.| +|||++++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 9999988644 369999999999996 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcEEEEEEeCCCEEEe
Q 023965 197 EAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (274)
Q Consensus 197 ~al~~~~~~d~~sg~~i~i~vi~k~g~~~~ 226 (274)
+|++.+.+||..++++++|++|+++|++.+
T Consensus 162 ~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 162 KCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999999999999999999998753
No 21
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-44 Score=309.82 Aligned_cols=187 Identities=22% Similarity=0.295 Sum_probs=178.3
Q ss_pred ccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHH
Q 023965 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (274)
Q Consensus 39 ~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~ 118 (274)
+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++||+|++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999988777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeC-eEEEecChHHHHHHHHhhcCCCCCHHHHHHHH
Q 023965 119 ALTLLKSHLFKY-QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (274)
Q Consensus 119 la~~l~~~l~~~-~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la 195 (274)
++++|++.++.. .+||++++|+||||. .||+||.+||+|++..+. ++|+|+|+..++++||+.|+++||++||++++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 999999998755 479999999999996 469999999999998877 99999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 196 CEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 196 ~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
++||+.+..||..++++++|++|+++|++.
T Consensus 162 ~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 191 (195)
T cd03759 162 SQALLSAVDRDALSGWGAVVYIITKDKVTT 191 (195)
T ss_pred HHHHHHHHhhCcccCCceEEEEEcCCcEEE
Confidence 999999999999999999999999999864
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-44 Score=310.49 Aligned_cols=190 Identities=25% Similarity=0.346 Sum_probs=179.9
Q ss_pred ccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHh-hhhhhcCCCCcHH
Q 023965 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQ-LHRYHTGRESRVV 117 (274)
Q Consensus 39 ~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~~~v~ 117 (274)
+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++|+|+++|..+|++.+++++|.++. .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 599999999999999999999998899999999999999999999999999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHhc---cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCC--CCCHHHH
Q 023965 118 TALTLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE--GLTKEEG 191 (274)
Q Consensus 118 ~la~~l~~~l~~~---~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea 191 (274)
.++++++++++.+ .|||++++|+||||+ +||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||++||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 9999999998754 379999999999997 789999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEecc
Q 023965 192 ISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRN 228 (274)
Q Consensus 192 i~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~ 228 (274)
++++++||+.+.+||..++++++|++|+++|++...|
T Consensus 161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 9999999999999999999999999999999876543
No 23
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.7e-44 Score=306.41 Aligned_cols=184 Identities=35% Similarity=0.524 Sum_probs=179.1
Q ss_pred cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 40 Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
|+|+|||+++||||||+|+|.+.|.++..++.+|||+|+++|+|++||..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 023965 120 LTLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (274)
Q Consensus 120 a~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~a 198 (274)
+++|++.++.++ +||++++|+||+|.+||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~ 160 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRA 160 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999999998764 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 199 ICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 199 l~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
|+.+.+||..++++++|++|+++|+
T Consensus 161 l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 161 IKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999984
No 24
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-44 Score=317.00 Aligned_cols=200 Identities=19% Similarity=0.273 Sum_probs=182.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEec----CcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCC-CCc
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMA----PNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR-ESR 115 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~----~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~-~~~ 115 (274)
|.+|||+++||||||+|+|.+.+.+. .++.+|||+|+ +||+||.||..+|++.+++++|.++++|++.+|+ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~-~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDN-ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcc-ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 57999999999999999999886444 44789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHh----cc-------CcceeEEEEEEEeC-CCCEEEEEcCCCCeeee----CeEEEecChHHHHHHHH
Q 023965 116 VVTALTLLKSHLFK----YQ-------GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTL----PFATMGSGSLAAMAVFE 179 (274)
Q Consensus 116 v~~la~~l~~~l~~----~~-------~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~----~~~aiGsgs~~a~~~Le 179 (274)
++.+++.+++.+++ +. |||+|++|+||||+ .||+||++||+|++.++ +|+|+|+ +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999998887543 33 69999999999994 78999999999999998 6799996 799999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccCCC
Q 023965 180 SKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKG 242 (274)
Q Consensus 180 ~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~~~ 242 (274)
++|+++||++||++++++||..++.||..+|++|+|++|+++|.+......++..++|-+...
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~ 221 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIR 221 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999888889988888744333
No 25
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.7e-44 Score=304.00 Aligned_cols=185 Identities=34% Similarity=0.556 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al 199 (274)
+++++.++.+++||++++|+||+|+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al 160 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 200 CSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 200 ~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
+.+..||+.++++++|++|+++|++.
T Consensus 161 ~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 161 SLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999863
No 26
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=302.11 Aligned_cols=186 Identities=35% Similarity=0.507 Sum_probs=180.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (274)
Q Consensus 121 ~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al 199 (274)
+++++.++.++ +||++++|+||+|.+||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+++||++++++||
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l 160 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999998764 79999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCcEEEEEEeCCCEEEe
Q 023965 200 CSGIFNDLGSGSNVDICVITKGDKEYL 226 (274)
Q Consensus 200 ~~~~~~d~~sg~~i~i~vi~k~g~~~~ 226 (274)
+.+.+||..++++++|++++++|++.+
T Consensus 161 ~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 161 KSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 999999999999999999999997765
No 27
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.2e-42 Score=302.76 Aligned_cols=195 Identities=21% Similarity=0.294 Sum_probs=181.1
Q ss_pred ccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHH
Q 023965 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (274)
Q Consensus 39 ~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~ 118 (274)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----cCcceeEEEEEEEeC--CCCEEEEEcCCCC-eeeeCeEEEecChHHHHHHHHhhcCCCCCHHHH
Q 023965 119 ALTLLKSHLFKY----QGHVQAALVLGGVDA--TGPHLHTIYPHGS-TDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191 (274)
Q Consensus 119 la~~l~~~l~~~----~~p~~v~lIvaG~D~--~gp~Ly~idp~G~-~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea 191 (274)
++++|++.++.+ .|||++++||||||. ++|+||++||+|+ +..++++|+|+|+..++++||+.|+++||++||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999888643 589999999999995 4699999999995 777899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCc-------EEEEEEeCCCEEEeccccCCC
Q 023965 192 ISLVCEAICSGIFNDLGSGSN-------VDICVITKGDKEYLRNHQLPN 233 (274)
Q Consensus 192 i~la~~al~~~~~~d~~sg~~-------i~i~vi~k~g~~~~~~~~~~~ 233 (274)
++++++||..+.++|..+++. ++|++|+++|++.+.+.++..
