Query 023970
Match_columns 274
No_of_seqs 133 out of 941
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 4.4E-66 1.5E-70 500.5 17.0 245 4-267 203-456 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 3.7E-66 1.3E-70 512.4 15.4 247 4-268 330-584 (595)
3 1q4g_A Prostaglandin G/H synth 100.0 1.6E-55 5.6E-60 434.2 13.9 207 8-256 341-552 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 6.1E-55 2.1E-59 431.4 12.9 207 8-259 341-555 (587)
5 1tke_A Threonyl-tRNA synthetas 26.2 24 0.00083 29.6 1.5 35 204-240 99-133 (224)
6 3h1d_A E3 ubiquitin-protein li 21.1 37 0.0013 31.6 1.8 36 132-169 163-199 (405)
7 1qf6_A THRRS, threonyl-tRNA sy 18.3 89 0.0031 30.6 4.0 34 205-240 100-133 (642)
8 3r8n_R 30S ribosomal protein S 17.5 43 0.0015 22.3 1.0 19 113-131 34-52 (55)
9 1zvd_A SMAD ubiquitination reg 16.9 72 0.0024 29.3 2.7 35 132-168 140-175 (380)
10 1nyr_A Threonyl-tRNA synthetas 15.0 87 0.003 30.6 2.9 35 204-240 101-135 (645)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=4.4e-66 Score=500.47 Aligned_cols=245 Identities=18% Similarity=0.191 Sum_probs=219.7
Q ss_pred CCCCCCCCchhHHHHHHhhh-hcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhch
Q 023970 4 PENHGVPYSLTEEFTSVYRM-HALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQA 82 (274)
Q Consensus 4 ~~~~~v~p~Is~EF~aafRf-HSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q~ 82 (274)
-|+++|+|+|++||+||||| |||||+.+.+++.++... .....++|.+.+++|. .++.+.|++.+++||++|+
T Consensus 203 gy~~~v~p~isnEF~aafRfgHsli~~~~~~~~~~~~~~-----~~~~~~~l~~~~f~~~-~~~~~~g~d~~lrgl~~q~ 276 (466)
T 1d2v_C 203 SYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPM-----EPNPRVPLSRVFFASW-RVVLEGGIDPILRGLMATP 276 (466)
T ss_dssp CCCTTSCCSCBHHHHHHGGGGGGGCCSEEECBCTTSSBC-----SSCSEEEGGGTTTCHH-HHHHTTCHHHHHHHHHHSE
T ss_pred CCCCCCCCchhHHHHHHHhcccccCchhhcccccccccc-----CCCCceeHHHHhcChH-HHhhccCchHHHHHHhhCc
Confidence 48899999999999999998 999999999998876421 1245789999999875 4667789999999999999
Q ss_pred hc--ccccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCC---CCHHHHHH
Q 023970 83 CG--ALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLT---EDKEAIEV 157 (274)
Q Consensus 83 a~--~~d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~---~~~~~~~~ 157 (274)
++ +.|. .+.++|+++||.... ..|+||+|+|||||||||||+||+||++|||+++++|+||+ ++++++++
T Consensus 277 a~~~~~d~-~l~~~l~~~lf~~~~----~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~ 351 (466)
T 1d2v_C 277 AKLNRQNQ-IAVDEIRERLFEQVM----RIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARK 351 (466)
T ss_dssp EECCBTTB-CSCHHHHTCBTGGGS----SSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHH
T ss_pred cccccCch-hhhHHHHHHhhcccC----ccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHH
Confidence 98 4566 789999999997654 37899999999999999999999999999999999999999 58999999
Q ss_pred HHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHh
Q 023970 158 LNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHR 237 (274)
Q Consensus 158 L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~ 237 (274)
|+++|+ +|||||||||+|+|++++|+.+||||+|||++||.|+++|||||||| |+.||++|++|||++ ||++|||+
T Consensus 352 L~~lY~-~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen--~~~ft~~ql~ei~~~-sl~~iic~ 427 (466)
