Query 023971
Match_columns 274
No_of_seqs 181 out of 1340
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 3.7E-38 8E-43 285.4 18.3 188 78-267 15-233 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 1.5E-36 3.2E-41 273.9 9.7 183 77-262 10-224 (233)
3 KOG1540 Ubiquinone biosynthesi 100.0 6.1E-33 1.3E-37 251.7 17.1 206 54-260 38-284 (296)
4 PLN02233 ubiquinone biosynthes 100.0 3.1E-30 6.7E-35 235.5 19.3 191 77-269 36-259 (261)
5 PRK05785 hypothetical protein; 100.0 2.5E-27 5.3E-32 212.4 15.8 186 77-269 12-224 (226)
6 TIGR02752 MenG_heptapren 2-hep 99.9 1.2E-26 2.6E-31 205.4 17.0 192 77-269 7-231 (231)
7 PLN02244 tocopherol O-methyltr 99.9 1E-22 2.2E-27 192.6 20.8 155 103-260 100-280 (340)
8 PRK10258 biotin biosynthesis p 99.9 3.6E-23 7.9E-28 186.0 16.5 151 100-252 26-181 (251)
9 PRK14103 trans-aconitate 2-met 99.9 5.9E-23 1.3E-27 185.6 16.0 152 104-258 17-184 (255)
10 PTZ00098 phosphoethanolamine N 99.9 6.7E-23 1.5E-27 187.4 16.1 159 104-263 40-207 (263)
11 PLN02490 MPBQ/MSBQ methyltrans 99.9 4.2E-22 9.2E-27 189.1 20.5 179 77-263 77-261 (340)
12 PLN02396 hexaprenyldihydroxybe 99.9 7E-22 1.5E-26 186.3 19.5 179 77-256 81-287 (322)
13 PRK11036 putative S-adenosyl-L 99.9 8.4E-22 1.8E-26 178.3 16.4 181 79-262 5-211 (255)
14 TIGR01934 MenG_MenH_UbiE ubiqu 99.9 2.1E-21 4.5E-26 168.8 17.6 186 79-266 4-218 (223)
15 PRK00216 ubiE ubiquinone/menaq 99.9 2.7E-21 5.9E-26 169.8 18.0 190 78-269 15-236 (239)
16 PRK01683 trans-aconitate 2-met 99.9 2.7E-21 5.8E-26 174.3 17.5 168 88-257 4-186 (258)
17 PF08241 Methyltransf_11: Meth 99.9 6.4E-22 1.4E-26 149.1 8.7 92 121-212 1-95 (95)
18 PRK11873 arsM arsenite S-adeno 99.9 1.8E-20 3.9E-25 170.6 16.4 147 112-259 73-231 (272)
19 PRK15068 tRNA mo(5)U34 methylt 99.9 2.4E-20 5.2E-25 175.6 17.3 156 106-262 112-278 (322)
20 PLN02336 phosphoethanolamine N 99.8 1.4E-20 3.1E-25 184.0 15.5 158 105-263 255-419 (475)
21 TIGR00452 methyltransferase, p 99.8 3E-20 6.6E-25 174.7 16.7 154 106-262 111-277 (314)
22 PLN02232 ubiquinone biosynthes 99.8 8E-21 1.7E-25 161.6 11.2 121 142-262 1-151 (160)
23 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.9E-20 4.1E-25 169.2 13.7 139 114-254 54-226 (247)
24 PRK08317 hypothetical protein; 99.8 1.7E-19 3.6E-24 157.4 18.0 154 104-258 7-176 (241)
25 PF13489 Methyltransf_23: Meth 99.8 1.2E-20 2.7E-25 155.6 10.2 136 114-255 20-160 (161)
26 TIGR00740 methyltransferase, p 99.8 1.7E-19 3.7E-24 161.4 16.1 140 114-255 51-224 (239)
27 TIGR02072 BioC biotin biosynth 99.8 2.2E-19 4.8E-24 157.2 15.9 141 115-258 33-176 (240)
28 PRK06202 hypothetical protein; 99.8 1.4E-18 3E-23 154.9 17.2 140 113-255 57-219 (232)
29 PF13847 Methyltransf_31: Meth 99.8 2E-19 4.3E-24 150.2 10.0 134 115-250 2-152 (152)
30 PF12847 Methyltransf_18: Meth 99.8 1.3E-19 2.8E-24 142.3 7.2 99 116-214 1-111 (112)
31 PRK00107 gidB 16S rRNA methylt 99.8 5.7E-18 1.2E-22 148.4 17.7 158 87-269 12-186 (187)
32 TIGR02021 BchM-ChlM magnesium 99.8 2.4E-18 5.2E-23 151.9 14.6 179 78-261 7-209 (219)
33 PRK11207 tellurite resistance 99.8 3.6E-18 7.8E-23 149.7 15.0 141 107-258 21-170 (197)
34 smart00828 PKS_MT Methyltransf 99.8 2E-18 4.4E-23 152.1 12.7 141 118-263 1-149 (224)
35 PRK11088 rrmA 23S rRNA methylt 99.8 1.6E-17 3.4E-22 152.1 16.7 96 115-217 84-184 (272)
36 PRK04266 fibrillarin; Provisio 99.8 3.9E-17 8.3E-22 147.1 18.3 147 110-269 66-225 (226)
37 PRK05134 bifunctional 3-demeth 99.8 2.7E-17 5.8E-22 146.0 16.4 180 77-257 9-204 (233)
38 TIGR02081 metW methionine bios 99.7 9E-17 2E-21 139.8 17.4 139 115-258 12-167 (194)
39 PTZ00146 fibrillarin; Provisio 99.7 5.3E-17 1.2E-21 151.3 16.6 169 82-273 104-290 (293)
40 COG2227 UbiG 2-polyprenyl-3-me 99.7 1E-17 2.2E-22 151.5 9.7 175 77-255 17-212 (243)
41 TIGR02716 C20_methyl_CrtF C-20 99.7 6.9E-17 1.5E-21 149.8 15.0 149 105-256 138-304 (306)
42 TIGR00477 tehB tellurite resis 99.7 6E-17 1.3E-21 141.7 13.2 142 107-259 21-170 (195)
43 TIGR01983 UbiG ubiquinone bios 99.7 1.1E-16 2.3E-21 140.7 14.5 177 80-257 5-202 (224)
44 PLN02585 magnesium protoporphy 99.7 1.5E-16 3.2E-21 149.9 16.3 158 101-264 126-306 (315)
45 PRK11705 cyclopropane fatty ac 99.7 8.1E-17 1.8E-21 155.1 13.6 156 103-263 154-317 (383)
46 KOG1270 Methyltransferases [Co 99.7 2.4E-17 5.2E-22 150.7 8.9 177 77-258 39-249 (282)
47 PF13649 Methyltransf_25: Meth 99.7 1.2E-17 2.6E-22 130.5 5.7 89 120-208 1-101 (101)
48 COG4106 Tam Trans-aconitate me 99.7 1.3E-16 2.9E-21 142.7 13.1 155 103-258 17-186 (257)
49 PRK08287 cobalt-precorrin-6Y C 99.7 8.2E-16 1.8E-20 132.9 17.7 128 104-255 19-153 (187)
50 PRK00121 trmB tRNA (guanine-N( 99.7 1E-16 2.2E-21 141.1 12.2 100 116-215 40-157 (202)
51 TIGR02469 CbiT precorrin-6Y C5 99.7 2.7E-16 5.8E-21 124.5 13.4 110 101-213 4-121 (124)
52 TIGR03587 Pse_Me-ase pseudamin 99.7 1.5E-16 3.3E-21 140.8 13.2 106 105-215 34-143 (204)
53 PF02353 CMAS: Mycolic acid cy 99.7 1.9E-16 4E-21 146.4 13.2 156 101-262 47-221 (273)
54 smart00138 MeTrc Methyltransfe 99.7 1.6E-16 3.6E-21 145.7 12.3 111 106-216 89-244 (264)
55 PLN02336 phosphoethanolamine N 99.7 1.7E-16 3.6E-21 155.3 12.8 145 105-254 26-178 (475)
56 PRK12335 tellurite resistance 99.7 4.1E-16 8.9E-21 144.0 14.0 135 115-260 119-261 (287)
57 TIGR00138 gidB 16S rRNA methyl 99.7 9E-16 2E-20 133.5 14.5 95 116-215 42-143 (181)
58 PF08242 Methyltransf_12: Meth 99.7 8E-18 1.7E-22 130.4 1.3 90 121-210 1-99 (99)
59 PRK07580 Mg-protoporphyrin IX 99.7 8.6E-16 1.9E-20 135.2 13.9 142 114-260 61-216 (230)
60 TIGR00091 tRNA (guanine-N(7)-) 99.7 5.4E-16 1.2E-20 135.5 12.1 100 116-215 16-133 (194)
61 PRK06922 hypothetical protein; 99.7 3.4E-16 7.5E-21 158.6 11.8 104 112-215 414-538 (677)
62 TIGR00537 hemK_rel_arch HemK-r 99.7 2.4E-15 5.1E-20 129.1 14.6 127 112-260 15-167 (179)
63 PRK00517 prmA ribosomal protei 99.6 2.2E-15 4.8E-20 136.6 14.1 130 114-269 117-249 (250)
64 PRK00377 cbiT cobalt-precorrin 99.6 5.6E-15 1.2E-19 129.2 16.1 106 105-213 29-144 (198)
65 KOG4300 Predicted methyltransf 99.6 3.6E-16 7.8E-21 139.1 8.2 150 115-266 75-242 (252)
66 PRK13944 protein-L-isoaspartat 99.6 1.8E-15 4E-20 133.3 11.8 104 104-213 60-172 (205)
67 PF07021 MetW: Methionine bios 99.6 3.7E-15 7.9E-20 131.3 13.4 141 113-258 10-167 (193)
68 COG2230 Cfa Cyclopropane fatty 99.6 4.9E-15 1.1E-19 137.5 14.8 188 71-263 25-228 (283)
69 TIGR03438 probable methyltrans 99.6 1.3E-14 2.8E-19 135.2 17.6 107 105-213 54-176 (301)
70 PRK14967 putative methyltransf 99.6 2.1E-14 4.5E-19 127.8 17.8 165 104-270 24-223 (223)
71 PRK13942 protein-L-isoaspartat 99.6 4.2E-15 9.1E-20 131.9 13.3 106 103-214 63-176 (212)
72 PRK11188 rrmJ 23S rRNA methylt 99.6 5.6E-15 1.2E-19 131.1 12.6 107 105-217 39-168 (209)
73 TIGR00080 pimt protein-L-isoas 99.6 7.3E-15 1.6E-19 130.0 13.2 104 104-213 65-176 (215)
74 TIGR03534 RF_mod_PrmC protein- 99.6 4.6E-14 9.9E-19 125.6 16.9 134 103-258 75-241 (251)
75 TIGR01177 conserved hypothetic 99.6 2.5E-14 5.4E-19 134.6 14.5 112 103-215 169-295 (329)
76 PRK14968 putative methyltransf 99.6 6.4E-14 1.4E-18 119.1 15.6 123 114-257 21-172 (188)
77 PRK07402 precorrin-6B methylas 99.6 6.4E-14 1.4E-18 122.1 14.6 107 105-215 29-143 (196)
78 PRK14121 tRNA (guanine-N(7)-)- 99.6 3E-14 6.5E-19 137.6 13.1 108 107-214 113-235 (390)
79 PF05401 NodS: Nodulation prot 99.6 7.4E-14 1.6E-18 123.5 13.9 155 105-272 31-199 (201)
80 PF08003 Methyltransf_9: Prote 99.5 6E-14 1.3E-18 131.2 13.3 156 104-260 103-269 (315)
81 PRK13255 thiopurine S-methyltr 99.5 1.3E-13 2.9E-18 123.4 14.0 143 106-259 27-191 (218)
82 TIGR03840 TMPT_Se_Te thiopurin 99.5 7.3E-14 1.6E-18 124.7 12.0 143 105-258 23-187 (213)
83 TIGR00406 prmA ribosomal prote 99.5 1.6E-13 3.5E-18 127.1 14.1 121 114-259 157-284 (288)
84 PRK15001 SAM-dependent 23S rib 99.5 4.1E-13 8.8E-18 129.5 16.8 127 86-213 197-339 (378)
85 KOG1541 Predicted protein carb 99.5 2.9E-13 6.3E-18 121.7 14.2 170 78-269 13-203 (270)