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~ 209 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEE 209 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHH
Confidence 999999999999999877664 399999999998887776543
No 28
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-42 Score=292.19 Aligned_cols=185 Identities=44% Similarity=0.631 Sum_probs=179.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-cceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQG-HVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (274)
Q Consensus 121 ~~l~~~l~~~~~-p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~a 198 (274)
+++++.++.+++ ||++++|+||+|+ ++|+||.+||+|++.+++++++|+++.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 999999998875 9999999999997 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 199 ICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 199 l~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
|..+.++|..++++++|++|+++|++.
T Consensus 161 l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 161 IDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 999999999999999999999999864
No 29
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-43 Score=292.86 Aligned_cols=200 Identities=18% Similarity=0.181 Sum_probs=186.2
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| +||+.+|+|||||+||||||+++++..++ ++.......|||.|++||+|+++|+.+|.+.+
T Consensus 15 fSpdGrvfQveYA-----~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l 88 (254)
T KOG0184|consen 15 FSPDGRVFQVEYA-----QKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHL 88 (254)
T ss_pred eCCCCceehHHHH-----HHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHH
Confidence 8899999999999 89999999999999999999999999998 66667788999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.+++|.++..|+.+|+.++|...++..+.+.++-| .||||++.++++||.+|||||.++|+|..+.++.+|+|.|
T Consensus 89 ~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKg 168 (254)
T KOG0184|consen 89 VNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKG 168 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccch
Confidence 99999999999999999999999999999987643 4899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG 221 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~ 221 (274)
.+.|++.||+.--.+|+.+|+++.+.+.|..+.+........+++.++...
T Consensus 169 rq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 169 RQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE 219 (254)
T ss_pred hHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence 999999999998889999999999999999887655555667888888663
No 30
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=294.30 Aligned_cols=207 Identities=20% Similarity=0.309 Sum_probs=193.8
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|+|.||++++|+|||+.+++... .+...+...||..+++|+++++||+.+|++.+
T Consensus 11 FSPDGhL~QVEYA-----qEAvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDAril 84 (249)
T KOG0183|consen 11 FSPDGHLFQVEYA-----QEAVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARIL 84 (249)
T ss_pred ECCCCCEEeeHhH-----HHHHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceee
Confidence 9999999999999 89999999999999999999999998775 77888889999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCC-CEEEEEcCCCCeeeeCeEEEec
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGs 169 (274)
++++|-+|+.|+++...+++++.+.++|++.-++| +||||++.|++|+|++| |+||+++|+|.+.+|.+.|+|.
T Consensus 85 inrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr 164 (249)
T KOG0183|consen 85 INRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGR 164 (249)
T ss_pred hhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcccccc
Confidence 99999999999999999999999999999887776 48999999999999977 9999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC-EEEeccccC
Q 023965 170 GSLAAMAVFESKYREG--LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQL 231 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~--ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~ 231 (274)
+++.+..+||++|.++ .+..++++|++++|......+ +.|+++.|++.++ .+++...++
T Consensus 165 ~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l~~~~I 226 (249)
T KOG0183|consen 165 SSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKMLESEEI 226 (249)
T ss_pred ccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeecCHHHH
Confidence 9999999999999876 789999999999999988755 6899999999987 777766544
No 31
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-43 Score=290.15 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=193.3
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++++.+.+|+|||.++||||||++++.++..+-.+...+||++|+|+|+|+.+|+.+|+.
T Consensus 10 tiFspEGRLyQVEyA-----meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAn 84 (249)
T KOG0178|consen 10 TIFSPEGRLYQVEYA-----MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDAN 84 (249)
T ss_pred cccCCCcchHHHHHH-----HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHH
Confidence 459999999999999 999999999999999999999999999986666677889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHH---hcc--CcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLF---KYQ--GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~---~~~--~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~ai 167 (274)
.|++.+|..++.|.+.+++++|++.+++.|++.-+ +|. ||||||+|.+|||+ .|.+||+.||||++..|++.|+
T Consensus 85 vL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ci 164 (249)
T KOG0178|consen 85 VLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCI 164 (249)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeee
Confidence 99999999999999999999999999999988765 553 79999999999998 6899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEE
Q 023965 168 GSGSLAAMAVFESKYREGLT-KEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKE 224 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~ms-~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~ 224 (274)
|.++..|+++|...|++++. ++||+.+|++.|..++..+..+...+++..++++..+
T Consensus 165 G~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k 222 (249)
T KOG0178|consen 165 GANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNK 222 (249)
T ss_pred ccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCc
Confidence 99999999999999998655 9999999999999999999889999999999998754
No 32
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-43 Score=289.12 Aligned_cols=211 Identities=19% Similarity=0.290 Sum_probs=200.5
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||.|++.|+||| ..|+++|.+.|||+..||||||++++..+ .+.......|++.|.++|+|..||..+|++.+
T Consensus 13 FSpsGKL~QieyA-----L~Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~Rvl 86 (233)
T KOG0181|consen 13 FSPSGKLVQIEYA-----LTAVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVL 86 (233)
T ss_pred EcCCCceehHHHH-----HHHHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeeh
Confidence 8999999999999 99999999999999999999999998876 78888899999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-----CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
++..|..++.|...|++++|+..+++.++..++.|. ||||+++++||||..+|.||++||+|+++.|+++|+|.+
T Consensus 87 V~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn 166 (233)
T KOG0181|consen 87 VHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKN 166 (233)
T ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccC
Confidence 999999999999999999999999999999998773 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCC
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPN 233 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~ 233 (274)
...++++||++|+++|.+++++..|+..|++..+... +..||||.++..++++.+.+-++..
