Query 023970
Match_columns 274
No_of_seqs 133 out of 941
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02283 alpha-dioxygenase 100.0 1.1E-69 2.4E-74 539.6 21.7 273 2-274 361-633 (633)
2 KOG2408 Peroxidase/oxygenase [ 100.0 5.5E-65 1.2E-69 511.9 14.6 254 3-271 451-712 (719)
3 PF03098 An_peroxidase: Animal 100.0 3.6E-62 7.8E-67 481.7 13.7 233 3-253 291-530 (530)
4 KOG1712 Adenine phosphoribosyl 65.9 2.4 5.3E-05 36.1 0.5 56 143-202 26-89 (183)
5 PF08880 QLQ: QLQ; InterPro: 45.5 15 0.00033 23.4 1.6 26 215-240 1-26 (37)
6 KOG0358 Chaperonin complex com 35.0 22 0.00049 34.4 1.6 38 151-190 198-235 (534)
7 PHA03260 Capsid triplex subuni 25.3 70 0.0015 29.8 3.0 69 151-240 210-282 (339)
8 KOG0941 E3 ubiquitin protein l 24.4 44 0.00096 35.3 1.7 41 121-163 591-643 (850)
9 KOG4021 Mitochondrial ribosoma 21.1 52 0.0011 29.0 1.3 25 114-138 155-185 (239)
10 COG2257 Uncharacterized homolo 19.8 1.4E+02 0.003 23.0 3.2 17 113-129 32-48 (92)
No 1
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1.1e-69 Score=539.60 Aligned_cols=273 Identities=82% Similarity=1.327 Sum_probs=246.6
Q ss_pred CCCCCCCCCCchhHHHHHHhhhhcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhc
Q 023970 2 KKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQ 81 (274)
Q Consensus 2 ~~~~~~~v~p~Is~EF~aafRfHSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q 81 (274)
++++|++|+++|++||+||||||||||+.+.+.+..+.....+.++..+.+++.++++..+...+.+.|++.+++||+.|
T Consensus 361 ~~~~~~~v~~~is~EF~aaYR~Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q 440 (633)
T PLN02283 361 KKPNNHGVPYSLTEEFTSVYRMHSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQ 440 (633)
T ss_pred CccccCCCCcchhHHHHHHHhhhhcCCCceecccccccccccccccccccccHHHHHhhcccccccccCHHHHHHHHhhc
Confidence 45678899999999999999999999999988876553322222234567899999876554555678999999999999
Q ss_pred hhcccccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCCCCHHHHHHHHHH
Q 023970 82 ACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEV 161 (274)
Q Consensus 82 ~a~~~d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~~~~~~~~~L~~l 161 (274)
++++++.+|++..+++.+.++..|..++.|+||+|+|||||||||||+||+||++|||+++++|+||+++++++++|+++
T Consensus 441 ~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~d~e~~~~L~~l 520 (633)
T PLN02283 441 ACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTDDEEAIEVLREV 520 (633)
T ss_pred chhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCCCHHHHHHHHHH
Confidence 99999999999999998777666655568999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCCC
Q 023970 162 YGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPE 241 (274)
Q Consensus 162 Y~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~~ 241 (274)
|+++|||||||||+++|++++|+.+|||++||++.||+|+++|||||||+++|++||++|++||++++||++|||||.++
T Consensus 521 Y~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~np~~fT~~gl~~I~~t~tl~dvl~r~~p~ 600 (633)
T PLN02283 521 YGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYPE 600 (633)
T ss_pred hCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCCcCcCCHHHHHHHHccCcHHHHHHHhCcc
Confidence 97579999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred CccccccCCCcccccCCCCCCCCCccccccCCC
Q 023970 242 ITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ 274 (274)
Q Consensus 242 ~~~~~~~q~n~F~~~~~~~~~~~~~~~~~~~~~ 274 (274)
++..|+...|||++|+..+.++++||||||+|.