86 TIGR03533 L3_gln_methyl protei 99.5 1E-12 2.2E-17 121.8 18.0 130 115-266 120-282 (284)
87 COG4976 Predicted methyltransf 99.5 7.5E-15 1.6E-19 132.5 3.5 176 77-259 87-266 (287)
88 PRK09328 N5-glutamine S-adenos 99.5 5.8E-13 1.3E-17 120.6 15.5 132 104-256 96-260 (275)
89 PRK10901 16S rRNA methyltransf 99.5 3.7E-13 7.9E-18 131.1 15.0 108 107-214 235-372 (427)
90 PRK00312 pcm protein-L-isoaspa 99.5 3.2E-13 6.8E-18 118.9 13.1 105 104-215 66-176 (212)
91 PLN03075 nicotianamine synthas 99.5 2.6E-13 5.6E-18 126.9 13.2 107 109-215 116-234 (296)
92 PRK13943 protein-L-isoaspartat 99.5 2.6E-13 5.7E-18 128.3 11.9 104 104-213 68-179 (322)
93 COG2242 CobL Precorrin-6B meth 99.5 2.9E-12 6.4E-17 112.4 17.5 109 101-213 19-134 (187)
94 PRK14901 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 127.6 16.9 107 108-214 244-384 (434)
95 PF13659 Methyltransf_26: Meth 99.5 1.4E-13 3E-18 108.9 7.8 98 117-214 1-115 (117)
96 TIGR00438 rrmJ cell division p 99.5 3E-13 6.6E-18 117.1 10.5 105 105-215 20-147 (188)
97 PRK09489 rsmC 16S ribosomal RN 99.5 1.9E-12 4.2E-17 123.2 16.6 106 106-213 186-302 (342)
98 PHA03411 putative methyltransf 99.4 1.2E-12 2.5E-17 121.4 13.5 126 114-253 62-209 (279)
99 TIGR00563 rsmB ribosomal RNA s 99.4 8.5E-13 1.9E-17 128.4 13.1 109 107-215 229-369 (426)
100 PRK14903 16S rRNA methyltransf 99.4 1.1E-12 2.3E-17 128.3 13.9 161 110-270 231-430 (431)
101 TIGR03704 PrmC_rel_meth putati 99.4 3.7E-12 8.1E-17 116.1 16.4 131 116-267 86-248 (251)
102 KOG3010 Methyltransferase [Gen 99.4 1.6E-13 3.5E-18 124.4 7.4 104 104-212 23-135 (261)
103 COG2264 PrmA Ribosomal protein 99.4 2.5E-12 5.5E-17 120.3 15.6 142 100-269 151-299 (300)
104 PRK14966 unknown domain/N5-glu 99.4 4.5E-12 9.9E-17 123.5 17.3 134 103-258 240-406 (423)
105 TIGR00536 hemK_fam HemK family 99.4 4.8E-12 1E-16 116.9 16.5 113 103-216 100-246 (284)
106 PF01135 PCMT: Protein-L-isoas 99.4 4E-13 8.7E-18 119.9 9.0 105 103-213 59-171 (209)
107 PF03848 TehB: Tellurite resis 99.4 1.1E-12 2.5E-17 115.8 10.5 143 107-260 21-171 (192)
108 PRK14904 16S rRNA methyltransf 99.4 3.3E-12 7.1E-17 125.1 14.4 105 109-214 243-377 (445)
109 PF05175 MTS: Methyltransferas 99.4 7.3E-13 1.6E-17 113.5 8.2 104 109-213 24-139 (170)
110 PRK14902 16S rRNA methyltransf 99.4 1.5E-11 3.2E-16 120.3 17.4 107 108-214 242-379 (444)
111 cd02440 AdoMet_MTases S-adenos 99.4 3.3E-12 7.1E-17 94.6 9.5 95 119-213 1-103 (107)
112 COG2518 Pcm Protein-L-isoaspar 99.4 5E-12 1.1E-16 112.9 12.1 103 104-213 60-168 (209)
113 PRK11805 N5-glutamine S-adenos 99.4 1.5E-11 3.3E-16 115.4 15.8 130 118-270 135-297 (307)
114 smart00650 rADc Ribosomal RNA 99.4 5.7E-12 1.2E-16 107.5 11.9 106 105-214 2-113 (169)
115 KOG2361 Predicted methyltransf 99.4 5.7E-12 1.2E-16 114.4 12.0 187 82-271 33-248 (264)
116 TIGR00446 nop2p NOL1/NOP2/sun 99.4 7.6E-12 1.6E-16 114.6 13.0 104 111-214 66-199 (264)
117 COG2519 GCD14 tRNA(1-methylade 99.4 2.1E-11 4.5E-16 111.5 14.8 105 106-216 84-197 (256)
118 PRK01544 bifunctional N5-gluta 99.3 2.3E-11 5E-16 121.2 15.6 125 116-261 138-297 (506)
119 KOG2940 Predicted methyltransf 99.3 2.4E-12 5.1E-17 116.7 7.4 142 117-259 73-228 (325)
120 PF06325 PrmA: Ribosomal prote 99.3 1.2E-11 2.5E-16 115.9 12.2 131 114-269 159-294 (295)
121 PRK04457 spermidine synthase; 99.3 2.8E-11 6.1E-16 111.1 14.5 101 114-214 64-177 (262)
122 PF03291 Pox_MCEL: mRNA cappin 99.3 1.7E-12 3.7E-17 123.2 6.1 157 104-261 44-270 (331)
123 PRK01581 speE spermidine synth 99.3 3E-11 6.6E-16 116.0 14.6 129 115-258 149-297 (374)
124 COG4123 Predicted O-methyltran 99.3 2.9E-11 6.2E-16 110.6 13.4 107 112-218 40-174 (248)
125 PRK00811 spermidine synthase; 99.3 1.3E-11 2.8E-16 114.4 11.2 99 115-213 75-190 (283)
126 KOG1271 Methyltransferases [Ge 99.3 3.2E-11 6.9E-16 106.0 12.7 137 104-260 54-207 (227)
127 PRK03612 spermidine synthase; 99.3 3.4E-11 7.4E-16 120.3 14.1 130 115-259 296-445 (521)
128 PF05148 Methyltransf_8: Hypot 99.3 5.2E-11 1.1E-15 106.4 13.4 139 104-272 59-200 (219)
129 PF08704 GCD14: tRNA methyltra 99.3 5.1E-11 1.1E-15 109.0 12.8 129 106-258 30-171 (247)
130 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.8E-10 3.9E-15 112.8 16.1 107 103-214 284-400 (443)
131 KOG3045 Predicted RNA methylas 99.2 6.6E-11 1.4E-15 108.7 12.0 135 105-271 168-305 (325)
132 PHA03412 putative methyltransf 99.2 1.1E-10 2.3E-15 106.4 11.2 95 116-212 49-160 (241)
133 KOG1975 mRNA cap methyltransfe 99.2 5.6E-11 1.2E-15 111.9 9.5 158 104-262 105-321 (389)
134 TIGR00417 speE spermidine synt 99.2 1.4E-10 3E-15 106.5 11.1 99 115-213 71-185 (270)
135 PRK13256 thiopurine S-methyltr 99.2 2.6E-10 5.7E-15 103.1 12.5 104 109-213 36-162 (226)
136 PRK00274 ksgA 16S ribosomal RN 99.2 1.2E-10 2.6E-15 107.1 9.1 83 102-185 28-113 (272)
137 COG2890 HemK Methylase of poly 99.2 1.9E-09 4.1E-14 100.1 16.9 118 119-258 113-264 (280)
138 PLN02672 methionine S-methyltr 99.1 7.4E-10 1.6E-14 118.4 15.3 99 117-215 119-279 (1082)
139 COG2521 Predicted archaeal met 99.1 1.8E-10 3.8E-15 104.7 8.6 140 109-262 127-281 (287)
140 PRK11783 rlmL 23S rRNA m(2)G24 99.1 3.6E-10 7.7E-15 116.7 11.4 99 116-214 538-656 (702)
141 PF05724 TPMT: Thiopurine S-me 99.1 2.6E-10 5.7E-15 102.3 9.0 144 104-258 25-190 (218)
142 PLN02366 spermidine synthase 99.1 5.1E-10 1.1E-14 105.4 10.9 100 114-213 89-205 (308)
143 PF00891 Methyltransf_2: O-met 99.1 4.5E-10 9.8E-15 100.5 10.1 104 106-214 90-199 (241)
144 PRK14896 ksgA 16S ribosomal RN 99.1 5.1E-10 1.1E-14 102.2 10.3 86 100-188 13-102 (258)
145 PLN02781 Probable caffeoyl-CoA 99.1 4.6E-10 1E-14 101.4 9.2 101 113-216 65-180 (234)
146 TIGR00755 ksgA dimethyladenosi 99.1 1.2E-09 2.6E-14 99.2 11.1 105 100-212 13-124 (253)
147 TIGR00479 rumA 23S rRNA (uraci 99.0 5.5E-09 1.2E-13 101.7 15.4 106 105-214 281-396 (431)
148 PF02390 Methyltransf_4: Putat 99.0 7.4E-10 1.6E-14 97.7 8.4 97 119-215 20-134 (195)
149 PRK15128 23S rRNA m(5)C1962 me 99.0 6.7E-09 1.5E-13 100.9 15.8 99 115-213 219-338 (396)
150 COG2263 Predicted RNA methylas 99.0 7.9E-09 1.7E-13 91.2 13.0 115 113-254 42-164 (198)
151 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.3E-09 5.1E-14 95.0 9.5 110 106-216 42-161 (199)
152 COG3963 Phospholipid N-methylt 99.0 3.6E-09 7.8E-14 91.9 10.3 108 106-213 38-155 (194)
153 COG0500 SmtA SAM-dependent met 99.0 6.8E-09 1.5E-13 78.0 10.7 94 120-215 52-156 (257)
154 PTZ00338 dimethyladenosine tra 99.0 2.2E-09 4.7E-14 100.5 9.7 83 100-185 20-109 (294)
155 PRK10611 chemotaxis methyltran 99.0 2.7E-09 5.8E-14 99.7 9.5 99 118-216 117-264 (287)
156 TIGR00478 tly hemolysin TlyA f 99.0 5.8E-09 1.3E-13 94.5 11.0 144 104-258 62-217 (228)
157 PF06080 DUF938: Protein of un 98.9 2.2E-08 4.7E-13 89.4 14.1 163 104-269 13-204 (204)
158 PRK03522 rumB 23S rRNA methylu 98.9 5E-09 1.1E-13 98.2 10.5 99 112-214 169-274 (315)
159 PF03141 Methyltransf_29: Puta 98.9 3.2E-09 7E-14 104.9 7.5 137 119-271 120-262 (506)
160 PF05219 DREV: DREV methyltran 98.9 1.1E-08 2.4E-13 94.1 10.2 139 116-260 94-242 (265)
161 PF01170 UPF0020: Putative RNA 98.9 1.2E-08 2.5E-13 88.8 9.4 110 103-213 15-149 (179)
162 COG2813 RsmC 16S RNA G1207 met 98.9 1.8E-07 3.9E-12 87.8 17.5 123 88-213 129-265 (300)
163 PRK11727 23S rRNA mA1618 methy 98.8 1.1E-07 2.3E-12 90.2 16.1 160 99-258 92-292 (321)
164 COG1041 Predicted DNA modifica 98.8 2.6E-08 5.7E-13 94.9 11.4 116 99-215 180-311 (347)
165 PF05891 Methyltransf_PK: AdoM 98.8 2.3E-08 4.9E-13 90.0 10.3 156 100-262 33-205 (218)
166 PF07942 N2227: N2227-like pro 98.8 3.3E-08 7.1E-13 91.7 10.9 134 117-258 57-242 (270)
167 PLN02823 spermine synthase 98.8 3.7E-08 7.9E-13 93.9 11.0 98 116-213 103-219 (336)
168 PF01739 CheR: CheR methyltran 98.8 1.9E-08 4.1E-13 89.1 8.2 101 116-216 31-177 (196)
169 PLN02476 O-methyltransferase 98.8 4.8E-08 1E-12 90.9 10.6 111 100-216 105-230 (278)
170 COG0220 Predicted S-adenosylme 98.8 4E-08 8.6E-13 89.0 9.4 98 118-215 50-165 (227)
171 TIGR02085 meth_trns_rumB 23S r 98.7 2.6E-07 5.6E-12 88.9 14.6 99 112-214 229-334 (374)
