Query 023967
Match_columns 274
No_of_seqs 138 out of 503
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 1.1E-91 3.9E-96 642.1 22.0 264 1-270 1-266 (285)
2 2d5r_A CCR4-NOT transcription 100.0 2.9E-90 9.9E-95 622.6 22.1 250 12-266 1-252 (252)
3 1uoc_A POP2; hydrolase, DEDD n 100.0 4.5E-90 1.6E-94 631.1 23.2 259 8-270 11-289 (289)
4 2p51_A SPCC18.06C protein; DED 100.0 6.7E-90 2.3E-94 637.6 23.6 259 6-269 16-275 (333)
5 3d45_A Poly(A)-specific ribonu 100.0 1.9E-62 6.6E-67 481.0 21.5 234 13-252 2-393 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 7.6E-54 2.6E-58 412.6 18.9 233 14-252 1-398 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.9 4.3E-08 1.5E-12 85.9 15.0 186 24-252 26-222 (235)
8 1w0h_A 3'-5' exonuclease ERI1; 98.8 1.3E-07 4.5E-12 80.7 15.2 174 36-252 11-196 (204)
9 2f96_A Ribonuclease T; RNAse, 98.8 1.9E-07 6.4E-12 81.3 15.0 183 28-252 22-214 (224)
10 2gui_A DNA polymerase III epsi 98.7 3.2E-07 1.1E-11 77.8 13.7 172 35-250 9-184 (194)
11 1zbh_A 3'-5' exonuclease ERI1; 98.6 1.2E-06 4.2E-11 79.8 17.4 175 35-252 78-264 (299)
12 2p1j_A POLIII, DNA polymerase 98.6 8.5E-07 2.9E-11 75.0 14.2 164 32-250 9-175 (186)
13 2xri_A ERI1 exoribonuclease 3; 98.6 2.3E-06 7.8E-11 74.6 16.6 171 36-251 32-214 (224)
14 3cg7_A CRN-4, cell death-relat 98.6 1.8E-06 6.2E-11 79.2 16.0 174 36-252 20-210 (308)
15 3mxm_B Three prime repair exon 98.5 1.3E-06 4.5E-11 77.3 12.4 178 35-252 12-216 (242)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.5 2.5E-06 8.6E-11 79.7 14.4 176 35-252 128-314 (349)
17 1y97_A Three prime repair exon 98.4 3.1E-06 1.1E-10 73.9 13.3 178 35-252 10-211 (238)
18 1wlj_A Interferon stimulated g 98.3 3.8E-06 1.3E-10 71.3 10.6 159 34-253 4-171 (189)
19 3u3y_B Three prime repair exon 98.3 1.1E-05 3.6E-10 74.5 13.7 177 36-252 13-216 (314)
20 2qxf_A Exodeoxyribonuclease I; 98.3 8.4E-06 2.9E-10 79.2 13.0 175 32-250 6-200 (482)
21 2igi_A Oligoribonuclease; RNAs 98.0 7.8E-05 2.7E-09 62.2 13.1 169 34-252 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 97.6 0.00039 1.3E-08 59.0 11.0 170 33-252 7-182 (194)
23 3tr8_A Oligoribonuclease; tran 97.1 0.01 3.6E-07 50.3 13.6 169 33-253 7-183 (186)
24 2kfn_A Klenow fragment of DNA 96.2 0.11 3.7E-06 51.4 15.2 85 152-252 86-194 (605)
25 2hbj_A Exosome complex exonucl 65.2 16 0.00055 34.1 7.6 85 153-253 156-256 (410)
26 1yt3_A Ribonuclease D, RNAse D 58.2 25 0.00086 32.1 7.4 84 153-252 71-171 (375)
27 3saf_A Exosome component 10; e 52.1 30 0.001 32.6 6.9 84 153-252 179-278 (428)
28 2e6m_A Werner syndrome ATP-dep 40.7 37 0.0013 27.8 5.1 84 153-252 93-196 (208)
29 2ogf_A Hypothetical protein MJ 35.4 14 0.00049 28.9 1.5 46 160-205 23-72 (122)
30 4i4d_A Peptide synthetase NRPS 35.0 48 0.0016 23.5 4.3 35 218-252 25-62 (93)
31 1vk0_A Hypothetical protein; h 34.2 64 0.0022 27.0 5.6 82 152-249 104-205 (206)
32 2i52_A Hypothetical protein; s 32.7 17 0.00058 28.5 1.5 45 161-205 19-67 (121)
33 1dny_A Non-ribosomal peptide s 30.8 50 0.0017 23.5 3.8 34 218-251 23-59 (91)
34 3pv8_A DNA polymerase I; DNA p 25.2 1.3E+02 0.0045 29.4 6.8 84 153-252 78-182 (592)
35 4dfk_A DNA polymerase I, therm 24.0 83 0.0029 30.4 5.0 51 197-251 77-128 (540)
36 4g3h_A Arginase (ROCF); rossma 22.5 1.5E+02 0.0052 26.5 6.2 65 14-81 206-280 (330)
37 2fi0_A Conserved domain protei 22.0 62 0.0021 22.9 2.8 37 115-151 22-75 (81)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-91 Score=642.05 Aligned_cols=264 Identities=55% Similarity=1.004 Sum_probs=247.6
Q ss_pred CCCCCCCCCcceEEEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeee
Q 023967 1 MSVLPKGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGL 80 (274)
Q Consensus 1 ~~~~~~~~~~~~i~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGl 80 (274)
||+++. ....+|||||++||++||+.|+++|++|+||||||||||++.+|.+.+++++|+||+++|+|||.+++||+||
T Consensus 1 ~p~~~~-~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGL 79 (285)
T 4gmj_B 1 MPAATV-DHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGL 79 (285)
T ss_dssp ----------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCcC-CCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEE
Confidence 888886 4577899999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCeeeEEEeeeccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEE
Q 023967 81 TFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWV 160 (274)
Q Consensus 81 t~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi 160 (274)
|+++++|+.|. .+++|||||+ |+..+|+|+++||+||++|||||||++++||++.+|+|++++||++++++++||
T Consensus 80 t~f~~~g~~p~----~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~Wv 154 (285)
T 4gmj_B 80 TFMNEQGEYPP----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWL 154 (285)
T ss_dssp EEECTTSCCCS----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEE
T ss_pred EeeccCCCcCC----CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceE
Confidence 99999999885 5899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHH
Q 023967 161 TFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT 240 (274)
Q Consensus 161 ~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT 240 (274)
+|||+|||+||+|+|++++||+++.+|+++++.+||.|||||||++.|.++++||++||+.|+|+|+|++||||||||||
T Consensus 155 tfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT 234 (285)
T 4gmj_B 155 SFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLT 234 (285)
T ss_dssp ESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHH
T ss_pred EecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC--ccccccEEEecCCCC
Q 023967 241 SCTFRKLRENFFNGC--TEKYAGVLYGLGVEN 270 (274)
Q Consensus 241 ~~~F~~l~~~~~~~~--~~~~~g~i~Gl~~~~ 270 (274)
++||+||+++|+++. ..+|+|+|||||...
T Consensus 235 ~~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~~ 266 (285)
T 4gmj_B 235 GMAFFKMREMFFEDHIDDAKYCGHLYGLGSGS 266 (285)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTTCCTTSSTTC
T ss_pred HHHHHHHHHHHhcCCcchHHhCCEEeccCCCC
Confidence 999999999999764 468999999999753
No 2
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=2.9e-90 Score=622.60 Aligned_cols=250 Identities=58% Similarity=1.051 Sum_probs=243.0
Q ss_pred eEEEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCC
Q 023967 12 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPT 91 (274)
Q Consensus 12 ~i~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~ 91 (274)
.|||||++||++||+.|+++|++|+||||||||||++.+|.+.+++++++|||++|+|||.++|||+|||+++++|+.|.
