Your job contains 1 sequence.
>023967
MSVLPKGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIND
YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVE
LLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSL
PDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT
SCTFRKLRENFFNGCTEKYAGVLYGLGVENDKTN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023967
(274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 1125 4.5e-114 1
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 1101 1.6e-111 1
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 884 1.6e-88 1
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 792 8.7e-79 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 768 3.1e-76 1
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 768 3.1e-76 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 768 3.1e-76 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 768 3.1e-76 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 768 3.1e-76 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 767 3.9e-76 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 763 1.0e-75 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 749 3.1e-74 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 746 6.5e-74 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 740 2.8e-73 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 740 2.8e-73 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 740 2.8e-73 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 740 2.8e-73 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 740 2.8e-73 1
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 735 9.6e-73 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 735 9.6e-73 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 712 2.6e-70 1
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 698 8.0e-69 1
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 684 2.4e-67 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 560 3.7e-66 2
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 666 2.0e-65 1
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 614 6.4e-60 1
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 614 6.4e-60 1
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 599 2.5e-58 1
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 585 7.5e-57 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 494 3.3e-47 1
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 442 1.1e-41 1
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 417 4.8e-39 1
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 400 3.0e-37 1
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 291 3.0e-35 2
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 369 5.8e-34 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 369 5.8e-34 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 366 1.2e-33 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 341 5.4e-31 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 326 2.1e-29 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 326 2.1e-29 1
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 320 9.1e-29 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 319 1.2e-28 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 315 3.1e-28 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 303 5.7e-27 1
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 303 5.7e-27 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 291 1.1e-25 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 291 1.1e-25 1
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 265 6.1e-23 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 256 5.5e-22 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 252 1.5e-21 1
UNIPROTKB|H0YBT3 - symbol:CNOT7 "CCR4-NOT transcription c... 164 4.7e-12 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 159 1.8e-11 1
UNIPROTKB|E5RJE0 - symbol:CNOT7 "CCR4-NOT transcription c... 99 9.9e-05 1
UNIPROTKB|E9PU60 - symbol:Pnldc1 "Protein Pnldc1" species... 105 0.00048 2
POMBASE|SPBC29A10.09c - symbol:SPBC29A10.09c "CAF1 family... 100 0.00078 2
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 211/271 (77%), Positives = 238/271 (87%)
Query: 1 MSVLPKGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIND 60
MS+ K D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK +
Sbjct: 1 MSLFLKD-DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTE 59
Query: 61 YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSV 119
Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L DI+A+DS+
Sbjct: 60 YHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSI 119
Query: 120 ELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRS 179
ELL Q GIDF KNNE GID RF ELLMSSGIVLN+ V WVTFHSGYDFGYLLKLLTC++
Sbjct: 120 ELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQN 179
Query: 180 LPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLL 239
LP+TQ GFFE+I++YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLL
Sbjct: 180 LPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLL 239
Query: 240 TSCTFRKLRENFFNGCTEKYAGVLYGLGVEN 270
TSCTFRKL+ENFF G EKY+GVLYGLGVEN
Sbjct: 240 TSCTFRKLQENFFIGSMEKYSGVLYGLGVEN 270
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 205/265 (77%), Positives = 231/265 (87%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKD 68
D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV FK ND NY+TLK+
Sbjct: 8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKE 67
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGID 128
NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL QCGID
Sbjct: 68 NVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
FKKN EKGIDV RFGEL+MSSGIVLND + WVTFH GYDFGYL+KLLTC+ LP QA FF
Sbjct: 128 FKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFF 187
Query: 189 ELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLR 248
+L+ +YFP VYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT +FRKL+
Sbjct: 188 KLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLK 247
Query: 249 ENFFNGCTEKYAGVLYGLGVENDKT 273
E +F G TEKY GVLYGLGVE+ T
Sbjct: 248 ERYFPGSTEKYTGVLYGLGVEDGTT 272
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 169/264 (64%), Positives = 204/264 (77%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYN 62
D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A N N +YN
Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71
Query: 63 YQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 122
Y TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL
Sbjct: 72 YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131
Query: 123 HQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPD 182
+ ID +KNNE G+D RF ELLM SG+VLND + WVTFH GYDFGYLLKLL+ + LP+
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191
Query: 183 TQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSC 242
+ FF+ + +FPVVYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251
Query: 243 TFRKLRENFFNGCTEKYAGVLYGL 266
TF K++E FF G KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 156/270 (57%), Positives = 199/270 (73%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I++VW NL+EE IR +VD YNYIAMDTEFPG+V RPVG F++ +DY+YQTL+ NVD
Sbjct: 8 EIKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDYHYQTLRLNVD 67
Query: 72 MLKLIQLGLTFSDENGNL--PTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDF 129
LK+IQLGLTFSD GNL PTC WQFNF+ F+L +D++A DS++LL + GI+F
Sbjct: 68 QLKIIQLGLTFSDSEGNLAKPTC------TWQFNFK-FSLSEDMYAQDSIDLLSRSGIEF 120
Query: 130 KKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFE 189
KKN GID+ FGE LMSSGIVLND ++W++FHSGYDFGYLLK LTC LP +A FF
Sbjct: 121 KKNEANGIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLDEADFFG 180
Query: 190 LINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRE 249
YFP +YDIK++MK C +L GGL++LA+ L+++R+G HQAGSDSLLTS TF K+R+
Sbjct: 181 SARTYFPCIYDIKYIMKSCKNLKGGLSELADDLDIKRIGPQHQAGSDSLLTSTTFFKMRK 240
Query: 250 NFFNGCTE--KYAGVLYGL---GVENDKTN 274
FF + KY +LYGL G + TN
Sbjct: 241 MFFENQLDDSKYLNILYGLSSFGPDGTPTN 270
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 147/258 (56%), Positives = 193/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 147/258 (56%), Positives = 193/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 147/258 (56%), Positives = 193/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 147/258 (56%), Positives = 193/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 147/258 (56%), Positives = 193/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 147/262 (56%), Positives = 191/262 (72%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+IREVW NLE E +LIRE+VD Y +A+DTEFPG V +P+ + + DYNYQTL+ NVD
Sbjct: 46 EIREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMYPDYNYQTLRSNVD 105
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQ G+TFSD G LP C WQFNF+ F+L DD+++ ++ELL CGIDF++
Sbjct: 106 LLKIIQFGITFSDSTGCLPV----PTCTWQFNFK-FSLKDDMYSPYAIELLKSCGIDFQR 160