T Consensus 167 ~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~eI~d 228 (233)
T KOG0181|consen 167 YVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAEIED 228 (233)
T ss_pred cchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHHHHH
Confidence 9999999999999999999999999999999997764 5799999999999999998877643
No 33
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=3.5e-41 Score=294.72 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=175.1
Q ss_pred HHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHh
Q 023965 25 LSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQ 104 (274)
Q Consensus 25 veya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~ 104 (274)
=||| ++|+++|+|+|||+++||||||+|++. ++.+|||+|+|||+||+||..+|++.+++.++.+++
T Consensus 17 ~EYA-----~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~ 83 (228)
T TIGR03691 17 AELA-----RKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYAD 83 (228)
T ss_pred HHHH-----HHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4898 899999999999999999999999972 357999999999999999999999999999999999
Q ss_pred hhhhhcC-CCCcHHHHHHHHHHHHHh----ccCcceeEEEEEEEeC--CCCEEEEEcCCCCeeeeC-eEEEecChHHHHH
Q 023965 105 LHRYHTG-RESRVVTALTLLKSHLFK----YQGHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMA 176 (274)
Q Consensus 105 ~~~~~~~-~~~~v~~la~~l~~~l~~----~~~p~~v~lIvaG~D~--~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~ 176 (274)
.|++.++ .+++++.+++.+++.+.. ..|||+|++|+||||+ +||+||.+||+|++.+++ ++|+|+|+..+++
T Consensus 84 ~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~ 163 (228)
T TIGR03691 84 MRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIAT 163 (228)
T ss_pred HHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHH
Confidence 9999998 689999999888887643 3589999999999984 689999999999999976 8999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhh--cCCCCCCcEEEEEEeCCC----EEEeccccC
Q 023965 177 VFESKYREGLTKEEGISLVCEAICSGIF--NDLGSGSNVDICVITKGD----KEYLRNHQL 231 (274)
Q Consensus 177 ~Le~~~~~~ms~eeai~la~~al~~~~~--~d~~sg~~i~i~vi~k~g----~~~~~~~~~ 231 (274)
+||++|+++||++||++++++||..+++ ++..++.+++|.++++++ ++.+.+.++
T Consensus 164 ~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei 224 (228)
T TIGR03691 164 ALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEAL 224 (228)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHH
Confidence 9999999999999999999999999954 667889999999999764 666655544
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.9e-40 Score=277.47 Aligned_cols=178 Identities=36% Similarity=0.542 Sum_probs=172.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+|||+++||||||+|+|.++|.....++.+|||+|+++|+|+++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---CcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ---GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (274)
Q Consensus 121 ~~l~~~l~~~~---~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~ 196 (274)
++|++.++.++ +|+++++|+||+|. +||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||+++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 99999998875 89999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcEEEEEE
Q 023965 197 EAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 197 ~al~~~~~~d~~sg~~i~i~vi 218 (274)
+||+.+.++|..++.+++|++|
T Consensus 161 ~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 161 KALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999989999999875
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4.2e-40 Score=279.69 Aligned_cols=182 Identities=31% Similarity=0.438 Sum_probs=168.7
Q ss_pred ccccceEEEEEeCCEEEEEEeCCCcCCceeeccC-cCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 023965 37 RKTGTTIVGLIFQNGVILGADTRATAGSIVCDKN-CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR 115 (274)
Q Consensus 37 ~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~-~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~ 115 (274)
+++|+|+|||+++||||||+|+|.+.|..+..++ .+|||+|++||+|++||..+|++.+.++++.++..|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4789999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----H-hccCcceeEEEEEEEeCCC-CEEEEEcCCCCeeee-CeEEEecChHHHHHHHHhhcCCCCCH
Q 023965 116 VVTALTLLKSHL----F-KYQGHVQAALVLGGVDATG-PHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTK 188 (274)
Q Consensus 116 v~~la~~l~~~l----~-~~~~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~~-~~~aiGsgs~~a~~~Le~~~~~~ms~ 188 (274)
++.+++.+++.+ + .+.+|+++++|+||+|+++ |+||.+||+|++.++ +++|+|+|+..++++||+.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 996666555443 3 3358999999999999866 999999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 189 EEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 189 eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
+||++++++||+.+.++|..++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999986
No 36
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=272.71 Aligned_cols=192 Identities=33% Similarity=0.534 Sum_probs=186.0
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
..-+.+|||++|+.|++||||++|+|.+.|.++.++-.+|+.+|.|+|+||-||.++|+|.+.++++.++..|...++++
T Consensus 13 ~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~ 92 (224)
T KOG0174|consen 13 KEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKP 92 (224)
T ss_pred ccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHH
Q 023965 114 SRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai 192 (274)
+.+..+++.+++.+|+|+..+.+.+||||||+ .|.++|.+--.|+..+.+++.-||||.+++++++.+|+++||+||++
T Consensus 93 p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~ 172 (224)
T KOG0174|consen 93 PLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECV 172 (224)
T ss_pred chHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHH
Confidence 99999999999999999988999999999997 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 193 SLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 193 ~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
+++.+|+..++.||-.||+.|.+.+|+++|+++
T Consensus 173 ~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver 205 (224)
T KOG0174|consen 173 RFVKNAVSLAIERDGSSGGVIRLVIINKAGVER 205 (224)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEEEccCCceE
Confidence 999999999999999999999999999999863
No 37
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-40 Score=276.73 Aligned_cols=205 Identities=24% Similarity=0.272 Sum_probs=189.2
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||.||++||||| ++|+++|++.||++.++..||+|-+|..+ .+ ++.+.||++|++|+++++||+.+|++.|
T Consensus 13 wsPqGrl~QvEya-----~EavkqGsatVGLks~thaVLvAl~r~~s-eL--ss~QkKi~~iD~h~g~siAGLt~Darvl 84 (264)
T KOG0863|consen 13 WSPQGRLHQVEYA-----MEAVKQGSATVGLKSRTHAVLVALKRAQS-EL--SSHQKKIFKIDDHIGISIAGLTADARVL 84 (264)
T ss_pred ECCcceehHHHHH-----HHHHhcccceEeecccceEEEeeeccchh-HH--HHhhheeEecccccceEEeccCcchHHH
Confidence 9999999999999 99999999999999999999999998876 22 4678999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHH----hc-cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLF----KY-QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~----~~-~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.++++.+|..+++.+++++++..++..|.+.++ .| +|||||.++++|+|+.|||||.++|+|++.+++.++||+.
