Query 023966
Match_columns 274
No_of_seqs 179 out of 549
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.1 0.024 8.3E-07 44.1 8.2 73 153-253 7-83 (86)
2 1vd2_A Protein kinase C, IOTA 96.1 0.016 5.4E-07 45.2 7.0 57 152-237 6-62 (89)
3 2kkc_A Sequestosome-1; P62, PB 94.7 0.043 1.5E-06 43.7 5.3 61 152-239 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 93.5 0.14 4.6E-06 41.9 5.9 61 151-238 19-94 (117)
5 1q1o_A Cell division control p 89.9 1.6 5.4E-05 34.6 8.2 74 152-248 5-85 (98)
6 1oey_J P40-PHOX, neutrophil cy 81.6 2.4 8.2E-05 34.1 5.3 38 169-236 28-65 (107)
7 1pqs_A Cell division control p 77.5 3.3 0.00011 31.2 4.7 55 170-248 8-64 (77)
8 2bkf_A Zinc-finger protein NBR 76.1 8.2 0.00028 30.0 6.7 53 154-236 8-60 (87)
9 1wj6_A KIAA0049 protein, RSGI 71.4 8.3 0.00029 30.7 5.8 63 153-247 15-77 (101)
10 1oey_A P67-PHOX, neutrophil cy 60.1 35 0.0012 25.9 7.2 70 153-253 6-78 (83)
11 1e8p_A Endoglucanase, dockerin 54.6 3.6 0.00012 28.6 0.7 14 222-235 19-32 (46)
12 2npt_A Dual specificity mitoge 33.6 76 0.0026 25.2 5.4 56 153-237 15-71 (106)
13 3o27_A Putative uncharacterize 27.8 35 0.0012 25.3 2.4 18 219-236 42-59 (68)
14 2j4m_A Endoglucanase 45A; dock 27.2 14 0.00048 29.4 0.2 13 223-235 21-33 (100)
15 2i1s_A Hypothetical protein; m 23.2 65 0.0022 27.0 3.6 36 153-188 9-46 (188)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.14 E-value=0.024 Score=44.09 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=54.3
Q ss_pred cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966 153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD 232 (274)
Q Consensus 153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD 232 (274)
+-||..-|+.--=-.||-....+|++|+.-|+.+|. +. ...|++.|.|.|||
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~--L~--------------------------~~~f~i~Y~D~dGD 58 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ--IP--------------------------GLDVLLGYTDAHGD 58 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT--CT--------------------------TCCCEEEEECTTSC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC--CC--------------------------CCCEEEEEECCCCC
Confidence 568999988744445666677899999999999996 11 12599999999999
Q ss_pred eEEccCc-ChhHHhhcce---EEEE
Q 023966 233 RMLVGDV-PWHMFVSTVK---KLLV 253 (274)
Q Consensus 233 wMLVGDV-PW~mFv~svK---RLrI 253 (274)
++-+=+. -..+=+.++| ||.|
T Consensus 59 LlpInnDdnl~~Al~~a~plLRl~I 83 (86)
T 1wmh_B 59 LLPLTNDDSLHRALASGPPPLRLLV 83 (86)
T ss_dssp EEECCSHHHHHHHTTSSSSCEEEEE
T ss_pred EeeecCHHHHHHHHHhCCCcEEEEE
Confidence 9987654 4555566666 4544
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.10 E-value=0.016 Score=45.21 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=42.9
Q ss_pred ccceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCC
Q 023966 152 NLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEG 231 (274)
Q Consensus 152 ~~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEG 231 (274)
.+=|||+-.|.-+--.|+. .-+|++|...|.++|.- . ....+++.|.|.||
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~--------------------------~-~~~~f~lky~DEeG 56 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSF--------------------------D-NEQLFTMKWIDEEG 56 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTC--------------------------C-SSCCEEEEECCSSS
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCC--------------------------C-CCCeEEEEEECCCC
Confidence 3668999999755444544 56999999999999961 0 11369999999999
Q ss_pred CeEEcc
Q 023966 232 DRMLVG 237 (274)
Q Consensus 232 DwMLVG 237 (274)
|+.-+-
T Consensus 57 D~itis 62 (89)
T 1vd2_A 57 DPCTVS 62 (89)
T ss_dssp CCEECC
T ss_pred Cccccc
Confidence 986553
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.74 E-value=0.043 Score=43.71 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=44.2
Q ss_pred ccceEEEecCc----ccceeeccCC-----------CCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCC
Q 023966 152 NLFVKINMEGV----PIGRKINLSA-----------YNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSV 216 (274)
Q Consensus 152 ~~~VKV~MdG~----pIGRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll 216 (274)
++-||++..|. .==|++-|.. ..+|++|...+.++|..+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-------------------------- 58 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-------------------------- 58 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS--------------------------
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc--------------------------
Confidence 56799999762 2335555432 248999999999999621
Q ss_pred CCCCceEEEEecCCCCeEEccCc
Q 023966 217 AKSDEYTLLYEDNEGDRMLVGDV 239 (274)
Q Consensus 217 ~gs~eyvltYEDkEGDwMLVGDV 239 (274)
.+ ..|.|.|.|.|||+.-+-+.
