Query 023968
Match_columns 274
No_of_seqs 123 out of 1071
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 100.0 2.3E-62 7.8E-67 441.9 21.9 227 45-274 1-232 (249)
2 2l0e_A Sodium/hydrogen exchang 61.2 3.1 0.00011 25.3 1.2 19 235-254 6-24 (33)
3 3qoe_A Heterocyst differentiat 16.3 23 0.00077 31.0 -0.8 26 37-62 171-197 (302)
4 2lm0_A AF4/FMR2 family member 12.4 3.2E+02 0.011 21.4 4.9 36 23-58 36-71 (125)
5 4ea3_A Fusion protein of nocic 10.3 8.3E+02 0.028 21.3 15.7 19 200-218 294-312 (434)
6 4b4a_A TATC, SEC-independent p 8.2 9.4E+02 0.032 20.4 7.3 39 184-222 55-96 (249)
7 2k1e_A Water soluble analogue 8.1 4.9E+02 0.017 18.6 4.5 13 136-148 3-15 (103)
8 3odu_A C-X-C chemokine recepto 8.0 1E+03 0.036 20.8 9.6 18 201-218 215-232 (502)
9 2bm8_A Cephalosporin hydroxyla 7.6 2.9E+02 0.01 22.7 3.4 14 8-21 2-16 (236)
10 3ggz_E Vacuolar protein-sortin 6.8 2.2E+02 0.0076 16.6 1.5 22 34-55 7-28 (29)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-62 Score=441.85 Aligned_cols=227 Identities=34% Similarity=0.605 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeEEcCcchHHHHHHHHHHHHHHHHHHHH
Q 023968 45 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV 121 (274)
Q Consensus 45 m~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~---~~~~li~t~~~E~f~~~lklsl~~~~~~~~P~ 121 (274)
||+.||++|||+|+++++++++++++++|++++++++++.+|..+ ++ ++++|+|+|+|++++|+|++.|+++++|+
T Consensus 1 m~l~~HL~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~~P~~~~~~~~-~li~t~~~e~f~~~lkvs~~~g~~~a~P~ 79 (249)
T 4b4a_A 1 MPLTEHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEV-ELITLSPTEPLFILIKISLAVGFIIASPV 79 (249)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTS-CEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-CeeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999763 23 89999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh--cHHHHHHHHHHHHHH
Q 023968 122 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW--SIDQYFEFVLVLMFS 199 (274)
Q Consensus 122 i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~i~~~~--~i~~Y~~f~~~~~l~ 199 (274)
++||+|+|++||||+||||+.++++..+.++|.+|++|||++++|.+++|+.+++++++++++ ++++|++++++++++
T Consensus 80 ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~ 159 (249)
T 4b4a_A 80 ILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVA 159 (249)
T ss_dssp HHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888888 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023968 200 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274 (274)
Q Consensus 200 fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v~~ 274 (274)
+|++||+|+++++|++.|++|+++++|+|||++++++++||++|| |++||+++|+||++|||+|++++|+++|
T Consensus 160 fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~llaiPl~lLYEisi~i~~~~~~ 232 (249)
T 4b4a_A 160 FGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR 232 (249)
T ss_dssp HHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999998765
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=61.19 E-value=3.1 Score=25.33 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCCCHHHHHHH
Q 023968 235 AVIAAAVLTPSTDPVTQMLL 254 (274)
Q Consensus 235 ~~iiaAiiTP~pDiisqill 254 (274)
.+++||+++| +|+++.+-+
T Consensus 6 ~llfGAiis~-TDpVavlai 24 (33)
T 2l0e_A 6 NLLFGSIISA-VDPVAVLAV 24 (33)
T ss_dssp CCTTHHHHTT-CCHHHHHHH
T ss_pred HHHHHHHccC-CChHHHHHH
Confidence 3578999999 599987654
No 3
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=16.34 E-value=23 Score=31.01 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.8
Q ss_pred CCCCCCcCCCHHHHHHH-HHHHHHHHH
Q 023968 37 ELLPDDKEMSIFDHLEE-LRQRIFVSV 62 (274)
Q Consensus 37 ~~~~~~~~m~l~~HL~E-LR~Rli~~l 62 (274)