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~ 80 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCC
Confidence 48999999999999999999999999999999999999998888889999999999999999999999999999999885
Q ss_pred CCCCCeeeEEEeeeccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccchhHHHH
Q 023967 92 CGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYL 171 (274)
Q Consensus 92 ~~~~~~~~~~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~yD~~yL 171 (274)
.+++|||||+ |+..+|+|+++||+||+++||||||+.++||++.+|+|+|++|||+++++|+||+|||+|||+||
T Consensus 81 ----~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL 155 (252)
T 2d5r_A 81 ----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 155 (252)
T ss_dssp ----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHH
T ss_pred ----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHH
Confidence 5899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHh
Q 023967 172 LKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251 (274)
Q Consensus 172 lk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~ 251 (274)
+|+|++++||+++++|++.++.+||++||||||++.|.++++||++||+.|+++|+|++|||||||++|++||+||++.+
T Consensus 156 ~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 156 IKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ccccccEEEec
Q 023967 252 FNGC--TEKYAGVLYGL 266 (274)
Q Consensus 252 ~~~~--~~~~~g~i~Gl 266 (274)
+++. .++++|+||||
T Consensus 236 f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 236 FEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp SCSSCCHHHHTTBCTTC
T ss_pred cCCCCCHHHcCCEecCC
Confidence 9763 46999999997
No 3
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=4.5e-90 Score=631.07 Aligned_cols=259 Identities=40% Similarity=0.771 Sum_probs=238.0
Q ss_pred CCcceEEEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCC
Q 023967 8 GDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENG 87 (274)
Q Consensus 8 ~~~~~i~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g 87 (274)
+..+.|||||++||++||+.|+++|++|+||||||||||++.+|.+.+++++++||+++|+|||.++|||+|||+++++|
T Consensus 11 ~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g 90 (289)
T 1uoc_A 11 PNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANG 90 (289)
T ss_dssp GGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTC
T ss_pred CCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCC
Confidence 45689999999999999999999999999999999999999999888887889999999999999999999999999999
Q ss_pred CCCCCCCCCeeeEEEeeeccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccchh
Q 023967 88 NLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYD 167 (274)
Q Consensus 88 ~~p~~~~~~~~~~~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~yD 167 (274)
+.|.. .+++|||||+ |+..+|+|+++||+||+++||||||+.++||+|.+|+|+|++||||++++|+||+|||+||
T Consensus 91 ~~p~~---~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yD 166 (289)
T 1uoc_A 91 NKPDN---GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYD 166 (289)
T ss_dssp CCCSS---SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHH
T ss_pred CcCCC---CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcch
Confidence 98852 4899999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccc---------------cHHHHHHHcCCccCCCCcc
Q 023967 168 FGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQ 232 (274)
Q Consensus 168 ~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~---------------~L~~la~~L~v~r~g~~Hq 232 (274)
||||+|+|++++||+++++|++.++.+||+|||+|||++.|.++++ ||++||+.|||+|+|.+||
T Consensus 167 fgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~Hq 246 (289)
T 1uoc_A 167 LGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTT 246 (289)
T ss_dssp HHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGS
T ss_pred HHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccc
Confidence 9999999999999999999999999999999999999999987765 7999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHhcC----C-CccccccEEEecCCCC
Q 023967 233 AGSDSLLTSCTFRKLRENFFN----G-CTEKYAGVLYGLGVEN 270 (274)
Q Consensus 233 AGsDs~lT~~~F~~l~~~~~~----~-~~~~~~g~i~Gl~~~~ 270 (274)
|||||++|++||+||++.++. + +.++++|+|||||.++
T Consensus 247 AGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~~ 289 (289)
T 1uoc_A 247 TGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGDQ 289 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCCC
Confidence 999999999999999999873 2 4679999999999864
No 4
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=6.7e-90 Score=637.59 Aligned_cols=259 Identities=50% Similarity=0.913 Sum_probs=247.6
Q ss_pred CCCCcceEEEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC
Q 023967 6 KGGDEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE 85 (274)
Q Consensus 6 ~~~~~~~i~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~ 85 (274)
.+...+.|||||++||++||+.|+++|++|+||||||||||++.+|.+.++++.|+|||++|+|||.++|||+|||++++
T Consensus 16 ~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~ 95 (333)
T 2p51_A 16 ISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDE 95 (333)
T ss_dssp --CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECT
T ss_pred CCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEcc
Confidence 55677899999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeEEEeeeccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccc
Q 023967 86 NGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSG 165 (274)
Q Consensus 86 ~g~~p~~~~~~~~~~~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~ 165 (274)
+|+.|. ++++|||||+ |+..+|+|+++||+||+++||||||+.++||++.+|+|+|++||||++++|+||+|||+
T Consensus 96 ~G~~p~----~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~ 170 (333)
T 2p51_A 96 EGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSG 170 (333)
T ss_dssp TSCCCT----TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCH
T ss_pred CCCCCC----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccc
Confidence 999885 5899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHH
Q 023967 166 YDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFR 245 (274)
Q Consensus 166 yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~ 245 (274)
||||||+|+|++++||+++++|+++++.+||+|||||||++.|.++++||++||+.|+++|+|.+||||||||||++||+
T Consensus 171 YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~ 250 (333)
T 2p51_A 171 YDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFF 250 (333)
T ss_dssp HHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CccccccEEEecCCC
Q 023967 246 KLRENFFNG-CTEKYAGVLYGLGVE 269 (274)
Q Consensus 246 ~l~~~~~~~-~~~~~~g~i~Gl~~~ 269 (274)
||++.++++ +.++++|+|||||..
T Consensus 251 kl~~~~f~~~~~~~~~g~l~Gl~~~ 275 (333)
T 2p51_A 251 EIRSRYFDGSIDSRMLNQLYGLGST 275 (333)
T ss_dssp HHHHHHHTTSCCGGGTTCCTTC---
T ss_pred HHHHHhcCCCchhhhCCEEeccCcC
Confidence 999999976 578999999999886
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.9e-62 Score=481.02 Aligned_cols=234 Identities=23% Similarity=0.264 Sum_probs=201.0
Q ss_pred EEEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCCC----CCCChhHHHHHHHhcccccceeeeeeeeecCCCC
Q 023967 13 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGA----FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGN 88 (274)
Q Consensus 13 i~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~----~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~ 88 (274)
|+|||++||+++|+.|+++|++|+||||||||||++.+|.+. +.+++++||+++|+||+.++|||+|||+|+++|+
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 689999999999999999999999999999999999887533 3678999999999999999999999999999998
Q ss_pred CCCCCCCCeeeEEEeeeccCC-----CCc---cchhhhHHHHHHcCCCccchhhcCCChhHHHHHHH-----------Hh
Q 023967 89 LPTCGTDKFCIWQFNFREFNL-----IDD---IFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM-----------SS 149 (274)
Q Consensus 89 ~p~~~~~~~~~~~FNF~~F~~-----~~d---~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~-----------~S 149 (274)
.+ .|++|||||++||. ..| +|+++||+||++||||||+++++||+|..++|... .+
T Consensus 82 ~~-----~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~ 156 (507)
T 3d45_A 82 DS-----KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQAN 156 (507)
T ss_dssp SS-----CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC------
T ss_pred CC-----ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhh
Confidence 65 59999999999987 444 99999999999999999999999999987766532 11
Q ss_pred c-------------------------------------cc---c------------------------------------
Q 023967 150 G-------------------------------------IV---L------------------------------------ 153 (274)
Q Consensus 150 g-------------------------------------lv---~------------------------------------ 153 (274)
| +. +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v 236 (507)
T 3d45_A 157 GAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 236 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEE
Confidence 1 11 0
Q ss_pred -------------------------------------cCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCC
Q 023967 154 -------------------------------------NDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFP 196 (274)
Q Consensus 154 -------------------------------------~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP 196 (274)
+.+..||+||+.+|++||++.++ +|||+++++|++.++.+||
T Consensus 237 ~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~lFP 315 (507)
T 3d45_A 237 SKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICVFP 315 (507)
T ss_dssp ---------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCC
Confidence 01468999999999999999998 7999999999999999999
Q ss_pred ccccchhhhHh--hccc--cccHHHHHHHcC-----Ccc-------------CCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 197 VVYDIKHLMKF--CNSL--HGGLNKLAELLE-----VER-------------VGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 197 ~iyDtK~l~~~--~~~l--~~~L~~la~~L~-----v~r-------------~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
.|||||||++. +..+ .++|++|++.|+ .++ .|..|||||||||||.||++|++.+.
T Consensus 316 ~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 316 RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 3444 679999999997 333 46789999999999999999998875
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=7.6e-54 Score=412.60 Aligned_cols=233 Identities=21% Similarity=0.269 Sum_probs=193.3
Q ss_pred EEcCcccHHHHHHHHHHHhhhCCeeEEeccccccccCCCC----CCCCChhHHHHHHHhcccccceeeeeeeeecCCCCC
Q 023967 14 REVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVG----AFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNL 89 (274)
Q Consensus 14 ~dVw~~Nf~~el~~I~~~i~~~~fIAiDtEf~G~~~~~~~----~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~ 89 (274)
+|||++||++.|+.|+++|++|+||||||||||++.+|.. ...+++++||+++|+||+.++|||+|||+|+++|+.
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 4899999999999999999999999999999999988752 235789999999999999999999999999999987
Q ss_pred CCCCCCCeeeEEEeeeccCCC--------CccchhhhHHHHHHcCCCccchhhcCCChhHHHHH------H---------
Q 023967 90 PTCGTDKFCIWQFNFREFNLI--------DDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGEL------L--------- 146 (274)
Q Consensus 90 p~~~~~~~~~~~FNF~~F~~~--------~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~------l--------- 146 (274)
+ .|++|||||++||.. +++|+++||+||++||||||+++++||+|..++|. +
T Consensus 81 ~-----~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~ 155 (430)
T 2a1r_A 81 S-----KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANG 155 (430)
T ss_dssp T-----EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC------------
T ss_pred C-----ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcc
Confidence 5 599999999999531 36999999999999999999999999999443221 0
Q ss_pred ------------------------------------HH------------hcc----c----------------------
Q 023967 147 ------------------------------------MS------------SGI----V---------------------- 152 (274)
Q Consensus 147 ------------------------------------~~------------Sgl----v---------------------- 152 (274)
+. +|. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~ 235 (430)
T 2a1r_A 156 AGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKK 235 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCC
Confidence 00 000 0
Q ss_pred ------------------------------ccCceeE------------EeeccchhHHHHHHHhCCCCCCCChHHHHHH
Q 023967 153 ------------------------------LNDVVRW------------VTFHSGYDFGYLLKLLTCRSLPDTQAGFFEL 190 (274)
Q Consensus 153 ------------------------------~~~~~~w------------i~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~ 190 (274)
...+++| |+|++.+|+.|+++.+. +|||+++++|++.
T Consensus 236 ~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~-~pLP~~~~eFk~~ 314 (430)
T 2a1r_A 236 ERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY-CPLPADLSEFKEM 314 (430)
T ss_dssp ---------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CCCCSSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhc-cCCCCCHHHHHHH
Confidence 0001223 78899999999999886 6999999999999
Q ss_pred HHccCCccccchhhhHhhc--cc--cccHHHHHHHcCCc------------------cCCCCcccchhHHHHHHHHHHHH
Q 023967 191 INMYFPVVYDIKHLMKFCN--SL--HGGLNKLAELLEVE------------------RVGICHQAGSDSLLTSCTFRKLR 248 (274)
Q Consensus 191 l~~~FP~iyDtK~l~~~~~--~l--~~~L~~la~~L~v~------------------r~g~~HqAGsDs~lT~~~F~~l~ 248 (274)
++.+||.|||||||++... .+ .++|+.|.+.|+-. ..+..|+|||||||||.||++|+
T Consensus 315 i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~ 394 (430)
T 2a1r_A 315 TTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 394 (430)
T ss_dssp HHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999998863 22 36899999988632 13678999999999999999999
Q ss_pred HHhc
Q 023967 249 ENFF 252 (274)
Q Consensus 249 ~~~~ 252 (274)
+.+.