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ GIDVN F EL +SSGIVLND ++W+ FH GYDFGYLLK+L+C LP +++ FF+L+
Sbjct: 161 IEDYGIDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLLKVLSCSELPKSESDFFDLL 220
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
+YFP +YD+K+LMK C +L GGL+ LAE L V RVG HQAGSDSLLT+ TF KLRE F
Sbjct: 221 RIYFPCIYDVKYLMKSCKNLKGGLSGLAEDLNVVRVGPQHQAGSDSLLTNSTFFKLREEF 280
Query: 252 FNGCTE--KYAGVLYGLGVEND 271
F + KY G+LYG V +
Sbjct: 281 FENEIDDHKYKGILYGYNVSQN 302
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 147/258 (56%), Positives = 191/258 (74%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NLEEE IR++ K+NYIAMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+L+ LPD + FFE++
Sbjct: 126 HEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FP++YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 141/257 (54%), Positives = 193/257 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW N+EEE IR+I+ YNYIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK++QLGLTF +E+G+ P GT WQFNF+ FNL +D+++ DS++LL G+ FKK+
Sbjct: 72 LKIVQLGLTFMNEDGDYPP-GTTT---WQFNFK-FNLTEDMYSQDSIDLLQNSGLQFKKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL + V+W++FHSGYDFGYL+KLLT LP+ + FF+++N
Sbjct: 127 EEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEEHEFFQILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ LE++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDNIDDAKYCGRLYGLG 263
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 141/257 (54%), Positives = 194/257 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW +NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 11 ICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 70
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 71 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLASSGLQFQKH 125
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL+D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 126 EEEGIDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 185
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 186 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 245
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 246 EDTIDDAKYCGRLYGLG 262
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 141/257 (54%), Positives = 192/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 141/257 (54%), Positives = 192/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 141/257 (54%), Positives = 192/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 141/257 (54%), Positives = 192/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 141/257 (54%), Positives = 192/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 140/241 (58%), Positives = 185/241 (76%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKD 68
+E IR+VW NLEEEF IR++V KY+Y+AMDTEFPGVV RPVG F++ DY+YQ L+
Sbjct: 17 EECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLRC 76
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGID 128
NVD+L++IQLGLTF D++G P G + WQFNF+ FNL +D++A DS++LL GI
Sbjct: 77 NVDLLRIIQLGLTFMDDDGKTPP-G---YSTWQFNFK-FNLSEDMYAQDSIDLLQNSGIQ 131
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
FKK+ E GID F ELLMSSGIVL + ++W+ FHSGYDFGYLLKLLT ++LP ++ FF
Sbjct: 132 FKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFF 191
Query: 189 ELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLR 248
+L+++YFP ++DIK+LMK C +L GGL ++A+ LE+ RVG HQAGSD+LLT F K+R
Sbjct: 192 DLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMR 251
Query: 249 E 249
E
Sbjct: 252 E 252
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 140/257 (54%), Positives = 191/257 (74%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IRE V Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLG 267
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLG 263
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 133/235 (56%), Positives = 179/235 (76%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRK 246
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT + +
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNAYEE 240
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 147/272 (54%), Positives = 187/272 (68%)
Query: 4 LPKGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNY 63
L G + REVW +NLE EF LI EI+D Y +I+MDTEFPGV+ + F N +D Y
Sbjct: 10 LKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-Y 68
Query: 64 QTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD--KFCIWQFNFREFNLIDDIFASDSVEL 121
LK NVD L LIQ+GLT SD NGNLP G D + IW+FNFR+F++ D A DS+EL
