BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023968
         (274 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B4A|A Chain A, Structure Of The Tatc Core Of The Twin Arginine Protein
           Translocation System
          Length = 249

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 49  DHLEELRQRIFVSVLA--VGAAILGCFAYSKELIMFLEAPVKSE--GVRFLQLAPGEFFF 104
           +HL ELR R+ +S++A  +G+ I   F ++K +   L+ P+      V  + L+P E  F
Sbjct: 5   EHLRELRYRLIISIIAFLIGSGI--AFYFAKYVFEILKEPILKSYPEVELITLSPTEPLF 62

Query: 105 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 164
             +K+S   G ++ SPVILY+   F+ P L   E+R   P++LGS +LF  G  F+Y+++
Sbjct: 63  ILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFXLGALFAYFIV 122

Query: 165 TPAALNFF--VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSD 222
            P AL F   + + + +     S+D Y  FVL L+ + G++F+ P++          T +
Sbjct: 123 LPLALKFLLGLGFTQLLATPYLSVDXYISFVLKLVVAFGIAFEXPIVLYVLQKAGVITPE 182

Query: 223 QMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           Q+ S  +Y           + P  D  TQ+L A PLL LY    ++ KL  R
Sbjct: 183 QLASFRKYFIVIAFVIGAIIAP--DVSTQVLXAIPLLLLYEISIFLGKLATR 232


>pdb|2I5Q|A Chain A, Crystal Structure Of Apo L-Rhamnonate Dehydratase From
           Escherichia Coli
 pdb|2I5Q|B Chain B, Crystal Structure Of Apo L-Rhamnonate Dehydratase From
           Escherichia Coli
          Length = 415

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 21/92 (22%)

Query: 45  MSIFDHLEELRQRIFVSVLAV-----------------GAAILGCFAYSKELIMFLEAPV 87
           MS +   E+LRQ   ++VL                    A  +GCF   K L  F+E   
Sbjct: 51  MSKYRDYEQLRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKC 110

Query: 88  KSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGS 119
            S+    ++L   +    TL  SG  GL++ +
Sbjct: 111 VSD----IKLIHDQMLNATLYYSGSGGLVMNT 138


>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
 pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
 pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
 pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
 pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
           Pea Fructose-1,6-Bisphosphate Phosphatase
 pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
           Pea Fructose-1,6-Bisphosphate Phosphatase
 pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
           Pea Fructose-1,6-Bisphosphate Phosphatase
 pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
           Pea Fructose-1,6-Bisphosphate Phosphatase
          Length = 357

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 28  LYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAIL--GCFAYSKELIMFLEA 85
           ++    P+ E LPD  + S  + L    QR  V+V   G+ +L  G   YS  +I  L  
Sbjct: 143 IFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTI 202

Query: 86  PVKSEGVRFLQLAP--GEFFFT 105
               +GV    L P  GEF  T
Sbjct: 203 ---GKGVFVFTLDPLYGEFVLT 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,391,664
Number of Sequences: 62578
Number of extensions: 274967
Number of successful extensions: 689
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)