T Consensus 85 ~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsR 164 (264)
T KOG0863|consen 85 SRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSR 164 (264)
T ss_pred HHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccc
Confidence 999999999999999999999999999888775 34 5899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhhhcC-CCCCCcEEEEEEeCCC-EEEecc
Q 023965 171 SLAAMAVFESKYR--EGLTKEEGISLVCEAICSGIFND-LGSGSNVDICVITKGD-KEYLRN 228 (274)
Q Consensus 171 s~~a~~~Le~~~~--~~ms~eeai~la~~al~~~~~~d-~~sg~~i~i~vi~k~g-~~~~~~ 228 (274)
|+.++++||++.. ++++.||.++.+++||+.+...| ...+.|+.|+|+.|+. +.+++.
T Consensus 165 SQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~ 226 (264)
T KOG0863|consen 165 SQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQ 226 (264)
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecH
Confidence 9999999999976 59999999999999999999855 7789999999999985 344443
No 38
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=256.30 Aligned_cols=215 Identities=20% Similarity=0.234 Sum_probs=197.3
Q ss_pred CCCCcc-----ccCcchhhHHHhcCCCCCCccccc-cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEE
Q 023965 10 PKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (274)
Q Consensus 10 ~~~g~~-----fs~~gr~~qveya~~~~~~~a~~~-Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~ 83 (274)
++.||| |||+||++||||| .||+++ |-|.||++++|++|+++.++.+. .++.++....+|+|+.+|+|
T Consensus 5 s~agfDrhitIFspeGrLyQVEYa-----fkAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~ 78 (246)
T KOG0182|consen 5 SSAGFDRHITIFSPEGRLYQVEYA-----FKAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGC 78 (246)
T ss_pred CcCCccceEEEECCCceEEeeehH-----HHHhhcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceE
Confidence 467898 9999999999999 799998 89999999999999999999887 77878889999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCC
Q 023965 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHG 157 (274)
Q Consensus 84 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G 157 (274)
+++|..+|++..++++|.++..+++.||.+||++.|++.+.+.-+.| .||+|+.+++.|+|+ .||.+|.+||.|
T Consensus 79 v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAG 158 (246)
T KOG0182|consen 79 VITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAG 158 (246)
T ss_pred EEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcc
Confidence 99999999999999999999999999999999999999988776544 589999999999997 689999999999
Q ss_pred CeeeeCeEEEecChHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC--EEEeccccC
Q 023965 158 STDTLPFATMGSGSLAAMAVFESKYREG--LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQL 231 (274)
Q Consensus 158 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~--ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g--~~~~~~~~~ 231 (274)
-+..+++++.|.....+.++||++|+++ .|.+|++++++.||..++.-|.. ...++|.+++++. ++++...++
T Consensus 159 yy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~~ei 235 (246)
T KOG0182|consen 159 YYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSAEEI 235 (246)
T ss_pred ccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccHHHH
Confidence 9999999999999999999999999987 67999999999999999988865 4889999999986 555554443
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-37 Score=262.87 Aligned_cols=195 Identities=28% Similarity=0.415 Sum_probs=187.6
Q ss_pred ccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcH
Q 023965 37 RKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV 116 (274)
Q Consensus 37 ~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v 116 (274)
..+|||.+|.+|+.|||+|+|+|++.|++|.+...+||.+|+++.+-++||-++|++..-+.+..+|.+|++++++-|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCc-ceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHH
Q 023965 117 VTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (274)
Q Consensus 117 ~~la~~l~~~l~~~~~p-~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la 195 (274)
..++++|++.+++|++. +.+..+++|||+.||.||.||..|+-.+.+-.++|||+.+|+++|++.|++|||.+||.+|+
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~ 227 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLA 227 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHH
Confidence 99999999999999874 77888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccC
Q 023965 196 CEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQL 231 (274)
Q Consensus 196 ~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~ 231 (274)
++||..|..||..||+.++++.|+.+|...+.+..+
T Consensus 228 rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv 263 (285)
T KOG0175|consen 228 RRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDV 263 (285)
T ss_pred HHHHHHHHhcccccCceEEEEEECCccceecCCccH
Confidence 999999999999999999999999999887776644
No 40
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=242.35 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=183.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
.+++||++.|.|++|||+....|-++..++.+|++.+++++.|+++|..+|+.+..+++++++++|+.++|.+++++.++
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 023965 121 TLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (274)
Q Consensus 121 ~~l~~~l~~~---~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~ 196 (274)
++.++.+..+ ++||.|++|+||+|+ .||.||++|..|+..+.+|++.|.|+.++.++|++.|+|+||.+||+++..