Sbjct: 69 TLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIEL 128
Query: 122 LHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLP 181
L + GIDF++N G++ RF EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT R LP
Sbjct: 129 LRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELP 188
Query: 182 DTQAGFFELINMYFPV-VYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSL 238
F ++ + F VYD+KH+MKFC L GGL+++A LEV R VG CHQAGSDSL
Sbjct: 189 GALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSL 248
Query: 239 LTSCTFRKLRENFF--NGCTEKYAGVLYGLGV 268
LT F+++R+ +F +G EK+AGVLYGL V
Sbjct: 249 LTWHAFQRMRDLYFVQDG-PEKHAGVLYGLEV 279
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 144/269 (53%), Positives = 188/269 (69%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRP-VGAFKNIN-DYNYQTL 66
D I IR+VW NLE EF LIR IV+ Y +I+MDTEFPGV+ + + + N +Y Y L
Sbjct: 10 DVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLL 69
Query: 67 KDNVDMLKLIQLGLTFSDENGNLPTCGTDKF--CIWQFNFREFNLIDDIFASDSVELLHQ 124
K NVD L LIQ+GLT SD +GNLP G K IW+FNFR+F++ D A DS+ELL +
Sbjct: 70 KSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRR 129
Query: 125 CGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQ 184
GIDF++N +G++ RF EL+MSSG++ N+ V WVTFHS YDFGYL+K+LT R LP
Sbjct: 130 HGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVAL 189
Query: 185 AGFFELINMYF-PVVYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSLLTS 241
F L+ +F VYD+KH+M+FC L+GGL+++A LEV R VG CHQAGSDSLLT
Sbjct: 190 REFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTW 249
Query: 242 CTFRKLRENFF--NGCTEKYAGVLYGLGV 268
F+++R+ +F +G EK+AGVLYGL V
Sbjct: 250 QAFQRMRDLYFVEDGA-EKHAGVLYGLEV 277
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 560 (202.2 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 106/213 (49%), Positives = 151/213 (70%)
Query: 7 GGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTL 66
GG + +IR+VW NL +E A++R +V++Y YI+MDTEFPG+V RP+G+F N DY+YQTL
Sbjct: 132 GGVKTRIRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARPIGSFTNKADYHYQTL 191
Query: 67 KDNVDMLKLIQLGLTFSDENGNLPTC-GTDKF------------CIWQFNFREFNLIDDI 113
+ NVD+LK+IQLG+T G +P TD C WQFNFR F+L +D+
Sbjct: 192 RCNVDLLKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFR-FSLEEDM 250
Query: 114 FASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLK 173
+A +S +L + GIDF + + GID FG LL+SSG+VL D V W++FHSGYDFGYL+K
Sbjct: 251 YAQESTAMLAKAGIDFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGYLMK 310
Query: 174 LLTCRSLPDTQAGFFELINMYFPVVYDIKHLMK 206
++ C++LP+ + F +L+N++FP +YDIK+LMK
Sbjct: 311 IMLCQALPENEEEFHKLLNIFFPSLYDIKYLMK 343
Score = 131 (51.2 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 214 GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNGCTE--KYAGVLYGL 266
GL +A+ L V+RVGI HQAGSDSL+T F K+R+ FNG + KY+G ++GL
Sbjct: 372 GLQDIADELGVKRVGIAHQAGSDSLVTGEIFWKMRQLVFNGKIDDSKYSGQIWGL 426
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 129/256 (50%), Positives = 180/256 (70%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
IR+VW+ NL++E LI ++++Y ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQ+GL SDE GN P + C WQFNF FNL DD++A +S+ELL + GIDFKK+
Sbjct: 85 LKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKH 139
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E GI+ F ELL+ SG+VL + V W+TFHSGYDF YLLK +T LP F++++
Sbjct: 140 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 199
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
+YFP YDIK++MK + GL +A+ L++ R+G HQAGSD+LLT+ F ++R +F
Sbjct: 200 IYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 259
Query: 253 NGCTE-KYAGVLYGLG 267
+G + + LYGLG
Sbjct: 260 DGSIDSRMLNQLYGLG 275
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 113/200 (56%), Positives = 153/200 (76%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSL 211
++FPV+YD+K+LMK C +L
Sbjct: 186 RLFFPVIYDVKYLMKSCKNL 205
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 113/200 (56%), Positives = 153/200 (76%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSL 211
++FPV+YD+K+LMK C +L
Sbjct: 186 RLFFPVIYDVKYLMKSCKNL 205
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 125/269 (46%), Positives = 172/269 (63%)
Query: 7 GGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTL 66
G E++I V+ N+EEEFA IR V+ Y Y+AMDTEFPGVV P+G F++ D+NYQ +
Sbjct: 17 GAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQV 76
Query: 67 KDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCG 126