172 COG4122 Predicted O-methyltran 98.7 6.9E-08 1.5E-12 87.1 9.6 97 113-212 56-164 (219)
173 KOG1661 Protein-L-isoaspartate 98.7 5.8E-08 1.3E-12 87.0 8.3 101 107-213 71-192 (237)
174 PF11968 DUF3321: Putative met 98.7 3E-07 6.4E-12 82.7 12.5 131 118-272 53-195 (219)
175 PF01269 Fibrillarin: Fibrilla 98.7 4.3E-07 9.3E-12 82.1 12.6 167 84-270 47-228 (229)
176 PF01596 Methyltransf_3: O-met 98.6 1.7E-07 3.7E-12 83.5 9.9 114 98-217 30-158 (205)
177 TIGR03439 methyl_EasF probable 98.6 2E-06 4.3E-11 81.6 17.5 133 79-213 35-196 (319)
178 COG0030 KsgA Dimethyladenosine 98.6 1.3E-07 2.8E-12 87.2 9.3 84 100-184 14-102 (259)
179 PRK11933 yebU rRNA (cytosine-C 98.6 2.9E-07 6.2E-12 91.4 12.3 103 113-215 110-243 (470)
180 KOG1269 SAM-dependent methyltr 98.6 8.7E-08 1.9E-12 92.3 8.3 143 71-213 58-214 (364)
181 TIGR00095 RNA methyltransferas 98.6 1.4E-07 3.1E-12 82.7 8.9 98 116-216 49-161 (189)
182 PRK01544 bifunctional N5-gluta 98.6 2.2E-07 4.7E-12 93.0 10.3 100 116-215 347-463 (506)
183 PF12147 Methyltransf_20: Puta 98.6 3.4E-06 7.4E-11 79.1 17.2 151 116-267 135-307 (311)
184 KOG1331 Predicted methyltransf 98.6 2.7E-08 6E-13 92.4 3.1 95 113-212 42-141 (293)
185 KOG2899 Predicted methyltransf 98.5 1.2E-06 2.7E-11 80.2 12.4 136 115-252 57-251 (288)
186 PLN02589 caffeoyl-CoA O-methyl 98.5 6.7E-07 1.4E-11 82.0 10.7 110 99-214 65-190 (247)
187 PRK04148 hypothetical protein; 98.5 1.3E-06 2.9E-11 73.2 11.5 99 112-218 12-113 (134)
188 COG1889 NOP1 Fibrillarin-like 98.5 2.8E-06 6.1E-11 76.0 14.1 173 75-270 41-230 (231)
189 KOG1499 Protein arginine N-met 98.5 1.7E-07 3.6E-12 89.3 6.3 98 114-212 58-165 (346)
190 COG1352 CheR Methylase of chem 98.5 1.4E-06 3.1E-11 80.8 11.8 100 117-216 97-243 (268)
191 PRK04338 N(2),N(2)-dimethylgua 98.5 7.4E-07 1.6E-11 86.3 10.3 93 117-213 58-157 (382)
192 PF01564 Spermine_synth: Sperm 98.4 5.3E-07 1.1E-11 82.3 7.5 99 115-213 75-190 (246)
193 COG0421 SpeE Spermidine syntha 98.4 2.2E-06 4.8E-11 80.0 11.6 96 118-213 78-189 (282)
194 KOG2904 Predicted methyltransf 98.4 2.1E-06 4.4E-11 80.0 11.0 114 100-213 129-284 (328)
195 PRK05031 tRNA (uracil-5-)-meth 98.4 5.3E-06 1.1E-10 79.6 13.9 102 106-214 197-320 (362)
196 KOG3178 Hydroxyindole-O-methyl 98.4 5.2E-06 1.1E-10 79.2 13.6 142 118-266 179-338 (342)
197 PF02527 GidB: rRNA small subu 98.4 4.3E-06 9.3E-11 73.5 11.8 126 82-213 10-147 (184)
198 PF10294 Methyltransf_16: Puta 98.4 1E-06 2.2E-11 76.1 7.5 103 113-216 42-158 (173)
199 PRK00050 16S rRNA m(4)C1402 me 98.4 1.1E-06 2.5E-11 82.5 8.3 95 104-198 7-113 (296)
200 TIGR02143 trmA_only tRNA (urac 98.4 3.2E-06 7E-11 80.9 11.5 103 105-214 187-311 (353)
201 KOG0820 Ribosomal RNA adenine 98.4 1.6E-06 3.5E-11 80.5 9.0 78 104-184 46-130 (315)
202 KOG2915 tRNA(1-methyladenosine 98.4 1E-05 2.2E-10 75.3 13.8 104 105-213 94-209 (314)
203 COG1092 Predicted SAM-dependen 98.3 8.4E-06 1.8E-10 79.4 13.4 99 117-215 218-337 (393)
204 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.5E-06 3.3E-11 80.1 7.7 148 114-269 54-256 (256)
205 PF01728 FtsJ: FtsJ-like methy 98.3 3.6E-07 7.7E-12 78.4 1.9 107 104-216 8-141 (181)
206 PF10672 Methyltrans_SAM: S-ad 98.2 2.8E-06 6E-11 79.5 7.6 111 100-213 110-237 (286)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.2 8.9E-06 1.9E-10 84.4 12.0 112 104-215 177-348 (702)
208 PF02384 N6_Mtase: N-6 DNA Met 98.2 5.4E-06 1.2E-10 76.9 9.0 112 104-215 34-184 (311)
209 PF05185 PRMT5: PRMT5 arginine 98.2 6.7E-06 1.4E-10 81.3 9.7 93 117-211 187-294 (448)
210 PF08123 DOT1: Histone methyla 98.2 3.6E-06 7.8E-11 75.1 7.1 117 97-214 23-158 (205)
211 PF04816 DUF633: Family of unk 98.2 2E-05 4.2E-10 70.5 11.8 127 120-271 1-139 (205)
212 KOG3420 Predicted RNA methylas 98.2 3.1E-06 6.7E-11 72.5 6.1 88 116-204 48-143 (185)
213 PRK00536 speE spermidine synth 98.2 1.4E-05 3.1E-10 74.0 10.9 88 115-212 71-169 (262)
214 KOG3191 Predicted N6-DNA-methy 98.2 9.1E-05 2E-09 65.5 15.2 72 117-189 44-124 (209)
215 PF00398 RrnaAD: Ribosomal RNA 98.2 8.3E-06 1.8E-10 74.7 8.6 103 100-206 14-123 (262)
216 COG0357 GidB Predicted S-adeno 98.1 6.8E-05 1.5E-09 67.6 13.5 173 77-271 24-214 (215)
217 PF03059 NAS: Nicotianamine sy 98.1 3.4E-05 7.3E-10 72.0 11.9 96 118-213 122-229 (276)
218 COG4798 Predicted methyltransf 98.1 1.4E-05 3.1E-10 71.3 8.9 140 107-255 39-202 (238)
219 PF03602 Cons_hypoth95: Conser 98.1 2.7E-06 5.9E-11 74.5 4.3 101 115-216 41-155 (183)
220 COG0144 Sun tRNA and rRNA cyto 98.0 0.00022 4.8E-09 68.5 15.9 105 111-215 151-289 (355)
221 PF09243 Rsm22: Mitochondrial 98.0 0.00016 3.4E-09 67.1 13.9 97 118-218 35-143 (274)
222 COG0116 Predicted N6-adenine-s 98.0 0.00016 3.4E-09 70.2 13.6 129 84-215 162-345 (381)
223 COG2265 TrmA SAM-dependent met 98.0 8.2E-05 1.8E-09 73.4 11.8 114 104-223 281-403 (432)
224 PF02475 Met_10: Met-10+ like- 97.9 2.8E-05 6E-10 69.3 7.6 99 106-211 93-199 (200)
225 COG0742 N6-adenine-specific me 97.9 0.00014 3E-09 64.4 11.1 110 105-215 30-155 (187)
226 KOG2352 Predicted spermine/spe 97.9 6.5E-05 1.4E-09 74.5 9.6 110 103-212 29-159 (482)
227 KOG1500 Protein arginine N-met 97.9 7E-05 1.5E-09 71.8 9.3 95 116-213 177-281 (517)
228 PRK11760 putative 23S rRNA C24 97.9 0.00011 2.4E-09 70.5 10.6 87 114-207 209-296 (357)
229 KOG2798 Putative trehalase [Ca 97.9 6.1E-05 1.3E-09 71.4 8.6 168 83-259 114-338 (369)
230 PF05958 tRNA_U5-meth_tr: tRNA 97.8 4.9E-05 1.1E-09 72.7 7.7 107 100-213 181-309 (352)
231 KOG3987 Uncharacterized conser 97.8 1.1E-05 2.3E-10 72.8 2.0 104 105-213 98-206 (288)
232 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00018 4E-09 69.7 10.3 92 118-213 46-146 (374)
233 TIGR02987 met_A_Alw26 type II 97.7 0.00013 2.9E-09 73.0 9.5 71 116-186 31-123 (524)
234 cd08283 FDH_like_1 Glutathione 97.7 0.00028 6.2E-09 67.3 11.0 103 110-213 178-305 (386)
235 COG0293 FtsJ 23S rRNA methylas 97.6 0.00064 1.4E-08 60.9 10.8 110 104-219 32-164 (205)
236 KOG1663 O-methyltransferase [S 97.6 0.00053 1.1E-08 62.5 10.3 109 100-214 60-183 (237)
237 KOG1709 Guanidinoacetate methy 97.6 0.00046 1E-08 62.7 9.6 113 103-216 85-208 (271)
238 COG1189 Predicted rRNA methyla 97.5 0.0013 2.8E-08 60.3 11.6 162 104-270 66-243 (245)
239 PF04672 Methyltransf_19: S-ad 97.5 0.0008 1.7E-08 62.6 10.0 153 100-255 51-233 (267)
240 COG1064 AdhP Zn-dependent alco 97.5 0.00056 1.2E-08 65.6 9.2 99 107-213 157-258 (339)
241 PRK09880 L-idonate 5-dehydroge 97.5 0.001 2.3E-08 62.2 10.5 98 109-213 162-265 (343)
242 COG1063 Tdh Threonine dehydrog 97.4 0.0012 2.6E-08 62.9 10.6 94 114-213 166-268 (350)
243 PF09445 Methyltransf_15: RNA 97.4 0.00015 3.2E-09 62.8 3.8 65 119-184 2-76 (163)
244 COG4262 Predicted spermidine s 97.4 0.00094 2E-08 64.8 9.6 99 115-213 288-406 (508)
245 PF13679 Methyltransf_32: Meth 97.4 0.0022 4.8E-08 53.3 10.6 94 113-213 22-130 (141)
246 COG2384 Predicted SAM-dependen 97.3 0.0031 6.6E-08 57.2 11.7 130 115-268 15-155 (226)
247 PRK09424 pntA NAD(P) transhydr 97.3 0.0023 5E-08 64.5 11.6 99 113-213 161-284 (509)
248 COG4627 Uncharacterized protei 97.2 3.9E-05 8.5E-10 66.3 -2.0 94 159-253 29-133 (185)
249 COG2520 Predicted methyltransf 97.2 0.0025 5.5E-08 61.2 10.0 95 115-213 187-288 (341)
250 cd08237 ribitol-5-phosphate_DH 97.2 0.0031 6.7E-08 59.2 10.2 92 112-212 159-254 (341)
251 PLN02668 indole-3-acetate carb 97.1 0.0043 9.4E-08 60.5 10.8 92 166-258 151-309 (386)
252 KOG1596 Fibrillarin and relate 97.1 0.00082 1.8E-08 62.0 5.3 122 82-213 128-260 (317)
253 KOG0024 Sorbitol dehydrogenase 97.0 0.0062 1.3E-07 58.2 11.0 100 107-213 160-272 (354)
254 cd08254 hydroxyacyl_CoA_DH 6-h 97.0 0.0078 1.7E-07 54.9 11.4 96 110-213 159-262 (338)
255 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0019 4.1E-08 60.2 7.3 104 111-214 80-219 (283)
256 TIGR01444 fkbM_fam methyltrans 97.0 0.0019 4.2E-08 52.6 6.4 50 119-168 1-57 (143)
257 TIGR00006 S-adenosyl-methyltra 97.0 0.0035 7.5E-08 59.4 8.8 95 104-198 8-115 (305)