T Consensus 601 ~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~~ 633 (633)
T PLN02283 601 MTDKWMNSSSAFSVWDSPPNPHNWIPLYLRPPP 633 (633)
T ss_pred hhhhhhhcccCCCcCCCCCCCCCccceeeccCC
Confidence 999999999999999988899999999999984
No 2
>KOG2408 consensus Peroxidase/oxygenase [General function prediction only]
Probab=100.00 E-value=5.5e-65 Score=511.88 Aligned_cols=254 Identities=26% Similarity=0.366 Sum_probs=229.1
Q ss_pred CCCCCCCCCchhHHH-HHHhhh-hcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHh
Q 023970 3 KPENHGVPYSLTEEF-TSVYRM-HALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGH 80 (274)
Q Consensus 3 ~~~~~~v~p~Is~EF-~aafRf-HSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~ 80 (274)
.-|+++++|+|+||| +||||| |||||+.+.+.+.++++.. ....+++.+.+++++ .++.++|+|.+++||++
T Consensus 451 ~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~-~i~~~ggid~llrGl~~ 524 (719)
T KOG2408|consen 451 RGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIG-----EVVNLPLHDAFFNPW-LILNEGGIDPLLRGLTT 524 (719)
T ss_pred cCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccc-----cccCchhhhhhcchh-hhhhccChhHHHHHHHh
Confidence 358999999999999 799998 9999999999999886431 223678899999875 57788999999999999
Q ss_pred chhccc-ccCCccHHHHhccCCCCCCCCCCCc-hhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCCC--CHHHHH
Q 023970 81 QACGAL-ELWNYPLWLRDLIPQNTDGTDRPDH-VDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTE--DKEAIE 156 (274)
Q Consensus 81 q~a~~~-d~~~~~~~l~~~lf~~~~g~~~~~g-~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~~--~~~~~~ 156 (274)
++++.. |. .++.++++.+|..... .+ +||+|||||||||||||+||+||++|||+++++|+||.+ ++++++
T Consensus 525 ~~~~~~~d~-~~~~~i~~~lf~~~~~----~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~ 599 (719)
T KOG2408|consen 525 QPAKMPDDQ-LLNGEITERLFVKTDE----DGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIIN 599 (719)
T ss_pred chhhcccch-hcCHHHHHHHhhhcCc----ccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHH
Confidence 999999 55 7899999999986654 34 999999999999999999999999999999999999998 567999
Q ss_pred HHHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHH
Q 023970 157 VLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLH 236 (274)
Q Consensus 157 ~L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic 236 (274)
+|+.+|+ +|||||||||+++|++++|+++|||++|||++||.|+++||||||||++|+.||++||+||||+ ||++|||
T Consensus 600 kl~~lY~-~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~~~~~Ft~~QL~ei~k~-sLariiC 677 (719)
T KOG2408|consen 600 KLRTLYG-TPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENFNPGVFTPEQLEEIRKV-SLARIIC 677 (719)
T ss_pred HHHHhcC-CchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecCCCCCccCHHHHHHHHHh-hchheee
Confidence 9999999 9999999999999999999999999999999999999999999999988999999999999999 9999999
Q ss_pred hhCCCCccccccCCCccc--ccCCCCCCCCCcccccc
Q 023970 237 RHYPEITEKWMNSTSAFS--VWDSPPNSHNPIPLYLR 271 (274)
Q Consensus 237 ~n~~~~~~~~~~q~n~F~--~~~~~~~~~~~~~~~~~ 271 (274)
+|.+.+... ++.++|. .+.....||+.||.+..
