Query 023965
Match_columns 274
No_of_seqs 177 out of 1256
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_H Proteasome component PU 100.0 2.1E-61 7.1E-66 429.4 29.0 252 11-264 1-254 (261)
2 3unf_H Proteasome subunit beta 100.0 2.5E-57 8.7E-62 397.4 29.2 232 41-274 1-233 (234)
3 1iru_I 20S proteasome; cell cy 100.0 9.1E-55 3.1E-59 381.4 26.3 232 41-274 1-233 (234)
4 1ryp_I 20S proteasome; multica 100.0 5.1E-53 1.7E-57 367.5 28.5 219 41-260 1-221 (222)
5 1iru_B 20S proteasome; cell cy 100.0 8E-54 2.7E-58 374.9 23.3 210 16-232 12-226 (233)
6 1yar_A Proteasome alpha subuni 100.0 1.3E-53 4.4E-58 373.6 23.3 213 12-231 6-229 (233)
7 1ryp_A 20S proteasome; multica 100.0 1.7E-53 5.8E-58 375.2 22.1 211 15-232 9-233 (243)
8 1iru_E 20S proteasome; cell cy 100.0 7.6E-53 2.6E-57 370.6 22.8 208 16-230 15-233 (241)
9 1ryp_G 20S proteasome; multica 100.0 1.4E-52 4.9E-57 369.6 24.1 211 15-231 10-231 (244)
10 1iru_C 20S proteasome; cell cy 100.0 1.3E-52 4.5E-57 373.2 23.1 212 15-231 11-233 (261)
11 1ryp_C 20S proteasome; multica 100.0 2E-52 6.8E-57 368.5 23.6 211 15-230 11-233 (244)
12 1ryp_E 20S proteasome; multica 100.0 1.7E-52 5.8E-57 368.5 22.6 211 14-231 5-228 (242)
13 3h4p_A Proteasome subunit alph 100.0 9.4E-53 3.2E-57 374.6 19.9 216 10-233 8-235 (264)
14 1ryp_D 20S proteasome; multica 100.0 6.8E-52 2.3E-56 364.5 24.5 211 14-232 7-228 (241)
15 1ryp_F 20S proteasome; multica 100.0 4.9E-52 1.7E-56 363.7 22.8 209 15-232 11-230 (233)
16 1iru_A 20S proteasome; cell cy 100.0 5.3E-52 1.8E-56 366.2 23.0 209 16-231 16-235 (246)
17 1iru_G 20S proteasome; cell cy 100.0 2.5E-52 8.5E-57 370.1 20.7 211 16-232 14-233 (254)
18 1iru_F 20S proteasome; cell cy 100.0 1.1E-51 3.8E-56 367.6 23.4 210 16-233 13-231 (263)
19 1j2p_A Alpha-ring, proteasome 100.0 2.2E-51 7.5E-56 362.3 24.6 209 16-232 15-230 (246)
20 3nzj_F Proteasome component C1 100.0 1.3E-51 4.4E-56 371.0 22.7 204 11-220 5-221 (288)
21 1iru_D 20S proteasome; cell cy 100.0 1.3E-51 4.4E-56 364.3 20.1 210 14-232 8-226 (248)
22 1ryp_B 20S proteasome; multica 100.0 1.3E-50 4.4E-55 358.2 24.6 201 15-222 11-218 (250)
23 1iru_N 20S proteasome; cell cy 100.0 1.8E-48 6.3E-53 337.9 23.9 207 34-240 2-214 (219)
24 1ryp_N 20S proteasome; multica 100.0 1.5E-47 5.1E-52 335.2 23.0 206 34-239 2-223 (233)
25 1yar_H Proteasome beta subunit 100.0 4.5E-47 1.5E-51 328.9 24.2 198 34-232 2-201 (217)
26 1j2q_H Proteasome beta subunit 100.0 4.1E-46 1.4E-50 319.2 24.7 192 41-232 1-194 (202)
27 1ryp_H 20S proteasome; multica 100.0 4.9E-46 1.7E-50 319.5 24.9 192 34-226 3-195 (205)
28 1g0u_M Proteasome component PR 100.0 1.8E-46 6.3E-51 334.5 22.5 207 33-239 34-256 (266)
29 3h4p_a Proteasome subunit beta 100.0 1.8E-46 6.1E-51 325.6 21.6 193 40-232 1-196 (219)
30 1q5q_A Proteasome alpha-type s 100.0 2E-46 6.9E-51 333.0 21.1 206 14-233 5-230 (259)
31 1iru_M 20S proteasome; cell cy 100.0 2.5E-45 8.5E-50 316.8 26.8 192 34-225 3-205 (213)
32 3nzj_K Proteasome component PR 100.0 8.8E-46 3E-50 332.8 23.9 204 34-237 69-275 (287)
33 1iru_L 20S proteasome; cell cy 100.0 2.3E-45 7.8E-50 315.0 24.8 192 41-232 1-193 (204)
34 1ryp_K 20S proteasome; multica 100.0 1.6E-45 5.6E-50 314.4 23.6 191 40-230 1-196 (198)
35 1ryp_M 20S proteasome; multica 100.0 6E-45 2.1E-49 316.6 26.2 193 33-225 2-214 (222)
36 1iru_H 20S proteasome; cell cy 100.0 5.4E-45 1.8E-49 312.9 25.5 195 41-235 1-198 (205)
37 1ryp_L 20S proteasome; multica 100.0 5.5E-45 1.9E-49 314.5 24.6 194 41-234 1-196 (212)
38 1iru_K 20S proteasome; cell cy 100.0 9.7E-45 3.3E-49 310.4 24.1 191 40-230 1-195 (201)
39 1iru_J 20S proteasome; cell cy 100.0 2.5E-44 8.6E-49 308.8 25.5 191 35-225 3-197 (205)
40 1ryp_J 20S proteasome; multica 100.0 6.9E-44 2.3E-48 305.8 26.3 190 35-225 3-196 (204)
41 3unf_N Proteasome subunit beta 100.0 3.8E-44 1.3E-48 306.2 23.9 194 41-236 1-198 (199)
42 2jay_A Proteasome; hydrolase; 100.0 1.2E-44 4.1E-49 326.2 21.2 219 8-232 17-268 (291)
43 3mi0_A Proteasome subunit alph 100.0 4.3E-44 1.5E-48 315.8 23.0 204 14-231 5-230 (248)
44 1q5r_H Proteasome beta-type su 100.0 5.7E-44 1.9E-48 322.1 23.3 199 33-231 58-275 (294)
45 1q5q_H Proteasome beta-type su 100.0 1.5E-42 5E-47 304.0 23.7 192 41-232 1-211 (235)
46 2z3b_A ATP-dependent protease 100.0 1.4E-36 4.8E-41 255.8 20.4 168 38-218 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 7.4E-36 2.5E-40 249.2 20.4 165 41-218 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1.6E-35 5.6E-40 247.9 20.8 166 41-219 1-173 (174)
49 3ub6_A Chemoreceptor TLPB; hom 27.5 1.2E+02 0.0041 24.0 5.9 52 173-229 35-86 (181)
50 3fpw_A HBPS, extracellular HAE 21.5 1.4E+02 0.0048 24.3 5.2 36 183-222 62-97 (192)
No 1
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.1e-61 Score=429.43 Aligned_cols=252 Identities=54% Similarity=0.870 Sum_probs=216.3
Q ss_pred CCCccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChh
Q 023965 11 KGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90 (274)
Q Consensus 11 ~~g~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~a 90 (274)
++||+|+|+.||.+|+..|+ .+++|+++|+|+|||+++||||||+|+|.++|.++.+++++|||+|++||+|++||..+
T Consensus 1 ~~~~~~~~~~rn~~~~~~~~-~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~a 79 (261)
T 3nzj_H 1 MAGLSFDNYQRNNFLAENSH-TQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAA 79 (261)
T ss_dssp ------------------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHH
T ss_pred CCCcCchhhhhHHHHHhcCC-CCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHH
Confidence 47999999999999998887 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 91 D~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
|++.+.++++.+++.|+++++++++++.+++++++.+++|++||++++||||||++||+||.+||+|++.+++++|+|+|
T Consensus 80 D~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsg 159 (261)
T 3nzj_H 80 DTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTT
T ss_pred HHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC-EEEeccccCCCCCCcccCCCcccCc-e
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTYISSKGYSFPK-K 248 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~ 248 (274)
+..++++||+.|+++||++||++++++||..++.+|..++++++|++|+++| +++++||.+++.|.+ ++..|+||+ +
T Consensus 160 s~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 238 (261)
T 3nzj_H 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGT 238 (261)
T ss_dssp HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTC
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccc-cccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999995 999999999 9
Q ss_pred eeeeeeeeEeccceeE
Q 023965 249 TEVLLTKITPLENQVE 264 (274)
Q Consensus 249 ~~~~~~~~~~~~~~~~ 264 (274)
|+||+|+|+++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~ 254 (261)
T 3nzj_H 239 TAVLKESIVNICDIQE 254 (261)
T ss_dssp SCEEEEEEECCCC---
T ss_pred cceeeEEEEEeeeeeE
Confidence 9999999999985544
No 2
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.5e-57 Score=397.44 Aligned_cols=232 Identities=50% Similarity=0.835 Sum_probs=214.6
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++++|||+|++||+|++||..+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~ 200 (274)
+++++.+++|++||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||.