258 PF06962 rRNA_methylase: Putat 96.9 0.0069 1.5E-07 51.3 9.2 115 140-269 1-140 (140)
259 KOG2187 tRNA uracil-5-methyltr 96.9 0.00081 1.7E-08 67.3 3.9 62 109-171 376-443 (534)
260 PF13578 Methyltransf_24: Meth 96.8 0.00027 5.9E-09 55.2 -0.0 92 121-213 1-104 (106)
261 cd05188 MDR Medium chain reduc 96.7 0.039 8.5E-07 48.1 12.9 94 113-213 131-231 (271)
262 TIGR03451 mycoS_dep_FDH mycoth 96.7 0.019 4.1E-07 54.0 11.6 97 109-213 169-275 (358)
263 cd08281 liver_ADH_like1 Zinc-d 96.7 0.013 2.9E-07 55.4 10.4 98 109-213 184-289 (371)
264 PF03141 Methyltransf_29: Puta 96.7 0.0066 1.4E-07 60.8 8.3 130 118-269 367-506 (506)
265 TIGR02822 adh_fam_2 zinc-bindi 96.7 0.023 4.9E-07 53.2 11.5 94 109-213 158-253 (329)
266 TIGR00561 pntA NAD(P) transhyd 96.6 0.0093 2E-07 60.2 9.0 96 115-212 162-282 (511)
267 COG3897 Predicted methyltransf 96.6 0.0092 2E-07 53.5 7.7 108 106-216 69-181 (218)
268 PRK13699 putative methylase; P 96.6 0.0098 2.1E-07 53.7 8.1 52 162-213 3-71 (227)
269 cd08230 glucose_DH Glucose deh 96.6 0.019 4E-07 53.9 10.2 91 113-212 169-267 (355)
270 cd08239 THR_DH_like L-threonin 96.5 0.029 6.4E-07 51.9 11.1 98 109-213 156-261 (339)
271 TIGR03366 HpnZ_proposed putati 96.5 0.023 4.9E-07 51.7 10.1 98 108-213 112-217 (280)
272 TIGR01202 bchC 2-desacetyl-2-h 96.4 0.017 3.7E-07 53.4 8.8 84 115-212 143-229 (308)
273 COG4076 Predicted RNA methylas 96.4 0.0066 1.4E-07 54.4 5.6 92 118-212 34-133 (252)
274 KOG4589 Cell division protein 96.3 0.13 2.8E-06 46.2 13.4 98 114-217 67-187 (232)
275 PLN03154 putative allyl alcoho 96.3 0.05 1.1E-06 51.3 11.6 96 110-212 152-256 (348)
276 cd08245 CAD Cinnamyl alcohol d 96.3 0.048 1E-06 50.0 11.3 97 110-213 156-255 (330)
277 cd08242 MDR_like Medium chain 96.3 0.062 1.4E-06 49.1 11.8 96 108-213 147-244 (319)
278 PLN02740 Alcohol dehydrogenase 96.3 0.046 9.9E-07 52.1 11.3 94 110-212 192-298 (381)
279 cd08232 idonate-5-DH L-idonate 96.3 0.049 1.1E-06 50.2 11.0 95 112-213 161-261 (339)
280 PRK01747 mnmC bifunctional tRN 96.3 0.03 6.6E-07 57.6 10.4 95 118-212 59-204 (662)
281 cd08238 sorbose_phosphate_red 96.2 0.072 1.6E-06 51.4 12.4 95 111-212 170-286 (410)
282 cd08255 2-desacetyl-2-hydroxye 96.2 0.068 1.5E-06 47.7 11.2 97 109-213 90-189 (277)
283 PRK10309 galactitol-1-phosphat 96.1 0.056 1.2E-06 50.4 10.8 98 109-213 153-259 (347)
284 PLN02586 probable cinnamyl alc 96.1 0.037 8.1E-07 52.4 9.7 95 113-213 180-277 (360)
285 PRK10742 putative methyltransf 96.1 0.02 4.4E-07 52.8 7.3 78 106-184 76-171 (250)
286 TIGR02819 fdhA_non_GSH formald 96.0 0.081 1.8E-06 51.1 11.5 102 109-212 178-297 (393)
287 cd00401 AdoHcyase S-adenosyl-L 96.0 0.048 1E-06 53.7 10.0 96 105-213 189-288 (413)
288 cd08285 NADP_ADH NADP(H)-depen 95.9 0.094 2E-06 48.8 11.3 96 109-212 159-264 (351)
289 cd08293 PTGR2 Prostaglandin re 95.9 0.099 2.1E-06 48.3 11.3 96 110-212 146-252 (345)
290 cd05285 sorbitol_DH Sorbitol d 95.9 0.12 2.5E-06 48.1 11.8 97 109-213 155-264 (343)
291 cd08234 threonine_DH_like L-th 95.9 0.077 1.7E-06 48.6 10.5 97 110-213 153-256 (334)
292 KOG2730 Methylase [General fun 95.9 0.0094 2E-07 54.4 4.2 67 117-184 95-172 (263)
293 TIGR03201 dearomat_had 6-hydro 95.9 0.095 2.1E-06 49.1 11.1 98 109-213 159-271 (349)
294 PF10354 DUF2431: Domain of un 95.8 0.14 2.9E-06 44.3 10.8 117 122-258 3-152 (166)
295 cd08294 leukotriene_B4_DH_like 95.7 0.15 3.2E-06 46.6 11.5 95 110-212 137-239 (329)
296 PLN02827 Alcohol dehydrogenase 95.7 0.1 2.3E-06 49.8 10.8 96 110-212 187-293 (378)
297 PRK11524 putative methyltransf 95.6 0.016 3.4E-07 53.8 4.7 55 160-214 8-80 (284)
298 cd08295 double_bond_reductase_ 95.6 0.18 3.8E-06 46.8 11.6 96 110-212 145-249 (338)
299 TIGR02818 adh_III_F_hyde S-(hy 95.6 0.14 3E-06 48.6 11.0 95 110-213 179-286 (368)
300 TIGR02825 B4_12hDH leukotriene 95.5 0.16 3.5E-06 46.8 10.8 97 109-213 131-236 (325)
301 cd05278 FDH_like Formaldehyde 95.4 0.12 2.7E-06 47.5 9.9 96 110-213 161-266 (347)
302 PLN02514 cinnamyl-alcohol dehy 95.4 0.15 3.4E-06 48.0 10.8 94 114-213 178-274 (357)
303 PF01861 DUF43: Protein of unk 95.4 1.1 2.3E-05 41.4 15.7 95 113-212 41-147 (243)
304 cd08298 CAD2 Cinnamyl alcohol 95.4 0.23 5E-06 45.4 11.6 93 110-213 161-255 (329)
305 cd08261 Zn_ADH7 Alcohol dehydr 95.3 0.19 4.1E-06 46.3 10.8 97 109-213 152-257 (337)
306 cd08300 alcohol_DH_class_III c 95.3 0.23 4.9E-06 47.0 11.5 96 109-213 179-287 (368)
307 cd00315 Cyt_C5_DNA_methylase C 95.3 0.044 9.6E-07 50.7 6.5 65 119-184 2-69 (275)
308 cd08231 MDR_TM0436_like Hypoth 95.3 0.27 5.9E-06 45.9 11.8 92 114-213 175-279 (361)
309 cd08277 liver_alcohol_DH_like 95.3 0.24 5.3E-06 46.7 11.5 98 109-213 177-285 (365)
310 cd08301 alcohol_DH_plants Plan 95.3 0.21 4.5E-06 47.1 11.1 96 109-213 180-288 (369)
311 PRK10083 putative oxidoreducta 95.2 0.19 4.1E-06 46.3 10.4 99 108-213 152-258 (339)
312 cd05283 CAD1 Cinnamyl alcohol 95.2 0.19 4.2E-06 46.5 10.5 98 109-213 162-262 (337)
313 cd08233 butanediol_DH_like (2R 95.2 0.28 6.1E-06 45.6 11.5 97 109-213 165-271 (351)
314 KOG2198 tRNA cytosine-5-methyl 95.1 0.2 4.4E-06 48.6 10.4 105 111-215 150-297 (375)
315 COG0286 HsdM Type I restrictio 95.0 0.29 6.3E-06 49.2 11.8 113 101-213 171-325 (489)
316 cd08296 CAD_like Cinnamyl alco 95.0 0.29 6.2E-06 45.3 11.1 97 110-213 157-258 (333)
317 PLN02178 cinnamyl-alcohol dehy 94.9 0.13 2.8E-06 49.3 8.6 92 115-213 177-272 (375)
318 PF00107 ADH_zinc_N: Zinc-bind 94.9 0.13 2.9E-06 40.8 7.3 116 125-247 1-126 (130)
319 cd08236 sugar_DH NAD(P)-depend 94.8 0.41 8.9E-06 44.1 11.5 96 110-213 153-257 (343)
320 PF04989 CmcI: Cephalosporin h 94.8 0.092 2E-06 47.2 6.8 114 99-215 18-148 (206)
321 TIGR00518 alaDH alanine dehydr 94.7 0.072 1.6E-06 51.5 6.4 97 116-212 166-265 (370)
322 cd08278 benzyl_alcohol_DH Benz 94.6 0.31 6.7E-06 46.0 10.4 97 110-213 180-284 (365)
323 cd05279 Zn_ADH1 Liver alcohol 94.4 0.38 8.2E-06 45.4 10.3 96 109-213 176-284 (365)
324 cd08263 Zn_ADH10 Alcohol dehyd 94.4 0.49 1.1E-05 44.5 11.0 96 111-213 182-286 (367)
325 PF03269 DUF268: Caenorhabditi 94.1 0.033 7.1E-07 48.6 2.2 99 117-219 2-116 (177)
326 cd08279 Zn_ADH_class_III Class 94.0 0.48 1E-05 44.5 10.2 97 109-213 175-281 (363)
327 cd08265 Zn_ADH3 Alcohol dehydr 94.0 0.48 1E-05 45.1 10.3 95 112-213 199-306 (384)
328 TIGR00936 ahcY adenosylhomocys 94.0 1.8 4E-05 42.7 14.4 96 105-213 182-281 (406)
329 PRK09422 ethanol-active dehydr 94.0 0.53 1.1E-05 43.2 10.2 98 109-213 155-260 (338)
330 KOG3201 Uncharacterized conser 93.9 0.051 1.1E-06 47.7 3.0 116 107-224 20-150 (201)
331 PF01795 Methyltransf_5: MraW 93.9 0.13 2.9E-06 48.9 6.1 80 105-184 9-100 (310)
332 PRK03562 glutathione-regulated 93.8 1.3 2.9E-05 45.6 13.8 92 117-213 400-497 (621)
333 cd08286 FDH_like_ADH2 formalde 93.7 0.79 1.7E-05 42.4 10.8 97 109-213 159-265 (345)
334 cd05213 NAD_bind_Glutamyl_tRNA 93.6 0.6 1.3E-05 43.9 10.0 92 115-212 176-270 (311)
335 PRK05476 S-adenosyl-L-homocyst 93.6 1 2.2E-05 44.6 12.0 88 113-213 207-298 (425)
336 COG5459 Predicted rRNA methyla 93.5 0.31 6.8E-06 47.5 7.9 104 113-218 111-229 (484)
337 cd08260 Zn_ADH6 Alcohol dehydr 93.5 0.77 1.7E-05 42.4 10.4 97 110-213 159-263 (345)
338 KOG1099 SAM-dependent methyltr 93.4 0.16 3.6E-06 46.8 5.6 90 118-213 43-162 (294)
339 PLN02702 L-idonate 5-dehydroge 93.4 1.4 3E-05 41.4 12.1 98 110-213 175-284 (364)
340 KOG1122 tRNA and rRNA cytosine 93.4 0.29 6.3E-06 48.5 7.6 104 110-214 235-371 (460)
341 PRK03659 glutathione-regulated 93.3 1.4 3.1E-05 45.2 13.0 103 118-227 401-510 (601)
342 cd08274 MDR9 Medium chain dehy 93.3 1.2 2.6E-05 41.0 11.4 94 109-212 170-271 (350)
343 PTZ00354 alcohol dehydrogenase 93.3 0.8 1.7E-05 41.5 10.1 94 112-213 136-239 (334)
344 PRK05786 fabG 3-ketoacyl-(acyl 93.3 0.65 1.4E-05 40.3 9.2 96 116-213 4-134 (238)
345 PRK08267 short chain dehydroge 93.3 0.7 1.5E-05 40.9 9.5 69 119-188 3-88 (260)
346 PF05430 Methyltransf_30: S-ad 93.3 0.13 2.7E-06 42.6 4.3 85 161-268 33-122 (124)