T Consensus 678 ~N~~~~~~~--~~~~~f~~~~~~~~~~~c~~ip~~dl 712 (719)
T KOG2408|consen 678 DNGTKITKV--SRFDVFDFPDAPNDPVPCSSIPGLDL 712 (719)
T ss_pred cCCcccccc--cccCCccccccCCCCCCccccchhhh
Confidence 997778764 5669994 45588999999998753
No 3
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=3.6e-62 Score=481.74 Aligned_cols=233 Identities=28% Similarity=0.417 Sum_probs=198.0
Q ss_pred CCCCCCCCCchhHHH-HHHhhh-hcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHh
Q 023970 3 KPENHGVPYSLTEEF-TSVYRM-HALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGH 80 (274)
Q Consensus 3 ~~~~~~v~p~Is~EF-~aafRf-HSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~ 80 (274)
+.|+++++|+|++|| +||||| |||||+.+.+++.++.. ....++|.+.+++|...++.++|++.+++|+++
T Consensus 291 ~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~-------~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~ 363 (530)
T PF03098_consen 291 KGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEI-------PEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLAS 363 (530)
T ss_dssp TTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBE-------TTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHH
T ss_pred cCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccCCc-------ccccccccccccCcchhhhhccchHHHHhHHhh
Confidence 579999999999999 899999 99999999999887621 246789999999875235677899999999999
Q ss_pred chhcccc--cCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCC---CCCHHHH
Q 023970 81 QACGALE--LWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDL---TEDKEAI 155 (274)
Q Consensus 81 q~a~~~d--~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl---~~~~~~~ 155 (274)
|+++++| . .+.++|++.+|...+. +..+||+|+|||||||||||+||+||++|||+++++|+|| .++++++
T Consensus 364 ~~a~~~d~~~-~~~~~l~~~lf~~~~~---~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~ 439 (530)
T PF03098_consen 364 QPAQKVDNPR-FLVDDLRNHLFGPRNV---PGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIA 439 (530)
T ss_dssp SEEEHHBTTB-HSHHHHHTSEESTTSS---SEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHH
T ss_pred CccccccHHH-HhhhHhhcccccccCC---cchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHH
Confidence 9999999 6 6888999999965443 1336999999999999999999999999999999999999 5589999
Q ss_pred HHHHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHH
Q 023970 156 EVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVL 235 (274)
Q Consensus 156 ~~L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~ii 235 (274)
++|+++|+ +|||||||+|+|+|++++|+.+|||++|||++||.|+++||||||| +|++||++|+++||++ ||++||
T Consensus 440 ~~L~~~Y~-~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~ye--n~~~ft~~ql~~i~~~-tla~ii 515 (530)
T PF03098_consen 440 AALRALYG-HVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYE--NPGSFTPEQLEEIRKT-TLARII 515 (530)
T ss_dssp HHHHHHHS-SGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTT--SCTTCTHHHHHHHTTT--HHHHH
T ss_pred HHHHHhcc-chhcccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCccccc--CcCcCCHHHHHHHHHC-CHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999 5799999999999999 999999
Q ss_pred HhhCCCCccccccCCCcc
Q 023970 236 HRHYPEITEKWMNSTSAF 253 (274)
Q Consensus 236 c~n~~~~~~~~~~q~n~F 253 (274)
|+|++++.. ||+|||
T Consensus 516 c~n~~~~~~---iq~~~F 530 (530)
T PF03098_consen 516 CDNTDDITR---IQPNAF 530 (530)
T ss_dssp HHHSTS-SE---EESSTT
T ss_pred HhcCCcccc---CCCCCC
Confidence 999998865 999998
No 4
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=65.89 E-value=2.4 Score=36.13 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=36.6
Q ss_pred CCccCCCC---CHHH----HHHHHHHhcCCC-CcccccccccccccCCCCCCchHHHHHHHHHHHHhh
Q 023970 143 SKWEDLTE---DKEA----IEVLNEVYGDDV-EELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRL 202 (274)
Q Consensus 143 ~sF~dl~~---~~~~----~~~L~~lY~~~v-ddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~ 202 (274)
--|+|++. ||.. +..+...|+++. ..||..+|. |.+ |.++||+.+--++--|.-.|
T Consensus 26 I~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGl--EaR--GFLFGP~iAlalG~~fVPiR 89 (183)