T 1d2v_C 352 LMEQYG-TPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWEN--EGVFSMQQRQALAQI-SLPRIICD 427 (466)
T ss_dssp HHHHHS-SGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTS--TTTSCHHHHHHHTTC-CHHHHHHH
T ss_pred HHHHhC-CccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCcccccC--CCcccchhhHHHHhC-CHHHHHHh
Confidence 999999 99999999999999999999999999999999999999999999996 899999999999999 99999999
Q ss_pred hCCCCccccccCCC-cccccC--CCCCCCCCcc
Q 023970 238 HYPEITEKWMNSTS-AFSVWD--SPPNSHNPIP 267 (274)
Q Consensus 238 n~~~~~~~~~~q~n-~F~~~~--~~~~~~~~~~ 267 (274)
|+ +++. +|+| ||...+ +...+|+.||
T Consensus 428 n~-~~~~---iq~~~~F~~~~~~n~~~~C~~ip 456 (466)
T 1d2v_C 428 NT-GITT---VSKNNIFMSNSYPRDFVNCSTLP 456 (466)
T ss_dssp HS-SCCE---EECSCTTTCCSTTTTEEEGGGSC
T ss_pred cC-CCcc---cCCCccccCCCCCCCCcCcccCC
Confidence 99 5764 8999 998554 2345888887
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=3.7e-66 Score=512.43 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=221.5
Q ss_pred CCCCCCCCchhHHHHHHhhh-hcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhch
Q 023970 4 PENHGVPYSLTEEFTSVYRM-HALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQA 82 (274)
Q Consensus 4 ~~~~~v~p~Is~EF~aafRf-HSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q~ 82 (274)
-|+++|+|+|++||+||||| |||||+.+.+++.++... .....++|.+.||+|. .++.+.|+|.+++||++|+
T Consensus 330 gY~~~v~p~i~neF~aafRfgHsli~~~~~~~~~~~~~~-----~~~~~~~L~~~ff~~~-~~~~~~gid~llrGl~~q~ 403 (595)
T 3q9k_A 330 GYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPW-----GPEAELPLHTLFFNTW-RIIKDGGIDPLVRGLLAKK 403 (595)
T ss_dssp CCCTTSCCCCBTTHHHHGGGGGGGCCSEEECBCTTSSBC-----STTCEEEGGGGBTCCH-HHHTTTCSHHHHHHHHHSE
T ss_pred CCCCCCCCccHHHHHHHHHhHHhhCcchhhccCcccccc-----CCCCceeHHHHhcChH-HhhhccchHHHHHHHhhCc
Confidence 58999999999999999999 999999999998876432 1235789999999875 4667789999999999999
Q ss_pred hc--ccccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCC---CCHHHHHH
Q 023970 83 CG--ALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLT---EDKEAIEV 157 (274)
Q Consensus 83 a~--~~d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~---~~~~~~~~ 157 (274)
++ +.|. +++++|+++||..... ..|+||+|+|||||||||||+||+||++|||+++++|+||+ ++++++++
T Consensus 404 a~~~~~d~-~~~~~l~~~Lf~~~~~---~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~ 479 (595)
T 3q9k_A 404 SKLMNQDK-MVTSELRNKLFQPTHK---IHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKK 479 (595)
T ss_dssp EECCCTTS-CSCHHHHTCEECTTSC---SEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHH
T ss_pred ccccCCCc-cCCHHHHHHhccCCCc---cccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHH
Confidence 99 6676 7999999999976543 24899999999999999999999999999999999999999 58999999
Q ss_pred HHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHh
Q 023970 158 LNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHR 237 (274)
Q Consensus 158 L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~ 237 (274)
|+++|+ +|||||||||+|+|++++|+.+||||+|||++||.|+++|||||||| |+.||++|++||||+ ||++|||+
T Consensus 480 l~~lY~-~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~yen--~~~ft~~ql~ei~~~-sla~iic~ 555 (595)
T 3q9k_A 480 LMDLYK-TPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN--PGVFTEKQRDSLQKV-SFSRLICD 555 (595)
T ss_dssp HHHHHS-SGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTTS--BTTBCHHHHHHHTTC-CHHHHHHH