347 cd08240 6_hydroxyhexanoate_dh_ 93.1 1.1 2.5E-05 41.4 11.0 93 114-213 173-273 (350)
348 cd08291 ETR_like_1 2-enoyl thi 93.1 0.94 2E-05 41.6 10.3 90 116-213 142-241 (324)
349 cd05288 PGDH Prostaglandin deh 93.1 1.1 2.4E-05 40.8 10.6 93 111-212 140-242 (329)
350 cd08235 iditol_2_DH_like L-idi 93.0 1.3 2.8E-05 40.7 11.2 97 109-213 158-264 (343)
351 cd05281 TDH Threonine dehydrog 92.9 0.98 2.1E-05 41.8 10.2 93 113-213 160-261 (341)
352 cd05289 MDR_like_2 alcohol deh 92.9 1.7 3.7E-05 38.4 11.4 92 113-213 141-237 (309)
353 cd08243 quinone_oxidoreductase 92.7 1.7 3.7E-05 38.9 11.2 92 112-213 138-237 (320)
354 PF11899 DUF3419: Protein of u 92.6 0.25 5.4E-06 48.2 6.0 48 109-157 28-76 (380)
355 TIGR00692 tdh L-threonine 3-de 92.6 1.4 3E-05 40.8 10.8 93 113-213 158-260 (340)
356 cd05286 QOR2 Quinone oxidoredu 92.5 1.3 2.8E-05 39.3 10.0 93 111-212 131-233 (320)
357 PF05971 Methyltransf_10: Prot 92.5 0.53 1.2E-05 44.6 7.8 157 100-258 84-282 (299)
358 PRK12829 short chain dehydroge 92.5 0.47 1E-05 41.8 7.1 73 113-187 7-96 (264)
359 PRK07502 cyclohexadienyl dehyd 92.4 1.5 3.2E-05 40.8 10.7 88 118-212 7-98 (307)
360 cd08266 Zn_ADH_like1 Alcohol d 92.4 1.6 3.4E-05 39.3 10.6 97 109-213 159-264 (342)
361 cd08282 PFDH_like Pseudomonas 92.4 0.91 2E-05 43.0 9.4 100 110-213 170-284 (375)
362 cd08241 QOR1 Quinone oxidoredu 92.3 1.6 3.4E-05 38.8 10.4 95 111-213 134-237 (323)
363 PRK09496 trkA potassium transp 92.3 3.7 8E-05 39.8 13.6 90 117-212 231-328 (453)
364 PLN02494 adenosylhomocysteinas 92.2 0.73 1.6E-05 46.4 8.8 98 104-213 240-340 (477)
365 COG1062 AdhC Zn-dependent alco 92.2 1.5 3.3E-05 42.5 10.5 101 105-212 174-283 (366)
366 KOG1562 Spermidine synthase [A 92.2 0.18 4E-06 47.9 4.3 101 113-213 118-235 (337)
367 COG0275 Predicted S-adenosylme 92.1 0.48 1E-05 45.1 7.0 81 104-184 11-103 (314)
368 PRK06196 oxidoreductase; Provi 92.1 0.84 1.8E-05 42.1 8.7 70 116-187 25-109 (315)
369 cd08292 ETR_like_2 2-enoyl thi 92.1 1.4 3.1E-05 39.9 10.0 97 109-213 132-237 (324)
370 cd05284 arabinose_DH_like D-ar 92.1 1.4 3.1E-05 40.4 10.1 93 113-213 164-265 (340)
371 cd08262 Zn_ADH8 Alcohol dehydr 92.1 1.8 3.9E-05 39.8 10.8 97 109-213 154-263 (341)
372 PRK05708 2-dehydropantoate 2-r 91.7 1.5 3.2E-05 41.1 9.8 91 118-213 3-103 (305)
373 PRK10669 putative cation:proto 91.7 2.4 5.2E-05 42.9 12.0 90 118-213 418-514 (558)
374 cd08270 MDR4 Medium chain dehy 91.7 2.9 6.3E-05 37.5 11.5 91 112-213 128-221 (305)
375 KOG2918 Carboxymethyl transfer 91.7 1 2.3E-05 43.1 8.7 40 115-154 86-129 (335)
376 cd08299 alcohol_DH_class_I_II_ 91.6 2.1 4.6E-05 40.7 11.0 96 109-213 183-291 (373)
377 COG4301 Uncharacterized conser 91.6 4.6 0.0001 37.9 12.6 97 116-213 78-192 (321)
378 PF02254 TrkA_N: TrkA-N domain 91.6 1.7 3.6E-05 34.0 8.6 85 124-213 4-95 (116)
379 cd08287 FDH_like_ADH3 formalde 91.6 2.3 4.9E-05 39.2 10.8 96 110-213 162-267 (345)
380 PF06859 Bin3: Bicoid-interact 91.5 0.055 1.2E-06 44.1 0.0 77 177-258 1-92 (110)
381 PRK12742 oxidoreductase; Provi 91.5 1.9 4E-05 37.4 9.7 94 116-212 5-129 (237)
382 cd08244 MDR_enoyl_red Possible 91.4 2.7 5.8E-05 38.0 11.0 97 108-213 134-240 (324)
383 PRK08265 short chain dehydroge 91.4 1.5 3.3E-05 39.1 9.2 69 117-187 6-90 (261)
384 PRK07417 arogenate dehydrogena 91.3 1.4 3.1E-05 40.5 9.1 83 119-210 2-87 (279)
385 PRK06101 short chain dehydroge 91.2 3.2 6.9E-05 36.4 11.0 66 119-186 3-80 (240)
386 PF02558 ApbA: Ketopantoate re 91.1 1.8 4E-05 35.3 8.8 104 120-228 1-114 (151)
387 PRK10754 quinone oxidoreductas 91.1 2.4 5.1E-05 38.7 10.4 96 110-213 134-238 (327)
388 cd08284 FDH_like_2 Glutathione 91.1 3.3 7.1E-05 38.1 11.4 96 110-213 161-265 (344)
389 PRK08306 dipicolinate synthase 91.0 2 4.4E-05 40.2 10.0 98 104-212 138-239 (296)
390 PRK05396 tdh L-threonine 3-deh 91.0 2.2 4.8E-05 39.3 10.2 91 115-213 162-262 (341)
391 cd08256 Zn_ADH2 Alcohol dehydr 91.0 2.5 5.5E-05 39.2 10.6 97 110-213 168-273 (350)
392 PRK06035 3-hydroxyacyl-CoA deh 91.0 0.77 1.7E-05 42.3 7.1 137 118-262 4-190 (291)
393 PLN02545 3-hydroxybutyryl-CoA 91.0 2.8 6E-05 38.7 10.8 88 118-211 5-116 (295)
394 COG0270 Dcm Site-specific DNA 90.9 2.1 4.5E-05 40.6 10.1 121 119-253 5-142 (328)
395 PRK08219 short chain dehydroge 90.9 1.6 3.4E-05 37.4 8.6 67 118-187 4-81 (227)
396 PRK08324 short chain dehydroge 90.9 1.2 2.7E-05 46.2 9.1 97 116-213 421-556 (681)
397 PRK09260 3-hydroxybutyryl-CoA 90.8 0.34 7.3E-06 44.7 4.6 89 119-213 3-116 (288)
398 PRK06500 short chain dehydroge 90.8 2.3 4.9E-05 37.0 9.6 69 117-187 6-90 (249)
399 cd08269 Zn_ADH9 Alcohol dehydr 90.8 4.9 0.00011 36.1 12.0 97 109-213 122-228 (312)
400 PRK06522 2-dehydropantoate 2-r 90.8 1.8 3.9E-05 39.5 9.3 88 119-213 2-99 (304)
401 PRK06200 2,3-dihydroxy-2,3-dih 90.8 1.9 4.2E-05 38.2 9.3 71 116-187 5-90 (263)
402 cd08297 CAD3 Cinnamyl alcohol 90.8 3.6 7.8E-05 37.8 11.4 94 112-213 161-264 (341)
403 PF01488 Shikimate_DH: Shikima 90.8 0.45 9.7E-06 39.2 4.8 72 116-187 11-85 (135)
404 cd08267 MDR1 Medium chain dehy 90.6 4.2 9.1E-05 36.4 11.4 94 113-213 140-239 (319)
405 PRK12921 2-dehydropantoate 2-r 90.6 2.8 6E-05 38.3 10.4 89 119-212 2-100 (305)
406 PRK09072 short chain dehydroge 90.5 1.5 3.2E-05 39.0 8.3 70 117-187 5-90 (263)
407 PRK13771 putative alcohol dehy 90.4 1.5 3.2E-05 40.2 8.5 95 109-213 155-254 (334)
408 cd08268 MDR2 Medium chain dehy 90.4 3.8 8.2E-05 36.5 10.9 94 111-212 139-241 (328)
409 cd08289 MDR_yhfp_like Yhfp put 90.4 3.2 7E-05 37.7 10.5 88 116-213 146-242 (326)
410 cd08250 Mgc45594_like Mgc45594 90.3 4.5 9.8E-05 36.8 11.5 94 111-212 134-235 (329)
411 COG0686 Ald Alanine dehydrogen 90.2 0.92 2E-05 43.7 6.8 97 114-211 166-265 (371)
412 cd08246 crotonyl_coA_red croto 90.0 3.4 7.4E-05 39.2 10.8 93 112-213 189-314 (393)
413 TIGR02817 adh_fam_1 zinc-bindi 89.9 3.1 6.7E-05 38.0 10.1 95 110-213 137-246 (336)
414 PF11899 DUF3419: Protein of u 89.8 0.44 9.5E-06 46.6 4.5 60 154-213 270-333 (380)
415 PF03492 Methyltransf_7: SAM d 89.8 0.55 1.2E-05 44.9 5.1 93 164-256 94-251 (334)
416 cd05565 PTS_IIB_lactose PTS_II 89.7 1.3 2.7E-05 35.4 6.3 75 119-212 2-76 (99)
417 PF11312 DUF3115: Protein of u 89.6 0.32 6.9E-06 46.4 3.3 57 161-217 177-245 (315)
418 TIGR02824 quinone_pig3 putativ 89.6 4.4 9.6E-05 36.1 10.6 94 109-212 132-236 (325)
419 PF01555 N6_N4_Mtase: DNA meth 89.5 0.77 1.7E-05 39.4 5.4 51 104-156 180-231 (231)
420 TIGR00027 mthyl_TIGR00027 meth 89.4 9.7 0.00021 35.0 12.9 138 118-256 83-248 (260)
421 PRK12939 short chain dehydroge 89.4 1.7 3.7E-05 37.7 7.6 70 116-187 6-94 (250)
422 PRK07825 short chain dehydroge 89.4 3.3 7.1E-05 37.0 9.6 70 117-187 5-88 (273)
423 TIGR02823 oxido_YhdH putative 89.2 4.3 9.4E-05 36.8 10.4 95 111-213 139-240 (323)
424 COG0287 TyrA Prephenate dehydr 89.2 1.2 2.7E-05 41.6 6.9 87 118-210 4-94 (279)
425 cd05195 enoyl_red enoyl reduct 89.2 4.2 9.2E-05 35.2 10.0 96 110-212 102-207 (293)
426 cd08264 Zn_ADH_like2 Alcohol d 89.2 3.4 7.5E-05 37.6 9.8 90 109-213 155-252 (325)
427 PRK11064 wecC UDP-N-acetyl-D-m 89.0 3.1 6.7E-05 40.8 9.9 96 118-215 4-120 (415)
428 COG0604 Qor NADPH:quinone redu 89.0 3.2 6.9E-05 39.3 9.7 98 109-213 135-240 (326)
429 cd08276 MDR7 Medium chain dehy 89.0 5.8 0.00013 35.8 11.1 94 111-213 155-258 (336)
430 PF04445 SAM_MT: Putative SAM- 89.0 0.7 1.5E-05 42.4 4.9 78 106-184 63-158 (234)
431 cd05282 ETR_like 2-enoyl thioe 88.9 3.2 6.8E-05 37.5 9.3 92 112-212 134-235 (323)
432 cd05276 p53_inducible_oxidored 88.9 4 8.6E-05 36.1 9.8 94 111-213 134-237 (323)
433 COG1565 Uncharacterized conser 88.9 1.2 2.7E-05 43.3 6.8 64 97-160 58-131 (370)
434 PRK00045 hemA glutamyl-tRNA re 88.9 3.3 7.2E-05 40.6 10.0 94 115-212 180-277 (423)
435 PLN00203 glutamyl-tRNA reducta 88.9 1.7 3.6E-05 44.3 8.0 83 117-200 266-352 (519)
436 PRK15057 UDP-glucose 6-dehydro 88.8 3.6 7.7E-05 40.1 10.1 102 119-224 2-127 (388)
437 PRK07806 short chain dehydroge 88.8 2.8 6.1E-05 36.6 8.6 96 116-213 5-133 (248)