T Consensus 395 ~~l~ 398 (430)
T 2a1r_A 395 NYLG 398 (430)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 9864
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.88 E-value=4.3e-08 Score=85.91 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeec--CCCCCCCCCCCCeeeEE
Q 023967 24 EFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSD--ENGNLPTCGTDKFCIWQ 101 (274)
Q Consensus 24 el~~I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~--~~g~~p~~~~~~~~~~~ 101 (274)
++..+.+.++...||++|+|.||+... .-.|||+|+..++ ++|+. .....
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~---------------------~~~IieIgav~~~~~~~g~i-------~~~~~ 77 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK---------------------TDALLEIAAITLKMDEQGWL-------MPDTT 77 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE-------EEEEE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC---------------------CCeEEEEEEEEEEEcCCCcc-------cccce
Confidence 344566678899999999999998411 1248999999876 35542 13566
Q ss_pred EeeeccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHh--cccc---cCceeEEeeccchhHHHHHHHhC
Q 023967 102 FNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSS--GIVL---NDVVRWVTFHSGYDFGYLLKLLT 176 (274)
Q Consensus 102 FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--glv~---~~~~~wi~f~g~yD~~yLlk~l~ 176 (274)
|+.+.-|.......+.+.+ -+|+.-.....+|.+.....+.+..- ..+. .++..+|+++..||+.+|.+.+.
T Consensus 78 f~~~v~P~~~~~i~~~~~~---i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~ 154 (235)
T 3v9w_A 78 LHFHVEPFVGANLQPEALA---FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAE 154 (235)
T ss_dssp EEEEBCCCTTCBCCHHHHH---HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHH---HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHH
Confidence 7776333223345555555 37887775667787776543333221 0010 13567899999999999977663
Q ss_pred --CCCCCCChHHHHHHHHccCC-ccccchhhhHhhccccccHHHHHHHcCCccCC-CCcccchhHHHHHHHHHHHHHHhc
Q 023967 177 --CRSLPDTQAGFFELINMYFP-VVYDIKHLMKFCNSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 177 --~~~LP~~~~~F~~~l~~~FP-~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g-~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
|-+.|+ +.+ .++||..+++..-. .-+|..+++.+|++..+ ..|.|..||..|+++|.+|.+++.
T Consensus 155 ~~g~~~~p-----------~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 155 RASLKRNP-----------FHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HTTCCCCC-----------EEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCC-----------CCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 222110 111 47799888876522 24899999999998754 799999999999999999998875
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.80 E-value=1.3e-07 Score=80.68 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=115.8
Q ss_pred CeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeccCCCC-cc
Q 023967 36 NYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE-NGNLPTCGTDKFCIWQFNFREFNLID-DI 113 (274)
Q Consensus 36 ~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~~FNF~~F~~~~-d~ 113 (274)
.||++|+|.||+.... . ...-.|||+|...++. +|+ ....|+.+ ..... ..
T Consensus 11 ~~vviD~ETTGl~~~~------~-----------~~~~~Iieigav~~~~~~g~---------i~~~f~~l-v~P~~~~~ 63 (204)
T 1w0h_A 11 YICIIDFEATCEEGNP------P-----------EFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINTQ 63 (204)
T ss_dssp EEEECCCEECCCTTCC------T-----------TSCCCEEEEEEEEEETTTCS---------EEEEEEEE-BCCSSSCS
T ss_pred EEEEEEEecCCcCCCC------C-----------CCCCcEEEEEEEEEECCCCE---------EeeeeeeE-ECCCCCCc
Confidence 6899999999984321 0 1223599999999984 565 23457766 33333 24
Q ss_pred chhhhHHHHHHcCCCccchhhcCCChhHHHHH----HHHhcccccCceeEEeeccchhHH-HHHHHhC--CCCCCCChHH
Q 023967 114 FASDSVELLHQCGIDFKKNNEKGIDVNRFGEL----LMSSGIVLNDVVRWVTFHSGYDFG-YLLKLLT--CRSLPDTQAG 186 (274)
Q Consensus 114 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~----l~~Sglv~~~~~~wi~f~g~yD~~-yLlk~l~--~~~LP~~~~~ 186 (274)
.++.+.+. +|+.=..+. +|.+..+..+. +-...+ ..+....|++++.+|+. +|-+.+. +-++|.
T Consensus 64 i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~---- 134 (204)
T 1w0h_A 64 LSDFCISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP---- 134 (204)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG----
T ss_pred cCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc----
Confidence 55555444 788766654 46666543332 222211 12334578899999997 8877653 344442
Q ss_pred HHHHHHccCCccccchhhhHhh-cc--ccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 187 FFELINMYFPVVYDIKHLMKFC-NS--LHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 187 F~~~l~~~FP~iyDtK~l~~~~-~~--l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
++..++||+.+++.. +. -..+|..+++.+|++..|..|.|-.||..|+.+|.+|.+...
T Consensus 135 -------~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 135 -------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp -------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------cccceEEHHHHHHHHhCCCCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 223678998887654 21 135799999999999888899999999999999999988654
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.76 E-value=1.9e-07 Score=81.31 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=122.0
Q ss_pred HHHHhhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC--CCCCCCCCCCCeeeEEEeee
Q 023967 28 IREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE--NGNLPTCGTDKFCIWQFNFR 105 (274)
Q Consensus 28 I~~~i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~--~g~~p~~~~~~~~~~~FNF~ 105 (274)
+.+-+++..||++|+|.||+... .-.|||||+..++. +|++ .....|+.+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~g~i-------~~~~~f~~l 73 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA---------------------TDALLEIAATTVGMDEKGFL-------FPEHTYFFR 73 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE-------EEEEEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC---------------------CCeeEEEEEEEEEEcCCCcc-------cccceEEEE
Confidence 46667888999999999998311 12599999999873 5542 135667766
Q ss_pred ccCCCCccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHh--cccc---cCceeEEeeccchhHHHHHHHhCCCCC
Q 023967 106 EFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSS--GIVL---NDVVRWVTFHSGYDFGYLLKLLTCRSL 180 (274)
Q Consensus 106 ~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--glv~---~~~~~wi~f~g~yD~~yLlk~l~~~~L 180 (274)
.-|.......+.+.+. ||+.=....++|.+.....+.+..- ..+. .++...|++++.||+.+|.+.+....+
T Consensus 74 V~P~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~ 150 (224)
T 2f96_A 74 IEPFEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150 (224)
T ss_dssp BCCCTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTC
T ss_pred ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCC
Confidence 3333233455666554 7998777778888875432222110 0110 124468899999999999876631112
Q ss_pred CCChHHHHHHHHccC-C-ccccchhhhHhhccccccHHHHHHHcCCccCC-CCcccchhHHHHHHHHHHHHHHhc
Q 023967 181 PDTQAGFFELINMYF-P-VVYDIKHLMKFCNSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 181 P~~~~~F~~~l~~~F-P-~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g-~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
+. .-| + .++||..+++..-. .-+|..+++.+|++..+ ..|.|-.|+..|+++|.+|.+.+.
T Consensus 151 ~~----------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 151 KR----------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp CC----------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc----------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 10 001 1 47898877775421 23799999999998754 789999999999999999988765
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.68 E-value=3.2e-07 Score=77.83 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=108.6
Q ss_pred CCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCCccc
Q 023967 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIF 114 (274)
Q Consensus 35 ~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~d~~ 114 (274)
.+||++|+|.||+... .. | -+.-.|||+|...++ +|+. ....|+.+ .+... ..
T Consensus 9 ~~~vviD~ETTGl~~~--~~--------~------~~~~~Iieig~v~~~-~~~~--------~~~~f~~l-v~P~~-~i 61 (194)
T 2gui_A 9 TRQIVLDTETTGMNQI--GA--------H------YEGHKIIEIGAVEVV-NRRL--------TGNNFHVY-LKPDR-LV 61 (194)
T ss_dssp CEEEEEEEEESCCCSS--SS--------T------TTTCCEEEEEEEEEE-TTEE--------CSCCEEEE-CCCSS-CC
T ss_pred CCEEEEEeeCCCCCCc--cc--------C------CCCCEEEEEEEEEEE-CCeE--------eccEEEEE-ECcCC-cC
Confidence 5799999999998532 00 1 012359999999887 3432 11235554 33222 44
Q ss_pred hhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccchhHHHHHHHhC--CCCCCCChHHHHHHHH
Q 023967 115 ASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLT--CRSLPDTQAGFFELIN 192 (274)
Q Consensus 115 ~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~yD~~yLlk~l~--~~~LP~~~~~F~~~l~ 192 (274)
.+.+.+. ||+.=+.+. ++.+..+..+.+.. .+ . +-.+|++++.||+.+|.+.+. +.+.|. ..
T Consensus 62 ~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~------- 125 (194)
T 2gui_A 62 DPEAFGV---HGIADEFLL-DKPTFAEVADEFMD--YI-R-GAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN------- 125 (194)
T ss_dssp CHHHHHH---HCCCHHHHT-TSCCHHHHHHHHHH--HH-T-TSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG-------
T ss_pred CHHHHHh---hCcCHHHHh-CCCCHHHHHHHHHH--HH-C-CCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc-------
Confidence 5555444 788765553 45554433333221 11 1 225789999999999888763 445442 10
Q ss_pred ccCCccccchhhhHhh-ccccccHHHHHHHcCCccCC-CCcccchhHHHHHHHHHHHHHH
Q 023967 193 MYFPVVYDIKHLMKFC-NSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTSCTFRKLREN 250 (274)
Q Consensus 193 ~~FP~iyDtK~l~~~~-~~l~~~L~~la~~L~v~r~g-~~HqAGsDs~lT~~~F~~l~~~ 250 (274)
.+..++||-.+++.. ++...+|+.+++.+|++..+ ..|.|-.|+..|+++|.+|.+.
T Consensus 126 -~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 126 -TFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -GTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred -ccCceeeHHHHHHHHcCCCCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 013567876666554 33456899999999999877 5999999999999999998654
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.65 E-value=1.2e-06 Score=79.79 Aligned_cols=175 Identities=10% Similarity=0.002 Sum_probs=116.8
Q ss_pred CCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeccCCCC-c
Q 023967 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE-NGNLPTCGTDKFCIWQFNFREFNLID-D 112 (274)
Q Consensus 35 ~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~~FNF~~F~~~~-d 112 (274)
-.||++|+|.||+...+ +...-.|||||+..++. +|+ ..-.|+.+ ..... .
