BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023967
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/265 (78%), Positives = 235/265 (88%), Gaps = 1/265 (0%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKD 68
D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK +Y+Y+TLK
Sbjct: 8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKT 67
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSVELLHQCGI 127
NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L DI+A+DS+ELL Q GI
Sbjct: 68 NVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGI 127
Query: 128 DFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGF 187
DF KNNE GID RF ELLMSSGIVLN+ V WVTFHSGYDFGYLLKLLTC++LP+TQ GF
Sbjct: 128 DFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGF 187
Query: 188 FELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKL 247
FE+I++YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLLTSCTFRKL
Sbjct: 188 FEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKL 247
Query: 248 RENFFNGCTEKYAGVLYGLGVENDK 272
+ENFF G EKY+GVLYGLGVEN +
Sbjct: 248 QENFFIGSMEKYSGVLYGLGVENGQ 272
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/262 (78%), Positives = 230/262 (87%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKD 68
D IQIREVWNDNL+EE LIR++VD + Y+AMDTEFPG+V+RPVG FK+ DY+Y+TLK
Sbjct: 8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKT 67
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGID 128
NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF+L DIFA DS+ELL Q GID
Sbjct: 68 NVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 127
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
KN GID RF ELLMSSGIVLN+ V WVTFHSGYDFGYLLKLLTC++LPD+Q FF
Sbjct: 128 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 187
Query: 189 ELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLR 248
+LIN+YFP VYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKL+
Sbjct: 188 KLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 247
Query: 249 ENFFNGCTEKYAGVLYGLGVEN 270
ENFF G KY+GVLYGLGVEN
Sbjct: 248 ENFFVGPLHKYSGVLYGLGVEN 269
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/266 (77%), Positives = 231/266 (86%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKD 68
D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV FK ND NY+TLK+
Sbjct: 8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKE 67
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGID 128
NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL QCGID
Sbjct: 68 NVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188
FKKN EKGIDV RFGEL+MSSGIVLND + WVTFH GYDFGYL+KLLTC+ LP QA FF
Sbjct: 128 FKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFF 187
Query: 189 ELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLR 248
+L+ +YFP VYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT +FRKL+
Sbjct: 188 KLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLK 247
Query: 249 ENFFNGCTEKYAGVLYGLGVENDKTN 274
E +F G TEKY GVLYGLGVE+ T
Sbjct: 248 ERYFPGSTEKYTGVLYGLGVEDGTTT 273
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 344 bits (883), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 204/264 (77%), Gaps = 6/264 (2%)
Query: 9 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYN 62
D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A N N +YN
Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71
Query: 63 YQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 122
Y TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL
Sbjct: 72 YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131
Query: 123 HQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPD 182
+ ID +KNNE G+D RF ELLM SG+VLND + WVTFH GYDFGYLLKLL+ + LP+
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191
Query: 183 TQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSC 242
+ FF+ + +FPVVYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251
Query: 243 TFRKLRENFFNGCTEKYAGVLYGL 266
