Query 023968
Match_columns 274
No_of_seqs 123 out of 1071
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lghb_ f.3.1.1 (B:) Light-har 10.4 1.7E+02 0.012 17.1 5.3 32 132-163 4-35 (43)
2 d2ff4a1 a.4.6.1 (A:10-104) Pro 8.9 60 0.0044 21.4 1.4 21 38-58 54-74 (95)
3 d1gjja2 a.140.1.1 (A:111-153) 8.5 33 0.0024 20.5 -0.2 26 6-31 1-26 (43)
4 d1ppjd2 f.23.11.1 (D:196-241) 8.4 2.1E+02 0.015 16.8 4.5 33 51-83 3-35 (46)
5 d1pyya2 d.11.1.1 (A:693-750) P 8.0 26 0.0019 21.7 -0.8 20 5-24 5-24 (58)
6 d1v54l_ f.23.6.1 (L:) Mitochon 7.3 1.9E+02 0.014 17.1 3.0 28 184-211 12-39 (46)
7 d1t7ra_ a.123.1.1 (A:) Androge 6.8 1.3E+02 0.0097 23.3 2.9 41 22-66 11-51 (250)
8 d1jo5a_ f.3.1.1 (A:) Light-har 6.7 1.5E+02 0.011 17.8 2.4 32 132-163 9-40 (48)
9 d2e2ra1 a.123.1.1 (A:234-456) 6.1 2.7E+02 0.02 20.9 4.4 38 24-65 12-49 (223)
10 d1z67a1 a.259.1.1 (A:3-131) Hy 5.5 29 0.0021 25.6 -2.0 48 8-58 80-128 (129)
No 1
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=10.40 E-value=1.7e+02 Score=17.15 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023968 132 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 163 (274)
Q Consensus 132 PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ 163 (274)
.||.+.|-+=+-+...-+...|.....++...
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiL 35 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVL 35 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999898888888888877777644
No 2
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.88 E-value=60 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.0
Q ss_pred CCCCCcCCCHHHHHHHHHHHH
Q 023968 38 LLPDDKEMSIFDHLEELRQRI 58 (274)
Q Consensus 38 ~~~~~~~m~l~~HL~ELR~Rl 58 (274)
+++++.+.++.-|+..||+.+
T Consensus 54 ~~~~~~~~~L~~~v~~LRk~L 74 (95)
T d2ff4a1 54 WPPSGARASIHSYVSNLRKLL 74 (95)
T ss_dssp CCCTTHHHHHHHHHHHHHHHH
T ss_pred CccCCCcEEEEEEHHHHHHHH
Confidence 344455677999999999986
No 3
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.52 E-value=33 Score=20.48 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.5
Q ss_pred ccCCCCCcccccccccCCCCCCCccC
Q 023968 6 DVTDIPRDETLENLNQDGVESPLYNF 31 (274)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (274)
|+++...+|-...+.+-|.++-|.+.
T Consensus 1 d~~~Lsd~eLr~~L~~~G~~~GPIt~ 26 (43)
T d1gjja2 1 DVTELTNEDLLDQLVKYGVNPGPIVG 26 (43)
T ss_dssp CCEEECHHHHHHEEEBTTCCCCCCCS
T ss_pred ChhhcCHHHHHHHHHHcCCCCCCcCc
Confidence 56667778888899999999999883
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.37 E-value=2.1e+02 Score=16.79 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 023968 51 LEELRQRIFVSVLAVGAAILGCFAYSKELIMFL 83 (274)
Q Consensus 51 L~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l 83 (274)
.+|=++-.+++++.+.+.++.+|+.+.....-+
T Consensus 3 ~d~RK~mG~Kv~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 3 HDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344445556777777777777877776665554
No 5
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=8.02 E-value=26 Score=21.71 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=16.4
Q ss_pred cccCCCCCcccccccccCCC
Q 023968 5 LDVTDIPRDETLENLNQDGV 24 (274)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (274)
=|++.|+.+||...+++-|-
T Consensus 5 Pdl~G~s~~~A~~~l~~~gl 24 (58)
T d1pyya2 5 PDMYGWTKETAETLAKWLNI 24 (58)
T ss_dssp CCCTTCBHHHHHHHHHHTTC
T ss_pred CCcCCCcHHHHHHHHHHcCC
Confidence 48999999999988877654
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.29 E-value=1.9e+02 Score=17.12 Aligned_cols=28 Identities=14% Similarity=0.453 Sum_probs=19.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023968 184 WSIDQYFEFVLVLMFSTGLSFQVPVIQL 211 (274)
Q Consensus 184 ~~i~~Y~~f~~~~~l~fGl~FqlPli~~ 211 (274)
+++++=......+++.||..|-.|.+++
T Consensus 12 Fsv~Nk~rLla~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 12 FSVENKWRLLAMMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccccchHHHH
Confidence 3445555566777888899999998764
No 7
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan troglodytes) [TaxId: 9598]}
Probab=6.82 E-value=1.3e+02 Score=23.30 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCCCCCCccCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Q 023968 22 DGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVG 66 (274)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~m~l~~HL~ELR~Rli~~li~~~ 66 (274)
++||+..+. .++.. .| +.+-.+.+|+.|+-.|.+...+-+.
T Consensus 11 ~~ep~~~~~--~~~~~-~p-~~~~~~l~~l~~~a~~~L~~~Vewa 51 (250)
T d1t7ra_ 11 AIEPGVVCA--GHDNN-QP-DSFAALLSSLNELGERQLVHVVKWA 51 (250)
T ss_dssp HHCCCCCCC--CCCTT-SC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcccC--CCCCC-CC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 44433 33 3334567999999999988877663
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.71 E-value=1.5e+02 Score=17.82 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023968 132 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 163 (274)
Q Consensus 132 PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ 163 (274)
.||.+.|-+=+-+...-+...|.....++...
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L 40 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLA 40 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889998888888888888888877777644
No 9
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.08 E-value=2.7e+02 Score=20.87 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=24.1
Q ss_pred CCCCCccCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Q 023968 24 VESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAV 65 (274)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~m~l~~HL~ELR~Rli~~li~~ 65 (274)
||+.+|. .|++ +.|+ .+-....|+-|+-.|.+...+-+
T Consensus 12 ep~~~~~--~~~~-~~~~-~~~~~~~~l~~~a~~~l~~~V~w 49 (223)
T d2e2ra1 12 EPEKIYA--MPDP-TVPD-SDIKALTTLCDLADRELVVIIGW 49 (223)
T ss_dssp CCCCCCC--CCCT-TSCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccC--CCCC-CCCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5552 3332 34467899999999988877655
No 10
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=5.52 E-value=29 Score=25.63 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCCCCcccccccccCCCCCCCccCCCCCCCCCCCCcCCCHHHH-HHHHHHHH
Q 023968 8 TDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDH-LEELRQRI 58 (274)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~H-L~ELR~Rl 58 (274)
|.+|++|+...+++. =|..+|.++|+.+-+ ++.+-.+..+ +.=|+.|+
T Consensus 80 ~Gl~~~~~~~~LA~~--LP~~Vd~lTP~G~lP-~~~~~dl~~~g~~~l~g~l 128 (129)
T d1z67a1 80 LGVDTSTASSLLAEQ--LPKIIDALSPQGEVS-AQANNDLLSAGMELLKGKL 128 (129)
T ss_dssp HTCCHHHHHHHHHHH--HHHHHHHTCTTSCC---CTTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHH--hHHHHhccCCCCCCC-CCccchHHHHHHHHHhhhc
Confidence 456777777777653 466788999996644 4444556665 55555554
Done!