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAIT 160 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccCCCcccCc-eeeeeeeeeEeccceeEeeecCCCCCC
Q 023965 201 SGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPK-KTEVLLTKITPLENQVEVIEVGDSMEE 274 (274)
Q Consensus 201 ~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (274)
.++.+|..++++++|++|+++|+++++++++++.|. .|+..|+|++ +|+||+++|.|+. +|.+.++.+.||+
T Consensus 161 ~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (234)
T 3unf_H 161 AGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV-QRAGRYRFAPGTTPVLTREVRPLT-LELLEETVQAMEV 233 (234)
T ss_dssp HHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC-CCCCCCCCCTTCSCEEEEEEEEC---------------
T ss_pred HHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc-cccccccCCCCCcceeeEEEEEee-EEEEEeeeeeccC
Confidence 999999999999999999999999999999999999 6999999999 9999999999995 7888888889985
No 3
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=9.1e-55 Score=381.38 Aligned_cols=232 Identities=59% Similarity=0.963 Sum_probs=214.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++++|||+|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~ 200 (274)
+++++.+++|++||++++|+||||++||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||.
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIA 160 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccCCCcccCc-eeeeeeeeeEeccceeEeeecCCCCCC
Q 023965 201 SGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPK-KTEVLLTKITPLENQVEVIEVGDSMEE 274 (274)
Q Consensus 201 ~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (274)
.++.+|..++++++|++|+++|+++++++.++++|.+ |+.+|+||+ +|+||+|+|.|+. .+.+.++.+.||+
T Consensus 161 ~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (234)
T 1iru_I 161 AGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT-RLGRYRCEKGTTAVLTEKITPLE-IEVLEETVQTMDT 233 (234)
T ss_dssp HHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCC-CCSCCCCCTTCSCBSCCCCCBCC--------------
T ss_pred HHHHhcccCCCCEEEEEEECCcEEEEcceecCccccc-cccCcccCCCceeeeEEEEEecc-hhheecccccccC
Confidence 9999999999999999999999999999999999995 799999999 9999999999996 3334444467885
No 4
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5.1e-53 Score=367.48 Aligned_cols=219 Identities=58% Similarity=0.919 Sum_probs=213.7
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~ 200 (274)
+++++.+++|++||++++|+||+|++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||.
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQ 160 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcEEEEEEeCCC-EEEeccccCCCCCCcccCCCcccCc-eeeeeeeeeEecc
Q 023965 201 SGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTYISSKGYSFPK-KTEVLLTKITPLE 260 (274)
Q Consensus 201 ~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 260 (274)
.++.+|..++++++|++|+++| +++++++.++..|.+ |..+|.||+ +|+||+|+|++++
T Consensus 161 ~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (222)
T 1ryp_I 161 AGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTTAVLKESIVNIC 221 (222)
T ss_dssp HHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTCSCEEEEEECCCC
T ss_pred HHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccc-cccCcccCCCceeeeeeeeEecc
Confidence 9999999999999999999999 999999999999995 789999999 9999999998874
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=8e-54 Score=374.95 Aligned_cols=210 Identities=15% Similarity=0.192 Sum_probs=201.4
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++||+|++||..+|++.+
T Consensus 12 fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 85 (233)
T 1iru_B 12 FSPSGKLVQIEYA-----LAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVL 85 (233)
T ss_dssp CCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHH
T ss_pred ECCCCeEehhHhH-----HHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHH
Confidence 9999999999999 8999999999999999999999999998 578888999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-----CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.++++.+++.|+++++++++++.+++++++.++.|. +||++++|+||||++||+||.+||+|++.+++++|+|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~g 165 (233)
T 1iru_B 86 VHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKN 165 (233)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECCC
Confidence 999999999999999999999999999999997652 699999999999988999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
+.+++++||+.|+++||++||++++++||..++++| .++++++|++|+++|++++.+.+++
T Consensus 166 s~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~ 226 (233)
T 1iru_B 166 YVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVK 226 (233)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHH
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHH
Confidence 999999999999999999999999999999999999 6799999999999999988887664
No 6
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.3e-53 Score=373.63 Aligned_cols=213 Identities=22% Similarity=0.356 Sum_probs=199.3
Q ss_pred CCcc-----ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEec
Q 023965 12 GGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGA 86 (274)
Q Consensus 12 ~g~~-----fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~s 86 (274)
+||| |||+||++||||| ++|+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++||+|++|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~a 79 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYA-----REAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTS 79 (233)
T ss_dssp -------CCCCTTSCCHHHHHH-----HHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEE
T ss_pred ccCCCCCceECcCCeeHHHHhH-----HHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEe
Confidence 4665 9999999999999 899999999999999999999999999996 6778899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-----CcceeEEEEEEEeCCCCEEEEEcCCCCeee
Q 023965 87 GTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGSTDT 161 (274)
Q Consensus 87 G~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~ 161 (274)
|..+|++.+.++++.+++.|+++++++++++.+++++++.++.|+ |||++++|+||||++||+||.+||+|++.+
T Consensus 80 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~ 159 (233)
T 1yar_A 80 GLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINE 159 (233)
T ss_dssp EBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEE
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEe
Confidence 999999999999999999999999999999999999999998653 699999999999998999999999999999
Q ss_pred eCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC-EEEeccccC
Q 023965 162 LPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQL 231 (274)
Q Consensus 162 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~ 231 (274)
++++|+|+|+.+++++||+.|+++||++||++++++||..++++|. ++++++|++|+++| ++++.+.++
T Consensus 160 ~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei 229 (233)
T 1yar_A 160 YKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEV 229 (233)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHH
T ss_pred eeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHH
Confidence 9999999999999999999999999999999999999999999998 69999999999998 777766654
No 7
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.7e-53 Score=375.18 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=200.3
Q ss_pred cccCcchhhHHHhcCCCCCCccccc-cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~-Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
.|||+||++||||| ++|+++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++||+|++||..+|++
T Consensus 9 ~fsp~Grl~QvEYA-----~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 82 (243)
T 1ryp_A 9 IFSPEGRLYQVEYA-----FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82 (243)
T ss_dssp SCCTTSCCHHHHHH-----HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred eECCCCeeHHHHHH-----HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHH
Confidence 49999999999999 899999 9999999999999999999999 6888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~ai 167 (274)
.+.++++.+++.|++.++++++++.+++++++.++.| .+||++++||||||+ +||+||.+||+|++.+++++|+
T Consensus 83 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~ 162 (243)
T 1ryp_A 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATAT 162 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEE
Confidence 9999999999999999999999999999999998433 379999999999997 7899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 168 GSGSLAAMAVFESKYRE-------GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~-------~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
|+|+..++++||+.|++ +||++||++++++||..++.+| .++++++|++|+++|++++.+.+++
T Consensus 163 G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~ 233 (243)
T 1ryp_A 163 GPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIE 233 (243)
T ss_dssp STTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHH
T ss_pred CCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHH
Confidence 99999999999999999 9999999999999999999999 6899999999999998887776553
No 8
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=7.6e-53 Score=370.57 Aligned_cols=208 Identities=21% Similarity=0.304 Sum_probs=197.1
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|||+|||+++||||||+|+|.++|.++ .++.+||++|++||+|++||..+|++.+
T Consensus 15 fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 88 (241)
T 1iru_E 15 FSPEGRLFQVEYD-----IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTL 88 (241)
T ss_dssp BCTTSCBHHHHHH-----HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHH
T ss_pred ECCCCccHHHHHH-----HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHH
Confidence 9999999999999 899999999999999999999999999999877 8899999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc----------cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeE
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFA 165 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~----------~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~ 165 (274)
.++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||.+||+||.+||+|++.+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 168 (241)
T 1iru_E 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDAR 168 (241)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecceE
Confidence 99999999999999999999999999999988655 46999999999999888999999999999999999
Q ss_pred EEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE-EEecccc
Q 023965 166 TMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK-EYLRNHQ 230 (274)
Q Consensus 166 aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~-~~~~~~~ 230 (274)
|+|+|+.+++++||+.|+++||++||++++++||..++++ ..++++++|++|+++|. +++.+.+
T Consensus 169 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~e 233 (241)
T 1iru_E 169 AIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEE 233 (241)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHH
T ss_pred EECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHH
Confidence 9999999999999999999999999999999999999999 67899999999999984 5554443
No 9
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.4e-52 Score=369.58 Aligned_cols=211 Identities=20% Similarity=0.203 Sum_probs=199.6
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++.++ .+||++|++||+|++||..+|++.