TF K++E FF G KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/258 (56%), Positives = 193/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/258 (56%), Positives = 193/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/258 (56%), Positives = 193/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/258 (56%), Positives = 193/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 298 bits (762), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/258 (56%), Positives = 191/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NLEEE IR++ K+NYIAMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F ELLM+SG+VL + V+W++FHSGYDFGYL+K+L+ LPD + FFE++
Sbjct: 126 HEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FP++YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/258 (55%), Positives = 192/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+++ IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F EL M+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/258 (55%), Positives = 192/258 (74%), Gaps = 7/258 (2%)
Query: 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVD 71
+I EVW NL+++ IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD
Sbjct: 11 RICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 72 MLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKK 131
+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK
Sbjct: 71 LLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKK 125
Query: 132 NNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
+ E+GI+ F EL M+SG+VL + V+W++FHSGYDFGYL+K+LT +LP+ + FFE++
Sbjct: 126 HEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEIL 185
Query: 192 NMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
++FPV+YD+K+LMK C +L GGL ++AE LE++R+G HQAGSDSLLT F K+RE F
Sbjct: 186 RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 252 FNGCTE--KYAGVLYGLG 267
F + KY G LYGLG
Sbjct: 246 FEDHIDDAKYCGHLYGLG 263
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 288 bits (738), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 190/258 (73%), Gaps = 7/258 (2%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS----GINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLGV 268
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLGT 264
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 288 bits (736), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 190/258 (73%), Gaps = 7/258 (2%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
I EVW NLEEE IREIV Y+YIAMDTEFPGVV+RP+G F++ DY YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQLGLTF++E G P+ WQFNF+ FNL +D+++ DS++LL G+ F+K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS----GINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E+GID F ELLM+SG+VL D V+W++FHSGYDFGY++KLLT LP+ + FF ++N
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
++FP +YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +++E FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 253 NGCTE--KYAGVLYGLGV 268
+ KY G LYGLG
Sbjct: 247 EDSIDDAKYCGRLYGLGT 264
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 270 bits (691), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/271 (53%), Positives = 185/271 (68%), Gaps = 7/271 (2%)
Query: 4 LPKGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNY 63
L G + REVW +NLE EF LI EI+D Y +I+MDTEFPGV+ + F N +D Y
Sbjct: 10 LKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-Y 68
Query: 64 QTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD--KFCIWQFNFREFNLIDDIFASDSVEL 121
LK NVD L LIQ+GLT SD NGNLP G D + IW+FNFR+F++ D A DS+EL
Sbjct: 69 TLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIEL 128
Query: 122 LHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLP 181
L + GIDF++N G++ RF EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT R LP
Sbjct: 129 LRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELP 188
Query: 182 DTQAGFFELINMYF-PVVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSL 238
F ++ + F VYD+KH+MKFC L GGL+++A LEV R VG CHQAGSDSL
Sbjct: 189 GALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSL 248
Query: 239 LTSCTFRKLRENFF-NGCTEKYAGVLYGLGV 268
LT F+++R+ +F EK+AGVLYGL V