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 9999999765 469999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 197 EAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 197 ~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
+|+.+..+|-+....++.|.+|+|+|.+.++.....
T Consensus 162 KCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~~~ 197 (200)
T KOG0177|consen 162 KCVLELKKRLVINLPGFIVKIVDKDGIRKLDDINFI 197 (200)
T ss_pred HHHHHHHHhcccCCCCcEEEEEcCCCceeccccccc
Confidence 999999999998999999999999999887766543
No 41
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-35 Score=243.45 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=191.5
Q ss_pred CccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhH
Q 023965 13 GFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (274)
Q Consensus 13 g~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~ 92 (274)
|+.-.|.++..+.+-. .+.+...+|+|+|||++.|+.|+|+|+|.++|-.+.+++..|||+++|+++++.+|..+|+
T Consensus 5 g~~~~~~~~s~~~~~~---~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~ 81 (235)
T KOG0179|consen 5 GIESASGGSSKTMDHE---RFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADT 81 (235)
T ss_pred ceeecCCCccCccccc---cCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhH
Confidence 3444444666666666 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-CcceeEEEEEEEeCCC-CEEEEEcCCCCeeeeCeEEEecC
Q 023965 93 EAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsg 170 (274)
..|.+.++..+..|+..++++|++..+|++|+..||..+ -||.+..|+||+|++| +.+|+.||-|++.+..+.|.|++
T Consensus 82 l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa 161 (235)
T KOG0179|consen 82 LALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSA 161 (235)
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcc
Confidence 999999999999999999999999999999999998544 4889999999999977 89999999999999999999999
Q ss_pred hHHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 171 SLAAMAVFESKYR-----------EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 171 s~~a~~~Le~~~~-----------~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
+.+++++|++... +.+|+|+|++|+.+++..|.+||+.+|.+++|||++++|++.
T Consensus 162 ~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 162 ASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred hhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 9999999997642 468999999999999999999999999999999999999753
No 42
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=8.9e-35 Score=243.44 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=149.9
Q ss_pred cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEe-cCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHH
Q 023965 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (274)
Q Consensus 40 Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I-~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~ 118 (274)
|||+|||+++||||||+|+|++.|.++.+++.+||++| +++++||+||..+|+|.+.++++.++++|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 79999999999999999999999999999999999999 999999999999999999999999999998322 466
Q ss_pred HHHHHHHHH-HhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeee--CeEEEecChHHHHHHHHhhcC-CCCCHHHHHHH
Q 023965 119 ALTLLKSHL-FKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYR-EGLTKEEGISL 194 (274)
Q Consensus 119 la~~l~~~l-~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~--~~~aiGsgs~~a~~~Le~~~~-~~ms~eeai~l 194 (274)
++++++... ++|++|+.+++|++ | .|+||.+||.|++.+. +++++|||+.++.++||++|+ ++| ||+++
T Consensus 76 ~a~l~~~l~~~~~~~~l~~~~lv~--d--~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~l 148 (172)
T PRK05456 76 AVELAKDWRTDRYLRRLEAMLIVA--D--KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEI 148 (172)
T ss_pred HHHHHHHHHhccCCCccEEEEEEE--c--CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHH
Confidence 666664442 45667888999994 3 3799999999999776 899999999999999999999 999 99999
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEE
Q 023965 195 VCEAICSGIFNDLGSGSNVDICV 217 (274)
Q Consensus 195 a~~al~~~~~~d~~sg~~i~i~v 217 (274)
+++|++.+.+||..+|++|+|-.
T Consensus 149 a~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 149 AEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999999999864
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2.3e-34 Score=239.63 Aligned_cols=165 Identities=21% Similarity=0.212 Sum_probs=148.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecC-cEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAP-NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~-~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
||+|||+++||||||+|+|++.|.++.+++.+||++|++ ||+||+||..+|++.+.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999988764 45
Q ss_pred HHHHHHHH-HhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeee--CeEEEecChHHHHHHHHhhcCCC-CCHHHHHHHH
Q 023965 120 LTLLKSHL-FKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYREG-LTKEEGISLV 195 (274)
Q Consensus 120 a~~l~~~l-~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~--~~~aiGsgs~~a~~~Le~~~~~~-ms~eeai~la 195 (274)
+++++..+ ++|++++.+.+|++++ ++||.+||.|++.+. +++++||||.+|.++||.+|+++ || +.++|
T Consensus 76 a~l~~~l~~~~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la 148 (171)
T cd01913 76 VELAKDWRTDRYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIA 148 (171)
T ss_pred HHHHHHHHhccCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHH
Confidence 56655553 5666666687877644 499999999999998 49999999999999999999995 99 55999
Q ss_pred HHHHHHhhhcCCCCCCcEEEEE
Q 023965 196 CEAICSGIFNDLGSGSNVDICV 217 (274)
Q Consensus 196 ~~al~~~~~~d~~sg~~i~i~v 217 (274)
.+|++.+++||..+|++|+|-.