T Consensus 10 ~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~ 83 (244)
T 1ryp_G 10 VFSPDGRNFQVEYA-----VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRH 83 (244)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHH
T ss_pred cCCcCCchHHHHhH-----HHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHH
Confidence 39999999999999 899999999999999999999999999998877654 499999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
+.++++.+++.|+++++++++++.+++++++.++.| .+||++++||||||++||+||.+||+|++.+++++|+|+
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~ 163 (244)
T 1ryp_G 84 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECC
Confidence 999999999999999999999999999999999765 379999999999999899999999999999999999999
Q ss_pred ChHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeC---CCEEEeccccC
Q 023965 170 GSLAAMAVFESK---YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK---GDKEYLRNHQL 231 (274)
Q Consensus 170 gs~~a~~~Le~~---~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k---~g~~~~~~~~~ 231 (274)
|+.+++++||+. |+++||++||++++++||..++++|..++.+++|++|++ +|.+...|.++
T Consensus 164 gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~ 231 (244)
T 1ryp_G 164 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231 (244)
T ss_dssp THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHH
T ss_pred ChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHH
Confidence 999999999997 999999999999999999999999999999999999998 78877766544
No 10
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.3e-52 Score=373.25 Aligned_cols=212 Identities=19% Similarity=0.213 Sum_probs=200.9
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 85 (261)
T 1iru_C 11 IFSPEGRLYQVEYA-----MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 85 (261)
T ss_dssp CCCTTSCCHHHHHH-----HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHH
T ss_pred cCCCCCeehHHHhH-----HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHH
Confidence 49999999999999 8999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEe
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
+.++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (261)
T 1iru_C 86 LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIG 165 (261)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeC
Confidence 999999999999999999999999999999999866 369999999999995 78999999999999999999999
Q ss_pred cChHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC----EEEeccccC
Q 023965 169 SGSLAAMAVFESKYRE-GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD----KEYLRNHQL 231 (274)
Q Consensus 169 sgs~~a~~~Le~~~~~-~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g----~~~~~~~~~ 231 (274)
+|+.+++++||+.|++ +||++||++++++||..++.+|..++++++|++|+++| ++++.+.++
T Consensus 166 sgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei 233 (261)
T 1iru_C 166 NNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEV 233 (261)
T ss_dssp TTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHH
T ss_pred cccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHH
Confidence 9999999999999999 99999999999999999999999999999999999997 455555443
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2e-52 Score=368.49 Aligned_cols=211 Identities=17% Similarity=0.228 Sum_probs=197.9
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 85 (244)
T 1ryp_C 11 IFSPEGRLYQVEYA-----LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 85 (244)
T ss_dssp CBCTTSCBHHHHHH-----HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHH
T ss_pred eECcCCeeHHHHhH-----HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHH
Confidence 49999999999999 8999999999999999999999999999987776889999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEe-CCCCEEEEEcCCCCeeeeCeEEEe
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
+.++++.+++.|+++++++++++.+++++++.++.| .|||++++|||||| .+||+||.+||+|++.+++++|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (244)
T 1ryp_C 86 LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVG 165 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEEC
Confidence 999999999999999999999999999999998654 36999999999999 678999999999999999999999
Q ss_pred cChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEe--CCC----EEEecccc
Q 023965 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT--KGD----KEYLRNHQ 230 (274)
Q Consensus 169 sgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~--k~g----~~~~~~~~ 230 (274)
+|+.+++++||+.|+++||++||++++++||..++++|..++++++|++|+ ++| .+++.+.+
T Consensus 166 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~e 233 (244)
T 1ryp_C 166 ANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQE 233 (244)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHH
T ss_pred CCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHH
Confidence 999999999999999999999999999999999999965679999999999 887 44544433
No 12
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-52 Score=368.52 Aligned_cols=211 Identities=23% Similarity=0.274 Sum_probs=198.9
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++ .++.+||++|++||+|++||..+|++
T Consensus 5 t~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~ 78 (242)
T 1ryp_E 5 STFSPEGRLFQVEYS-----LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADAR 78 (242)
T ss_dssp TCBCTTSCBHHHHHH-----HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHH
T ss_pred ceECCCCcChHHHhH-----HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHH
Confidence 469999999999999 899999999999999999999999999998777 88999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----------cCcceeEEEEEEEe-CCCCEEEEEcCCCCeee
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----------QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDT 161 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----------~~p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~ 161 (274)
.+.++++.+++.|+++++++++++.+++++++.++.| .|||++++|+|||| .+||+||.+||+|++.+
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 158 (242)
T 1ryp_E 79 SMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYR 158 (242)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEec
Confidence 9999999999999999999999999999999988764 56999999999999 67899999999999999
Q ss_pred eCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE-EEeccccC
Q 023965 162 LPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK-EYLRNHQL 231 (274)
Q Consensus 162 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~-~~~~~~~~ 231 (274)
++++|+|+|+.+++++||+.|+++||++||++++++||..++.+ ..++++++|++|+++|. +++.+.++
T Consensus 159 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei 228 (242)
T 1ryp_E 159 YNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKT 228 (242)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHH
T ss_pred cCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHH
Confidence 99999999999999999999999999999999999999999999 66799999999999985 66655544
No 13
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.4e-53 Score=374.58 Aligned_cols=216 Identities=24% Similarity=0.367 Sum_probs=197.5
Q ss_pred CCCCcc-----ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEE
Q 023965 10 PKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCC 84 (274)
Q Consensus 10 ~~~g~~-----fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~ 84 (274)
++.||| |||+||++||||| ++|+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++||+|+
T Consensus 8 ~~~~yd~~~t~fSp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~ 81 (264)
T 3h4p_A 8 PPSAYDRAITVFSPEGRLYQVEYA-----REAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAA 81 (264)
T ss_dssp --------CCCCCSSSSCHHHHHH-----HHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEE
T ss_pred CccccCCCcceECCCCeeHHHHhH-----HHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEE
Confidence 456776 9999999999999 899999999999999999999999999996 67788999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-----CcceeEEEEEEEeCCCCEEEEEcCCCCe
Q 023965 85 GAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGST 159 (274)
Q Consensus 85 ~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~p~~v~lIvaG~D~~gp~Ly~idp~G~~ 159 (274)
+||..+|++.++++++.+++.|++.++++++++.++++|++.++.|. +||++++||||||++||+||.+||+|++
T Consensus 82 ~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 82 TSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGAL 161 (264)
T ss_dssp EEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCC
T ss_pred eccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999987652 6999999999999989999999999999
Q ss_pred eeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC--EEEeccccCCC
Q 023965 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQLPN 233 (274)
Q Consensus 160 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g--~~~~~~~~~~~ 233 (274)
.+++++|+|+|+.+++++||+.|+++||++||++++++||..++.+ .++++++|++|++++ ++++.+.++..
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~ 235 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKK 235 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGG
T ss_pred EecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHH
Confidence 9999999999999999999999999999999999999999999976 689999999999864 66666665543
No 14
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=6.8e-52 Score=364.50 Aligned_cols=211 Identities=19% Similarity=0.206 Sum_probs=199.0
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++
T Consensus 7 t~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 81 (241)
T 1ryp_D 7 SIFSPDGHIFQVEYA-----LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSR 81 (241)
T ss_dssp SCCBTTTBCHHHHHH-----HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred eeECCCCcchHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHH
Confidence 359999999999999 899999999999999999999999999999888877999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC--CCCEEEEEcCCCCeeeeCeEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLPFAT 166 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~--~gp~Ly~idp~G~~~~~~~~a 166 (274)
.+.++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~a 161 (241)
T 1ryp_D 82 ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQT 161 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEE
Confidence 9999999999999999999999999999999999865 269999999999998 789999999999999999999
Q ss_pred EecChHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC-EEEeccccCC
Q 023965 167 MGSGSLAAMAVFESKY---REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLP 232 (274)
Q Consensus 167 iGsgs~~a~~~Le~~~---~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~~ 232 (274)
+|+|+..++++||+.| +++||++||++++++||..+++ .++++++|++|+++| ++++.+.+++
T Consensus 162 iG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~ 228 (241)
T 1ryp_D 162 IGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEIN 228 (241)
T ss_dssp ESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHH
T ss_pred ECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHH
Confidence 9999999999999999 9999999999999999999985 679999999999996 7777666553
No 15
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=4.9e-52 Score=363.70 Aligned_cols=209 Identities=22% Similarity=0.192 Sum_probs=197.6
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.. ++.+||++|++||+|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~ 82 (233)
T 1ryp_F 11 TFSPTGRLFQVEYA-----LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARV 82 (233)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCeehHHHHH-----HHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHH
Confidence 59999999999999 89999999999999999999999999999742 47899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
+.++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||++||+||.+||+|++.+++++|+|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~ 162 (233)
T 1ryp_F 83 LSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGA 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEEST
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECC
Confidence 999999999999999999999999999999998654 479999999999999899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCC--CC--CHHHHHHHHHHHHHHhhhcC-CCCCCcEEEEEEeCC-CEEEeccccCC
Q 023965 170 GSLAAMAVFESKYRE--GL--TKEEGISLVCEAICSGIFND-LGSGSNVDICVITKG-DKEYLRNHQLP 232 (274)
Q Consensus 170 gs~~a~~~Le~~~~~--~m--s~eeai~la~~al~~~~~~d-~~sg~~i~i~vi~k~-g~~~~~~~~~~ 232 (274)
|+..++++||+.|++ +| |++||++++++||..++ +| ..++++++|++|+++ +++++.+.++.