T Consensus 78 ~~~vviD~ETTGl~~~~-----------------~~~~~~IIeIgaV~v~~~~g~---------i~~~f~~l-V~P~~~~ 130 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINT 130 (299)
T ss_dssp SEEEEECCEECCCTTCC-----------------TTCCCCEEEEEEEEEETTTCC---------EEEEEEEE-BCCSSSC
T ss_pred ceEEEEEeecccCCCCC-----------------CCCCCceEEEEEEEEECCCCe---------Eeeeeeee-ecCCCCC
Confidence 36899999999984321 01223599999999985 343 34567766 33333 2
Q ss_pred cchhhhHHHHHHcCCCccchhhcCCChhHHHHH----HHHhcccccCceeEEeeccchhHH-HHHHHh--CCCCCCCChH
Q 023967 113 IFASDSVELLHQCGIDFKKNNEKGIDVNRFGEL----LMSSGIVLNDVVRWVTFHSGYDFG-YLLKLL--TCRSLPDTQA 185 (274)
Q Consensus 113 ~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~----l~~Sglv~~~~~~wi~f~g~yD~~-yLlk~l--~~~~LP~~~~ 185 (274)
...+.+.+. |||.=..+. +|.+..+..+. +-..++- .+...+|++++.+|+. +|-+.+ .+.++|.
T Consensus 131 ~i~~~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~--- 202 (299)
T 1zbh_A 131 QLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--- 202 (299)
T ss_dssp SCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG---
T ss_pred CCCHHHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc---
Confidence 455556554 788766654 46666543332 3222211 1224689999999999 987765 3445552
Q ss_pred HHHHHHHccCCccccchhhhHhhcccc---ccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 186 GFFELINMYFPVVYDIKHLMKFCNSLH---GGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 186 ~F~~~l~~~FP~iyDtK~l~~~~~~l~---~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
++..++|++.+.....++. -+|..+++.+|++..|..|.|-.||..|+.+|.+|.+...
T Consensus 203 --------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 203 --------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp --------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 1235789877765542222 4899999999999888899999999999999999988754
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.61 E-value=8.5e-07 Score=75.04 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=106.6
Q ss_pred hhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCC
Q 023967 32 VDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLID 111 (274)
Q Consensus 32 i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~ 111 (274)
+...+||++|+|.||+... .-.|||+|+..++ +|+ ..-.|+.+.-| ..
T Consensus 9 l~~~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~-~g~---------i~~~f~~lv~P-~~ 56 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ---------------------VDEIIEIGAVKIQ-GGQ---------IVDEYHTLIKP-SR 56 (186)
T ss_dssp ----CEEEEEEEESCSCTT---------------------TCCEEEEEEEEEE-TTE---------EEEEEEEECBC-SS
T ss_pred CcCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEE-CCE---------EEEEEEEEECc-CC
Confidence 4567999999999997311 0149999998876 343 23456665233 22
Q ss_pred ccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccchhHHHHHHHhC--CCCCCCChHHHHH
Q 023967 112 DIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLT--CRSLPDTQAGFFE 189 (274)
Q Consensus 112 d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~yD~~yLlk~l~--~~~LP~~~~~F~~ 189 (274)
..++.+.+ -+|+.-..+ .++.+..+..+.+.. .+ . +-..|++++.+|+.+|.+.+. |.+.|.
T Consensus 57 -~i~~~~~~---i~GIt~~~l-~~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~~------- 120 (186)
T 2p1j_A 57 -EISRKSSE---ITGITQEML-ENKRSIEEVLPEFLG--FL-E-DSIIVAHNANFDYRFLRLWIKKVMGLDWE------- 120 (186)
T ss_dssp -CCCHHHHH---HHCCCHHHH-TTCCBHHHHHHHHHH--HS-S-SCEEEETTHHHHHHHHHHHHHHHHCCCCC-------
T ss_pred -CCCHHHhh---hcCCCHHHH-hcCCCHHHHHHHHHH--HH-C-CCEEEEECcHHHHHHHHHHHHHcCCCCCC-------
Confidence 34444443 378876554 346665554444332 12 1 236889999999999887653 233321
Q ss_pred HHHccCCccccchhhhHhhccc-cccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHH
Q 023967 190 LINMYFPVVYDIKHLMKFCNSL-HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLREN 250 (274)
Q Consensus 190 ~l~~~FP~iyDtK~l~~~~~~l-~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~ 250 (274)
..++||..+++...+. +-+|..+++.+|++..+ .|.|-.|+..|+.+|.+|.+.
T Consensus 121 ------~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 121 ------RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp ------CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHHHH
Confidence 2477987777665322 45899999999998765 699999999999999998664
No 13
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.58 E-value=2.3e-06 Score=74.60 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred CeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCC-CCCCCCCCCCeeeEEEeeeccCCCC-cc
Q 023967 36 NYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDEN-GNLPTCGTDKFCIWQFNFREFNLID-DI 113 (274)
Q Consensus 36 ~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~-g~~p~~~~~~~~~~~FNF~~F~~~~-d~ 113 (274)
.||++|+|.||+... . +.-.|||+|....+.+ |+ ....|+.+ ..... ..
T Consensus 32 ~~vviD~ETTGl~~~-----~--------------d~~~IieIgav~v~~~~~~---------i~~~f~~l-V~P~~~~~ 82 (224)
T 2xri_A 32 YFLVLDFEATCDKPQ-----I--------------HPQEIIEFPILKLNGRTME---------IESTFHMY-VQPVVHPQ 82 (224)
T ss_dssp EEEEECCEECCCC-C-----C--------------SSCCEEEEEEEEEETTTCC---------EEEEEEEE-CCCSSSCS
T ss_pred eEEEEEEEcCCCCCC-----C--------------CCcceEEEEEEEEecCCcE---------EeeeeeeE-ECCCCCCc
Confidence 599999999998421 0 1135999999988854 33 34567766 33332 24
Q ss_pred chhhhHHHHHHcCCCccchhhcCCChhH----HHHHHHHhcccc-cCceeEEeeccchhHHHHH-HHh--CCCCCCCChH
Q 023967 114 FASDSVELLHQCGIDFKKNNEKGIDVNR----FGELLMSSGIVL-NDVVRWVTFHSGYDFGYLL-KLL--TCRSLPDTQA 185 (274)
Q Consensus 114 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~----f~e~l~~Sglv~-~~~~~wi~f~g~yD~~yLl-k~l--~~~~LP~~~~ 185 (274)
.++.+.+. +|+.=..+ .+|.+..+ |.+.+-...+|. |-...|++. |.+|+.+|+ +.+ .|-++|.
T Consensus 83 i~~~~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~--- 154 (224)
T 2xri_A 83 LTPFCTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD--- 154 (224)
T ss_dssp CCHHHHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG---
T ss_pred CCHHHHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc---
Confidence 55555554 78876654 45666654 333343444443 224577777 599999865 333 2445552
Q ss_pred HHHHHHHccCCccccchhhhHhhccc--cccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHh
Q 023967 186 GFFELINMYFPVVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251 (274)
Q Consensus 186 ~F~~~l~~~FP~iyDtK~l~~~~~~l--~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~ 251 (274)
+|...+|++...+....+ .-+|..+++.+|++..|..|.|-.||..|+.+|.+|.+..
T Consensus 155 --------~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 155 --------YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp --------GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------cccceEeHHHHHHHHhccCCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHcC
Confidence 122566755433332222 2489999999999988889999999999999999998753
No 14
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.56 E-value=1.8e-06 Score=79.17 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=115.1
Q ss_pred CeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeccCCCCc-c
Q 023967 36 NYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE-NGNLPTCGTDKFCIWQFNFREFNLIDD-I 113 (274)
Q Consensus 36 ~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~~FNF~~F~~~~d-~ 113 (274)
.||++|+|.||+... .+ | .-.|||||...++. +|+. .....|+-+ ...... .
T Consensus 20 ~~vviD~ETTGl~~~-----~d-----~--------~~eIIEIgaV~vd~~~g~i-------~~~~~f~~l-V~P~~~p~ 73 (308)
T 3cg7_A 20 TLLILDFETTSDAAN-----QD-----Y--------PCEVIQFAIVAYDVPNDKI-------REDISFNKY-VKPVLNRT 73 (308)
T ss_dssp EEEEEEEEECCBTTB-----CS-----C--------CCCEEEEEEEEEETTTTEE-------EEEEEEEEE-CBCSSBCS
T ss_pred eEEEEEeecCCCCCC-----CC-----C--------CCCeEEEEEEEEEcCCCEE-------eeccceeeE-ECCCCCCC
Confidence 589999999998432 11 1 13599999999984 4542 111257665 333332 2
Q ss_pred chhhhHHHHHHcCCCccchhhcCCChhH----HHHHHHHhcccccCceeEEeeccchhH-HHHHHHh--CCCCCCCChHH
Q 023967 114 FASDSVELLHQCGIDFKKNNEKGIDVNR----FGELLMSSGIVLNDVVRWVTFHSGYDF-GYLLKLL--TCRSLPDTQAG 186 (274)
Q Consensus 114 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~----f~e~l~~Sglv~~~~~~wi~f~g~yD~-~yLlk~l--~~~~LP~~~~~ 186 (274)
.++.+.+. +||.=..+. +|.+..+ |.+.+-...++ ..++.|++. |.+|+ .+|-+.+ .+-++|.