438 PRK13394 3-hydroxybutyrate deh 88.8 2.8 6.1E-05 36.7 8.6 70 117-187 7-94 (262)
439 PF02636 Methyltransf_28: Puta 88.7 1.4 3.1E-05 39.9 6.8 57 104-160 5-72 (252)
440 PRK05867 short chain dehydroge 88.7 2.4 5.2E-05 37.4 8.1 72 116-188 8-97 (253)
441 PRK10310 PTS system galactitol 88.6 2.1 4.6E-05 33.4 6.8 20 186-205 74-93 (94)
442 PF02153 PDH: Prephenate dehyd 88.5 1.1 2.4E-05 40.9 6.0 75 129-211 1-76 (258)
443 PRK07533 enoyl-(acyl carrier p 88.5 4 8.7E-05 36.4 9.5 96 116-212 9-146 (258)
444 PRK08293 3-hydroxybutyryl-CoA 88.5 1.2 2.5E-05 41.2 6.1 90 118-212 4-118 (287)
445 PHA01634 hypothetical protein 88.4 2.8 6E-05 35.7 7.7 84 100-183 11-98 (156)
446 TIGR02356 adenyl_thiF thiazole 88.4 1.2 2.6E-05 39.2 6.0 31 117-147 21-54 (202)
447 TIGR01832 kduD 2-deoxy-D-gluco 88.3 2.3 5E-05 37.1 7.7 71 116-187 4-90 (248)
448 PF07091 FmrO: Ribosomal RNA m 88.2 1.3 2.8E-05 41.0 6.2 139 114-262 103-248 (251)
449 cd05564 PTS_IIB_chitobiose_lic 88.2 1.8 4E-05 33.8 6.3 77 119-214 1-78 (96)
450 cd01065 NAD_bind_Shikimate_DH 88.2 2.6 5.6E-05 34.5 7.5 78 106-186 7-90 (155)
451 PRK05808 3-hydroxybutyryl-CoA 88.2 1.5 3.2E-05 40.2 6.7 135 119-262 5-187 (282)
452 cd08258 Zn_ADH4 Alcohol dehydr 88.2 18 0.00039 33.1 13.8 96 109-213 157-263 (306)
453 TIGR01035 hemA glutamyl-tRNA r 88.2 3.4 7.3E-05 40.6 9.5 95 113-212 176-274 (417)
454 TIGR00853 pts-lac PTS system, 88.1 1.1 2.4E-05 35.2 4.9 70 118-206 4-73 (95)
455 PRK06249 2-dehydropantoate 2-r 88.1 5.8 0.00013 37.0 10.7 90 118-213 6-105 (313)
456 KOG3115 Methyltransferase-like 88.0 1.9 4.2E-05 39.3 7.0 97 119-215 63-184 (249)
457 PRK06182 short chain dehydroge 88.0 3.5 7.5E-05 36.9 8.8 68 117-188 3-85 (273)
458 KOG1227 Putative methyltransfe 88.0 0.37 8E-06 46.0 2.5 126 72-209 156-290 (351)
459 PRK07523 gluconate 5-dehydroge 87.9 2.5 5.5E-05 37.2 7.8 70 116-187 9-97 (255)
460 PRK07326 short chain dehydroge 87.8 4.6 0.0001 34.9 9.2 69 117-187 6-92 (237)
461 PRK06128 oxidoreductase; Provi 87.8 5.1 0.00011 36.6 10.0 95 117-213 55-190 (300)
462 PRK09242 tropinone reductase; 87.8 6.2 0.00013 34.8 10.2 70 117-187 9-98 (257)
463 PRK08643 acetoin reductase; Va 87.6 4.8 0.0001 35.4 9.3 69 117-187 2-89 (256)
464 PRK05993 short chain dehydroge 87.6 4.1 9E-05 36.7 9.1 67 117-187 4-86 (277)
465 PRK12491 pyrroline-5-carboxyla 87.5 2.4 5.3E-05 39.1 7.7 100 118-227 3-108 (272)
466 PRK11524 putative methyltransf 87.4 1.8 3.8E-05 40.1 6.7 55 104-160 197-252 (284)
467 PTZ00075 Adenosylhomocysteinas 87.2 2 4.4E-05 43.2 7.4 95 106-213 242-340 (476)
468 COG1893 ApbA Ketopantoate redu 86.8 7.7 0.00017 36.6 10.7 102 119-228 2-114 (307)
469 PF03514 GRAS: GRAS domain fam 86.7 7.1 0.00015 37.9 10.7 109 104-212 98-242 (374)
470 PRK07680 late competence prote 86.7 2.4 5.1E-05 38.8 7.1 87 119-213 2-94 (273)
471 PRK08229 2-dehydropantoate 2-r 86.7 15 0.00033 34.2 12.7 89 119-212 4-105 (341)
472 PRK08339 short chain dehydroge 86.6 5.9 0.00013 35.5 9.5 71 116-187 7-95 (263)
473 PRK05872 short chain dehydroge 86.6 4.3 9.2E-05 37.2 8.7 70 116-187 8-95 (296)
474 cd08259 Zn_ADH5 Alcohol dehydr 86.5 5.1 0.00011 36.2 9.1 93 112-213 158-255 (332)
475 PRK07231 fabG 3-ketoacyl-(acyl 86.5 6.3 0.00014 34.2 9.4 69 117-187 5-91 (251)
476 PRK11730 fadB multifunctional 86.4 6.6 0.00014 41.4 11.0 139 118-263 314-498 (715)
477 COG0569 TrkA K+ transport syst 86.4 2.8 6E-05 37.7 7.2 81 119-203 2-89 (225)
478 PRK07454 short chain dehydroge 86.3 5.3 0.00011 34.8 8.8 70 116-187 5-93 (241)
479 cd05280 MDR_yhdh_yhfp Yhdh and 86.2 6.5 0.00014 35.5 9.6 89 116-213 146-242 (325)
480 PF01408 GFO_IDH_MocA: Oxidore 86.2 2.7 5.8E-05 32.8 6.2 90 119-217 2-96 (120)
481 smart00829 PKS_ER Enoylreducta 86.1 13 0.00028 32.2 11.2 95 110-213 98-204 (288)
482 PF02737 3HCDH_N: 3-hydroxyacy 86.1 1.6 3.4E-05 37.9 5.3 89 119-213 1-113 (180)
483 KOG2793 Putative N2,N2-dimethy 85.9 3.6 7.8E-05 38.1 7.7 100 116-215 86-200 (248)
484 PF02005 TRM: N2,N2-dimethylgu 85.8 2.2 4.7E-05 41.7 6.6 94 117-215 50-155 (377)
485 PRK07067 sorbitol dehydrogenas 85.8 6.1 0.00013 34.8 9.1 68 117-186 6-89 (257)
486 PRK06701 short chain dehydroge 85.8 2.9 6.2E-05 38.3 7.1 96 116-213 45-180 (290)
487 PRK07530 3-hydroxybutyryl-CoA 85.8 3.3 7E-05 38.2 7.5 87 118-211 5-116 (292)
488 KOG2671 Putative RNA methylase 85.8 0.73 1.6E-05 44.8 3.2 102 111-213 203-353 (421)
489 PF03807 F420_oxidored: NADP o 85.7 2.5 5.5E-05 31.9 5.7 78 125-210 6-90 (96)
490 COG4017 Uncharacterized protei 85.7 4.1 9E-05 36.9 7.7 118 77-217 12-132 (254)
491 cd01483 E1_enzyme_family Super 85.7 4.5 9.7E-05 33.1 7.6 29 119-147 1-32 (143)
492 PRK00094 gpsA NAD(P)H-dependen 85.6 2.8 6.1E-05 38.6 7.1 87 119-212 3-103 (325)
493 PRK07024 short chain dehydroge 85.6 3.6 7.8E-05 36.4 7.5 69 118-187 3-88 (257)
494 PRK07819 3-hydroxybutyryl-CoA 85.5 3.8 8.2E-05 38.1 7.8 89 118-212 6-119 (286)
495 cd08273 MDR8 Medium chain dehy 85.5 14 0.0003 33.5 11.5 92 111-212 134-231 (331)
496 TIGR01751 crot-CoA-red crotony 85.5 10 0.00022 36.3 11.0 94 112-213 185-309 (398)
497 PRK12744 short chain dehydroge 85.4 5 0.00011 35.4 8.3 94 117-212 8-143 (257)
498 COG1748 LYS9 Saccharopine dehy 85.4 2.4 5.1E-05 41.7 6.7 67 118-184 2-75 (389)
499 KOG2539 Mitochondrial/chloropl 85.3 3.7 7.9E-05 41.4 7.9 95 118-215 202-316 (491)
500 PRK07774 short chain dehydroge 85.3 4 8.7E-05 35.6 7.6 70 116-187 5-93 (250)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-38 Score=285.36 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=158.5
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHH
Q 023971 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar 155 (274)
..|++ +++.||.+|...|+| .|+.|++.+++.+++.+|.+|| ||||||+++..+++..+ ++|+|+|+|+.||++|+
T Consensus 15 ~vF~~-ia~~YD~~n~~~S~g-~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 15 KVFDK-VAKKYDLMNDLMSFG-LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred HHHHh-hHHHHHhhcccccCc-chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 34555 566699999999998 8889999999999999999999 99999999999999865 89999999999999999
Q ss_pred HhCCC-----ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHH-Hhh
Q 023971 156 EKYDT-----VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQ-RKQ 227 (274)
Q Consensus 156 ~k~~~-----v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~-~~~ 227 (274)
+|..+ ++|++|||++|||+|++||+|+++|++||++|+++||+|++|||||||+++|.+... .+++... +.+
T Consensus 93 ~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 93 EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred HHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 99765 789999999999999999999999999999999999999999999999999954321 1122221 111
Q ss_pred C---------------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEE
Q 023971 228 F---------------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVL 267 (274)
Q Consensus 228 ~---------------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~ 267 (274)
+ ...++..||+++++.++++++||..+.|++--..-+++.
T Consensus 173 ~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~ 233 (238)
T COG2226 173 YFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALH 233 (238)
T ss_pred HHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEE
Confidence 1 112789999999999999999999888887655544443
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=100.00 E-value=1.5e-36 Score=273.91 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=91.3
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
..+|+. ++..||.+|+..++| .|+.|++.+++.+...+|.+|| ||||||+++..+++. ++ ++|+|+|+|++||++
T Consensus 10 ~~~Fd~-ia~~YD~~n~~ls~g-~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 10 RKMFDR-IAPRYDRMNDLLSFG-QDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp -----------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHH-HHHHhCCCccccCCc-HHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 445665 566699999999998 8888999999999999999999 999999999999886 45 899999999999999