T Consensus 163 gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~ 230 (233)
T 1ryp_F 163 RSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVA 230 (233)
T ss_dssp THHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGG
T ss_pred CcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHH
Confidence 999999999999998 99 99999999999999999 77 578999999999999 68888887764
No 16
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.3e-52 Score=366.24 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=197.1
Q ss_pred ccCcchhhHHHhcCCCCCCccccc-cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~-Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
|||+||++||||| ++|+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++||+|++||..+|++.
T Consensus 16 fsp~Grl~QvEya-----~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 89 (246)
T 1iru_A 16 FSPEGRLYQVEYA-----FKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRS 89 (246)
T ss_dssp CCTTSCCHHHHHH-----HHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHH
T ss_pred CCCCCeehHHHHH-----HHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHH
Confidence 9999999999999 899999 9999999999999999999999 58888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEe
Q 023965 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (274)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG 168 (274)
+.++++.+++.|+++++++++++.+++++++.++.| .+||++++||||||+ +||+||.+||+|++.+++++|+|
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 169 (246)
T 1iru_A 90 QVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAG 169 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEEC
Confidence 999999999999999999999999999999886433 369999999999997 78999999999999999999999
Q ss_pred cChHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCE--EEeccccC
Q 023965 169 SGSLAAMAVFESKYRE--GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK--EYLRNHQL 231 (274)
Q Consensus 169 sgs~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~--~~~~~~~~ 231 (274)
+|+..++++||+.|++ +||++||++++++||..++.+| .++++++|++|+++|. +++.+.++
T Consensus 170 ~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei 235 (246)
T 1iru_A 170 VKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEI 235 (246)
T ss_dssp TTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHH
T ss_pred CCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHH
Confidence 9999999999999999 9999999999999999999999 8899999999999995 55555544
No 17
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.5e-52 Score=370.08 Aligned_cols=211 Identities=14% Similarity=0.134 Sum_probs=198.8
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++. ++.+||++|++||+|++||..+|++.+
T Consensus 14 fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l 87 (254)
T 1iru_G 14 FSPDGRVFQVEYA-----MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSL 87 (254)
T ss_dssp CCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CCcCCccHHHHhH-----HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHH
Confidence 9999999999999 8999999999999999999999999999988774 789999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc-----CcceeEEEEEEEe-CCCCEEEEEcCCCCeeeeCeEEEec
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMGS 169 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGs 169 (274)
.++++.+++.|+++++++++++.+++++++.++.|+ |||++++|||||| .+||+||.+||+|++.+++++|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGs 167 (254)
T 1iru_G 88 ADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGK 167 (254)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecC
Confidence 999999999999999999999999999999998763 7999999999999 6789999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC--C-EEEeccccCC
Q 023965 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG--D-KEYLRNHQLP 232 (274)
Q Consensus 170 gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~--g-~~~~~~~~~~ 232 (274)
|+.+++++||+.|+++||++||++++++||..++.+|..++.+++|++|+++ | ++++.+.++.
T Consensus 168 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~ 233 (254)
T 1iru_G 168 ARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIRE 233 (254)
T ss_dssp THHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHH
T ss_pred ccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHH
Confidence 9999999999999999999999999999999999888778899999999987 5 6666655443
No 18
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.1e-51 Score=367.61 Aligned_cols=210 Identities=19% Similarity=0.184 Sum_probs=198.7
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|. .++.+||++|++||+|++||..+|++.+
T Consensus 13 fsP~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l 84 (263)
T 1iru_F 13 WSPQGRIHQIEYA-----MEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLL 84 (263)
T ss_dssp CCTTSCCHHHHHH-----HHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCCCeehHHHHH-----HHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHH
Confidence 9999999999999 8999999999999999999999999999974 2578999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.++++.+++.|++.++++++++.+++++++.++.| .|||++++||||||++||+||.+||+|++.+++++|+|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 164 (263)
T 1iru_F 85 CNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGAR 164 (263)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcc
Confidence 99999999999999999999999999999999754 3799999999999998999999999999999999999999
Q ss_pred hHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhhhcC-CCCCCcEEEEEEeCC-CEEEeccccCCC
Q 023965 171 SLAAMAVFESKYRE--GLTKEEGISLVCEAICSGIFND-LGSGSNVDICVITKG-DKEYLRNHQLPN 233 (274)
Q Consensus 171 s~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d-~~sg~~i~i~vi~k~-g~~~~~~~~~~~ 233 (274)
+..++++||+.|++ +||++||++++++||..++.+| ..++++++|++|+++ +++++.+.+++.
T Consensus 165 s~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~ 231 (263)
T 1iru_F 165 SQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSP 231 (263)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHH
T ss_pred cHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHH
Confidence 99999999999998 9999999999999999999999 578999999999999 688887776643
No 19
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.2e-51 Score=362.35 Aligned_cols=209 Identities=22% Similarity=0.269 Sum_probs=197.2
Q ss_pred ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHH
Q 023965 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (274)
Q Consensus 16 fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l 95 (274)
|||+||++||||| ++|+++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++||+|++||..+|++.+
T Consensus 15 fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l 88 (246)
T 1j2p_A 15 FSPDGRLFQVEYA-----REAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVL 88 (246)
T ss_dssp CCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHH
T ss_pred ECCCCeehHHHhH-----HHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHH
Confidence 9999999999999 899999999999999999999999999986 4558899999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecC
Q 023965 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (274)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 170 (274)
.++++.+++.|+++++++++++.+++++++.++.| .|||++++|+|||| +||+||.+||+|++.+++++|+|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsg 167 (246)
T 1j2p_A 89 IDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGMG 167 (246)
T ss_dssp HHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEESTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECCC
Confidence 99999999999999999999999999999999765 35999999999999 8999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEe-C-CCEEEeccccCC
Q 023965 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT-K-GDKEYLRNHQLP 232 (274)
Q Consensus 171 s~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~-k-~g~~~~~~~~~~ 232 (274)
+.+++++||+.|+++||++||++++++||..++.+ ..++++++|++|+ + ++++++.+.+++
T Consensus 168 s~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~ 230 (246)
T 1j2p_A 168 RMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELK 230 (246)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHH
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHH
Confidence 99999999999999999999999999999999998 7889999999999 6 467777776653
No 20
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.3e-51 Score=370.99 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=195.1
Q ss_pred CCCcc-----ccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEe
Q 023965 11 KGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG 85 (274)
Q Consensus 11 ~~g~~-----fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~ 85 (274)
.+||| |||+||++||||| ++|+++|+|+|||+++||||||+|+|.++|.++.. ..+|||+|++||+|++
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA-----~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~ 78 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYA-----VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVY 78 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEE
T ss_pred cCCccCCcccCCCCCchHHHHHH-----HHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEe
Confidence 45665 9999999999999 89999999999999999999999999999877655 6799999999999999
Q ss_pred cCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeCCCCEEEEEcCCCCee
Q 023965 86 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTD 160 (274)
Q Consensus 86 sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~ 160 (274)
||..+|++.++++++.+++.|++.++++++++.++++|++.++.| .+||++++||||||.+||+||.+||+|++.