Sbjct: 249 LTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 180/256 (70%), Gaps = 6/256 (2%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
IR+VW+ NL++E LI ++++Y ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
LK+IQ+GL SDE GN P + C WQFNF FNL DD++A +S+ELL + GIDFKK+
Sbjct: 85 LKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKH 139
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
E GI+ F ELL+ SG+VL + V W+TFHSGYDF YLLK +T LP F++++
Sbjct: 140 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 199
Query: 193 MYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252
+YFP YDIK++MK + GL +A+ L++ R+G HQAGSD+LLT+ F ++R +F
Sbjct: 200 IYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 259
Query: 253 NGCTE-KYAGVLYGLG 267
+G + + LYGLG
Sbjct: 260 DGSIDSRMLNQLYGLG 275
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 264 bits (675), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 186/269 (69%), Gaps = 8/269 (2%)
Query: 8 GDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRP-VGAFKNIN-DYNYQT 65
D I IR+VW NLE EF LIR IV+ Y +I+MDTEFPGV+ + + + N +Y Y
Sbjct: 9 SDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNL 68
Query: 66 LKDNVDMLKLIQLGLTFSDENGNLPTCGTDK--FCIWQFNFREFNLIDDIFASDSVELLH 123
LK NVD L LIQ+GLT SD +GNLP G K IW+FNFR+F++ D A DS+ELL
Sbjct: 69 LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 128
Query: 124 QCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDT 183
+ GIDF++N +G++ RF EL+MSSG++ N+ V WVTFHS YDFGYL+K+LT R LP
Sbjct: 129 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 188
Query: 184 QAGFFELINMYF-PVVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLT 240
F L+ +F VYD+KH+M+FC L+GGL+++A LEV R VG CHQAGSDSLLT
Sbjct: 189 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 248
Query: 241 SCTFRKLRENFF-NGCTEKYAGVLYGLGV 268
F+++R+ +F EK+AGVLYGL V
Sbjct: 249 WQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 170/266 (63%), Gaps = 13/266 (4%)
Query: 10 EIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDN 69
E++I V+ N+EEEFA IR V+ Y Y+AMDTEFPGVV P+G F++ D+NYQ + N
Sbjct: 20 EVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCN 79
Query: 70 VDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDF 129
V+MLKLIQ+G ++ G LP G +WQFNF F+ +D+F+ +SVE+L Q GIDF
Sbjct: 80 VNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDF 134
Query: 130 KKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFE 189
GI FGELL +SG++ + + W+TF SGYDFGYLLK +T LP ++ FF
Sbjct: 135 TLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFM 194
Query: 190 LINMYFPVVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFR 245
FP +DIK L++ N L GGL ++A+ L+V+R G+ HQAGSD+LLT+ TF
Sbjct: 195 CHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFF 254
Query: 246 KLRENFF----NGCTEKYAGVLYGLG 267
K+++ FF N G ++GLG
Sbjct: 255 KIKKQFFGDNWNQIAPLICGHMFGLG 280
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 160/274 (58%), Gaps = 24/274 (8%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDM 72
+R+VW NL EFA+IR++V +YN++++ TEF G + RP+G F++ DY+YQT++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 73 LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKN 132
L IQLGL+ SD NGN P G WQFNF EF+ +I +++S+ELL + GI+F+K+
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGP---STWQFNF-EFDPKKEIMSTESLELLRKSGINFEKH 275
Query: 133 NEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIN 192
GIDV F +LLM SG++++D V W+T+H+ YD G+L+ +L S+P+ + F ++
Sbjct: 276 ENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVH 335
Query: 193 MYFPVVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQAGSDS 237
Y P YD+ + K L LA+ L + R I G S
Sbjct: 336 QYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQS 395
Query: 238 ---LLTSCTFRKLRENFFNGCTE--KYAGVLYGL 266
LL+ C KL + F T+ KY GV+YG+
Sbjct: 396 LLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 140/261 (53%), Gaps = 16/261 (6%)
Query: 14 REVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDML 73
R VW N++EE A + E + ++ IA DTE+PG++ R F + +D Y+ +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNN 133