T Consensus 74 i~~~~~~l---tGIt~e~v~-~ap~~~evl~~f~~~l~~~~lv-ahn~~lv~~-g~fD~~~fL~~~~~~~g~~~p~---- 143 (308)
T 3cg7_A 74 LTKNCVDF---TGIPQRSID-TADTFDVVYEQFQQWLITLGLE-EGKFAFVCD-SRQDLWRIAQYQMKLSNIQMPA---- 143 (308)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSCBHHHHHHHHHHHHHHHCCC-TTSEEEEES-SSHHHHTHHHHHHHHTTCCCCG----
T ss_pred CCHHHHHH---cCCCHHHHh-cCCCHHHHHHHHHHHHHhCCcC-CcceEEecc-CcccHHHHHHHHHHHcCCCCch----
Confidence 55555544 788766654 4777654 33333344443 566677764 78999 6876654 3455552
Q ss_pred HHHHHHccCCccccchhhhHhh-ccc-------cccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 187 FFELINMYFPVVYDIKHLMKFC-NSL-------HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 187 F~~~l~~~FP~iyDtK~l~~~~-~~l-------~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
+|...+||+-+++.. +.. +-+|..+++.+|++..+..|.|-.||..|+++|.+|.+...
T Consensus 144 -------~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~ 210 (308)
T 3cg7_A 144 -------FFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGA 210 (308)
T ss_dssp -------GGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------hhcceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 223567988777654 222 23799999999999888889999999999999999987643
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.48 E-value=1.3e-06 Score=77.33 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=114.6
Q ss_pred CCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCC---------CCCCCCCCCeeeEEEeee
Q 023967 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENG---------NLPTCGTDKFCIWQFNFR 105 (274)
Q Consensus 35 ~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g---------~~p~~~~~~~~~~~FNF~ 105 (274)
-.||++|+|-||+... .=.|||||+...+.++ .....+........|+..
T Consensus 12 ~~~vv~D~ETTGl~~~---------------------~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l 70 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSS---------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC 70 (242)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEE
T ss_pred ceEEEEEeecCCCCCC---------------------CCeeEEEEEEEecCCcccccccccccccccccccchhheeEEE
Confidence 3699999999998421 1359999998876431 100000011344567765
Q ss_pred ccCCCCccchhhhHHHHHHcCCCccchhhcCC-Chh-HHHHHHHH--hcccccCceeEEeecc-chhHHHHHHHhCCCCC
Q 023967 106 EFNLIDDIFASDSVELLHQCGIDFKKNNEKGI-DVN-RFGELLMS--SGIVLNDVVRWVTFHS-GYDFGYLLKLLTCRSL 180 (274)
Q Consensus 106 ~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI-~~~-~f~e~l~~--Sglv~~~~~~wi~f~g-~yD~~yLlk~l~~~~L 180 (274)
.+.. ..+.+.+.+ -||+.=..+...|+ +.. +..+.+.. .+. .+...+|+||+ .||+.+|-+.+...-+
T Consensus 71 -i~P~-~~i~~~~~~---i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~~~~r~g~ 143 (242)
T 3mxm_B 71 -IAPG-KACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLST 143 (242)
T ss_dssp -CCCS-SCCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSS
T ss_pred -ECCC-CCCCHHHHH---hcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHHHHHHcCC
Confidence 4433 345566554 49999999988886 343 43333322 111 12357899998 9999999998743222
Q ss_pred CCChHHHHHHHHccC-C-ccccchhhhHhhc-c--------c-cccHHHHHHH-cCCccCCCCcccchhHHHHHHHHHHH
Q 023967 181 PDTQAGFFELINMYF-P-VVYDIKHLMKFCN-S--------L-HGGLNKLAEL-LEVERVGICHQAGSDSLLTSCTFRKL 247 (274)
Q Consensus 181 P~~~~~F~~~l~~~F-P-~iyDtK~l~~~~~-~--------l-~~~L~~la~~-L~v~r~g~~HqAGsDs~lT~~~F~~l 247 (274)
|.. + + ..+||-.+++.+. . + +-+|+.+++. +|++..+ .|.|-+|+..|+++|.++
T Consensus 144 ~~~-----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~ 211 (242)
T 3mxm_B 144 PSP-----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWK 211 (242)
T ss_dssp CCT-----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSS
T ss_pred CCC-----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHH
Confidence 211 1 1 3567766666431 1 1 2379999977 9998754 799999999999999999
Q ss_pred HHHhc
Q 023967 248 RENFF 252 (274)
Q Consensus 248 ~~~~~ 252 (274)
.+.+.
T Consensus 212 ~~~~~ 216 (242)
T 3mxm_B 212 PQALL 216 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.46 E-value=2.5e-06 Score=79.66 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=115.1
Q ss_pred CCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecC-CCCCCCCCCCCeeeEEEeeeccCCCCcc
Q 023967 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDE-NGNLPTCGTDKFCIWQFNFREFNLIDDI 113 (274)
Q Consensus 35 ~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~~FNF~~F~~~~d~ 113 (274)
-.||+||+|.||+...+ +...-.|||||+..++. +|+ ..-.|+.+.-|.....
T Consensus 128 ~~~vviD~ETTGl~~~~-----------------~~~~deIIEIgaV~vd~~~g~---------i~~~f~~lVkP~~~~~ 181 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE---------IEDTFQQYVRPEINTQ 181 (349)
T ss_dssp SEEEECCCEECCCTTCC-----------------TTCCCCEEECCEEEEETTTTE---------EEEEECCBEECSSSCS
T ss_pred CeEEEEEEecCCCCCcC-----------------CCCCCeEEEEEEEEEECCCce---------EeEEEEEEECCCCCCC
Confidence 47899999999984321 01223599999999985 333 3456666523322124
Q ss_pred chhhhHHHHHHcCCCccchhhcCCChhHHHH----HHHHhcccccCceeEEeeccchhHH-HHHHHh--CCCCCCCChHH
Q 023967 114 FASDSVELLHQCGIDFKKNNEKGIDVNRFGE----LLMSSGIVLNDVVRWVTFHSGYDFG-YLLKLL--TCRSLPDTQAG 186 (274)
Q Consensus 114 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e----~l~~Sglv~~~~~~wi~f~g~yD~~-yLlk~l--~~~~LP~~~~~ 186 (274)
+.+.+.+. |||.=..+. +|.+..+..+ .+-...+- .+....|++++.||+. +|-+.+ .+.++|.
T Consensus 182 I~~~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~---- 252 (349)
T 1zbu_A 182 LSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP---- 252 (349)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG----
T ss_pred CCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc----
Confidence 55555554 787766654 4555543322 22222111 1224688999999999 887765 3445552
Q ss_pred HHHHHHccCCccccchhhhHhhcccc---ccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 187 FFELINMYFPVVYDIKHLMKFCNSLH---GGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 187 F~~~l~~~FP~iyDtK~l~~~~~~l~---~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
++-.++|++.+.....++. -+|..+++.+|++..|..|.|-.||..|+.+|.+|.+...
T Consensus 253 -------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 253 -------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp -------GGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------ccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1235778887765542222 4899999999999888899999999999999999988754
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.43 E-value=3.1e-06 Score=73.94 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=108.6
Q ss_pred CCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCC------CCCCCCCCCeeeEEEeeeccC
Q 023967 35 YNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENG------NLPTCGTDKFCIWQFNFREFN 108 (274)
Q Consensus 35 ~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g------~~p~~~~~~~~~~~FNF~~F~ 108 (274)
.+||.+|+|.||+. + +.-.|||||+..++.++ ..............|+.+ .+
T Consensus 10 ~~~v~iD~ETTGl~--~-------------------~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l-v~ 67 (238)
T 1y97_A 10 ETFVFLDLEATGLP--S-------------------VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLC-MC 67 (238)
T ss_dssp SEEEEEEEEESSCG--G-------------------GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEE-CC
T ss_pred CeEEEEEeeCCCcC--C-------------------CCCcEEEEEEEEecccccccccccccccccccccceeeEEE-EC
Confidence 47999999999984 1 01249999999887431 000000000123456665 33
Q ss_pred CCCccchhhhHHHHHHcCCCccchhhcCCChh--HHHHHHHHh-cccccCceeEEeecc-chhHHHHHHHhC--CCCCCC
Q 023967 109 LIDDIFASDSVELLHQCGIDFKKNNEKGIDVN--RFGELLMSS-GIVLNDVVRWVTFHS-GYDFGYLLKLLT--CRSLPD 182 (274)
Q Consensus 109 ~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~--~f~e~l~~S-glv~~~~~~wi~f~g-~yD~~yLlk~l~--~~~LP~ 182 (274)
... ..++.+.+ -||+.=..+...|.+.. +..+.+..- +-+ .+...+|++++ .||+.+|.+.+. +.++|.
T Consensus 68 P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~-~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~ 142 (238)
T 1y97_A 68 PER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQ-AGPICLVAHNGFDYDFPLLCAELRRLGARLPR 142 (238)
T ss_dssp CSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTS-CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCT
T ss_pred CCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhC-CCCCEEEecCchhhhHHHHHHHHHHcCCCCCC
Confidence 333 34555544 48888887776676642 333332210 111 12357899999 999999988763 344442
Q ss_pred ChHHHHHHHHccCCccccchhhhHhhc----------cc-cccHHHHHH-HcCCccCCCCcccchhHHHHHHHHHHHHHH
Q 023967 183 TQAGFFELINMYFPVVYDIKHLMKFCN----------SL-HGGLNKLAE-LLEVERVGICHQAGSDSLLTSCTFRKLREN 250 (274)
Q Consensus 183 ~~~~F~~~l~~~FP~iyDtK~l~~~~~----------~l-~~~L~~la~-~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~ 250 (274)
. ..++||-.+++... +. +-+|+.+++ .+|++.. ..|.|-.|+..|+++|.+|.+.
T Consensus 143 ~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 143 D------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp T------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHH
T ss_pred C------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHH
Confidence 1 13678766666542 22 347999999 4998753 4799999999999999999887
Q ss_pred hc
Q 023967 251 FF 252 (274)
Q Consensus 251 ~~ 252 (274)
+.
T Consensus 210 ~~ 211 (238)
T 1y97_A 210 LL 211 (238)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 18
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.31 E-value=3.8e-06 Score=71.26 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=97.1
Q ss_pred hCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCCcc
Q 023967 34 KYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDI 113 (274)
Q Consensus 34 ~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~d~ 113 (274)
..+||++|+|.||+... . .-.|+|+|+. +.+|+ . . |+.+.-|. . .