NV+MLKLIQ+G ++ G LP G +WQFNF F+ +D+F+ +SVE+L Q G
Sbjct: 77 FCNVNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAG 131
Query: 127 IDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAG 186
IDF GI FGELL +SG++ + + W+TF SGYDFGYLLK +T LP ++
Sbjct: 132 IDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEEST 191
Query: 187 FFELINMYFPVVYDIKHLMKF--CNS--LHGGLNKLAELLEVERVGICHQAGSDSLLTSC 242
FF FP +DIK L++ C S L GGL ++A+ L+V+R G+ HQAGSD+LLT+
Sbjct: 192 FFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAA 251
Query: 243 TFRKLRENFF----NGCTEKYAGVLYGLG 267
TF K+++ FF N G ++GLG
Sbjct: 252 TFFKIKKQFFGDNWNQIAPLICGHMFGLG 280
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 107/189 (56%), Positives = 145/189 (76%)
Query: 23 EEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTF 82
EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF
Sbjct: 2 EEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTF 61
Query: 83 SDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRF 142
+E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F
Sbjct: 62 MNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYF 116
Query: 143 GELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIK 202
ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++ ++FPV+YD+K
Sbjct: 117 AELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVK 176
Query: 203 HLMKFCNSL 211
+LMK C +L
Sbjct: 177 YLMKSCKNL 185
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 110/274 (40%), Positives = 164/274 (59%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
+R+VW NL EFA+IR++V +YN++++ TEF G + RP+G F++ DY+YQT++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
L IQLGL+ SD NGN P G WQFNF EF+ +I +++S+ELL + GI+F+K+
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGPST---WQFNF-EFDPKKEIMSTESLELLRKSGINFEKH 275
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
GIDV F +LLM SG++++D V W+T+H+ YD G+L+ +L S+P+ + F ++
Sbjct: 276 ENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVH 335
Query: 193 MYFPVVYDI----KHLMKFCN-SLHGG----------LNKLAELLEVERVGICHQAGSDS 237
Y P YD+ K + +F N L L LA+ L + R I G S
Sbjct: 336 QYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQS 395
Query: 238 LL---TSCTFRKLRENFFNGCTE--KYAGVLYGL 266
LL + C KL + F T+ KY GV+YG+
Sbjct: 396 LLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 80/157 (50%), Positives = 117/157 (74%)
Query: 113 IFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLL 172
+++ DS++LL G+ F+K+ E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 173 KLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQ 232
KLLT LP+ + FF ++N++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQ
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQ 120
Query: 233 AGSDSLLTSCTFRKLRENFFNGCTE--KYAGVLYGLG 267
AGSDSLLT F +++E FF + KY G LYGLG
Sbjct: 121 AGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 157
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 82/142 (57%), Positives = 105/142 (73%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVL 153
+ E+GI+ F ELLM+SG+VL
Sbjct: 126 HEEEGIETQYFAELLMTSGVVL 147
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 94/261 (36%), Positives = 142/261 (54%)
Query: 14 REVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDML 73
R VW N++EE A + E + ++ IA DTE+PG++ R F + +D Y+ +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNN 133
KLIQ G T + G + G +W+ NF F D S+E L + G+D +K
Sbjct: 68 KLIQCGFTLFNAKGEIG--G-----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR 120
Query: 134 EKGIDVNRFGELLMSSGIVLNDV-VRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
++G+D+ +G + + V +VTF YDF Y L +L LP+T F +
Sbjct: 121 DEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVV 180
Query: 193 MYFPVVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLREN 250
F VYD K + FC L H GL+KLA+LL++ RVG H AGSDSL+T+ F KL+
Sbjct: 181 KVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHV 240
Query: 251 FFNGCTEKYA-GVLYGLGVEN 270
+ + ++A G++YG+G N
Sbjct: 241 YEDS---RFARGLIYGIGKSN 258
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 291 (107.5 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 63/172 (36%), Positives = 97/172 (56%)
Query: 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGT 94
Y + + + V+ + F N + N ++ D+ +L+ S + G LP
Sbjct: 176 YQCLRANVDMLNVIQIGITLF-NEDGENPPARPNSTDVAELLGAAGRRSAQQGPLPYT-- 232
Query: 95 DKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLN 154
WQFNF +F+L DD+++ +E L Q GIDF GI+ F L++SSG+V +