T Consensus 79 aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~ 158 (288)
T 3nzj_F 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYW 158 (288)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEE
Confidence 999999999999999999999999999999999999999999766 369999999999999999999999999999
Q ss_pred eeCeEEEecChHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeC
Q 023965 161 TLPFATMGSGSLAAMAVFESK---YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220 (274)
Q Consensus 161 ~~~~~aiGsgs~~a~~~Le~~---~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k 220 (274)
+++++|+|+|+..++++||+. |+++||++||++++++||..+++++..++..++|++|++
T Consensus 159 ~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 159 GYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp EBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred EcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 999999999999999999999 999999999999999999999999988899999999999
No 21
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.3e-51 Score=364.27 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=198.2
Q ss_pred ccccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHH
Q 023965 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (274)
Q Consensus 14 ~~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~ 93 (274)
..|||+||++||||| ++|+++|+|+|||+++||||||+|+|.++| ++..++.+||++|++||+|++||..+|++
T Consensus 8 t~fsp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 8 TVFSPDGHLFQVEYA-----QEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp SCCCTTSCCHHHHHH-----HHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ceECCCCcchHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 359999999999999 899999999999999999999999999997 57778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEe-CCCCEEEEEcCCCCeeeeCeEEE
Q 023965 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~~~~~ai 167 (274)
.+.++++.+++.|+++++++++++.+++++++.++.| .|||++++|||||| .+||+||.+||+|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 9999999999999999999999999999999999765 36999999999999 67899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC-EEEeccccCC
Q 023965 168 GSGSLAAMAVFESKYREGL--TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLP 232 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~m--s~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g-~~~~~~~~~~ 232 (274)
|+|+..++++||+.|+++| |++||++++++||..+++ .++++++|++|+++| ++++.+.+++
T Consensus 162 G~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~ 226 (248)
T 1iru_D 162 GRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIE 226 (248)
T ss_dssp STTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHH
T ss_pred CCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHH
Confidence 9999999999999999999 999999999999999986 468999999999998 7877776654
No 22
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.3e-50 Score=358.21 Aligned_cols=201 Identities=17% Similarity=0.300 Sum_probs=189.7
Q ss_pred cccCcchhhHHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHH
Q 023965 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (274)
Q Consensus 15 ~fs~~gr~~qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~ 94 (274)
.|||+||++||||| ++|+++|||+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 84 (250)
T 1ryp_B 11 TFSPSGKLGQIDYA-----LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84 (250)
T ss_dssp CBCTTSCBHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred eECCCCccHHHHhH-----HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHH
Confidence 39999999999999 8999999999999999999999999998 68888999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhhhcCCCCcHHHHHHHHHHHHHhc-----cCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEE
Q 023965 95 VTDMVSSQLQL-HRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (274)
Q Consensus 95 l~~~l~~~~~~-~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~ai 167 (274)
+.++++.+++. |+..++++++++.+++.+++.++.+ .+||++++||||||+ +||+||.+||+|++.+++++|+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (250)
T 1ryp_B 85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAI 164 (250)
T ss_dssp HHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEe
Confidence 99999999999 9999999999999888888777543 269999999999997 6899999999999999999999
Q ss_pred ecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC
Q 023965 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (274)
Q Consensus 168 Gsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g 222 (274)
|+|+.+++++||+.|+++||++||++++++||..++.++. ++++++|++|++++
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 165 GKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred cCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 9999999999999999999999999999999999998864 79999999999985
No 23
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.8e-48 Score=337.87 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=199.6
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhh-hcCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY-HTGR 112 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~-~~~~ 112 (274)
++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCcHHHHHHHHHHHHHhc---cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCC--CCC
Q 023965 113 ESRVVTALTLLKSHLFKY---QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE--GLT 187 (274)
Q Consensus 113 ~~~v~~la~~l~~~l~~~---~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms 187 (274)
+++++.+++++++.++.+ .+||++++|+||+|++||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt 161 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLS 161 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence 999999999999998754 379999999999998899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCCCCcccC
Q 023965 188 KEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISS 240 (274)
Q Consensus 188 ~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~~~~~~~ 240 (274)
++||++++++||..++++|..++++++|++|+++|++++++.+++..|.|++.
T Consensus 162 ~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~ 214 (219)
T 1iru_N 162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHM 214 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHh
Confidence 99999999999999999999999999999999999999999999999998653
No 24
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.5e-47 Score=335.23 Aligned_cols=206 Identities=18% Similarity=0.273 Sum_probs=198.7
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhh-----
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY----- 108 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~----- 108 (274)
++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHhcc---CcceeEEEEEEEeCC-CCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCC
Q 023965 109 HTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184 (274)
Q Consensus 109 ~~~~~~~v~~la~~l~~~l~~~~---~p~~v~lIvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 184 (274)
+++++++++.+++++++.++.++ +||++++||||||++ ||+||.+||+|++.+++++|+|+|+.+++++||+.|++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 89999999999999999987653 699999999999985 89999999999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC-CEEEeccccCCCC-CCccc
Q 023965 185 -----GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNP-RTYIS 239 (274)
Q Consensus 185 -----~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~-g~~~~~~~~~~~~-~~~~~ 239 (274)
+||++||++++++||..++++|..++++++|++|+++ |++++.+.+++.. |.|++
T Consensus 162 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~ 223 (233)
T 1ryp_N 162 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 223 (233)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGG
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhh
Confidence 9999999999999999999999999999999999999 9999999999999 99866
No 25
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=4.5e-47 Score=328.90 Aligned_cols=198 Identities=29% Similarity=0.423 Sum_probs=184.4
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHH
Q 023965 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai 192 (274)
++++.+++++++.++.++ +||++++|+|||| +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 160 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 160 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHH
Confidence 999999999999998765 6999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCcEEEEEEeC-CCEEEeccccCC
Q 023965 193 SLVCEAICSGIFNDLGSGSNVDICVITK-GDKEYLRNHQLP 232 (274)
Q Consensus 193 ~la~~al~~~~~~d~~sg~~i~i~vi~k-~g~~~~~~~~~~ 232 (274)
+++++||..++++|..++++++|++|++ +|++.+.+.+++
T Consensus 161 ~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~ 201 (217)
T 1yar_H 161 DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIE 201 (217)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHH
Confidence 9999999999999999999999999999 888887776654
No 26
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=4.1e-46 Score=319.19 Aligned_cols=192 Identities=27% Similarity=0.433 Sum_probs=185.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++..++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeC-eEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (274)
Q Consensus 121 ~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~a 198 (274)
+++++.++.++ +||++++|+||||++||+||.+||+|++.+++ ++|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~a 160 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRA 160 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHH
Confidence 99999998765 79999999999999899999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 199 ICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 199 l~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
|..++.+|..++++++|++|+++|++.+.+.+++
T Consensus 161 l~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~ 194 (202)
T 1j2q_H 161 IYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVE 194 (202)
T ss_dssp HHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHH
T ss_pred HHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHH
Confidence 9999999999999999999999999888777654
No 27
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.9e-46 Score=319.53 Aligned_cols=192 Identities=30% Similarity=0.525 Sum_probs=185.4
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 6899999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHH
Q 023965 114 SRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai 192 (274)
++++.+++++++.++.|+..|++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+
T Consensus 82 ~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 161 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999999988766999999999997 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEe
Q 023965 193 SLVCEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (274)
Q Consensus 193 ~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~ 226 (274)
+++++||..++++|..++++++|++|+++|.+..
T Consensus 162 ~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 9999999999999999999999999999997643
No 28
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.8e-46 Score=334.48 Aligned_cols=207 Identities=18% Similarity=0.272 Sum_probs=198.9
Q ss_pred CCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhh----
Q 023965 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY---- 108 (274)
Q Consensus 33 ~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~---- 108 (274)
+.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.|.++++.+++.|++
T Consensus 34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 113 (266)
T 1g0u_M 34 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 113 (266)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccch
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hcCCCCcHHHHHHHHHHHHHhcc---CcceeEEEEEEEeCC-CCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcC
Q 023965 109 -HTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYR 183 (274)
Q Consensus 109 -~~~~~~~v~~la~~l~~~l~~~~---~p~~v~lIvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 183 (274)
.++++++++.+++++++.++.++ +||++++||||||.+ ||+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 114 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 193 (266)
T 1g0u_M 114 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 193 (266)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCS
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhc
Confidence 89999999999999999987653 799999999999985 8999999999999999999999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCC-CEEEeccccCCCC-CCccc
Q 023965 184 E-----GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNP-RTYIS 239 (274)
Q Consensus 184 ~-----~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~-g~~~~~~~~~~~~-~~~~~ 239 (274)
+ +||++||++++++||..++++|..++++++|++|+++ |++++.+.+++.. |.|++
T Consensus 194 ~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~ 256 (266)
T 1g0u_M 194 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 256 (266)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHh
Confidence 9 9999999999999999999999999999999999999 9999999999999 99765
No 29
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-46 Score=325.60 Aligned_cols=193 Identities=31% Similarity=0.475 Sum_probs=185.5
Q ss_pred cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 40 Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
|+|+|||+++||||||+|+|.++|.++..++.+|||+|++||+|++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeC-eEEEecChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 023965 120 LTLLKSHLFKYQ-GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (274)
Q Consensus 120 a~~l~~~l~~~~-~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~ 196 (274)
++++++.+++++ +||++++||||||+ +||+||.+||+|++.+++ ++|+|+|+.+++++||+.|+++||++||+++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999998774 69999999999998 789999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 197 EAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 197 ~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
+||..++.+|..++++++|++|+++|++++.+.++.