T Consensus 4 ~~~~vviD~ETTGl~~~-------~-------------~~~iiei~~v--~~~g~--------~-i--~~~lV~P~-~-~ 48 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH-------R-------------ESGLARCSLV--NVHGA--------V-L--YDKFIRPE-G-E 48 (189)
T ss_dssp --CEEEEEEEEEEETTT-------T-------------EEEEEEEEEE--CTTCC--------E-E--EEEEEECS-S-C
T ss_pred CCeEEEEEeECcCcCCC-------C-------------CceEEEEEEE--eCCCC--------E-E--EeeEecCC-C-C
Confidence 46899999999998411 0 1347899974 44554 1 2 44442222 2 2
Q ss_pred chhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHc
Q 023967 114 FASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINM 193 (274)
Q Consensus 114 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~ 193 (274)
..+.+.+. +|+.=..+. ++.+..+..+.+.. .+ ++-.+|+++..||+.+|-+ .+|.
T Consensus 49 i~~~~~~i---~GIt~~~l~-~a~~~~~v~~~~~~--~l--~~~~lV~hn~~fD~~~L~~-----~~~~----------- 104 (189)
T 1wlj_A 49 ITDYRTRV---SGVTPQHMV-GATPFAVARLEILQ--LL--KGKLVVGHDLKHDFQALKE-----DMSG----------- 104 (189)
T ss_dssp EEECCHHH---HCCCHHHHT-TCEEHHHHHHHHHH--HH--TTSEEEESSHHHHHHHTTC-----CCTT-----------
T ss_pred CCccccCC---CCCCHHHHc-CCCCHHHHHHHHHH--HH--CCCEEEECCcHHHHHHHHH-----hCCC-----------
Confidence 33344433 666555443 35544433322221 11 1346888888899987643 2331
Q ss_pred cCCccccchhhhHhhc--cc----cccHHHHHHH-cCCccCCC--CcccchhHHHHHHHHHHHHHHhcC
Q 023967 194 YFPVVYDIKHLMKFCN--SL----HGGLNKLAEL-LEVERVGI--CHQAGSDSLLTSCTFRKLRENFFN 253 (274)
Q Consensus 194 ~FP~iyDtK~l~~~~~--~l----~~~L~~la~~-L~v~r~g~--~HqAGsDs~lT~~~F~~l~~~~~~ 253 (274)
..++||..+..... .+ ..+|..+++. ||++..+. .|.|-.|+..|+.+|.+|.+.+..
T Consensus 105 --~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~~ 171 (189)
T 1wlj_A 105 --YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171 (189)
T ss_dssp --CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 14789876643221 22 4589999998 89987554 899999999999999999988753
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.28 E-value=1.1e-05 Score=74.48 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=112.4
Q ss_pred CeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCC---------CCCCCCCCeeeEEEeeec
Q 023967 36 NYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGN---------LPTCGTDKFCIWQFNFRE 106 (274)
Q Consensus 36 ~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~---------~p~~~~~~~~~~~FNF~~ 106 (274)
.||.+|+|-||+... .=.|||||+..++.++. .+..+........|+..
T Consensus 13 tfVv~DlETTGL~~~---------------------~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~l- 70 (314)
T 3u3y_B 13 TLIFLDLEATGLPSS---------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 70 (314)
T ss_dssp EEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEE-
T ss_pred CEEEEEEECCCCCCC---------------------CCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEE-
Confidence 599999999998421 12499999998875421 00000011244667765
Q ss_pred cCCCCccchhhhHHHHHHcCCCccchhhcCCC-h-hHHHHHHHH--hcccccCceeEEeecc-chhHHHHHHHhC--CCC
Q 023967 107 FNLIDDIFASDSVELLHQCGIDFKKNNEKGID-V-NRFGELLMS--SGIVLNDVVRWVTFHS-GYDFGYLLKLLT--CRS 179 (274)
Q Consensus 107 F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~-~-~~f~e~l~~--Sglv~~~~~~wi~f~g-~yD~~yLlk~l~--~~~ 179 (274)
.+.. ..+.+.+.+. |||.=+.+...|++ . .+..+.+.. .+. .+...+|+||| .||+.||-+.+. |.+
T Consensus 71 I~P~-~~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~el~r~Gl~ 144 (314)
T 3u3y_B 71 IAPG-KACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLSTP 144 (314)
T ss_dssp CBCS-SCCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSSC
T ss_pred ECCC-CCCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 3333 3456666554 99999999998884 3 244333322 111 23357899994 999999998874 333
Q ss_pred CCCChHHHHHHHHccCCccccchhhhHhh-c----c-----ccccHHHHHHH-cCCccCCCCcccchhHHHHHHHHHHHH
Q 023967 180 LPDTQAGFFELINMYFPVVYDIKHLMKFC-N----S-----LHGGLNKLAEL-LEVERVGICHQAGSDSLLTSCTFRKLR 248 (274)
Q Consensus 180 LP~~~~~F~~~l~~~FP~iyDtK~l~~~~-~----~-----l~~~L~~la~~-L~v~r~g~~HqAGsDs~lT~~~F~~l~ 248 (274)
+|... -..+||--+++.+ + . -+-+|..+++. +|++.. ..|.|-+|+..|+++|.++.
T Consensus 145 ~~~~~-----------~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~ 212 (314)
T 3u3y_B 145 SPLDG-----------TFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKP 212 (314)
T ss_dssp CTTTT-----------CEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSH
T ss_pred CCCCC-----------ceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 32100 0134554433321 1 1 12379999999 999865 58999999999999999999
Q ss_pred HHhc
Q 023967 249 ENFF 252 (274)
Q Consensus 249 ~~~~ 252 (274)
+.+.
T Consensus 213 ~~~l 216 (314)
T 3u3y_B 213 QALL 216 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 20
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.25 E-value=8.4e-06 Score=79.24 Aligned_cols=175 Identities=16% Similarity=0.115 Sum_probs=112.0
Q ss_pred hhhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCC
Q 023967 32 VDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLID 111 (274)
Q Consensus 32 i~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~ 111 (274)
+...+||++|+|.||+... .-.|||||...++.+|+.- ..+|+.+ .....
T Consensus 6 ~~~~~~vv~DlETTGl~p~---------------------~d~IIEIgaV~vd~~g~ii--------~~~f~~l-VkP~~ 55 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA---------------------LDRPAQFAAIRTDSEFNVI--------GEPEVFY-CKPAD 55 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT---------------------TSCEEEEEEEEECTTSCBC--------SCCEEEE-BCCCT
T ss_pred CCCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEECCCeEE--------eeeeEEE-ECCCC
Confidence 4567899999999998311 0259999999998777632 1236665 44434
Q ss_pred cc-chhhhHHHHHHcCCCccchhhcCCChhHHHHHHHHhcccccCceeEEeec-cchhHHHHHHHhCC---CCCCCChHH
Q 023967 112 DI-FASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDVVRWVTFH-SGYDFGYLLKLLTC---RSLPDTQAG 186 (274)
Q Consensus 112 d~-~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sglv~~~~~~wi~f~-g~yD~~yLlk~l~~---~~LP~~~~~ 186 (274)
+. .+++++ .-+||.=..+...|.+..++.+.+.. .+..++..+|+++ -.||..+|-+.+.. .++|..+..
T Consensus 56 ~ilp~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~ 130 (482)
T 2qxf_A 56 DYLPQPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 (482)
T ss_dssp TCCCCHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGG
T ss_pred CCCCCHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCcccccccc
Confidence 33 356666 44999988888888885544443321 1111345789998 48999998887642 222211100
Q ss_pred HHHHHHccCCccccchhhhHhhc--------------cc-cccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHH
Q 023967 187 FFELINMYFPVVYDIKHLMKFCN--------------SL-HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLREN 250 (274)
Q Consensus 187 F~~~l~~~FP~iyDtK~l~~~~~--------------~l-~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~ 250 (274)
....+||--+++.+. +. +-+|+.+++.+|++. +..|.|-+|++.|+.+|.+|++.
T Consensus 131 --------~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~-~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 131 --------DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp --------GCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHHHH
T ss_pred --------CCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 013456655555442 11 237999999999986 45799999999999999998764
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=98.04 E-value=7.8e-05 Score=62.18 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=96.6
Q ss_pred hCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCCc-
Q 023967 34 KYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDD- 112 (274)
Q Consensus 34 ~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~d- 112 (274)
.-+||++|+|.||+. |. .=.|||+|....+.+|+ .....|+.+ .+....
T Consensus 4 ~~~~v~iD~ETTGl~--~~-------------------~~~IieIg~v~~~~~~~--------~~~~~~~~l-v~P~~~i 53 (180)
T 2igi_A 4 ENNLIWIDLEMTGLD--PE-------------------RDRIIEIATLVTDANLN--------ILAEGPTIA-VHQSDEQ 53 (180)
T ss_dssp GGCEEEEEEEESSSC--TT-------------------TCCEEEEEEEEECTTCC--------EEEEEEEEE-CCCCHHH
T ss_pred CCcEEEEEeeCCCCC--CC-------------------CCceEEEEEEEEcCCCc--------EecCCcceE-ECCCHHH
Confidence 357999999999983 20 01499999998875554 222336666 333221
Q ss_pred --cchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHH--hcccccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHH
Q 023967 113 --IFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMS--SGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188 (274)
Q Consensus 113 --~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~ 188 (274)
..++.+.+.-.-+|+.=.. ..+|.+..+..+.+.. .+........+|+++..||+.+|-+.+- .+
T Consensus 54 ~~~i~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~---------~~- 122 (180)
T 2igi_A 54 LALMDDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP---------EL- 122 (180)
T ss_dssp HTTCCHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCH---------HH-
T ss_pred hhcCCHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHH---------Hh-
Confidence 1233343333346765444 3456666544333322 1111111346788878999999887641 11
Q ss_pred HHHHccC-CccccchhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 189 ELINMYF-PVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 189 ~~l~~~F-P~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
...+ ...+|+..|.+....+..++. .+++ ....|.|-.|+..|+.+|.++++.++
T Consensus 123 ---~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~-~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 123 ---EAYFHYRYLDVSTLKELARRWKPEIL-----DGFT-KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ---HHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC-CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ---ccCCCcceeeHHHHHHHHHHhChHhh-----hCCC-CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 1233 246785444222211211221 1442 35689999999999999999999876
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.65 E-value=0.00039 Score=58.97 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=95.8
Q ss_pred hhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCCc
Q 023967 33 DKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDD 112 (274)
Q Consensus 33 ~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~d 112 (274)
...+||++|+|.||+... .=.|||+|.... +|+.. .....|+.. .+....