Sbjct: 233 -----WQFNF-QFSLKDDMYSQSQIESLLQAGIDFVALERDGINPKEFASLMISSGMVCD 286
Query: 155 DVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMK 206
+ + W++FHS YDFGYLLKLL C LP+ Q F +L+ ++FP VYD+K+ MK
Sbjct: 287 ESISWISFHSAYDFGYLLKLLWCNMLPEDQDEFKQLLRLFFPNVYDVKYFMK 338
Score = 253 (94.1 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
Identities = 43/79 (54%), Positives = 64/79 (81%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+IREVW NL EE A++R+++++Y+YI+MDT FPGVV RP+G+F++ DY+YQ L+ NVD
Sbjct: 125 RIREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRDYHYQCLRANVD 184
Query: 72 MLKLIQLGLTFSDENGNLP 90
ML +IQ+G+T +E+G P
Sbjct: 185 MLNVIQIGITLFNEDGENP 203
Score = 117 (46.2 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 215 LNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFNG-CTEKYAGVLYGL 266
L LAE+L+V+R G HQAGSDSLLT F ++RE F G E G ++GL
Sbjct: 369 LETLAEVLKVKRTGPAHQAGSDSLLTGRAFFQMREKVFGGKLPEDILGQVWGL 421
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 79/196 (40%), Positives = 121/196 (61%)
Query: 13 IREVWNDNLEEEFALIREIV-DKYN--YIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDN 69
I+EVW+ NLE EF +R + DK + +IA+ E PG+V RPVG FK+ +DY++QTL+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 70 VDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCG-ID 128
D+L LIQL L + N T T IWQFNF ++L +++ + + +L Q I+
Sbjct: 214 SDLLNLIQLSLCVIKISKN-ETISTP--VIWQFNFL-YDLTKEMYNEEHLAMLAQTSQIN 269
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
F+ + GI F EL++ SG++L+D + WV+FH+GYD G+ + LL+ LP + F+
Sbjct: 270 FQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFY 329
Query: 189 ELINMYFPVVYDIKHL 204
YFP YD+K++
Sbjct: 330 WWCAKYFPNFYDLKYI 345
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 79/196 (40%), Positives = 121/196 (61%)
Query: 13 IREVWNDNLEEEFALIREIV-DKYN--YIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDN 69
I+EVW+ NLE EF +R + DK + +IA+ E PG+V RPVG FK+ +DY++QTL+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 70 VDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCG-ID 128
D+L LIQL L + N T T IWQFNF ++L +++ + + +L Q I+
Sbjct: 214 SDLLNLIQLSLCVIKISKN-ETISTP--VIWQFNFL-YDLTKEMYNEEHLAMLAQTSQIN 269
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
F+ + GI F EL++ SG++L+D + WV+FH+GYD G+ + LL+ LP + F+
Sbjct: 270 FQLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFY 329
Query: 189 ELINMYFPVVYDIKHL 204
YFP YD+K++
Sbjct: 330 WWCAKYFPNFYDLKYI 345
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 72/126 (57%), Positives = 95/126 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGID 138
E+GID
Sbjct: 127 EEEGID 132
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 93/250 (37%), Positives = 126/250 (50%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKDNVDML 73
EVW N + E IR+ + N IA+DTEFPG + P+ A I Y+ +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIR---YRDMKFNVDNT 60
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNN 133
LIQLGLT + G K W+ N +FN + S+ L G+D K
Sbjct: 61 HLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIR 111
Query: 134 EKGIDVNRFGELLMSSGIVLNDV---VRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFEL 190
E+GI + F M +LN+ +RWVTF YD YLLK LT + LP+T F E
Sbjct: 112 EEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDET 168
Query: 191 INMYFP-VVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKL 247
+ VYD+K + C+ L GL ++A++L++ RVG H AGSDS LT+ F KL
Sbjct: 169 VQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
Query: 248 RENFFNGCTE 257
+ N E
Sbjct: 229 IFDLVNSRKE 238
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 122
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 122
LK+IQLGLTF++E G P+ G + WQFNF+ FNL +D+++ DS++LL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLL 116
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 86/245 (35%), Positives = 125/245 (51%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKDNVDML 73
EVW N E E IR+ + ++ IA+DTEFPG + P+ A + I Y+ +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIR---YRDMKFNVDNT 59
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASD-SVELLHQCGIDFKKN 132
LIQLG T D G T W+ N +FN F +D S+ L G++ K
Sbjct: 60 HLIQLGFTLFDRRGITKT--------WEINLSDFNE-HKCFKNDKSIAFLKSNGLNLDKI 110
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTC-RSLPDTQAGFFELI 191
E+GI + F + + WV F YD YL+K LT + LP+T+ F E +
Sbjct: 111 GEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETV 170
Query: 192 NMYF-PVVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLR 248