T ss_pred HHHHhC-CccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeecC--CCcCCHHHHHHHHhC-CHHHHHhc
Confidence 999999 99999999999999999999999999999999999999999999997 789999999999999 99999999
Q ss_pred hCCCCccccccCCCcccccC--CCCCCCCCccc
Q 023970 238 HYPEITEKWMNSTSAFSVWD--SPPNSHNPIPL 268 (274)
Q Consensus 238 n~~~~~~~~~~q~n~F~~~~--~~~~~~~~~~~ 268 (274)
|+ +++. +|+|||.... +...+|+.||-
T Consensus 556 n~-~i~~---vq~~~F~~~~~~n~~v~C~~ip~ 584 (595)
T 3q9k_A 556 NT-HITK---VPLHAFQANNYPHDFVDCSTVDK 584 (595)
T ss_dssp HS-SCCE---EESSTTSCCCTTTTEEEGGGSCC
T ss_pred CC-Cccc---ccHhhccCCCCCCCCccCCCCCC
Confidence 96 5764 9999998433 45667888874
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=1.6e-55 Score=434.23 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=183.8
Q ss_pred CCCCchhHHHHHHhhhhcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhchhccc-
Q 023970 8 GVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGAL- 86 (274)
Q Consensus 8 ~v~p~Is~EF~aafRfHSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q~a~~~- 86 (274)
.++|+|++||++|||||||||+.+.+.+ ..++|.+++|+| .++.+.|++++++||+.|+++++
T Consensus 341 ~~~~~is~EF~~ayR~Hslip~~~~~~~--------------~~~~l~~~ff~~--~~~~~~g~~~ll~g~~~q~a~~~~ 404 (553)
T 1q4g_A 341 QYRNRIAMEFNQLYHWHPLMPDSFRVGP--------------QDYSYEQFLFNT--SMLVDYGVEALVDAFSRQPAGRIG 404 (553)
T ss_dssp CCCCCCBHHHHHHTCCGGGSCSSEEETT--------------EEECHHHHTTCS--SHHHHHCHHHHHHHHHHSBCBCSS
T ss_pred ccCcchhHHHHHHhcccccCCcccccCC--------------CcccHHHHhcCc--hhhhcccHHHHHHHhhhchhhccc
Confidence 4788999999778999999999987643 246899999987 35677999999999999999999
Q ss_pred ccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCCCCHHHHHHHHHHhcCCC
Q 023970 87 ELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDV 166 (274)
Q Consensus 87 d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~~~~~~~~~L~~lY~~~v 166 (274)
+.++++ ..++||+|+|||||||||||+||+||++|||+++++|+||+++++++++|+++|+ +|
T Consensus 405 ~~~n~~----------------~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~d~~~~~~L~~lY~-~~ 467 (553)
T 1q4g_A 405 GGRNID----------------HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG-DI 467 (553)
T ss_dssp SSSCBC----------------TTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHSSSHHHHHHHHHHS-SG
T ss_pred ccccCc----------------HHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcCCHHHHHHHHHHhc-Ch
Confidence 543332 2578999999999999999999999999999999999999999999999999999 99
Q ss_pred CcccccccccccccCCCCCCchHHHHHHHHHHHHhh----cCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCCCC
Q 023970 167 EELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRL----EADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEI 242 (274)
Q Consensus 167 ddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~----~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~~~ 242 (274)
||||||||+|+|++++|+++||||+|||++||++++ ++||||| +|++||++|+.||+|+.||++|||+|++
T Consensus 468 ddiDL~vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~---~~~~ft~~ql~ei~~~~sla~iic~n~~-- 542 (553)
T 1q4g_A 468 DALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW---KASTFGGEVGFNLVKTATLKKLVCLNTK-- 542 (553)
T ss_dssp GGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTC---SGGGGTSHHHHHHHHTCCHHHHHHTTSS--