T Consensus 149 ~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 149 RKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHhhCcccCCCEEEEe
Confidence 9999999999999999999864
No 44
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=244.03 Aligned_cols=237 Identities=21% Similarity=0.310 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCCccccCcchhhHHHhcCC---CCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEe
Q 023965 1 MDNANIGIPPKGGFSFDLCRRNDMLSKKGI---VPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM 77 (274)
Q Consensus 1 ~~~~~~~~~~~~g~~fs~~gr~~qveya~~---~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I 77 (274)
|.+-+.-|....--+|.|.| .+++-++- ...+....+||++||++|+||||||||+..++|++...++.++++++
T Consensus 1 m~~~~~~~g~pa~~~f~~~~--~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kV 78 (256)
T KOG0185|consen 1 MNNYNSSWGGPAPGTFYPSG--SLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKV 78 (256)
T ss_pred CCccccccCCCCCCcCcCcc--chhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEe
Confidence 33444445543444577774 56666641 11356677999999999999999999999999999999999999999
Q ss_pred cCcEEEEecCChhhHHHHHHHHHHHHhhh-hhhcCCCCcHHHHHHHHHHHHHhcc---CcceeEEEEEEEeCCC-CEEEE
Q 023965 78 APNIYCCGAGTAADTEAVTDMVSSQLQLH-RYHTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDATG-PHLHT 152 (274)
Q Consensus 78 ~~~I~~~~sG~~aD~~~l~~~l~~~~~~~-~~~~~~~~~v~~la~~l~~~l~~~~---~p~~v~lIvaG~D~~g-p~Ly~ 152 (274)
+||+++++||..+|.|.+.+.+.+...+. .+..++.+.|+.++.+|.+.+|..+ .|+...++|||+|.+| |+|-.
T Consensus 79 gdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~ 158 (256)
T KOG0185|consen 79 GDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGY 158 (256)
T ss_pred cCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEE
Confidence 99999999999999999999998887654 4677799999999999999998654 6999999999999865 99999
Q ss_pred EcCCCCeeeeCeEEEecChHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccc
Q 023965 153 IYPHGSTDTLPFATMGSGSLAAMAVFESKYR---EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (274)
Q Consensus 153 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~---~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~ 229 (274)
+|-.|...+.+.+|+|.|...|.++|++.|. ++++.+||..++.+||+....||+.+-+.++|.+|+++|+++..|+
T Consensus 159 V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~ 238 (256)
T KOG0185|consen 159 VDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPY 238 (256)
T ss_pred EeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCce
Confidence 9999999999999999999999999999997 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccc
Q 023965 230 QLPNPRTYIS 239 (274)
Q Consensus 230 ~~~~~~~~~~ 239 (274)
++..+|.|+.
T Consensus 239 qv~~~W~fa~ 248 (256)
T KOG0185|consen 239 QVKTNWDFAE 248 (256)
T ss_pred eeeecchhhh
Confidence 9999999865
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=8.5e-34 Score=236.19 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=149.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEe-cCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I-~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
||+|||+++||||||+|+|++.|.++.+++.+||++| ++||+||+||..+|++.+.++++.++++|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 7999999999999999999999999999999999999 599999999999999999999999999998743 4777
Q ss_pred HHHHHHH-HHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeee--CeEEEecChHHHHHHHHhhc-CCCCCHHHHHHHH
Q 023965 120 LTLLKSH-LFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKY-REGLTKEEGISLV 195 (274)
Q Consensus 120 a~~l~~~-l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~--~~~aiGsgs~~a~~~Le~~~-~~~ms~eeai~la 195 (274)
++++++. .++|.+.+.+.+|++|+ ++||.+||.|++.+. +++++||||.+|.++||..| +++|+ |+++|
T Consensus 76 a~l~~~~~~~~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la 148 (171)
T TIGR03692 76 VELAKDWRTDRYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIA 148 (171)
T ss_pred HHHHHHHhhcccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHH
Confidence 8888875 35666667788888644 499999999999996 69999999999999999999 57888 99999
Q ss_pred HHHHHHhhhcCCCCCCcEEEEE
Q 023965 196 CEAICSGIFNDLGSGSNVDICV 217 (274)
Q Consensus 196 ~~al~~~~~~d~~sg~~i~i~v 217 (274)
.+|++.+++||..+|++|+|-.
T Consensus 149 ~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 149 REALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHhhCccCCCCEEEEe
Confidence 9999999999999999999864
No 46
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=209.54 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=177.7
Q ss_pred cccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHH
Q 023965 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVV 117 (274)
Q Consensus 38 ~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~ 117 (274)
-+|+++||+++|+||.||+|.|.....+....+.+|||+++|+++++.+|++.|+|.+.++++....+|+++.++++.++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47999999999999999999999877777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-CcceeEEEEEEEeCC-CCEEEEEcCCCCeee-eCeEEEecChHHHHHHHHhhcCCCCCHHHHHHH
Q 023965 118 TALTLLKSHLFKYQ-GHVQAALVLGGVDAT-GPHLHTIYPHGSTDT-LPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (274)
Q Consensus 118 ~la~~l~~~l~~~~-~p~~v~lIvaG~D~~-gp~Ly~idp~G~~~~-~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~l 194 (274)
.++++++..+|+.+ +||.+..+|||+|++ .|+|...|..|.... .+|++.|.++...+++.|..|+|||..|+..+.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFet 165 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFET 165 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999998765 899999999999985 499999999999775 689999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEEeCCCEE
Q 023965 195 VCEAICSGIFNDLGSGSNVDICVITKGDKE 224 (274)
Q Consensus 195 a~~al~~~~~~d~~sg~~i~i~vi~k~g~~ 224 (274)
+..||..+.+||+.||+...+.+|+|+.+.
T Consensus 166 isQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 166 ISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 999999999999999999999999999754
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=2.3e-28 Score=200.15 Aligned_cols=160 Identities=30% Similarity=0.332 Sum_probs=153.4
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
+|+||++++||||+|+|++.+.+......+..|+++++++++|+++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998877678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--CcceeEEEEEEEeCCCCEEEEEcCCCCeeee-CeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ--GHVQAALVLGGVDATGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCE 197 (274)
Q Consensus 121 ~~l~~~l~~~~--~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~-~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~ 197 (274)
+.+++.++.++ +|+++++|+||+|.++|+||.+||+|++.+. .++++|+++..+.++|++.|+++|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALK 160 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999998764 8999999999999988999999999999999 99999999999999999999999999999999999
Q ss_pred HHH
Q 023965 198 AIC 200 (274)
Q Consensus 198 al~ 200 (274)
+|.