V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LT+ F KL
Sbjct: 171 EQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLT 230
Query: 249 ENFFN 253
+ N
Sbjct: 231 FDLLN 235
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 83/229 (36%), Positives = 115/229 (50%)
Query: 26 ALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE 85
+LI + + Y +IA+DTEFP LR ++ Y + +VD KLIQLGLT D
Sbjct: 2 SLIEDCLRSYRFIAIDTEFPST-LRETTQHAT-DEERYMDMSFSVDRAKLIQLGLTLFDI 59
Query: 86 NGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRF-GE 144
NG + GT W+ NF +F +DD S+E L + G+D +K E+GI + F E
Sbjct: 60 NGRIG--GT-----WEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSE 111
Query: 145 LLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHL 204
+ ++ WVTFH YD YLLK T +LP T F + + VYD+K +
Sbjct: 112 MFWMLKKTRRNIT-WVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVM 170
Query: 205 MKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
C L GL LA + RVG H AGS++ LT+ F K+ F
Sbjct: 171 AGRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 86/250 (34%), Positives = 127/250 (50%)
Query: 10 EIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKD 68
+I EVW N E E IR+ + + IA+DTEFPG + P+ A + I Y+ +K
Sbjct: 3 QISSGEVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIR---YRDMKF 59
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASD-SVELLHQCGI 127
NVD LIQLG T D G T W+ N +F+ F +D S+ L G+
Sbjct: 60 NVDNTHLIQLGFTLFDRRGFAKT--------WEINLSDFDE-HKCFKNDKSIAFLKSNGL 110
Query: 128 DFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTC-RSLPDTQAG 186
+ K E+GI ++ F + + WV F YD YL+K LT + LP+T+
Sbjct: 111 NLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEE 170
Query: 187 FFELINMYF-PVVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCT 243
F E + V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LT+
Sbjct: 171 FHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARV 230
Query: 244 FRKLRENFFN 253
F KL + N
Sbjct: 231 FTKLTFDLLN 240
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 67/150 (44%), Positives = 96/150 (64%)
Query: 122 LHQCGIDFKKNNEKGID-VNRFGELLMSSGIVLNDVVRWVTFH-SGYDFGYLLKLLTCRS 179
L +C +D K + G+ N GE SGI N F+ +GYDFGY++KLLT
Sbjct: 64 LLRCNVDLLKIIQLGLTFTNEKGEY--PSGI--NTWQFNFKFNLTGYDFGYMVKLLTDSR 119
Query: 180 LPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLL 239
LP+ + FF ++N++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLL
Sbjct: 120 LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLL 179
Query: 240 TSCTFRKLRENFFNGCTE--KYAGVLYGLG 267
T F +++E FF + KY G LYGLG
Sbjct: 180 TGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 60/97 (61%), Positives = 73/97 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNL 109
LK+IQLGLTF++E G P+ G + WQFNF+ FNL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNL 103
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 67/150 (44%), Positives = 96/150 (64%)
Query: 122 LHQCGIDFKKNNEKGID-VNRFGELLMSSGIVLNDVVRWVTFH-SGYDFGYLLKLLTCRS 179
L +C +D K + G+ N GE SGI N F+ +GYDFGY++KLLT
Sbjct: 64 LLRCNVDLLKIIQLGLTFTNEKGEY--PSGI--NTWQFNFKFNLTGYDFGYMVKLLTDSR 119
Query: 180 LPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLL 239
LP+ + FF ++N++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLL
Sbjct: 120 LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLL 179
Query: 240 TSCTFRKLRENFFNGCTE--KYAGVLYGLG 267
T F +++E FF + KY G LYGLG
Sbjct: 180 TGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 60/97 (61%), Positives = 73/97 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNL 109
LK+IQLGLTF++E G P+ G + WQFNF+ FNL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNL 103
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 60/97 (61%), Positives = 73/97 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNL 109
LK+IQLGLTF++E G P+ G + WQFNF+ FNL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNL 103
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 60/97 (61%), Positives = 73/97 (75%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNL 109
LK+IQLGLTF++E G P+ G + WQFNF+ FNL
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNL 103
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 51/79 (64%), Positives = 62/79 (78%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPT 91
LK+IQLGLTF++E G P+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS 90
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 48/99 (48%), Positives = 71/99 (71%)
Query: 171 LLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGIC 230