KLIQ G T + G + +W+ NF F D S+E L + G+D +K
Sbjct: 68 KLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR 120
Query: 134 EKGIDVNRFG--ELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELI 191
++G+D+ +G LM+ V +VTF YDF Y L +L LP+T F +
Sbjct: 121 DEGVDMFGYGFFPKLMTV-FRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEV 179
Query: 192 NMYFPVVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRE 249
F VYD K + FC L H GL+KLA+LL++ RVG H AGSDSL+T+ F KL+
Sbjct: 180 VKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKH 239
Query: 250 NFFNGCTEKYAGVLYGLGVEN 270
+ + + G++YG+G N
Sbjct: 240 VYEDSRFAR--GLIYGIGKSN 258
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 124/250 (49%), Gaps = 22/250 (8%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKDNVDML 73
EVW N + E IR+ + N IA+DTEFPG + P+ A I Y+ +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIR---YRDMKFNVDNT 60
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNN 133
LIQLGLT G W+ N +FN + S+ L G+D K
Sbjct: 61 HLIQLGLTL---------FGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIR 111
Query: 134 EKGIDVNRFGELLMSSGIVLNDV---VRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFEL 190
E+GI + F M +LN+ +RWVTF YD YLLK LT + LP+T F E
Sbjct: 112 EEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDET 168
Query: 191 INMYF-PVVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKL 247
+ VYD+K + C+ L GL ++A++L++ RVG H AGSDS LT+ F KL
Sbjct: 169 VQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
Query: 248 RENFFNGCTE 257
+ N E
Sbjct: 229 IFDLVNSRKE 238
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 12/228 (5%)
Query: 26 ALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE 85
+LI + + Y +IA+DTEFP LR ++ Y + +VD KLIQLGLT D
Sbjct: 2 SLIEDCLRSYRFIAIDTEFPST-LRETTQHAT-DEERYMDMSFSVDRAKLIQLGLTLFDI 59
Query: 86 NGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGEL 145
NG + GT W+ NF +F +DD S+E L + G+D +K E+GI + F
Sbjct: 60 NGRI--GGT-----WEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSE 111
Query: 146 LMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLM 205
+ + WVTFH YD YLLK T +LP T F + + VYD+K +
Sbjct: 112 MFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMA 171
Query: 206 KFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251
C L GL LA + RVG H AGS++ LT+ F K+ F
Sbjct: 172 GRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 124/249 (49%), Gaps = 16/249 (6%)
Query: 10 EIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKD 68
+I EVW N E E IR+ + + IA+DTEFPG + P+ A + I Y+ +K
Sbjct: 3 QISSGEVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIR---YRDMKF 59
Query: 69 NVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGID 128
NVD LIQLG T D G T W+ N +F+ S+ L G++
Sbjct: 60 NVDNTHLIQLGFTLFDRRGFAKT--------WEINLSDFDEHKCFKNDKSIAFLKSNGLN 111
Query: 129 FKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTC-RSLPDTQAGF 187
K E+GI ++ F + + WV F YD YL+K LT + LP+T+ F
Sbjct: 112 LDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 171
Query: 188 FELINMYF-PVVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTF 244
E + V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LT+ F
Sbjct: 172 HETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVF 231
Query: 245 RKLRENFFN 253
KL + N
Sbjct: 232 TKLTFDLLN 240
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 16/244 (6%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLR-PVGAFKNINDYNYQTLKDNVDML 73
EVW N E E IR+ + ++ IA+DTEFPG + P+ A + I Y+ +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIR---YRDMKFNVDNT 59
Query: 74 KLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNN 133
LIQLG T D G T W+ N +FN S+ L G++ K
Sbjct: 60 HLIQLGFTLFDRRGITKT--------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIG 111
Query: 134 EKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTC-RSLPDTQAGFFELIN 192
E+GI + F + + WV F YD YL+K LT + LP+T+ F E +
Sbjct: 112 EEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVE 171
Query: 193 MYF-PVVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRE 249