T Consensus 161 ~l~ 163 (164)
T cd01901 161 ALK 163 (164)
T ss_pred HHh
Confidence 986
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.3e-18 Score=143.49 Aligned_cols=202 Identities=21% Similarity=0.306 Sum_probs=160.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCc-eeeccCcCeeE---EecCcEEE-EecCChhhHHHHHHHHHHHHhhhhh-hcCCCC
Q 023965 41 TTIVGLIFQNGVILGADTRATAGS-IVCDKNCEKIH---YMAPNIYC-CGAGTAADTEAVTDMVSSQLQLHRY-HTGRES 114 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~-~i~~~~~~KI~---~I~~~I~~-~~sG~~aD~~~l~~~l~~~~~~~~~-~~~~~~ 114 (274)
|.|||++...|.|+++|+|.+.|. .+ ....|+| .-++++.+ +.+|..+-.|.+.+.+.+..+...- ..-.-+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~i--stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYI--STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHH--HHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 789999999999999999999882 12 1234443 33566655 4499999999999999887752211 111234
Q ss_pred cHHHHHHHHHHHHHhc-----------cCcceeEEEEEEEeCCC-CEEEEEcCCCCeee----eCeEEEecChHHHHHHH
Q 023965 115 RVVTALTLLKSHLFKY-----------QGHVQAALVLGGVDATG-PHLHTIYPHGSTDT----LPFATMGSGSLAAMAVF 178 (274)
Q Consensus 115 ~v~~la~~l~~~l~~~-----------~~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~----~~~~aiGsgs~~a~~~L 178 (274)
+.-.++.++.....+- .-.|.|++|+||.-.++ |.||.|.|.|++++ .+|..+|. +.+.+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 5556666666555321 12489999999998755 78999999999987 68999996 67899999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccCCCccc
Q 023965 179 ESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSF 245 (274)
Q Consensus 179 e~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~ 245 (274)
++.+..+++++|+.++++-++...++.+.+.|-++++.++.+|.......+++.+..+|.+...=.|
T Consensus 159 dR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W 225 (255)
T COG3484 159 DRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLW 225 (255)
T ss_pred hhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEeccCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999854444333
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.2e-14 Score=117.43 Aligned_cols=169 Identities=19% Similarity=0.195 Sum_probs=138.1
Q ss_pred ccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecC-cEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHH
Q 023965 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAP-NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVV 117 (274)
Q Consensus 39 ~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~-~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~ 117 (274)
++|||++++-++-|+||+|...|.|+.+...+..|+.+|.. .++.+++|..+|+..|.+++..+++.|.-+ -.+
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~-----L~r 77 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD-----LFR 77 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc-----HHH
Confidence 68999999999999999999999999999999888888876 889999999999999999999999887622 123
Q ss_pred HHHHHHHHHHH-hccCcceeEEEEEEEeCCCCEEEEEcCCCCeee--eCeEEEecChHHHHHHHHhhcC-CCCCHHHHHH
Q 023965 118 TALTLLKSHLF-KYQGHVQAALVLGGVDATGPHLHTIYPHGSTDT--LPFATMGSGSLAAMAVFESKYR-EGLTKEEGIS 193 (274)
Q Consensus 118 ~la~~l~~~l~-~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~--~~~~aiGsgs~~a~~~Le~~~~-~~ms~eeai~ 193 (274)
.++.+.++... +|.|.+.+.+||+ +.-++|-+...|...+ ..+.+||||..+|.+.....++ +++| |.+
T Consensus 78 aavelaKdwr~Dk~lr~LEAmllVa----d~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~e 150 (178)
T COG5405 78 AAVELAKDWRTDKYLRKLEAMLLVA----DKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---ARE 150 (178)
T ss_pred HHHHHHHhhhhhhHHHHHhhheeEe----CCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHH
Confidence 44444444332 3456677888886 4468999999998876 4599999999999999888885 3777 778
Q ss_pred HHHHHHHHhhhcCCCCCCcEEEEEEe
Q 023965 194 LVCEAICSGIFNDLGSGSNVDICVIT 219 (274)
Q Consensus 194 la~~al~~~~~~d~~sg~~i~i~vi~ 219 (274)
++.++|..+.+-+.+++.||.|-.+.
T Consensus 151 Ia~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 151 IAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHhhhheEEEecCCcEEEEEee
Confidence 89999999888888888888876654
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.07 E-value=7.4e-07 Score=49.15 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=13.8
Q ss_pred ccccCcchhhHHHhc
Q 023965 14 FSFDLCRRNDMLSKK 28 (274)
Q Consensus 14 ~~fs~~gr~~qveya 28 (274)
-.|||+||++|||||
T Consensus 6 t~FSp~Grl~QVEYA 20 (23)
T PF10584_consen 6 TTFSPDGRLFQVEYA 20 (23)
T ss_dssp TSBBTTSSBHHHHHH
T ss_pred eeECCCCeEEeeEee
Confidence 359999999999998
No 51
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=97.38 E-value=9.9e-05 Score=46.13 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=11.3
Q ss_pred CCCCCcccCCCcccCc-eeeeeeeeeEecc
Q 023965 232 PNPRTYISSKGYSFPK-KTEVLLTKITPLE 260 (274)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 260 (274)
|+.+. .|++.|+|++ +|+||+|+| ++.