++.|.+++||+.|-+.| +|+|++|+-
T Consensus 171 ed~~~~rrmpLSeAlaEHIkRRL~ysg 197 (302)
T 3qoe_A 171 EDLPKEHQMPLSEALAEHIKRRLLYSG 197 (302)
T ss_dssp HSSCTTTCCCCCHHHHHHHHHTTTTTT
T ss_pred hcCChhccCchHHHHHHHHHHHHhhcc
Confidence 57788899999888854 788988765
No 4
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=12.39 E-value=3.2e+02 Score=21.36 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCCCCCccCCCCCCCCCCCCcCCCHHHHHHHHHHHH
Q 023968 23 GVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRI 58 (274)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~m~l~~HL~ELR~Rl 58 (274)
.+|.+|+-..-|++.....+-.+.-.+.|.||..|+
T Consensus 36 RVP~~P~K~nrpkK~~K~g~~~~~y~~~L~~l~~ri 71 (125)
T 2lm0_A 36 RIPQPPGKPMGSDKQIKNGECDKAYLDELVELHRRL 71 (125)
T ss_dssp CCCCCCSSCCCCCCCCCCCCCSCSTHHHHHHHHHHH
T ss_pred cCcCCCCCCCCccccccCCcCCHHHHHHHHHHHHHH
Confidence 555666665566655444444455577777887774
No 5
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=10.31 E-value=8.3e+02 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 023968 200 TGLSFQVPVIQLLLGQVGL 218 (274)
Q Consensus 200 fGl~FqlPli~~~L~~~gi 218 (274)
+.+.+-+|++++......+
T Consensus 294 ~~~~~~ip~~ii~~~y~~I 312 (434)
T 4ea3_A 294 FLFSFIVPVLVISVCYSLM 312 (434)
T ss_dssp HHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456778887777666544
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=8.20 E-value=9.4e+02 Score=20.44 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHH
Q 023968 184 WSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQ---VGLVTSD 222 (274)
Q Consensus 184 ~~i~~Y~~f~~~~~l~fGl~FqlPli~~~L~~---~giv~~~ 222 (274)
.+..|-+..-+++.+..|+..-.|.++.=+.+ -|+-+.+
T Consensus 55 t~~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~E 96 (249)
T 4b4a_A 55 LSPTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHE 96 (249)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Confidence 45667777888888889999999999987764 3454443
No 7
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=8.13 E-value=4.9e+02 Score=18.56 Aligned_cols=13 Identities=15% Similarity=-0.225 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q 023968 136 RAERRFLGPIVLG 148 (274)
Q Consensus 136 ~~Er~~~~~~~~~ 148 (274)
++||+........
T Consensus 3 ~~~r~~l~~~~~~ 15 (103)
T 2k1e_A 3 DHEREAQKAEEEL 15 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5788876554444
No 8
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=8.02 E-value=1e+03 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 023968 201 GLSFQVPVIQLLLGQVGL 218 (274)
Q Consensus 201 Gl~FqlPli~~~L~~~gi 218 (274)
.+.|-+|++++...+..+
T Consensus 215 ~~~~~~p~~ii~~~y~~I 232 (502)
T 3odu_A 215 MVGLILPGIVILSCYCII 232 (502)
T ss_dssp HHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888777665544
No 9
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=7.61 E-value=2.9e+02 Score=22.74 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=10.3
Q ss_pred CCCCCcccc-ccccc
Q 023968 8 TDIPRDETL-ENLNQ 21 (274)
Q Consensus 8 ~~~~~~~~~-~~~~~ 21 (274)
+||||++-| +|.=.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (236)
T 2bm8_A 2 NDYSRQNFQDLNLFR 16 (236)
T ss_dssp CTTTTCCCCCGGGGT
T ss_pred cchhhhhhhhHHHHh
Confidence 799999977 55443
No 10
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=6.82 E-value=2.2e+02 Score=16.60 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCCCCCCCCcCCCHHHHHHHHH
Q 023968 34 PDKELLPDDKEMSIFDHLEELR 55 (274)
Q Consensus 34 ~~~~~~~~~~~m~l~~HL~ELR 55 (274)
|..+...+++|--|-+-|+.||
T Consensus 7 ~~~~~~~eekEDkLAqRLRALR 28 (29)
T 3ggz_E 7 AKEVNVDDEKEDKLAQRLRALR 28 (29)
T ss_pred cccCCccchhhHHHHHHHHHHc
Confidence 3334466677777888888887
Done!