T Consensus 161 ~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~ 196 (219)
T 3h4p_a 161 NALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIE 196 (219)
T ss_dssp HHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHH
T ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHH
Confidence 999999999999999999999999999988877653
No 30
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2e-46 Score=332.98 Aligned_cols=206 Identities=15% Similarity=0.209 Sum_probs=183.9
Q ss_pred ccccCcchhh-HHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhH
Q 023965 14 FSFDLCRRND-MLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (274)
Q Consensus 14 ~~fs~~gr~~-qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~ 92 (274)
|=|||+|++. ||||| ++++++|+|+|||+++||||||+|+| +++.+|||+|++||+||+||..+|+
T Consensus 5 ~~~sPe~~~~~qvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~ 71 (259)
T 1q5q_A 5 YYASAEQIMRDRSELA-----RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEF 71 (259)
T ss_dssp ----CHHHHHHHHHHH-----HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHH
T ss_pred cccCHHHHHHHHHHHH-----HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHH
Confidence 5689999995 99999 89999999999999999999999999 2578999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcC-CCCcHHHHHHHHHHHH---Hhc-cCcceeEEEEEEEe----CCCCEEEEEcCCCCee-ee
Q 023965 93 EAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKSHL---FKY-QGHVQAALVLGGVD----ATGPHLHTIYPHGSTD-TL 162 (274)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~~-~~~~v~~la~~l~~~l---~~~-~~p~~v~lIvaG~D----~~gp~Ly~idp~G~~~-~~ 162 (274)
+.+.++++.+++.+++.++ ++++++.++++|++.+ +.+ .+||++++|||||| .+||+||.+||+|++. ++
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~ 151 (259)
T 1q5q_A 72 ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQ 151 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCC
Confidence 9999999999999998888 4999999999999953 333 47999999999999 6889999999999999 78
Q ss_pred CeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh-----hcCCCCCCcEEEEEEeCC----CEEEeccccCCC
Q 023965 163 PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI-----FNDLGSGSNVDICVITKG----DKEYLRNHQLPN 233 (274)
Q Consensus 163 ~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~-----~~d~~sg~~i~i~vi~k~----g~~~~~~~~~~~ 233 (274)
+++|+|+|+..++++||+.|+++||++||++++++||..++ .+|. ++++++|++|+++ +++.+.+.++..
T Consensus 152 ~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~ 230 (259)
T 1q5q_A 152 HFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQ 230 (259)
T ss_dssp SEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHT
T ss_pred CEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHH
Confidence 99999999999999999999999999999999999999999 8998 8999999999999 577776665543
No 31
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.5e-45 Score=316.80 Aligned_cols=192 Identities=19% Similarity=0.280 Sum_probs=183.6
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
...+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++
T Consensus 3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (213)
T 1iru_M 3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKA 82 (213)
T ss_dssp CSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56789999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhc-cCcceeEEEEEEEeCCC-CEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhh---------c
Q 023965 114 SRVVTALTLLKSHLFKY-QGHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK---------Y 182 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~-~~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~---------~ 182 (274)
++++.++++|++.++.. .+||++++|+||||.+| |+||.+||+|++.+++++|+|+|+.+++++||+. |
T Consensus 83 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~ 162 (213)
T 1iru_M 83 MTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 162 (213)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred CCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence 99999999999998754 37999999999999755 9999999999999999999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 183 REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 183 ~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
+++||++||++++++||..++++|..++++++|++|+++|++.
T Consensus 163 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 205 (213)
T 1iru_M 163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEE
Confidence 8999999999999999999999999999999999999999764
No 32
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.8e-46 Score=332.81 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=189.0
Q ss_pred CccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCC
Q 023965 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (274)
Q Consensus 34 ~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~ 113 (274)
..++++|||+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+++++++
T Consensus 69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~ 148 (287)
T 3nzj_K 69 KIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKER 148 (287)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcc-CcceeEEEEEEEe-CCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHH
Q 023965 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191 (274)
Q Consensus 114 ~~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea 191 (274)
++++.+++++++.++.|+ .||++++|||||| .+||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||
T Consensus 149 isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEA 228 (287)
T 3nzj_K 149 ISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 228 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHH
Confidence 999999999999998876 4899999999999 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCC-CCCc
Q 023965 192 ISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPN-PRTY 237 (274)
Q Consensus 192 i~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~-~~~~ 237 (274)
++++++||..++.+|..+|++++|++|+++|++++.+.++.. .|.|
T Consensus 229 i~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~ 275 (287)
T 3nzj_K 229 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKV 275 (287)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988754 3444
No 33
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.3e-45 Score=315.04 Aligned_cols=192 Identities=25% Similarity=0.369 Sum_probs=185.1
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CcceeEEEEEEEeCCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (274)
Q Consensus 121 ~~l~~~l~~~~-~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al 199 (274)
+++++.++.++ .|+++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAI 160 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 99999999885 47999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCcEEEEEEeCCCEEEeccccCC
Q 023965 200 CSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 200 ~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~ 232 (274)
..++.+|..++++++|++|+++|++++.+.+++
T Consensus 161 ~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~ 193 (204)
T 1iru_L 161 YQATYRDAYSGGAVNLYHVREDGWIRVSSDNVA 193 (204)
T ss_dssp HHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHH
T ss_pred HHHHHhCccCCCceEEEEEeCCceEEeCHHHHH
Confidence 999999998999999999999999888877654
No 34
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.6e-45 Score=314.42 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=183.6
Q ss_pred cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 40 Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
.||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 37999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---CcceeEEEEEEEeC--CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHH
Q 023965 120 LTLLKSHLFKYQ---GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (274)
Q Consensus 120 a~~l~~~l~~~~---~p~~v~lIvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~l 194 (274)
++++++.+++++ +||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999998774 49999999999995 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEecccc
Q 023965 195 VCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQ 230 (274)
Q Consensus 195 a~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~ 230 (274)
+++||..+.++|..++++++|++|+++|++.+++++
T Consensus 161 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 161 LKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred HHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 999999999999999999999999999999988864
No 35
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6e-45 Score=316.56 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=184.2
Q ss_pred CCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcC-
Q 023965 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG- 111 (274)
Q Consensus 33 ~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~- 111 (274)
+..++++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++|+|++||..+|++.+.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3578899999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcc-CcceeEEEEEEEeCCC-CEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhh--------
Q 023965 112 RESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK-------- 181 (274)
Q Consensus 112 ~~~~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~-------- 181 (274)
++++++.+++++++.++.++ +||++++||||||.+| |+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 99999999999999997653 6999999999999755 9999999999999999999999999999999998
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 182 ---------YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 182 ---------~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
|+++||++||++++++||..++++|..++++++|++|+++|++.
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 88999999999999999999999999999999999999999764
No 36
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.4e-45 Score=312.93 Aligned_cols=195 Identities=32% Similarity=0.534 Sum_probs=185.5
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al 199 (274)
+++++.++.|+.||++++|+||||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999889999999999997 789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCcEEEEEEeCCCE--EEeccccCCCCC
Q 023965 200 CSGIFNDLGSGSNVDICVITKGDK--EYLRNHQLPNPR 235 (274)
Q Consensus 200 ~~~~~~d~~sg~~i~i~vi~k~g~--~~~~~~~~~~~~ 235 (274)
..++++|..++++++|++|+++|. +++.+.+++...
T Consensus 161 ~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~ 198 (205)
T 1iru_H 161 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFA 198 (205)
T ss_dssp HHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCC
T ss_pred HHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHH
Confidence 999999999999999999999985 456666665443
No 37
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=5.5e-45 Score=314.51 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=186.3
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-cceeEEEEEEEe-CCCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQG-HVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (274)
Q Consensus 121 ~~l~~~l~~~~~-p~~v~lIvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~a 198 (274)
+++++.++.|+. ||++++|+|||| .+||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 999999998864 899999999999 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcEEEEEEeCCCEEEeccccCCCC
Q 023965 199 ICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP 234 (274)
Q Consensus 199 l~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~~~~~ 234 (274)
|..++++|..++++++|++|+++|++++.+.+++..
T Consensus 161 l~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~ 196 (212)
T 1ryp_L 161 ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGEL 196 (212)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHH
T ss_pred HHHHHHhccccCCceEEEEEcCCceEEECHHHHHHH
Confidence 999999999999999999999999998888877554
No 38
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=9.7e-45 Score=310.43 Aligned_cols=191 Identities=19% Similarity=0.270 Sum_probs=181.3
Q ss_pred cceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 40 Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
.||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hh--ccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeeeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHH
Q 023965 120 LTLLKSHL-FK--YQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (274)
Q Consensus 120 a~~l~~~l-~~--~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la 195 (274)
++++++.+ +. .++||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~ 160 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 99998765 33 2369999999999997 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEEeCCCEEEecccc
Q 023965 196 CEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQ 230 (274)
Q Consensus 196 ~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~~ 230 (274)
++||..+.++|..++++++|++|+++|++.++++.