T Consensus 59 ~~-~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 59 RP-GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp CS-SCEEEEEECTTCCEEEECSH
T ss_pred CC-CcEEEEEECCCCCEEEecCH
Confidence 11 26999999999999877653
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.46 E-value=0.14 Score=41.90 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=43.7
Q ss_pred CccceEEEecCc----ccceeeccC-----------CCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCC
Q 023966 151 TNLFVKINMEGV----PIGRKINLS-----------AYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSS 215 (274)
Q Consensus 151 ~~~~VKV~MdG~----pIGRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~l 215 (274)
.++-||++..|. .==|++-|. .-.+|+.|...+.++|..+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------------------------- 73 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------------------------- 73 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------------------------
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------------------------
Confidence 367899999751 223555443 2459999999999999621
Q ss_pred CCCCCceEEEEecCCCCeEEccC
Q 023966 216 VAKSDEYTLLYEDNEGDRMLVGD 238 (274)
Q Consensus 216 l~gs~eyvltYEDkEGDwMLVGD 238 (274)
.+ ..|.|.|.|.|||+.-+-.
T Consensus 74 -~~-~~f~l~YkDEdGDlItISs 94 (117)
T 2ktr_A 74 -RP-GGFQAHYRAERGDLVAFSS 94 (117)
T ss_dssp -CS-SCEEEEEECTTCCEEEECS
T ss_pred -CC-CcEEEEEECCCCCEEEecC
Confidence 11 2599999999999887765
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.92 E-value=1.6 Score=34.57 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=53.4
Q ss_pred ccceEEEecCcc----cc--eeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEE
Q 023966 152 NLFVKINMEGVP----IG--RKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLL 225 (274)
Q Consensus 152 ~~~VKV~MdG~p----IG--RKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvlt 225 (274)
++-|||+-+... ++ |.|=+..--+|++|...+.+-|..... + + + +....|-
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~---------------~-----~-i--~~~~klk 61 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN---------------N-----N-I--SPITKIK 61 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS---------------S-----C-C--CCCCCEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc---------------c-----c-c--cceeEEE
Confidence 366888877421 22 666677888999999999999973200 0 0 0 1347899
Q ss_pred EecCCCCeEEccC-cChhHHhhcc
Q 023966 226 YEDNEGDRMLVGD-VPWHMFVSTV 248 (274)
Q Consensus 226 YEDkEGDwMLVGD-VPW~mFv~sv 248 (274)
|+|.|||+...++ .=|+|-+.++
T Consensus 62 YkDEdGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 62 YQDEDGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EECSSSCEEEECSHHHHHHHHHHH
T ss_pred EEcCCCCEEEEcCHHHHHHHHHHH
Confidence 9999999988776 5899888876
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.56 E-value=2.4 Score=34.13 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=31.6
Q ss_pred ccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeEEc
Q 023966 169 NLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLV 236 (274)
Q Consensus 169 DL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwMLV 236 (274)
||+.--.|.+|..-..+-|.. .+-+|-|.|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~------------------------------~DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC------------------------------SSEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhcc------------------------------cceeeeeecCCCCEEEE
Confidence 678888999999999999951 25789999999998544
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.50 E-value=3.3 Score=31.17 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=40.7
Q ss_pred cCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCC-CCceEEEEecCCCCeEEccC-cChhHHhhc
Q 023966 170 LSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAK-SDEYTLLYEDNEGDRMLVGD-VPWHMFVST 247 (274)
Q Consensus 170 L~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~g-s~eyvltYEDkEGDwMLVGD-VPW~mFv~s 247 (274)
...--+|++|...+.+-|..+ . + ++ .....|-|+|.|||+...++ .=|.|=+.+
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-~-----~------------------~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~ 63 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-H-----N------------------NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 63 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-T-----S------------------SCSCSTTCCEEEETTTEEEECCSTTHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-c-----c------------------ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 344568999999999999632 0 0 01 24578999999999987665 689998887
Q ss_pred c
Q 023966 248 V 248 (274)
Q Consensus 248 v 248 (274)
+
T Consensus 64 ~ 64 (77)
T 1pqs_A 64 L 64 (77)
T ss_dssp H
T ss_pred H
Confidence 6
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=76.07 E-value=8.2 Score=29.96 Aligned_cols=53 Identities=8% Similarity=0.222 Sum_probs=40.7
Q ss_pred ceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCe
Q 023966 154 FVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDR 233 (274)
Q Consensus 154 ~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDw 233 (274)
=+||+--|...=--|.-..--++++|...|..+|+ | ..++|.|-|.|||-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~---------------------------L---~~~~ikY~DEenD~ 57 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENEE 57 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---------------------------C---SSEEEEEECTTSCE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC---------------------------C---CceEEEEEcCCCCE
Confidence 46899999754444644457789999999999995 1 25899999999998
Q ss_pred EEc
Q 023966 234 MLV 236 (274)
Q Consensus 234 MLV 236 (274)
.-|
T Consensus 58 v~i 60 (87)
T 2bkf_A 58 VSI 60 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=71.37 E-value=8.3 Score=30.70 Aligned_cols=63 Identities=6% Similarity=0.190 Sum_probs=46.1
Q ss_pred cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966 153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD 232 (274)
Q Consensus 153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD 232 (274)
.-+||+--|...=--|.-..--++++|...|..+|. | ..++|.|-|.|||
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~---------------------------L---~~~~IkY~DEenD 64 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENE 64 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC---------------------------C---SSBCCEEECTTSC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC---------------------------C---CceEEEEecCCCC
Confidence 347999999865445755557789999999999995 1 1589999999999
Q ss_pred eEEccCcChhHHhhc
Q 023966 233 RMLVGDVPWHMFVST 247 (274)
Q Consensus 233 wMLVGDVPW~mFv~s 247 (274)
-.-|=- +.+|-+.
