BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023970
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/273 (74%), Positives = 237/273 (86%)
Query: 1 MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
MKKP+NHGVPYSLTE+FTSVYRMH+LLPD L++ DID PG NKS P +++ M +L+G
Sbjct: 378 MKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGR 437
Query: 61 KGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVY 120
KGE+ +S IGF K +VSMGHQA GALEL NYP+WLRD++P + +G RPDHVDLAALE+Y
Sbjct: 438 KGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIY 497
Query: 121 RDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKK 180
RDRER RYNEFRR++ +IPI+KWEDLTED+EAIEVL++VY DVEELDL VGLMAEKK
Sbjct: 498 RDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKK 557
Query: 181 IKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240
IKGFAISETAF IFL+MA+RRLEADRFFTS FNE YTKKGLEWVNTTESLKDV+ RHYP
Sbjct: 558 IKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYP 617
Query: 241 EITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVP 273
++T+KWMNS SAFSVWDSPP + NPIPLYLR+P
Sbjct: 618 DMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIP 650
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 44/222 (19%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 352 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 395
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 396 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 439
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETA- 190
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK ET
Sbjct: 440 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGETMV 498
Query: 191 -----FVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNT 227
F + +LM + + S+F E G + +NT
Sbjct: 499 ELGAPFSLKVLMGNPICSPQYWKPSTFGGEV----GFKIINT 536
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 346 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 390 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 434 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 346 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 390 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 434 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 346 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 390 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 434 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 346 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 390 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 434 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 350 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 393
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 394 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 437
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 438 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 484
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 351 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 394
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 395 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 438
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 439 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 485
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 346 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 390 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 434 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 350 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 393
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 394 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 437
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 438 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 484
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 351 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 394
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 395 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 438
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 439 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 485
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 363 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 406
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 407 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 450
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 451 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 497
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF ++Y H LLPDT N+ D + S ++ N + L G
Sbjct: 369 IASEFNTLYHWHPLLPDTFNIEDQEY---------SFKQFLYNNSI-------LLEHGLT 412
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVD-LAALEVYRDRERKAARYN 131
+ + S Q G + G + P V +A + + RE K N
Sbjct: 413 QFVESFTRQIAGRV----------------AGGRNVPIAVQAVAKASIDQSREMKYQSLN 456
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ L P + +E+LT +KE L +Y D++ ++L L+ EK
Sbjct: 457 EYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 503
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 377 IAMEFNQLYHFHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 420
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 421 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 464
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 465 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 511
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 357 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 400
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 401 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 444
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 445 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 491
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 346 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 390 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 434 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 346 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 390 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 434 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 345 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 388
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 389 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 432
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 433 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 346 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 389
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 390 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 433
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 434 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 345 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 388
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 389 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 432
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 433 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 345 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 388
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 389 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 432
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 433 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 353 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 396
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 397 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 440
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 441 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 487
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 353 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 396
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 397 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 440
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 441 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 487
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)
Query: 13 LTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFE 72
+ EF +Y H L+PD+ + GP S E+ L G E
Sbjct: 377 IAMEFNQLYHWHPLMPDSFRV-------GPQDY--SYEQFLFNT-------SMLVDYGVE 420
Query: 73 KRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRD-RERKAARYN 131
+ + Q G + G + H+ A++V ++ R + +N
Sbjct: 421 ALVDAFSRQPAGRI----------------GGGRNIDHHILHVAVDVIKESRVLRLQPFN 464
Query: 132 EFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
E+R+ + P + +++LT +KE L E+YG D++ L+ GL+ EK
Sbjct: 465 EYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DIDALEFYPGLLLEK 511
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 138 LLIPISKWEDLTEDKEAIEVLNE-VYGDDVEELDLQVGLMAEKKIKGFAISETAFVIF 194
L P+ K E++ + A ++ +YG D+E++ ++ L A K KG A+ E A VI+
Sbjct: 120 FLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKV-VETFLEAVKNFKGSAVKEVALVIY 176
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 138 LLIPISKWEDLTEDKEAIEVLNE-VYGDDVEELDLQVGLMAEKKIKGFAISETAFVIF 194
L P+ K E++ + A ++ +YG D+E++ ++ L A K KG A+ E A VI+
Sbjct: 120 FLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKV-VETFLEAVKNFKGSAVKEVALVIY 176
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 124 ERKAARYNEFRRALLLIPISKWEDLTE 150
E ARY+ +RR+ + +P +WE L +
Sbjct: 76 EESRARYDHWRRSQMSMPFQQWEALND 102
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 73 KRIVSMGHQACG--ALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARY 130
KR+V GH ACG A L + L L D ++ R + +L+ + +D +
Sbjct: 377 KRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEI 436
Query: 131 NEFRRALLLIPISKWEDLTEDKEAIEVLNEVYG 163
N + + S +D + + +EV VYG
Sbjct: 437 NVLEQMHNVCATSIVQDAWDAGQELEVQGVVYG 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,796,584
Number of Sequences: 62578
Number of extensions: 355779
Number of successful extensions: 1060
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 55
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)