T Consensus 161 ~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~ 195 (201)
T 1iru_K 161 RKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195 (201)
T ss_dssp HHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBC
T ss_pred HHHHHHHHhhccccCCceEEEEEcCCCeEEeeccc
Confidence 99999999999999999999999999999888764
No 39
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.5e-44 Score=308.77 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=180.7
Q ss_pred ccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCC
Q 023965 35 SYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES 114 (274)
Q Consensus 35 ~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~ 114 (274)
..+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (205)
T 1iru_J 3 IMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQI 82 (205)
T ss_dssp CTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred cccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 35689999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcc-CcceeEEEEEEEeC--CCCEEEEEcCCCCeeee-CeEEEecChHHHHHHHHhhcCCCCCHHH
Q 023965 115 RVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEE 190 (274)
Q Consensus 115 ~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~--~gp~Ly~idp~G~~~~~-~~~aiGsgs~~a~~~Le~~~~~~ms~ee 190 (274)
+++.+++++++.++.++ +||++++|+||||+ +||+||.+||+|++.++ +|+|+|+|+.+++++||+.|+++||++|
T Consensus 83 ~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 83 KPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 99999999999987543 59999999999995 78999999999998664 7799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 191 GISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 191 ai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
|++++++||..++++|..++++++|++|+++|++.
T Consensus 163 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 163 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred HHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 99999999999999999999999999999999764
No 40
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=6.9e-44 Score=305.83 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=180.0
Q ss_pred ccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCC
Q 023965 35 SYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES 114 (274)
Q Consensus 35 ~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~ 114 (274)
..+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+ ||+|++||..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 46789999999999999999999999999999888999999999 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcc-CcceeEEEEEEEeC--CCCEEEEEcCCCCeeee-CeEEEecChHHHHHHHHhhcCCCCCHHH
Q 023965 115 RVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEE 190 (274)
Q Consensus 115 ~v~~la~~l~~~l~~~~-~p~~v~lIvaG~D~--~gp~Ly~idp~G~~~~~-~~~aiGsgs~~a~~~Le~~~~~~ms~ee 190 (274)
+++.+++++++.++.++ +||++++|+||||+ +||+||.+||+|++.++ +|+|+|+|+.+++++||+.|+++||++|
T Consensus 82 ~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 161 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPED 161 (204)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHH
Confidence 99999999999987543 59999999999996 78999999999998665 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEE
Q 023965 191 GISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (274)
Q Consensus 191 ai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~ 225 (274)
|++++++||..++++|..++++++|++|+++|++.
T Consensus 162 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 162 LFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999764
No 41
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.8e-44 Score=306.19 Aligned_cols=194 Identities=29% Similarity=0.476 Sum_probs=183.2
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++||+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEEEEeC-CCCEEEEEcCCCCeeee-CeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 023965 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (274)
Q Consensus 121 ~~l~~~l~~~~~p~~v~lIvaG~D~-~gp~Ly~idp~G~~~~~-~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~a 198 (274)
+++++.++++++||++++|+||||+ +||+||. |+|++..+ +++++|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~a 158 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNA 158 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6799999 99997654 577789999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcEEEEEEeCCC--EEEeccccCCCCCC
Q 023965 199 ICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQLPNPRT 236 (274)
Q Consensus 199 l~~~~~~d~~sg~~i~i~vi~k~g--~~~~~~~~~~~~~~ 236 (274)
|..++.+|..++++++|++|+++| .+.+.+.+++..|.
T Consensus 159 l~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 159 ITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 999999999999999999999999 45688888876553
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.2e-44 Score=326.18 Aligned_cols=219 Identities=20% Similarity=0.256 Sum_probs=164.3
Q ss_pred CCCCCCccccCcchhh---H-----------HHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCe
Q 023965 8 IPPKGGFSFDLCRRND---M-----------LSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEK 73 (274)
Q Consensus 8 ~~~~~g~~fs~~gr~~---q-----------veya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~K 73 (274)
.|+.+||+|+++-|+. - ++|| ++ +++|||+|||+++||||||+|+|.++|.++.+++++|
T Consensus 17 ~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya-----~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~K 90 (291)
T 2jay_A 17 TPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGD-----AQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRK 90 (291)
T ss_dssp -----------------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCC
T ss_pred CCCCCCccHHHHhhhcChhhccccccccCcCcccc-----cc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCccc
Confidence 3567899998776665 1 2455 66 8999999999999999999999999998999999999
Q ss_pred eEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHhcc----CcceeEEEEEEEeCC-C-
Q 023965 74 IHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ----GHVQAALVLGGVDAT-G- 147 (274)
Q Consensus 74 I~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~----~p~~v~lIvaG~D~~-g- 147 (274)
||+|++||+|++||..+|++.++++++.+++.|++.++++++++.+++.+++.+++++ +||++++||||||.+ +
T Consensus 91 I~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~ 170 (291)
T 2jay_A 91 VYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD 170 (291)
T ss_dssp EEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSC
T ss_pred EEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCc
Confidence 9999999999999999999999999999999999999999999999999999998763 589999999999975 4
Q ss_pred ----CEEEEEcCCCCee--eeCeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc--E-----E
Q 023965 148 ----PHLHTIYPHGSTD--TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSN--V-----D 214 (274)
Q Consensus 148 ----p~Ly~idp~G~~~--~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~--i-----~ 214 (274)
|+||.+||+|++. +++++|+|+|+.+++++||+.|+++||++||++++++||..++.+|..+++. + +
T Consensus 171 ~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~ 250 (291)
T 2jay_A 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPT 250 (291)
T ss_dssp STTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCE
T ss_pred CCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCE
Confidence 8999999999998 8999999999999999999999999999999999999999999999887764 2 6
Q ss_pred EEEEeCCCEEEeccccCC
Q 023965 215 ICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 215 i~vi~k~g~~~~~~~~~~ 232 (274)
|++|+++|++.+.+.++.
T Consensus 251 v~vi~~dg~~~l~~~ei~ 268 (291)
T 2jay_A 251 AVIIDADGAVDVPESRIA 268 (291)
T ss_dssp EEEEETTEEEECCHHHHH
T ss_pred EEEEECCCeEEcCHHHHH
Confidence 999999999887776553
No 43
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=4.3e-44 Score=315.84 Aligned_cols=204 Identities=14% Similarity=0.166 Sum_probs=177.4
Q ss_pred ccccCcchhh-HHHhcCCCCCCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhH
Q 023965 14 FSFDLCRRND-MLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (274)
Q Consensus 14 ~~fs~~gr~~-qveya~~~~~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~ 92 (274)
|.-||+.-.. ++||| ++|+++|+|+|||+++||||||+|+| .++++|||+|++||+|++||+.+|+
T Consensus 5 ~~~~p~~~~~~r~EYA-----~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~ 71 (248)
T 3mi0_A 5 YFISPEQAMRERSELA-----RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEF 71 (248)
T ss_dssp ---CHHHHHHHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHH
T ss_pred ccCCHHHhcccchHHH-----HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHH
Confidence 4456665333 68999 89999999999999999999999999 2478999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcC-CCCcHHHHHHHHHHHH----HhccCcceeEEEEEEEeC----CCCEEEEEcCCCCeee-e
Q 023965 93 EAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKSHL----FKYQGHVQAALVLGGVDA----TGPHLHTIYPHGSTDT-L 162 (274)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~~-~~~~v~~la~~l~~~l----~~~~~p~~v~lIvaG~D~----~gp~Ly~idp~G~~~~-~ 162 (274)
+.|.+.++..+++|++.++ ++++++.+++++++.+ ++..+||++++||||||+ +||+||++||+|++.+ +
T Consensus 72 ~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~ 151 (248)
T 3mi0_A 72 DNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEP 151 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecc
Confidence 9999999999999999999 8999999999998543 234589999999999998 7899999999999995 9
Q ss_pred CeEEEecChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh-------hcCCCCCCcEEEEEEeCCC----EEEeccccC
Q 023965 163 PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI-------FNDLGSGSNVDICVITKGD----KEYLRNHQL 231 (274)
Q Consensus 163 ~~~aiGsgs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~-------~~d~~sg~~i~i~vi~k~g----~~~~~~~~~ 231 (274)
+++|+|+|+..++++||++|+++||++||++++++||..++ +++ .++.+++|++|+++| ++.+.+.++
T Consensus 152 ~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~~~ei 230 (248)
T 3mi0_A 152 HFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRITGSAL 230 (248)
T ss_dssp SEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHH
T ss_pred cEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECCHHHH
Confidence 99999999999999999999999999999999999999999 555 568999999999997 455544433
No 44
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5.7e-44 Score=322.06 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=186.5
Q ss_pred CCccccccceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCC
Q 023965 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR 112 (274)
Q Consensus 33 ~~~a~~~Gttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~ 112 (274)
+++|+++|+|+|||+++||||||+|+|.++|.++..++.+|||+|+++|+|++||..+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhc----cCcceeEEEEEEEeCC-C-----CEEEEEcCCCCeeee--CeEEEecChHHHHHHHHh
Q 023965 113 ESRVVTALTLLKSHLFKY----QGHVQAALVLGGVDAT-G-----PHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFES 180 (274)
Q Consensus 113 ~~~v~~la~~l~~~l~~~----~~p~~v~lIvaG~D~~-g-----p~Ly~idp~G~~~~~--~~~aiGsgs~~a~~~Le~ 180 (274)
+++++.+++.|++.++.+ .+||++++||||||.+ | |+||.+||+|++.++ +++|+|+|+.+++++||+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 999999999999988754 4799999999999975 6 999999999999999 999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCc--E-----EEEEEeCCCEEEeccccC
Q 023965 181 KYREGLTKEEGISLVCEAICSGIFNDLGSGSN--V-----DICVITKGDKEYLRNHQL 231 (274)
Q Consensus 181 ~~~~~ms~eeai~la~~al~~~~~~d~~sg~~--i-----~i~vi~k~g~~~~~~~~~ 231 (274)
.|+++||++||++++++||..++++|..+|+. + +|++|+++|++.+.+.++
T Consensus 218 ~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei 275 (294)
T 1q5r_H 218 IYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETT 275 (294)
T ss_dssp HCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHH
Confidence 99999999999999999999999999887654 6 999999999888776654
No 45
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.5e-42 Score=304.00 Aligned_cols=192 Identities=21% Similarity=0.241 Sum_probs=180.6
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEecCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~la 120 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----cCcceeEEEEEEEeCC-C-----CEEEEEcCCCCeeee--CeEEEecChHHHHHHHHhhcCCCCCH
Q 023965 121 TLLKSHLFKY----QGHVQAALVLGGVDAT-G-----PHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYREGLTK 188 (274)
Q Consensus 121 ~~l~~~l~~~----~~p~~v~lIvaG~D~~-g-----p~Ly~idp~G~~~~~--~~~aiGsgs~~a~~~Le~~~~~~ms~ 188 (274)
+.|++.++.+ .+||++++||||||.+ | |+||.+||+|++.++ +++|+|+|+.+++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 9999988754 5799999999999985 7 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCc--E-----EEEEEeCCCEEEeccccCC
Q 023965 189 EEGISLVCEAICSGIFNDLGSGSN--V-----DICVITKGDKEYLRNHQLP 232 (274)
Q Consensus 189 eeai~la~~al~~~~~~d~~sg~~--i-----~i~vi~k~g~~~~~~~~~~ 232 (274)
+||++++++||..++++|..+++. + +|++|+++|++.+.+.++.