V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LT+ F KL
Sbjct: 172 QLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTF 231
Query: 250 NFFN 253
+ N
Sbjct: 232 DLLN 235
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLK 74
E+ N E + + VD +Y+++D EF G++ ++ N N TL+D ++L+
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLL-------RDFNLNNKNTLQDRYELLR 54
Query: 75 -------LIQLGLTFSD-ENGNLPTCGTDKFCIWQFNFREFNLIDDIFA-SDSVELLHQC 125
++Q+G+TF +N +C + E +L D + + S++ L Q
Sbjct: 55 KSSIRYTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQ 114
Query: 126 GIDFKKNNEKGI 137
G DF K +G+
Sbjct: 115 GFDFNKQLTEGV 126
>sp|A1BF33|NUOB_CHLPD NADH-quinone oxidoreductase subunit B OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=nuoB PE=3 SV=1
Length = 189
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 122 LHQCGIDFKKNNEKGIDVNRFG----------ELLMSSGIVLNDVVRWVT--FHSGYDFG 169
L C I+ N D+ RFG +L++ +G V + V + +
Sbjct: 37 LACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMLVAGTVSMKMAERVVRLYEQMPEPR 96
Query: 170 YLLKLLTCRSL--PDTQAGFFEL--INMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVE 225
Y+L + +C + P + G+ L ++ PV + SL GGL K+ EL+ +E
Sbjct: 97 YVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPESLIGGLMKVQELIRME 156
Query: 226 RVGI 229
++GI
Sbjct: 157 QIGI 160
>sp|Q3ASW7|NUOB_CHLCH NADH-quinone oxidoreductase subunit B OS=Chlorobium chlorochromatii
(strain CaD3) GN=nuoB PE=3 SV=1
Length = 190
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 125 CGIDFKKNNEKGIDVNRFG----------ELLMSSGIVLNDVVRWVT--FHSGYDFGYLL 172
C I+ N D+ RFG +L++ +G V + V + + Y+L
Sbjct: 40 CAIEMMATNASNYDLERFGIFPRSSPRQSDLMLVAGTVTMKMAERVIRLYEQMPEPRYVL 99
Query: 173 KLLTCRSL--PDTQAGFFEL--INMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVG 228
+ +C + P + G+ L ++ PV + SL GGL K+ EL+ +E++G
Sbjct: 100 SMGSCSNSGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPESLIGGLMKVQELIRMEQIG 159
Query: 229 ICHQAGSDSLLTSCTFRKLREN 250
+ +D+L +KL EN
Sbjct: 160 LSR---ADAL------KKLAEN 172
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 28/194 (14%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRP-VGAFKN---INDYNYQTLKDNV 70
E+ N ++ + + +++ +++A+D EF G+ P V N + Y LK +
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61
Query: 71 DMLKLIQLGL-TFSDENGNLPTCGTDKFCIWQFNFREF------NLIDDIFA--SDSVEL 121
L Q GL TF+ +N K+ + FNF F N D F S S++
Sbjct: 62 MEFLLFQFGLCTFNYDNTEA------KYLMKSFNFYIFPKPFNRNSPDKKFVCQSSSIDF 115
Query: 122 LHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVV--RWVTFHSGYDFGYLLK--LLTC 177
L G DF K GI L VL D R + Y+ T
Sbjct: 116 LANQGFDFNKVFRNGIPY-----LNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTP 170
Query: 178 RSLPDTQAGFFELI 191
S+PD Q GF + +
Sbjct: 171 VSIPDEQKGFIDKV 184
>sp|B3EI94|NUOB_CHLL2 NADH-quinone oxidoreductase subunit B OS=Chlorobium limicola
(strain DSM 245 / NBRC 103803) GN=nuoB PE=3 SV=1
Length = 189
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 125 CGIDFKKNNEKGIDVNRFG----------ELLMSSGIVLNDVVRWVT--FHSGYDFGYLL 172
C I+ N D+ RFG +L++ +G V + V + + Y+L
Sbjct: 40 CAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVL 99
Query: 173 KLLTCRSL--PDTQAGFFEL--INMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVG 228
+ +C + P + G+ L ++ PV + SL GGL K+ EL+ +E++G
Sbjct: 100 SMGSCSNCGGPYWEHGYHVLKGVDRVIPVDVYVPGCPPRPESLIGGLMKVQELIRMEQIG 159
Query: 229 I 229
+
Sbjct: 160 L 160
>sp|Q17QN2|TOE1_BOVIN Target of EGR1 protein 1 OS=Bos taurus GN=TOE1 PE=2 SV=1
Length = 524
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 33/181 (18%)
Query: 18 NDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQ 77
+DN +E + + + N++A+DTE G+ R + I + Y+ + ++
Sbjct: 41 SDNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKCLLNQCIEE-RYKAVCHAARTRSILS 99
Query: 78 LGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGI 137
LGL + P G + FN + + + SV+ L Q G +F + +GI
Sbjct: 100 LGLACFKQQ---PDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGI 156
Query: 138 DVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPV 197
+H G D G + + R+L F ELI P+
