Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023971
MNSLFLPSSLLLFPSCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQLSLSTR
KTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKV
LVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV
VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQM
TLQKAAGNHCFQIDNFVDESGFYLVVLKFSKSKN

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023971
        (274 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064596 - symbol:AT2G41950 "AT2G41950" species...   678  1.4e-68   2


>TAIR|locus:2064596 [details] [associations]
            symbol:AT2G41950 "AT2G41950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009505 "plant-type cell wall" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] GO:GO:0009570
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009505 EMBL:U90439
            EMBL:AY074625 EMBL:AY954827 IPI:IPI00547694 PIR:B84848
            RefSeq:NP_181726.1 UniGene:At.48580 UniGene:At.70281
            ProteinModelPortal:O23684 STRING:O23684 PaxDb:O23684 PRIDE:O23684
            DNASU:818795 EnsemblPlants:AT2G41950.1 GeneID:818795
            KEGG:ath:AT2G41950 TAIR:At2g41950 eggNOG:NOG250472
            HOGENOM:HOG000239872 InParanoid:O23684 OMA:VKCWQGE PhylomeDB:O23684
            ProtClustDB:CLSN2683801 ArrayExpress:O23684 Genevestigator:O23684
            Uniprot:O23684
        Length = 266

 Score = 678 (243.7 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
 Identities = 140/232 (60%), Positives = 165/232 (71%)

Query:    46 SHSLKPS-LQLSLST----RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKE 100
             SH   P  L  S S     R   + ++SPP EGTVSVV   DF E DWSFL+S E++  E
Sbjct:    38 SHLFSPQHLSFSQSNVSRYRAFCVSSSSPP-EGTVSVV---DFHEKDWSFLESMEIDSTE 93

Query:   101 HIQRIDQIISAGEIDESSKVLVSISSEEFVDRXXXXX-XXXXXXXHDSLFVLAGIKEKYD 159
             H Q+I++II AGE+ ESS+VLVSISSE FVDR             HDSLF LA IKEKYD
Sbjct:    94 HTQKIERIIKAGELSESSRVLVSISSETFVDRLVESSPSQLLLIVHDSLFTLACIKEKYD 153

Query:   160 TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE 219
              VKCWQGE+IYVP+KW PLD VFLYFLPA+PF LD++F+TL+ RCS GARVVISHPQGR 
Sbjct:   154 KVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTLSQRCSSGARVVISHPQGRL 213

Query:   220 ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271
              L++QRK+F DV+VSDLPD+ TL   A  H F++  FVDE G YL VLK SK
Sbjct:   214 GLEQQRKEFSDVVVSDLPDESTLSNVAEKHSFELTQFVDEQGLYLAVLKSSK 265

 Score = 36 (17.7 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query:    41 NLPTLSHSLKPSLQLSLSTRKTSI 64
             + P+ S +L PSL    S+R+ S+
Sbjct:     5 SFPSSSSALLPSLVAFDSSRRLSL 28


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       243   0.00097  113 3  11 22  0.42    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.99u 0.08s 21.07t   Elapsed:  00:00:01
  Total cpu time:  20.99u 0.08s 21.07t   Elapsed:  00:00:01
  Start:  Sat May 11 05:13:50 2013   End:  Sat May 11 05:13:51 2013

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