T KOG1712|consen 26 IMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGL--EAR--GFLFGPSIALALGAGFVPIR 89 (183)
T ss_pred eehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEee--eec--ceecCcHHHHHhCCCeeecc
Confidence 36888876 7654 555555555323 349988885 444 99999998766655454444
No 5
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.54 E-value=15 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHccCCcHHHHHHhhCC
Q 023970 215 ETYTKKGLEWVNTTESLKDVLHRHYP 240 (274)
Q Consensus 215 ~~Ft~~ql~eIr~~~tla~iic~n~~ 240 (274)
+.||+.|++++|.--..-+.|.+|.+
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~~p 26 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARNQP 26 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999985256778887774
No 6
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=22 Score=34.44 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHhcCCCCcccccccccccccCCCCCCchHH
Q 023970 151 DKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETA 190 (274)
Q Consensus 151 ~~~~~~~L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~ 190 (274)
|-..++..+++=| ++||.+++-|.+++....++. |||=
T Consensus 198 dlkdIkivkklGg-tvdDte~i~glvl~~~~~~~~-gptr 235 (534)
T KOG0358|consen 198 DLKDIKIVKKLGG-TVDDTELIKGLVLTQKASKSA-GPTR 235 (534)
T ss_pred chhhhhhHHhhCC-ccchhhhhcceEEeeecccCC-Ccch
Confidence 4567788888887 999999999999999988866 9984
No 7
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=25.35 E-value=70 Score=29.76 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHH----c
Q 023970 151 DKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWV----N 226 (274)
Q Consensus 151 ~~~~~~~L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eI----r 226 (274)
...+...|++||. ..- + .-..+.|+..|-+...||++ +..-+. +. ...+.-|.|| +
T Consensus 210 ~~a~q~gi~~LY~-a~~-L-------~a~tiD~A~~p~~~~aii~~-Y~~f~e-------gk---n~dP~tL~ei~~lw~ 269 (339)
T PHA03260 210 CDALQFALHQLYS-AFK-L-------HAIFIDGAAQPTTAAAIIAA-YADFVE-------GK---NAEPPSLDEMKGLIA 269 (339)
T ss_pred CcHHHHHHHHHHH-hHH-H-------HHHhhhhhhCCchHHHHHHH-HHHHhc-------cC---CCCchHHHHHHHHhc
Confidence 6789999999998 554 2 22456688888889999987 222221 12 2345556666 5
Q ss_pred cCCcHHHHHHhhCC
Q 023970 227 TTESLKDVLHRHYP 240 (274)
Q Consensus 227 ~~~tla~iic~n~~ 240 (274)
.. .+++|+|+-.+
T Consensus 270 d~-~vadLf~Dgm~ 282 (339)
T PHA03260 270 DA-KLKMLMCDGMA 282 (339)
T ss_pred CH-HHHHHHHHHHH
Confidence 56 99999999876
No 8
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=44 Score=35.32 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHhhcCchhHH-----------HHHHHhCCCCCCCccCCCC-CHHHHHHHHHHhc
Q 023970 121 RDRERKAARYN-----------EFRRALLLIPISKWEDLTE-DKEAIEVLNEVYG 163 (274)
Q Consensus 121 RgRDhGlp~YN-----------~~R~~cgl~~~~sF~dl~~-~~~~~~~L~~lY~ 163 (274)
-|+=.||+-|| -|++.|+.++ +|+||.. .|...+.|+++-.
T Consensus 591 iGil~GLAIyN~~ildlpFPlAlykkLl~~~~--sl~DL~elsP~~~~sL~~lL~ 643 (850)
T KOG0941|consen 591 IGILCGLAIYNNTILDLPFPLALYKKLLDKPP--SLEDLKELSPSLGKSLKELLD 643 (850)
T ss_pred hhHHHHHHHhccceecCCCcHHHHHHHhcCCC--CHHHHHhhChHhhhhHHHHHh
Confidence 46677899888 4999999988 9999988 8889998988864
No 9
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=52 Score=28.97 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCchhHH------HHHHHhC
Q 023970 114 LAALEVYRDRERKAARYN------EFRRALL 138 (274)
Q Consensus 114 L~al~IqRgRDhGlp~YN------~~R~~cg 138 (274)
++..-||++||||+-.|. +|+++.|
T Consensus 155 rL~~a~qkArdhG~lty~VpfR~~Dys~~yg 185 (239)
T KOG4021|consen 155 RLRAALQKARDHGTLTYGVPFRNFDYSQWYG 185 (239)
T ss_pred HHHHHHHHhhhcCeEEecCCcccCchHHhcc
Confidence 455669999999988774 4555554
No 10
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=19.78 E-value=1.4e+02 Score=23.03 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhhcCchh
Q 023970 113 DLAALEVYRDRERKAAR 129 (274)
Q Consensus 113 DL~al~IqRgRDhGlp~ 129 (274)
-++.--|+++++||+|-
T Consensus 32 ~iAe~II~~Ake~~Vpi 48 (92)
T COG2257 32 EIAEKIIEKAKEHGVPI 48 (92)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 56667799999999993
Done!