BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023966
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GSA|A Chain A, Structure Of Glutathione Synthetase Complexed With Adp And
Glutathione
pdb|1GSH|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
7.5
pdb|2GLT|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
6.0
Length = 316
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 74 VVAEILYPDKNAFSVAANT--AVTNGSNK------RTAPAPVVGWPPIGSFRKNLAAGGS 125
V+AE L + +A N A+ +G + P + P G R NLAAGG
Sbjct: 182 VIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGR 241
Query: 126 SLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEG 161
+P T+ D +I + K +FV +++ G
Sbjct: 242 GEPRPLTESDWKIARQIGPTLKE-KGLIFVGLDIIG 276
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 TKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
T P+ +E + AK ++ F I+ G+PIGR +S + + F+I L+ G++
Sbjct: 7 TSPNNNSEHQAIAKMRTMIEG-FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,250,954
Number of Sequences: 62578
Number of extensions: 275237
Number of successful extensions: 511
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 22
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)