T ss_pred hhccccccccccccCCCCCccHHHHHHHHHHHHHHHhhCcCCCcccc---CCCCcCHHHHHHHHHhCCHHHHHHHcCC--
Confidence 999999999999999999999999999999877765 3899888 3789999999999763399999999997
Q ss_pred ccccccCCCccccc
Q 023970 243 TEKWMNSTSAFSVW 256 (274)
Q Consensus 243 ~~~~~~q~n~F~~~ 256 (274)
. +|.++|..+
T Consensus 543 -~---~p~~~F~~p 552 (553)
T 1q4g_A 543 -T---CPYVSFHVP 552 (553)
T ss_dssp -S---CCCCCSBCC
T ss_pred -C---CCcccccCC
Confidence 2 899999865
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=6.1e-55 Score=431.36 Aligned_cols=207 Identities=23% Similarity=0.380 Sum_probs=180.6
Q ss_pred CCCCchhHHHHHHhhhhcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhchhcccc
Q 023970 8 GVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALE 87 (274)
Q Consensus 8 ~v~p~Is~EF~aafRfHSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q~a~~~d 87 (274)
+++|+|++||++|||||||||+.+.+.+ ..++|.+++|+| .++.+.|++++++||++|+|+++|
T Consensus 341 ~~~~~is~eF~~a~~~Hslip~~~~~~~--------------~~~~l~~~ff~p--~~~~~~gid~llrgl~~q~a~~~~ 404 (587)
T 3nt1_A 341 QYQNRIASEFNTLYHWHPLLPDTFNIED--------------QEYSFKQFLYNN--SILLEHGLTQFVESFTRQIAGRVA 404 (587)
T ss_dssp CSCCCCBHHHHHHTCCGGGSCSSEEETT--------------EEECHHHHTTCT--HHHHHHHHHHHHHHHHHSBCBCSS
T ss_pred CcCchHHHHHHHHHhccccCCcccccCC--------------CcccHHHHhcCc--cccchhhHHHHHHHHHHhhhhccc
Confidence 4689999999877888999999987642 357899999986 466779999999999999999986
Q ss_pred c-CCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCCCCHHHHHHHHHHhcCCC
Q 023970 88 L-WNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDV 166 (274)
Q Consensus 88 ~-~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~~~~~~~~~L~~lY~~~v 166 (274)
. +|++ ..++||+|+|||||||||||+||+||++|||+++++|+||+++++++++|+++|+ +|
T Consensus 405 ~~~n~~----------------~~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~~~~~~~~L~~lY~-~~ 467 (587)
T 3nt1_A 405 GGRNVP----------------IAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYS-DI 467 (587)
T ss_dssp SSSCBC----------------GGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHSSSHHHHHHHHHHS-SG
T ss_pred ccccCc----------------hHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCCCHHHHHHHHHHhC-CH
Confidence 3 2221 2678999999999999999999999999999999999999999999999999999 99
Q ss_pred CcccccccccccccCCCCCCchHHHHHHHHHH------HHhhcCCcccccCCCCCCCCHHH-HHHHccCCcHHHHHHhhC
Q 023970 167 EELDLQVGLMAEKKIKGFAISETAFVIFLLMA------SRRLEADRFFTSSFNEETYTKKG-LEWVNTTESLKDVLHRHY 239 (274)
Q Consensus 167 ddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~------~r~~~gDRf~ye~~~p~~Ft~~q-l~eIr~~~tla~iic~n~ 239 (274)
||||||||+++|++++|+++||||+|| +.|| .+.+.||||| +|++||.+| +++||++ ||++|||+|+
T Consensus 468 ddIDL~vGglaE~~~pG~~vGpTf~ci-~~qf~l~~~~~~~r~gDrfw----~~~~Ft~~qgl~~I~~~-sL~~lic~N~ 541 (587)
T 3nt1_A 468 DVMELYPALLVEKPRPDAIFGETMVEL-GAPFSLKGLMGNPICSPQYW----KPSTFGGEVGFKIINTA-SIQSLICNNV 541 (587)
T ss_dssp GGCCHHHHHHHSCCSTTCSSCHHHHHH-HHHHHHHHHHTSGGGSTTTS----SGGGGTSHHHHHHHHTC-CHHHHHHHHS
T ss_pred hheeeecccccccCCCCccHHHHHHHH-HHHHHHHHHhcCcccCCccc----CcCccChHHHHHHHHHC-CHHHHHHhCC
Confidence 999999999999999999999999999 5664 4456899999 467999877 9999999 9999999999
Q ss_pred CCCccccccCCCcccccCCC
Q 023970 240 PEITEKWMNSTSAFSVWDSP 259 (274)
Q Consensus 240 ~~~~~~~~~q~n~F~~~~~~ 259 (274)
+. ++.++|...+..