++KLLT LP+ + FF ++N++FP +YD+K+LMK C +L GGL ++A+ L+++R+G
Sbjct: 1 MVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQ 60
Query: 231 HQAGSDSLLTSCTFRKLRENFFNGCTE--KYAGVLYGLG 267
HQAGSDSLLT F +++E FF + KY G LYGLG
Sbjct: 61 HQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 99
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 43/84 (51%), Positives = 65/84 (77%)
Query: 113 IFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLL 172
+++ DS++LL G+ F+K+ E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 173 KLLTCRSLPDTQAGFFELINMYFP 196
KLLT LP+ + FF ++N++FP
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFP 84
>UNIPROTKB|H0YBT3 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000518541 Uniprot:H0YBT3
Length = 91
Score = 164 (62.8 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 165 GYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSL 211
GYDFGYL+K+LT +LP+ + FFE++ ++FPV+YD+K+LMK C +L
Sbjct: 2 GYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL 48
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 159 (61.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFK 56
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR 55
>UNIPROTKB|E5RJE0 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01009372 ProteinModelPortal:E5RJE0 SMR:E5RJE0
Ensembl:ENST00000520178 ArrayExpress:E5RJE0 Bgee:E5RJE0
Uniprot:E5RJE0
Length = 41
Score = 99 (39.9 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDT 42
+I EVW NL+EE IR+++ KYNY+AMDT
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDT 41
>UNIPROTKB|E9PU60 [details] [associations]
symbol:Pnldc1 "Protein Pnldc1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 IPI:IPI00365411
Ensembl:ENSRNOT00000060412 Uniprot:E9PU60
Length = 531
Score = 105 (42.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 35/135 (25%), Positives = 67/135 (49%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGV---VLRP--VGAFKNINDYNYQTLKDN 69
+V D E+ ++E+V +++ +D EF G+ + RP + F +++ +T + +
Sbjct: 2 DVGADEFEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKT-RQS 60
Query: 70 VDMLKLIQLGLT-FSDENGNLPTCGTDKFCIWQFNF----REFNLIDDIFA--SDSVELL 122
V + Q+GL+ FS G ++K+ NF F ++D F+ + SV+ L
Sbjct: 61 VQQFTICQIGLSMFSSVEGE-----SNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFL 115
Query: 123 HQCGIDFKKNNEKGI 137
+Q G D+ K + GI
Sbjct: 116 NQYGFDYNKFLKNGI 130
Score = 52 (23.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 178 RSLPDTQAGFFELINMYFPVVYDIKHLMK-FCNSLH-GGLNKLAELLEV 224
R LP++ F + I+ FPV+ D K++ K L ++ L+E+ EV
Sbjct: 281 RPLPESYDQFKQNIHSLFPVLIDTKNVTKDIWKELRFPRVSNLSEVYEV 329
>POMBASE|SPBC29A10.09c [details] [associations]
symbol:SPBC29A10.09c "CAF1 family ribonuclease
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003676
"nucleic acid binding" evidence=ISM] [GO:0003723 "RNA binding"
evidence=IC] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006402 "mRNA catabolic
process" evidence=ISM] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 PomBase:SPBC29A10.09c GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004540
HSSP:O95453 eggNOG:NOG145331 PIR:T40064 RefSeq:NP_596054.1
ProteinModelPortal:O94386 EnsemblFungi:SPBC29A10.09c.1
GeneID:2540515 KEGG:spo:SPBC29A10.09c OMA:ASIDHIC OrthoDB:EOG4DZ542
NextBio:20801642 Uniprot:O94386
Length = 427
Score = 100 (40.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAF-KNINDYNYQTLKDNVDML 73
E+ N E + + VD +Y+++D EF G+ LR KN Y+ L+ +
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGL-LRDFNLNNKNTLQDRYELLRKSSIRY 60
Query: 74 KLIQLGLTFSD-ENGNLPTCGTDKFCIWQFNFREFNLIDDIFASD--SVELLHQCGIDFK 130
++Q+G+TF +N +C + E +L D F S+ S++ L Q G DF
Sbjct: 61 TILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRD-FCSEASSIKFLIQQGFDFN 119
Query: 131 KNNEKGI 137
K +G+
Sbjct: 120 KQLTEGV 126
Score = 53 (23.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 160 VTFHSGY-DFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHL 204
V H+G D YL L + +P+T F EL F +YD K L
Sbjct: 276 VVCHNGMADLVYLFSLFEGK-VPETILEFSELCLSSFKSIYDTKLL 320
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.142 0.437 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 274 274 0.00078 115 3 11 22 0.46 33
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 55
No. of states in DFA: 604 (64 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.22u 0.13s 23.35t Elapsed: 00:00:01
Total cpu time: 23.22u 0.13s 23.35t Elapsed: 00:00:02
Start: Sat May 11 05:01:05 2013 End: Sat May 11 05:01:07 2013