T Consensus 7 ~~~~~vviD~ETTGl~p~---------------------~d~IieIgav~~--~~~~~------~~~~~~~~~-v~p~~~ 56 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD---------------------RDSIIEIATIVT--DAQLN------VLAEGPELA-IAHSLE 56 (194)
T ss_dssp -CCEEEEEEEEESCSCTT---------------------TCCEEEEEEEEE--ETTCC------EEEECCCEE-CCCCHH
T ss_pred CCCCEEEEEeECCCCCCC---------------------CCccEEEEEEEE--cCCcc------eeccCceEE-EeCCHH
Confidence 556899999999998411 014999997774 34321 122345554 322221
Q ss_pred c---chhhhHHHHHHcCCCccchhhcCCChhHHHHHHHH--hcccccCceeEEeeccchhHHHHHHHhCCCCCCCChHHH
Q 023967 113 I---FASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMS--SGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGF 187 (274)
Q Consensus 113 ~---~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F 187 (274)
. +++...+.-.-+|+.=.. ..+|.+..+..+.+.. .+-+......+|+++..||+.+|-+-+- .+
T Consensus 57 i~~~~~~~~~~~~~itGIt~~~-l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~---------~~ 126 (194)
T 2gbz_A 57 TLEAMDEWNRNQHRRSGLWQRV-LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS---------RL 126 (194)
T ss_dssp HHHTSCSHHHHHHHHHTHHHHH-HHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCH---------HH
T ss_pred HhhccchHHHHHHHhhCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHH---------Hh
Confidence 1 111122223346765443 4557766654444332 1222223345899999999999988652 11
Q ss_pred HHHHHccC-CccccchhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhc
Q 023967 188 FELINMYF-PVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 188 ~~~l~~~F-P~iyDtK~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
..++ .+..|+..+.+.+..+... +++ ++ +....|.|-+|+..|+.+|..+++.++
T Consensus 127 ----~~~~~~~~~d~~~l~~l~~~~~p~---~~~--~i-~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 127 ----ERYFHYRNLDVSTIKELARRWAPA---VAS--GF-AKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp ----HHHSCSCEEEHHHHHHHHHHHCGG---GGT--TC-CCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred ----cccCCCccccHHHHHHHHHHhCHH---HHh--CC-CCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 1233 3566776543333222111 111 23 345689999999999999999998876
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.12 E-value=0.01 Score=50.27 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=102.3
Q ss_pred hhCCeeEEeccccccccCCCCCCCCChhHHHHHHHhcccccceeeeeeeeecCCCCCCCCCCCCeeeEEEeeeccCCCC-
Q 023967 33 DKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLID- 111 (274)
Q Consensus 33 ~~~~fIAiDtEf~G~~~~~~~~~~~t~e~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~~~FNF~~F~~~~- 111 (274)
.+.+||.+|+|.||+... . =.|||+|.-..+.+++ .....+.+..-+..+
T Consensus 7 ~~~~~v~~D~ETTGL~p~-----~----------------d~IiEIgaV~~d~~~~--------i~~~~~~~~i~~p~~~ 57 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPE-----R----------------DRIIEIATIVTNSHLD--------ILAEGPAFAIHQPDKL 57 (186)
T ss_dssp CTTCEEEEEEEESSSCTT-----T----------------CCEEEEEEEEECTTCC--------EEEECCCEECCCCHHH
T ss_pred CCCcEEEEEEECCCCCCC-----C----------------CceEEEEEEEEcCCeE--------EeeeeEEEEEeCCccc
Confidence 346899999999999422 1 1399999986554333 112223333112211
Q ss_pred -ccchhhhHHHHHHcCCCccchhhcCCChhHHHHHHHH--hcccccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHH
Q 023967 112 -DIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMS--SGIVLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFF 188 (274)
Q Consensus 112 -d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sglv~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~ 188 (274)
+...+.+.+--.-+|+. ++...+|.+..+..+.+.. .+-+...+...|+++-.||.+||-+-+ |
T Consensus 58 l~~~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~-----~------- 124 (186)
T 3tr8_A 58 LTAMDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM-----P------- 124 (186)
T ss_dssp HTTSCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC-----H-------
T ss_pred cccCCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH-----H-------
Confidence 12334454554556876 7777788888776665543 112222445678888899999998864 1
Q ss_pred HHHHccCC-ccccc---hhhhHhhccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHhcC
Q 023967 189 ELINMYFP-VVYDI---KHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENFFN 253 (274)
Q Consensus 189 ~~l~~~FP-~iyDt---K~l~~~~~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~~~ 253 (274)
.+...|+ ++.|+ |.|++.. ..++.. ++ .....|.|=.|+.-|...+.-.++.+|.
T Consensus 125 -~~~~~~~~~~iDvsTl~elar~~---~P~~~~-----~~-~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 125 -RLNQFFHYRHLDVTTLKILAQRW---APQIAA-----AH-IKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp -HHHHHSCSCEEEHHHHHHHHHHH---CHHHHT-----TS-CCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -HcCCCCCCcEEeHHHHHHHHHHH---Cccccc-----cC-CCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 1233454 67883 3344443 112211 33 3466899999999999999888888774
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=96.15 E-value=0.11 Score=51.44 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=62.4
Q ss_pred cccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhcc-c-cccHHHHHHHc-CCccC-
Q 023967 152 VLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNS-L-HGGLNKLAELL-EVERV- 227 (274)
Q Consensus 152 v~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~-l-~~~L~~la~~L-~v~r~- 227 (274)
+.++++.||+|+..+|+.+|.+ .|-++| +.++||..++..+.. . +-+|..|++.+ +++.+
T Consensus 86 L~d~~i~kV~hnak~D~~~L~~--~Gi~l~--------------~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILAN--YGIELR--------------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHHT--TTCCCC--------------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HcCCCCeEEEECcHHHHHHHHH--CCCCCC--------------CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 3455688999999999999887 243332 247899988877742 2 45899999887 76532
Q ss_pred -----CC---------------CcccchhHHHHHHHHHHHHHHhc
Q 023967 228 -----GI---------------CHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 228 -----g~---------------~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
|+ .|-|..|+.+|..+|.+|...+.
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 14588999999999999987664
No 25
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=65.24 E-value=16 Score=34.08 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=61.2
Q ss_pred ccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccccHHHHHHHc-CCccC----
Q 023967 153 LNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAELL-EVERV---- 227 (274)
Q Consensus 153 ~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~~L~~la~~L-~v~r~---- 227 (274)
.++++.+|.|+..+|+..|.+.+ |-. ..+++||...+..+..-+-||..|++.+ ++.--
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~-Gi~---------------~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~ 219 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDL-GLY---------------VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQ 219 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CCC---------------CSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTT
T ss_pred cCCCceEEEEehHHHHHHHHHHc-CCC---------------cCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCcccc
Confidence 46678899999999998887644 322 1258999988877753357899998876 54310
Q ss_pred -----------CCCcccchhHHHHHHHHHHHHHHhcC
Q 023967 228 -----------GICHQAGSDSLLTSCTFRKLRENFFN 253 (274)
Q Consensus 228 -----------g~~HqAGsDs~lT~~~F~~l~~~~~~ 253 (274)
...+-|..|++.+..++-+|...+..
T Consensus 220 ~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 220 LADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123789999999999999888753
No 26
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=58.18 E-value=25 Score=32.05 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=59.3
Q ss_pred ccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccc-cccHHHHHHHc-CCccCC--
Q 023967 153 LNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSL-HGGLNKLAELL-EVERVG-- 228 (274)
Q Consensus 153 ~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l-~~~L~~la~~L-~v~r~g-- 228 (274)
.++++.+|.|+..+|+..|.+.+ |-. ...++||...+..++.- .-||..+++.+ ++.-..
T Consensus 71 ~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~---------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 71 RDPSITKFLHAGSEDLEVFLNVF-GEL---------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp HCTTSEEEESSCHHHHHHHHHHH-SSC---------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTT
T ss_pred cCCCceEEEeeHHHHHHHHHHHc-CCC---------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCc
Confidence 35678899999999998887643 321 12578999888777432 45899998865 643210
Q ss_pred -------------CCcccchhHHHHHHHHHHHHHHhc
Q 023967 229 -------------ICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 229 -------------~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
..+-|..|++.+..++-+|.+.+.
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112378899999999999987764
No 27
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=52.07 E-value=30 Score=32.63 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=59.0
Q ss_pred ccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhccccccHHHHHHH-cCCccC----
Q 023967 153 LNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNSLHGGLNKLAEL-LEVERV---- 227 (274)
Q Consensus 153 ~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~l~~~L~~la~~-L~v~r~---- 227 (274)
.++++.+|.++..+|+..|.+.+ |-. ..+++||...+..+..-+.||..|++. ||++-.
T Consensus 179 ~dp~i~KV~H~~k~Dl~~L~~~~-Gi~---------------~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~ 242 (428)
T 3saf_A 179 TDPAIVKVFHGADSDIEWLQKDF-GLY---------------VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ 242 (428)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CCC---------------CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTT
T ss_pred cCCCceEEEeehHHHHHHHHHHc-CCC---------------cCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCcccc
Confidence 46778899999999998776544 322 135889998888775334689998754 454310
Q ss_pred -----------CCCcccchhHHHHHHHHHHHHHHhc
Q 023967 228 -----------GICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 228 -----------g~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
...+-|..|+..+.+++-+|+..+.