T Consensus 161 eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~ 211 (235)
T 1q5q_H 161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTS 211 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHH
Confidence 999999999999999999887753 2 9999999998887766553
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.4e-36 Score=255.79 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=152.3
Q ss_pred cccceEEEEEeCCEEEEEEeCCCcCCce-eeccCcCeeEEe-cCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 023965 38 KTGTTIVGLIFQNGVILGADTRATAGSI-VCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR 115 (274)
Q Consensus 38 ~~Gttivgi~~~dGVVlaaD~r~t~g~~-i~~~~~~KI~~I-~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~ 115 (274)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++||+|++||..+|++.+.++++.+++.|+ + +.
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 6799999999999999999999999988 999999999999 999999999999999999999999999988 3 33
Q ss_pred HHHHHHHHHHHHHh--ccCcceeEEEEEEEeCCCCEEEEEcCCCCeee--eCeEEEecChHHHHHHHHhhcCC---CCCH
Q 023965 116 VVTALTLLKSHLFK--YQGHVQAALVLGGVDATGPHLHTIYPHGSTDT--LPFATMGSGSLAAMAVFESKYRE---GLTK 188 (274)
Q Consensus 116 v~~la~~l~~~l~~--~~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~--~~~~aiGsgs~~a~~~Le~~~~~---~ms~ 188 (274)
++. +..|.+.+++ |.|||++++|+| +||+||.+||+|++.+ ++++|+|+|+.+|+++||+.|++ +||.
T Consensus 78 ~~~-~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ 152 (180)
T 2z3b_A 78 KRA-AVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSA 152 (180)
T ss_dssp HHH-HHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHH-HHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCH
Confidence 333 3445666654 458999999998 4799999999999998 49999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 189 EEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 189 eeai~la~~al~~~~~~d~~sg~~i~i~vi 218 (274)
|| ++++||..++++|..+|++++|++|
T Consensus 153 ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 153 SE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp HH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred HH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99 4779999999999999999999998
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=7.4e-36 Score=249.24 Aligned_cols=165 Identities=22% Similarity=0.213 Sum_probs=149.8
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEe-cCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I-~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
||+|||+++||||||+|+|.++|.++.+++.+|||+| ++||+|++||..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999998855 25566
Q ss_pred HHHHHHHHHhc--cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeC--eEEEecChHHHHHHHHhhcC-CCCCHHHHHHH
Q 023965 120 LTLLKSHLFKY--QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLP--FATMGSGSLAAMAVFESKYR-EGLTKEEGISL 194 (274)
Q Consensus 120 a~~l~~~l~~~--~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~--~~aiGsgs~~a~~~Le~~~~-~~ms~eeai~l 194 (274)
+++. +.++++ .+||++++|+| | ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++||. .++
T Consensus 76 ~~l~-~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l 147 (171)
T 1m4y_A 76 VELA-KDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REI 147 (171)
T ss_dssp HHHH-HHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHH
T ss_pred HHHH-HHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHH
Confidence 6654 456554 46899999988 5 89999999999999987 99999999999999999999 99996 678
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEE
Q 023965 195 VCEAICSGIFNDLGSGSNVDICVI 218 (274)
Q Consensus 195 a~~al~~~~~~d~~sg~~i~i~vi 218 (274)
+++||+.++++|..++++++|+++
T Consensus 148 ~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 148 VEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999999999999999874
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.6e-35 Score=247.89 Aligned_cols=166 Identities=18% Similarity=0.185 Sum_probs=150.8
Q ss_pred ceEEEEEeCCEEEEEEeCCCcCCceeeccCcCeeEEe-cCcEEEEecCChhhHHHHHHHHHHHHhhhhhhcCCCCcHHHH
Q 023965 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (274)
Q Consensus 41 ttivgi~~~dGVVlaaD~r~t~g~~i~~~~~~KI~~I-~~~I~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~l 119 (274)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++||+|++||..+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999989999999999999 9999999999999999999999999999985 44566
Q ss_pred HHHHHHHHHhc--cCcceeEEEEEEEeCCCCEEEEEcCCCCeeeeC---eEEEecChHHHHHHHHhhcC-CCCCHHHHHH
Q 023965 120 LTLLKSHLFKY--QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLP---FATMGSGSLAAMAVFESKYR-EGLTKEEGIS 193 (274)
Q Consensus 120 a~~l~~~l~~~--~~p~~v~lIvaG~D~~gp~Ly~idp~G~~~~~~---~~aiGsgs~~a~~~Le~~~~-~~ms~eeai~ 193 (274)
+..|++.++++ .||++ .+++|+| ||+||.+||+|++.+++ ++|+|+|+++|+++||+.|+ ++||.+ +
T Consensus 75 ~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~ 147 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---E 147 (174)
T ss_dssp HHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---H
T ss_pred HHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---H
Confidence 67777777654 35655 5667787 89999999999999988 99999999999999999999 999955 7
Q ss_pred HHHHHHHHhhhcCCCCCCcEEEEEEe
Q 023965 194 LVCEAICSGIFNDLGSGSNVDICVIT 219 (274)
Q Consensus 194 la~~al~~~~~~d~~sg~~i~i~vi~ 219 (274)
++++||+.+.++|..++++++|++|+
T Consensus 148 l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 148 IVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHHHHHHHhccccCCceEEEEec
Confidence 99999999999999999999999986
No 49
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=27.52 E-value=1.2e+02 Score=23.98 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCCEEEeccc
Q 023965 173 AAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (274)
Q Consensus 173 ~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g~~~~~~~ 229 (274)
.|.++++..+. .++.+||.+.+++.|......+ +.--+.+++.+|.-+..|.
T Consensus 35 ~a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~l~hP~ 86 (181)
T 3ub6_A 35 ILEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVVLFDPV 86 (181)
T ss_dssp HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBEEECTT
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCEEEeCC
Confidence 45666666655 4899999999999998665322 1236788899998877763
No 50
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=21.48 E-value=1.4e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEeCCC
Q 023965 183 REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (274)
Q Consensus 183 ~~~ms~eeai~la~~al~~~~~~d~~sg~~i~i~vi~k~g 222 (274)
.+.+|+++|.+++..++..+.++. .++.|.|++..|
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G 97 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNG 97 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCC
Confidence 368999999999999999998764 579999999988
Done!