T Consensus 65 ~V~i~S--q~E~eEA 77 (101)
T 1wj6_A 65 EVSINS--QGEYEEA 77 (101)
T ss_dssp EECCCS--HHHHHHH
T ss_pred EEEEec--HHHHHHH
Confidence 887633 5555443
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=60.10 E-value=35 Score=25.92 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=52.0
Q ss_pred cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEec-CCC
Q 023966 153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYED-NEG 231 (274)
Q Consensus 153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYED-kEG 231 (274)
+=|||+-. +--.|....=-+|.+|...|.+=+.- . ...-+|-|.| .+|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l--~--------------------------~~~~~LsYk~~~s~ 54 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLEL--R--------------------------LEHTKLSYRPRDSN 54 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTC--C--------------------------GGGCCEEECCTTCS
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCC--C--------------------------cceeEEEeeCCCCC
Confidence 34677766 66777778888999999999888851 0 0134688999 688
Q ss_pred CeEEccCcChhHHhhcce--EEEE
Q 023966 232 DRMLVGDVPWHMFVSTVK--KLLV 253 (274)
Q Consensus 232 DwMLVGDVPW~mFv~svK--RLrI 253 (274)
.|++.+|.=|+.-...|+ ||++
T Consensus 55 ~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 55 ELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp SCEECCTTTHHHHHTTCBTTEEEE
T ss_pred CeeccChHHHHHHHHhccCCcEEE
Confidence 899999999998877744 5655
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=54.63 E-value=3.6 Score=28.55 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.6
Q ss_pred eEEEEecCCCCeEE
Q 023966 222 YTLLYEDNEGDRML 235 (274)
Q Consensus 222 yvltYEDkEGDwML 235 (274)
-.++|+|.||||=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 35889999999954
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=33.62 E-value=76 Score=25.17 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=38.1
Q ss_pred cceEEEec-CcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCC
Q 023966 153 LFVKINME-GVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEG 231 (274)
Q Consensus 153 ~~VKV~Md-G~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEG 231 (274)
+-+.+... |.++--.||-..+=+|..|..++.+..-.- .--.+-|||.+|
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a-----------------------------T~TAFeYEDE~g 65 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA-----------------------------TTTAFEYEDEDG 65 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS-----------------------------CCSEEEEECTTS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc-----------------------------eeeeeeeccccC
Confidence 34566665 667777888777788999998888776411 123567999999
Q ss_pred CeEEcc
Q 023966 232 DRMLVG 237 (274)
Q Consensus 232 DwMLVG 237 (274)
|++-|-
T Consensus 66 DRITVR 71 (106)
T 2npt_A 66 DRITVR 71 (106)
T ss_dssp CEEEEC
T ss_pred CeeEEc
Confidence 987663
No 13
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=27.78 E-value=35 Score=25.35 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=15.7
Q ss_pred CCceEEEEecCCCCeEEc
Q 023966 219 SDEYTLLYEDNEGDRMLV 236 (274)
Q Consensus 219 s~eyvltYEDkEGDwMLV 236 (274)
..+|.++++|++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 358999999999999885
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=27.23 E-value=14 Score=29.35 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=11.2
Q ss_pred EEEEecCCCCeEE
Q 023966 223 TLLYEDNEGDRML 235 (274)
Q Consensus 223 vltYEDkEGDwML 235 (274)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6889999999964
No 15
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=23.18 E-value=65 Score=26.99 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=33.3
Q ss_pred cceEEEecCc--ccceeeccCCCCCHHHHHHHHHHHhc
Q 023966 153 LFVKINMEGV--PIGRKINLSAYNSYEELSFAIDELFK 188 (274)
Q Consensus 153 ~~VKV~MdG~--pIGRKVDL~~~~sY~eL~~aLe~MF~ 188 (274)
.-+||..+|+ +|=|.|.+..--+..+|..+|+..|+
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 3489999986 89999999999999999999999996
Done!