T Consensus 542 ~~------~p~~~F~~p~~~ 555 (587)
T 3nt1_A 542 KG------CPFTSFNVQDPQ 555 (587)
T ss_dssp TT------CCCCCSBCC---
T ss_pred CC------CCcceeECCCcc
Confidence 74 688999876653
No 5
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=26.19 E-value=24 Score=29.65 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCC
Q 023970 204 ADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240 (274)
Q Consensus 204 gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~ 240 (274)
+|+|||+-..+..+|++++++|.+. +.+||.+|.+
T Consensus 99 ~~g~y~d~~~~~~~t~edl~~IE~~--m~~iI~~~~p 133 (224)
T 1tke_A 99 DNGFYYDVDLDRTLTQEDVEALEKR--MHELAEKNYD 133 (224)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHH--HHHHHTTCCB
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHH--HHHHHhCCCC
Confidence 4667776533456999999999985 8999988886
No 6
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=21.05 E-value=37 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHhCCCCCCCccCCCC-CHHHHHHHHHHhcCCCCcc
Q 023970 132 EFRRALLLIPISKWEDLTE-DKEAIEVLNEVYGDDVEEL 169 (274)
Q Consensus 132 ~~R~~cgl~~~~sF~dl~~-~~~~~~~L~~lY~~~vddV 169 (274)
-|++.+|.+. +++||.. |+++.+.|+.+.+++++|+
T Consensus 163 f~K~Llg~~~--~l~DL~~~Dp~l~~sL~~ll~~~~~~l 199 (405)
T 3h1d_A 163 FYKHILGKSV--RYTDMESEDYHFYQGLVYLLENDVSTL 199 (405)
T ss_dssp HHHHHHTCCC--CGGGHHHHCHHHHHHHHHHHHSCGGGS
T ss_pred HHHHhcCCCC--CHHHHHHhhHHHHHHHhhhhcCChhhh
Confidence 3888888764 8899987 9999999999988677765
No 7
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=18.32 E-value=89 Score=30.65 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=27.7
Q ss_pred CcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCC
Q 023970 205 DRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240 (274)
Q Consensus 205 DRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~ 240 (274)
|+|||+-..+..+|++++.+|.+. +.+||..|.+
T Consensus 100 ~gfy~Df~~~~~~t~edl~~IE~~--m~~iI~~~~~ 133 (642)
T 1qf6_A 100 NGFYYDVDLDRTLTQEDVEALEKR--MHELAEKNYD 133 (642)
T ss_dssp TEEEEEEECSSCCCHHHHHHHHHH--HHHHHHHTCB
T ss_pred CeeEEEEeCCCCCCHHHHHHHHHH--HHHHHHcCCC
Confidence 678887644567999999999985 8888888876
No 8
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=17.53 E-value=43 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhhcCchhHH
Q 023970 113 DLAALEVYRDRERKAARYN 131 (274)
Q Consensus 113 DL~al~IqRgRDhGlp~YN 131 (274)
-.++.-|.|+|..||=||.
T Consensus 34 R~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 34 RQLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 4577889999999998774
No 9
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=16.86 E-value=72 Score=29.28 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHHHhCCCCCCCccCCCC-CHHHHHHHHHHhcCCCCc
Q 023970 132 EFRRALLLIPISKWEDLTE-DKEAIEVLNEVYGDDVEE 168 (274)
Q Consensus 132 ~~R~~cgl~~~~sF~dl~~-~~~~~~~L~~lY~~~vdd 168 (274)
-|+..+|.+. +++||.. |+++.+.|+.+.++++++
T Consensus 140 f~k~llg~~~--~l~Dl~~~Dp~l~~sL~~ll~~d~~~ 175 (380)
T 1zvd_A 140 FYKQLLGKSI--TLDDMELVDPDLHNSLVWILENDITG 175 (380)
T ss_dssp HHHHHTTCCC--CSTTHHHHCHHHHHHHHHHHHSCCTT
T ss_pred HHHHHhCCCC--CHHHHHHhCHHHHHHHHHHHhCCccc
Confidence 5777777654 7889987 999999999999877776
No 10
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=15.01 E-value=87 Score=30.62 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCC
Q 023970 204 ADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240 (274)
Q Consensus 204 gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~ 240 (274)
.|+|||+-..+..+|++++.+|.+. +..||..|.+
T Consensus 101 ~~g~~~Df~~~~~~t~edl~~IE~~--m~~iI~~~~p 135 (645)
T 1nyr_A 101 EGGFYYDFDIDQNISSDDFEQIEKT--MKQIVNENMK 135 (645)
T ss_dssp TTEEEEEEECSSCCCSTTHHHHHHH--HHHHHHTTCC
T ss_pred CCceEEEecCCCCCCHHHHHHHHHH--HHHHHHhCCC
Confidence 4778887644567999999999985 9999999986
Done!