Sbjct: 157 -----------------------PYHKGNDKGDESQRQSVRTL------FLELIRARRPL 187
Query: 198 V 198
V
Sbjct: 188 V 188
>sp|Q5RAR6|TOE1_PONAB Target of EGR1 protein 1 OS=Pongo abelii GN=TOE1 PE=2 SV=1
Length = 510
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 15/200 (7%)
Query: 18 NDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQ 77
++N E + + + N++A+DTE G+ R ++ Y+ + ++
Sbjct: 41 SNNFREMWPSLLLAIKTANFVAVDTELSGLGDR-KSLLNQCSEERYKAVCHAARTRSILS 99
Query: 78 LGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGI 137
LGL P G + FN + + + SV+ L Q G +F + +GI
Sbjct: 100 LGLACFKRQ---PDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLIQHGFNFNQQYAQGI 156
Query: 138 DV---NRFGELLMSSGIV-----LNDVVRWVTFHSGY-DFGYLLKLLTCRSLPDTQAGFF 188
N G+ S + L R + H+G D +L + LP++ F
Sbjct: 157 PYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAH-LPESLGTFT 215
Query: 189 ELINMYFPV-VYDIKHLMKF 207
+ FP +YD K+ +F
Sbjct: 216 ADLCEMFPAGIYDTKYAAEF 235
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYN--YQTLKDNV 70
++ V N E +R +V +++A+D E GV P + Y+ Y +KD+
Sbjct: 38 LKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSA 97
Query: 71 DMLKLIQLGL 80
+ ++Q G+
Sbjct: 98 EKFAVVQFGV 107
>sp|P81333|YC9A_METJA Uncharacterized protein MJ1292.1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1292.1 PE=4 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 65 TLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVE 120
+LK V LK I++ + DENG L C K N+R+ NL +I +DS+E
Sbjct: 57 SLKSAVPDLKDIEIWASAMDENGRLINCSKKKTIDIYGNYRKVNL--EILFNDSLE 110
>sp|Q96GM8|TOE1_HUMAN Target of EGR1 protein 1 OS=Homo sapiens GN=TOE1 PE=1 SV=1
Length = 510
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 15/200 (7%)
Query: 18 NDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQ 77
++N +E + + + N++A+DTE G+ R + I + Y+ + ++
Sbjct: 41 SNNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKSLLNQCIEE-RYKAVCHAARTRSILS 99
Query: 78 LGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGI 137
LGL P G + FN + + + SV+ L Q G +F + +GI
Sbjct: 100 LGLACFKRQ---PDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLIQHGFNFNQQYAQGI 156
Query: 138 DV---NRFGELLMSSGIV-----LNDVVRWVTFHSGY-DFGYLLKLLTCRSLPDTQAGFF 188
N G+ S + L R + H+G D +L + LP++ F
Sbjct: 157 PYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAH-LPESLGTFT 215
Query: 189 ELINMYFPV-VYDIKHLMKF 207
+ FP +YD K+ +F
Sbjct: 216 ADLCEMFPAGIYDTKYAAEF 235
>sp|Q9D2E2|TOE1_MOUSE Target of EGR1 protein 1 OS=Mus musculus GN=Toe1 PE=2 SV=1
Length = 511
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 18 NDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQ 77
+DN +E + + + +++A+DTE G+ R + I + Y+ + ++
Sbjct: 41 SDNFKEIWPSLLLALKTASFVAVDTELSGLGDRKSLLNQCIEE-RYKAVCHAARTRSVLS 99
Query: 78 LGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGI 137
LGL + P G + + FN + + + SV+ L Q G +F + +GI
Sbjct: 100 LGLACFRQQ---PDKGENSYLAQVFNLTLLCIEEYVIEPKSVQFLVQHGFNFNRQYAQGI 156
Query: 138 DV---NRFGELLMSSGIV-----LNDVVRWVTFHSGY-DFGYLLKLLTCRSLPDTQAGFF 188
N G+ S + L R + H+G D +L + LP+ F
Sbjct: 157 PYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAH-LPENLGTFT 215
Query: 189 ELINMYFPV-VYDIKHLMKF 207
+ FP +YD K+ +F
Sbjct: 216 ADLCEMFPAGIYDTKYAAEF 235
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 15 EVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRP-VGAFKN---INDYNYQTLKDNV 70
E+ N + + + +++ ++ A+D EF G+ P V A N + YQ LK +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 71 DMLKLIQLGL-TFSDENGNLPTCGTDKFCIWQFNF----REFNL----IDDIFASDSVEL 121
L Q GL TF + + K+ FNF + FN + + S S++
Sbjct: 62 MDFLLFQFGLCTFKYDYTD------SKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDF 115
Query: 122 LHQCGIDFKKNNEKGI 137
L G DF K GI
Sbjct: 116 LASQGFDFNKVFRNGI 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,949,317
Number of Sequences: 539616
Number of extensions: 4871638
Number of successful extensions: 9522
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9433
Number of HSP's gapped (non-prelim): 41
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)