T Consensus 243 ~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 243 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123488999999999999988765
No 28
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=40.74 E-value=37 Score=27.82 Aligned_cols=84 Identities=13% Similarity=-0.050 Sum_probs=54.4
Q ss_pred ccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCcccc-chhhhHhhcc-ccccHHHHHHHc-CCccC--
Q 023967 153 LNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYD-IKHLMKFCNS-LHGGLNKLAELL-EVERV-- 227 (274)
Q Consensus 153 ~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyD-tK~l~~~~~~-l~~~L~~la~~L-~v~r~-- 227 (274)
.++++..|+|+..+|+..|.+.. |-. ..+++| |...+..+.. -.-||+.+++.+ +..-.
T Consensus 93 ~d~~i~Kv~~~~k~D~~~L~~~~-gi~---------------~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~ 156 (208)
T 2e6m_A 93 ENKSIKKAGVGIEGDQWKLLRDF-DVK---------------LESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKD 156 (208)
T ss_dssp TCTTSEEEESSHHHHHHHHHHHH-CCC---------------CCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCC
T ss_pred cCCCceEEEEeeHHHHHHHHHHC-CCC---------------CCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCC
Confidence 45678899999999998887643 322 224889 5444433332 245899998766 53211
Q ss_pred -----------C----CCcccchhHHHHHHHHHHHHHHhc
Q 023967 228 -----------G----ICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 228 -----------g----~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
. ..+-|..|++.+..++-+|....-
T Consensus 157 k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 157 KSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp HHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 123388999999999999887654
No 29
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=35.43 E-value=14 Score=28.92 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=36.0
Q ss_pred EeeccchhHHHHHHHhCCCCC-CCChHHHHHHHHccC---Cccccchhhh
Q 023967 160 VTFHSGYDFGYLLKLLTCRSL-PDTQAGFFELINMYF---PVVYDIKHLM 205 (274)
Q Consensus 160 i~f~g~yD~~yLlk~l~~~~L-P~~~~~F~~~l~~~F---P~iyDtK~l~ 205 (274)
..|-+|.-||-|++.+.|.|+ |+|.+.--..+..-. |.+.|+|.=.
T Consensus 23 A~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V~I 72 (122)
T 2ogf_A 23 AVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKI 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred HHHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 357889999999999999999 998877666655444 8888877543
No 30
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=34.99 E-value=48 Score=23.54 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=28.0
Q ss_pred HHHHcCCccCC---CCcccchhHHHHHHHHHHHHHHhc
Q 023967 218 LAELLEVERVG---ICHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 218 la~~L~v~r~g---~~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
+++.|+++.++ ...+.|.||+.+.+.-.+|++.+-
T Consensus 25 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 62 (93)
T 4i4d_A 25 WAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVD 62 (93)
T ss_dssp HHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhC
Confidence 46778887654 356799999999999999988763
No 31
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=34.18 E-value=64 Score=27.02 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=56.7
Q ss_pred cccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHh-hcc---ccccHHHHHHH-cCCcc
Q 023967 152 VLNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKF-CNS---LHGGLNKLAEL-LEVER 226 (274)
Q Consensus 152 v~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~-~~~---l~~~L~~la~~-L~v~r 226 (274)
+.++++..|.+....|+..|.+.+ |-. | .+++|+..++.. +.. -+-||..+++. ||++-
T Consensus 104 L~d~~i~Kvg~~~~~D~~~L~~~~-g~~-~--------------~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l 167 (206)
T 1vk0_A 104 FASKFVTFVGVQIEEDLDLLRENH-GLV-I--------------RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL 167 (206)
T ss_dssp HTCSSSEEEESSCHHHHHHHHHHH-CCC-C--------------SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC
T ss_pred hcCCCceEEEeccHHHHHHHHHhc-CCC-c--------------CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC
Confidence 347788899999999999887754 311 1 369999777644 432 34589888754 46432
Q ss_pred -C--------------CCCcccchhHHHHHHHHHHHHH
Q 023967 227 -V--------------GICHQAGSDSLLTSCTFRKLRE 249 (274)
Q Consensus 227 -~--------------g~~HqAGsDs~lT~~~F~~l~~ 249 (274)
- .+.+-|-.|++....+|.+|.+
T Consensus 168 K~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 168 GQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1334489999999999999864
No 32
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=32.65 E-value=17 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=35.4
Q ss_pred eeccchhHHHHHHHhCCCCC-CCChHHHHHHHHccC---Cccccchhhh
Q 023967 161 TFHSGYDFGYLLKLLTCRSL-PDTQAGFFELINMYF---PVVYDIKHLM 205 (274)
Q Consensus 161 ~f~g~yD~~yLlk~l~~~~L-P~~~~~F~~~l~~~F---P~iyDtK~l~ 205 (274)
.|-+|.-||-|++.+.|.|+ |+|.+.-.+.+..-. |.+.|+|.=.
T Consensus 19 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V~I 67 (121)
T 2i52_A 19 FFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRISI 67 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred HHHhhhhhhhhhhhccCCccCcccHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 47788999999999999999 998877666655444 8888876543
No 33
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=30.80 E-value=50 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.3
Q ss_pred HHHHcCCccCC---CCcccchhHHHHHHHHHHHHHHh
Q 023967 218 LAELLEVERVG---ICHQAGSDSLLTSCTFRKLRENF 251 (274)
Q Consensus 218 la~~L~v~r~g---~~HqAGsDs~lT~~~F~~l~~~~ 251 (274)
+++.|+++.++ ..-+.|.||+.+.+.-.++++.+
T Consensus 23 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 23 WERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp HHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHH
Confidence 46778887654 34579999999999999998875
No 34
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=25.24 E-value=1.3e+02 Score=29.39 Aligned_cols=84 Identities=11% Similarity=-0.048 Sum_probs=58.6
Q ss_pred ccCceeEEeeccchhHHHHHHHhCCCCCCCChHHHHHHHHccCCccccchhhhHhhcc-c-cccHHHHHHHc-CCcc---
Q 023967 153 LNDVVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELINMYFPVVYDIKHLMKFCNS-L-HGGLNKLAELL-EVER--- 226 (274)
Q Consensus 153 ~~~~~~wi~f~g~yD~~yLlk~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~l~~~~~~-l-~~~L~~la~~L-~v~r--- 226 (274)
.++++.-|.++.-+|+..|.+ .|-.+| +.++||...+..+.. . .-+|..||+.+ +++-
T Consensus 78 ed~~i~KV~hn~K~Dl~vL~~--~Gi~l~--------------g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ 141 (592)
T 3pv8_A 78 GDETKKKSMFDSKRAAVALKW--KGIELC--------------GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPD 141 (592)
T ss_dssp TCTTSEEEESSHHHHHHHHHH--TTCCCC--------------CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCH
T ss_pred hCCCCeEEEechHHHHHHHHH--cCCCCC--------------CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchH
Confidence 356678899999999988766 355544 257899988777742 2 45899998765 4321
Q ss_pred ---CCC------------CcccchhHHHHHHHHHHHHHHhc
Q 023967 227 ---VGI------------CHQAGSDSLLTSCTFRKLRENFF 252 (274)
Q Consensus 227 ---~g~------------~HqAGsDs~lT~~~F~~l~~~~~ 252 (274)
.|. .+-|+.|+..|.+.+-+|...+.
T Consensus 142 ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 142 EAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp HHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 23478899999999998887765
No 35
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=23.97 E-value=83 Score=30.43 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccccchhhhHhh-ccccccHHHHHHHcCCccCCCCcccchhHHHHHHHHHHHHHHh
Q 023967 197 VVYDIKHLMKFC-NSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRENF 251 (274)
Q Consensus 197 ~iyDtK~l~~~~-~~l~~~L~~la~~L~v~r~g~~HqAGsDs~lT~~~F~~l~~~~ 251 (274)
.++||..++..+ +. +-+|..|++.+... ..|.|..|+..|.+.+.+|...+
T Consensus 77 ~~fDT~laAyLL~p~-~~~L~~La~~yl~~---~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 77 PGDDPMLLAYLLDPS-NTTPEGVARRYGGE---WTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp BCCCHHHHHHHHCTT-CCCHHHHHHHHTSC---CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred cceeHHHHHHHhCCC-CCCHHHHHHHHhhh---hccchHHHHHHHHHHHHHHHHHH
Confidence 478999888887 34 67999999887533 23568899999999999998877
No 36
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=22.54 E-value=1.5e+02 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=42.3
Q ss_pred EEcCcccHHHHHHHHHHHhhhCC--eeEEecc------ccccccCCCCCCCCChhHHHHHHHhccc--ccceeeeeee
Q 023967 14 REVWNDNLEEEFALIREIVDKYN--YIAMDTE------FPGVVLRPVGAFKNINDYNYQTLKDNVD--MLKLIQLGLT 81 (274)
Q Consensus 14 ~dVw~~Nf~~el~~I~~~i~~~~--fIAiDtE------f~G~~~~~~~~~~~t~e~~Y~~lr~nv~--~~~iiQlGlt 81 (274)
.+| +.++++.+..+++.++.++ ||++|.- +||+.... +..-+..+--+.+|.-.+ ..+++-+.|+
T Consensus 206 ~ei-~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~--pgGlt~~e~~~il~~l~~~~~~~vvg~Div 280 (330)
T 4g3h_A 206 DAI-RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRE--NNGLSFDELKQLLGLLLESFKDRLKAVEVT 280 (330)
T ss_dssp HHH-HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCC--SSCBCHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred HHh-hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCC--CCCCCHHHHHHHHHHHHhhCCCCEEEEEEE
Confidence 345 5667777888888888765 9999974 47765432 223466666677776666 5566544444
No 37
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=21.97 E-value=62 Score=22.87 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.8
Q ss_pred hhhhHHHHHHcCCCcc-----------------chhhcCCChhHHHHHHHHhcc
Q 023967 115 ASDSVELLHQCGIDFK-----------------KNNEKGIDVNRFGELLMSSGI 151 (274)
Q Consensus 115 ~~~Si~fL~~~GfDFn-----------------k~~~~GI~~~~f~e~l~~Sgl 151 (274)
-|++++.|.+.||++= ....+||+...+-+.|-..|.
T Consensus 22 ~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 22 HPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp CGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 3788999999998875 135578888888877766654
Done!