Q ss_pred HHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc---CCChhHHHHHH
Q 023971 154 IKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH---PQGREALQKQR 225 (274)
Q Consensus 154 Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~---~~gr~~l~~~~ 225 (274)
|++|. .++++++||+++||+++++||+|+++|++|+++|++++++|++|||||||+++|.+ |.+ ..+...+
T Consensus 88 a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~-~~~~~~~ 166 (233)
T PF01209_consen 88 ARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN-PLLRALY 166 (233)
T ss_dssp HHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS-HHHHHHH
T ss_pred HHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC-chhhcee
Confidence 99874 37899999999999999999999999999999999999999999999999999943 332 2333332
Q ss_pred hhCc---------------------ccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 226 KQFP---------------------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 226 ~~~~---------------------~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..|. ..++.+||+.+++.++|+++||+.+.++.-...
T Consensus 167 ~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 167 KFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp HH--------------------------------------------------------
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2221 127889999999999999999999888765444
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-33 Score=251.74 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=164.9
Q ss_pred cccccccccccccCCCCCCCccc-cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHH
Q 023971 54 QLSLSTRKTSIGAASPPDEGTVS-VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVD 131 (274)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~ 131 (274)
..+..++.+.++-.+..+++..- +-..++.+++.||.+|++.+.| .|+.|.+..+..++...+.+|| ||||||+++.
T Consensus 38 ~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlG-iHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaF 116 (296)
T KOG1540|consen 38 SLSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLG-IHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAF 116 (296)
T ss_pred ccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHhhhccCCCCCCeEEEecCCcchhHH
Confidence 44555666666665555544443 3334444677799999999998 9999999999999999999999 9999999999
Q ss_pred HHHHhC-C------CcEEEEeCcHHHHHHHHHhC---C-----CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHH
Q 023971 132 RVVESS-P------SLLLVVHDSLFVLAGIKEKY---D-----TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQV 196 (274)
Q Consensus 132 ~L~~~~-~------~~V~gVD~S~~ML~~Ar~k~---~-----~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~a 196 (274)
.+.+.. . .+|+++|++++||+++++|. + .+.|++||||+|||++++||+.+++|+++|+.+++++
T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296)
T KOG1540|consen 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296)
T ss_pred HHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHH
Confidence 987752 1 68999999999999999874 1 2789999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhhC---------------------cccccccCCCHHHHHHHHHhCCCcE
Q 023971 197 FETLANRCSPGARVVISHPQG--REALQKQRKQF---------------------PDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 197 l~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~~---------------------~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++|++|||||||||.|.+... ...+..++.+| ...|+..||+++|+..+.+++||..
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540|consen 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred HHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcc
Confidence 999999999999999954321 12333333222 2238999999999999999999988
Q ss_pred eE-EEecC
Q 023971 254 DN-FVDES 260 (274)
Q Consensus 254 v~-~~d~~ 260 (274)
+. |..--
T Consensus 277 ~~~ye~lt 284 (296)
T KOG1540|consen 277 VNGYENLT 284 (296)
T ss_pred ccccccce
Confidence 86 54433
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.97 E-value=3.1e-30 Score=235.49 Aligned_cols=191 Identities=14% Similarity=0.046 Sum_probs=153.6
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
..+|+. +++.||.++...+.+ .+..|.+.+++.+++.++++|| ||||||.++..+++. ++ ++|+|||+|++||+.
T Consensus 36 ~~~f~~-~A~~YD~~~~~~s~g-~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 36 QALFNR-IAPVYDNLNDLLSLG-QHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred HHHHHH-hhhHHHHhhhhhcCC-hhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 445555 666699988877666 4556888888888889999999 999999999988876 45 799999999999999
Q ss_pred HHHhC--------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHH
Q 023971 154 IKEKY--------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQK 223 (274)
Q Consensus 154 Ar~k~--------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~ 223 (274)
|+++. ++++++++|++++|+++++||+|++++++++++|+.++++|++|+|||||+++|.+... ......
T Consensus 114 A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~ 193 (261)
T PLN02233 114 AASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTS 193 (261)
T ss_pred HHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHH
Confidence 98763 36899999999999999999999999999999999999999999999999999975321 111111
Q ss_pred HHhh--------------------CcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023971 224 QRKQ--------------------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 224 ~~~~--------------------~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
+... |...++..|++.+|+.++++++||+++.+.+-......++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 194 MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 1110 111256779999999999999999999888877666665543
No 5
>PRK05785 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=212.38 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGE--IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
..+|+. +++.||.+|...++| .+..|++.+++.+. ..++.+|| ||||||.++..+++....+|+|+|+|++||++
T Consensus 12 ~~~f~~-iA~~YD~~n~~~s~g-~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 12 QEAYNK-IPKAYDRANRFISFN-QDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred HHHHHh-hhHHHHHhhhhccCC-CcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 445665 666699999988887 55678888877652 24578999 99999999999988733599999999999999
Q ss_pred HHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEEEcCCChhHHHHHHhhC----
Q 023971 154 IKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVISHPQGREALQKQRKQF---- 228 (274)
Q Consensus 154 Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvIs~~~gr~~l~~~~~~~---- 228 (274)
|+++. .++++|++++|+++++||+|++++++||+.|++++++|++|+|||++ .+-++.|.+. ....+...|
T Consensus 90 a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~~~p~~~-~~~~~~~~y~~~~ 165 (226)
T PRK05785 90 NLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAMGKPDNV-IKRKYLSFYLRYI 165 (226)
T ss_pred HHhcc---ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEEeCCCCcH-HHHHHHHHHHHHH
Confidence 99874 46799999999999999999999999999999999999999999953 3333444322 222221111
Q ss_pred -----------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCe--EEEEEEe
Q 023971 229 -----------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF--YLVVLKF 269 (274)
Q Consensus 229 -----------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~--yl~v~~~ 269 (274)
...++..||+++++.++++++| ..+.++..... ++.+++|
T Consensus 166 ~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 166 MPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 1227899999999999999974 66788776655 3444444
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.95 E-value=1.2e-26 Score=205.38 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=154.3
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
+..+.+.++..||..+...+.+ .+..|++.+++.+.+.++++|| +|||||.++..+++. ++ ++|+|+|+|++|++.