T Consensus 1 pN~kg-~r~~~Ykf~~GTTaVL~e~V-~~~ 28 (38)
T PF12465_consen 1 PNEKG-ERQGSYKFKRGTTAVLKEKV-PLK 28 (38)
T ss_dssp TT------SS-----TT-S-EEEEEE-E--
T ss_pred CCcCc-ccccccccCCCceeeEEEEe-ccE
Confidence 35566 7899999999 999999999 553
No 52
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.57 E-value=0.23 Score=42.11 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC
Q 023965 172 LAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG 221 (274)
Q Consensus 172 ~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~ 221 (274)
+.|...|.++|++.|+++++.++..++|+.+....+.....+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 44667788999999999999999999999998777777889999887665
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.39 E-value=15 Score=32.57 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC
Q 023965 173 AAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (274)
Q Consensus 173 ~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g 222 (274)
.+..+|.++|.+.++++++.++...+|+.+...-+..+..+++...+++-
T Consensus 133 ~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~ 182 (293)
T COG4079 133 VANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNV 182 (293)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCc
Confidence 35667889999999999999999999998887777778899999887753
No 54
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=85.28 E-value=1.5 Score=34.96 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=40.3
Q ss_pred EEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHH
Q 023965 151 HTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (274)
Q Consensus 151 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~l 194 (274)
..+|-+|.+.+.+|-..|-||..|-+-+-..|-..+|+|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46788999999999999999999999999999999999998764
No 55
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=38.67 E-value=43 Score=24.46 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHhhcC----CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccc
Q 023965 173 AAMAVFESKYR----EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (274)
Q Consensus 173 ~a~~~Le~~~~----~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~ 229 (274)
.+.++++..+. -.+|.+||.+.++.+|..... ++.=-+++++.+|+-+..|.
T Consensus 18 ~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 18 SAISLIESYYAQAQAGKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp HHHHHTHHHHHC-STT-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEESS
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcCC
Confidence 34455555443 369999999999999986543 23447889999998888776
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.56 E-value=28 Score=22.36 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred EecChHHHHHHHHhhc-CCCCCHHHHHHHHHHH
Q 023965 167 MGSGSLAAMAVFESKY-REGLTKEEGISLVCEA 198 (274)
Q Consensus 167 iGsgs~~a~~~Le~~~-~~~ms~eeai~la~~a 198 (274)
.|.....+...+.+.. .++++.++.++.+++.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 4667777788877777 8899999988877653
No 57
>PRK09732 hypothetical protein; Provisional
Probab=32.69 E-value=1.1e+02 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC
Q 023965 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (274)
Q Consensus 184 ~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g 222 (274)
+.||++.|.+++..++..+.+. +.++.|+|++..|
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 4699999999999999988764 5689999999998
No 58
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=31.71 E-value=79 Score=24.82 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 184 ~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
|.+|+++|.+++..+++.+.++. .++-|+|++..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCC
Confidence 35789999999999999988653 4589999999984
No 59
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=30.60 E-value=1.3e+02 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC
Q 023965 183 REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (274)
Q Consensus 183 ~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g 222 (274)
.+.+|+++|.+++..++.++... +.++.+.|++..|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCC
Confidence 36789999999999999988753 6899999999998
No 60
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=28.32 E-value=2.4e+02 Score=25.35 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=41.5
Q ss_pred eEEEecChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 164 FATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 164 ~~aiGsgs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
..++|.|..+++..+-.. .+..|+++||.+.+++-+..... ..+...-+..++++|.
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 568999998888775533 34689999999988877764432 2355677888898873
No 61
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=22.63 E-value=3.7e+02 Score=23.96 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=39.8
Q ss_pred CeEEEecChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 163 PFATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 163 ~~~aiGsgs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
-..++|.|...++..|-.. .+..+++++|.+.+++-+... .+...-+..++++|.
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 3678899999888776543 356899999998877776543 234456778888873
No 62
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=21.29 E-value=3.7e+02 Score=24.16 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.2
Q ss_pred eEEEecChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE
Q 023965 164 FATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (274)
Q Consensus 164 ~~aiGsgs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~ 223 (274)
..++|.|..+++..+-.. .+..++++||.+.++.-+.... +...-+..++++|.
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 678999999888776543 4568999999998887765432 34456777888873
No 63
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=21.01 E-value=4.1e+02 Score=20.69 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=54.5
Q ss_pred CCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHH----
Q 023965 49 QNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLK---- 124 (274)
Q Consensus 49 ~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~---- 124 (274)
++.++|+--+.+|.|......+ +-+..-..++.++.-|.......|.+.+.. ...........+.++.++.
T Consensus 11 ~~~~~lgH~R~AT~G~~~~~~~-hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~----~g~~~~~~tDSEii~~li~~~g~ 85 (133)
T PF13522_consen 11 DGEAALGHTRYATVGSPTEENN-HPFSNRDGRIALAHNGNIDNYKELREELGE----KGHPFESDTDSEIIAALIHRWGE 85 (133)
T ss_pred CCCEEEEEeecCCCCCCCCcCC-CCCcCCCCCEEEEECCeecCHHHHHHHHHH----CCCcccCCCHHHHHHHHHHHHHH
Confidence 4447777767777775433333 333334567889999999988877766654 1122223445566666663
Q ss_pred HHHHhccCcceeEEEEEEEeC--CCCEEEEEcCCC
Q 023965 125 SHLFKYQGHVQAALVLGGVDA--TGPHLHTIYPHG 157 (274)
Q Consensus 125 ~~l~~~~~p~~v~lIvaG~D~--~gp~Ly~idp~G 157 (274)
+.+....+.+.+.+ ++. ++-.++ .||.|
T Consensus 86 ~~l~~l~G~~a~~~----~~~~~~~l~~~-rd~~g 115 (133)
T PF13522_consen 86 EALERLDGAFAFAV----YDKTPNKLFLA-RDPLG 115 (133)
T ss_pred HHHHHhcCceEEEE----EEcCCCEEEEE-EcCCC
Confidence 12223344444333 333 223333 68877
No 64
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=20.24 E-value=1.8e+02 Score=20.54 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=30.7
Q ss_pred ecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcC
Q 023965 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFND 206 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d 206 (274)
|+....+..+++..|.-+.+.........++|+.+....
T Consensus 21 GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 21 GSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 666788999999999766776567778888888887654
Done!