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~ 85 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQ-RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSV 85 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCC-chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4566677888899998876665 6777889999999999999999 999999999999876 45 799999999999999
Q ss_pred HHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHh
Q 023971 154 IKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRK 226 (274)
Q Consensus 154 Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~ 226 (274)
|+++. ++++++++|++++|+.+++||+|++++.+++.+++.++++++.|+|||||++++.+.... ..+.....
T Consensus 86 a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 165 (231)
T TIGR02752 86 GRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYF 165 (231)
T ss_pred HHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHH
Confidence 99764 468999999999999899999999999999999999999999999999999998653221 11121110
Q ss_pred h---------------------CcccccccCCCHHHHHHHHHhCCCcEeEEEecC--CeEEEEEEe
Q 023971 227 Q---------------------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES--GFYLVVLKF 269 (274)
Q Consensus 227 ~---------------------~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~--~~yl~v~~~ 269 (274)
. +....+..||+.+++.++++++||+++.++.-. ..+++|++|
T Consensus 166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 166 FYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0 111245679999999999999999988777644 345566554
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.91 E-value=1e-22 Score=192.59 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=124.5
Q ss_pred HHHHHHHHhCCC-----CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023971 103 QRIDQIISAGEI-----DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 103 ~w~~~ll~~~~~-----~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
..+..+++.+++ .++.+|| ||||+|.++..|+++...+|+|||+|+.|++.|+++. ++++|+++|+++
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 356677888887 7889999 9999999999998864469999999999999998752 358999999999
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh------hH--------HHHHHhhCcccccccC
Q 023971 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR------EA--------LQKQRKQFPDVIVSDL 236 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr------~~--------l~~~~~~~~~~si~~f 236 (274)
+|+.+++||+|++...++++.|+.++++|++|+|||||+|+|.+...+ .. +..+...+ ....+
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~---~~p~~ 256 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY---YLPAW 256 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc---cCCCC
Confidence 999999999999999999989999999999999999999999643211 00 01111111 12234
Q ss_pred CCHHHHHHHHHhCCCcEeEEEecC
Q 023971 237 PDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
.+.+++.++++++||+++...|-.
T Consensus 257 ~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 257 CSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCHHHHHHHHHHCCCCeeEeeeCc
Confidence 589999999999999998887644
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.90 E-value=3.6e-23 Score=185.96 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCc
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sF 178 (274)
.+....+.+++.+...++.+|| +|||||.++..|.+.+ .+|+|+|+|++|++.|+++.+...++++|++++|+.+++|
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 4455667788877766778999 9999999999987765 5999999999999999999887889999999999999999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc----ccccccCCCHHHHHHHHHhCCCc
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP----DVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~----~~si~~fps~~eL~~ll~~aGF~ 252 (274)
|+|++++.++|..|+.+++.++.|+|||||+++++.+.. ..+.+++..+. ..+...|++.+++..++++.|+.
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~-~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ-GSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC-CchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 999999999999999999999999999999999985432 33444443332 22457799999999999988875
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.90 E-value=5.9e-23 Score=185.61 Aligned_cols=152 Identities=10% Similarity=0.147 Sum_probs=122.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
....+++.+...++.+|| ||||||.++..++++.| .+|+|+|+|+.|++.|+++ +++++++|+++++ .+++||+|
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhhCC-CCCCceEE
Confidence 557888888888999999 99999999999988866 7999999999999999875 6899999999986 56899999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHH--hhCcc-------cccccCCCHHHHHHHHH
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG-----REALQKQR--KQFPD-------VIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~--~~~~~-------~si~~fps~~eL~~ll~ 247 (274)
+++++++|+.|+++++++++|+|||||+++|..+.. ........ ..|.. .....+.+.+++.++++
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999964321 11111111 11211 01235778999999999
Q ss_pred hCCCcEeEEEe
Q 023971 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
++||++..++.
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998665543
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.90 E-value=6.7e-23 Score=187.38 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=127.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCCCCCCcc
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf~~~sFD 179 (274)
..+.+++.+++.++.+|| ||||+|..+..+++....+|+|+|+|++|++.|+++.. ++.+.++|++++|+.+++||
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 477888889999999999 99999999988876543699999999999999998854 58999999999999999999
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh---hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023971 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR---EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr---~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++...+.+.. ++.+++++++|+|||||+|+|++.... .+........ ......+++.+++.++++++||+++
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI-KKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-HhcCCCCCCHHHHHHHHHHCCCCee
Confidence 999976655543 889999999999999999999764221 1111221111 1112457899999999999999999
Q ss_pred EEEecCCeE
Q 023971 255 NFVDESGFY 263 (274)
Q Consensus 255 ~~~d~~~~y 263 (274)
.+.|-..+|
T Consensus 199 ~~~d~~~~~ 207 (263)
T PTZ00098 199 VAKDISDYW 207 (263)
T ss_pred eEEeCcHHH
Confidence 998866554
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.90 E-value=4.2e-22 Score=189.06 Aligned_cols=179 Identities=13% Similarity=0.009 Sum_probs=135.9
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~ 153 (274)
+..|+. .+..||..... +.....+++.+++...+ .++.+|| ||||||.++..+++..+ .+|+|+|+|++|++.
T Consensus 77 ~~~y~~-lA~~YD~~~~~---~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~ 152 (340)
T PLN02490 77 FWFYRF-LSIVYDHIINP---GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152 (340)
T ss_pred eeEccc-eeeecCCCeec---CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 444444 45558864332 22223355667776655 4678999 99999999888877644 789999999999999
Q ss_pred HHHhC--CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhCcc
Q 023971 154 IKEKY--DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR-EALQKQRKQFPD 230 (274)
Q Consensus 154 Ar~k~--~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~~~ 230 (274)
|+++. .+++++++|++++|+.+++||+|+++..+++..|++++++|++|+|||||+++|..+... .+..+. +.+
T Consensus 153 A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~---~~~ 229 (340)
T PLN02490 153 AKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF---FAD 229 (340)
T ss_pred HHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH---hhh
Confidence 99875 478999999999999999999999999999999999999999999999999988643221 122211 111
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023971 231 VIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.-..+++.+|+.++++++||+.+++++....|
T Consensus 230 -~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 230 -VWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred -hhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 11246899999999999999999988855553
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.89 E-value=7e-22 Score=186.34 Aligned_cols=179 Identities=9% Similarity=0.029 Sum_probs=130.3
Q ss_pred cccccccccccccccccCC---ccchhHHHHHHHHH-HhC-------CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEE
Q 023971 77 VVNFEDFTEIDWSFLDSDE---LNFKEHIQRIDQII-SAG-------EIDESSKVL-VSISSEEFVDRVVESSPSLLLVV 144 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~---~~~~~~~~w~~~ll-~~~-------~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gV 144 (274)
+..|++..+.-||...... .+......++++.+ +.+ ...++.+|| ||||+|.++..|++.+ .+|+||
T Consensus 81 ~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g-~~V~GI 159 (322)
T PLN02396 81 LAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMG-ATVTGV 159 (322)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcC-CEEEEE
Confidence 7788888887667533211 01111222333332 111 234677999 9999999999998765 599999
Q ss_pred eCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 145 HDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 145 D~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|+|++|++.|+++. .+++++++|++++|+.+++||+|++..+++|+.|++++++++.|+|||||+++|+.....
T Consensus 160 D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 160 DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999763 258899999999999889999999999999999999999999999999999999855321
Q ss_pred --hHHHHH-----HhhC-cc-cc-cccCCCHHHHHHHHHhCCCcEeEE
Q 023971 219 --EALQKQ-----RKQF-PD-VI-VSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 219 --~~l~~~-----~~~~-~~-~s-i~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
.+.... ...+ .. .+ -..|.+++|+.++++++||+++..
T Consensus 240 ~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 240 MRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 111111 1111 11 11 235899999999999999988764
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.88 E-value=8.4e-22 Score=178.31 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=134.4
Q ss_pred cccccccccccccccCCccchhHHHH----HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023971 79 NFEDFTEIDWSFLDSDELNFKEHIQR----IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w----~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
+||++.++ ++...+....|.....- +..+++.+. .++.+|| +|||||.++..|++.+ .+|+|+|+|++|++.
T Consensus 5 ~fd~~a~~-f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~ 81 (255)
T PRK11036 5 NFDDIAEK-FSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQR 81 (255)
T ss_pred ChhhHHHH-HHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence 68885555 88888777776544332 234566655 4567999 9999999999998876 599999999999999
Q ss_pred HHHhC------CCceEEEeeccCCC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH-HHHH-
Q 023971 154 IKEKY------DTVKCWQGELIYVP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA-LQKQ- 224 (274)
Q Consensus 154 Ar~k~------~~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~-l~~~- 224 (274)
|+++. ++++++++|+++++ +.+++||+|++..+++++.++.+++++++|+|||||+++|........ +...
T Consensus 82 a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~ 161 (255)
T PRK11036 82 AKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMV 161 (255)
T ss_pred HHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHH
Confidence 99863 35789999999885 667899999999999999999999999999999999999864322111 1111
Q ss_pred -------HhhCc-----ccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 225 -------RKQFP-----DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 225 -------~~~~~-----~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..... ........+++++.++++++||+++.+.--..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 162 AGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred ccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEE
Confidence 01111 001233457899999999999998866554333
No 14
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.88 E-value=2.1e-21 Score=168.82 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=145.4
Q ss_pred cccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHH
Q 023971 79 NFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar 155 (274)
+|+.+.++ ||..+.....+ .+..|+..+++.+...++.+|| +|||+|.++..+++..+ .+++|+|+++.|++.++
T Consensus 4 ~~~~~~~~-y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 4 MFDRIAPK-YDLLNDLLSFG-LHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HHHHHHhh-hhHHHHHHhcc-cHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 46665555 88877654444 4567888888888887889999 99999999999988765 58999999999999999
Q ss_pred HhCC---CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhC--
Q 023971 156 EKYD---TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQF-- 228 (274)
Q Consensus 156 ~k~~---~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~-- 228 (274)
++.+ ++.++.+|+.++|+.+++||+|++++++++..++..+++++.+.|||||++++.+.... ..+......+
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 161 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLK 161 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHH
Confidence 8864 68999999999998888999999999999999999999999999999999998543211 1111111110
Q ss_pred ----------c---------ccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEE
Q 023971 229 ----------P---------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 229 ----------~---------~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
. ..+...+++.+++.++++++||+++..+........+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~ 218 (223)
T TIGR01934 162 NVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAI 218 (223)
T ss_pred HhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeE
Confidence 0 0122457899999999999999988888777665333
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.88 E-value=2.7e-21 Score=169.80 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=145.8
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHH
Q 023971 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGI 154 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~A 154 (274)
.+|+++ +..||..+.....+ .+..|+..++..+...++.+|| +|||+|.++..++...+ .+++|+|+++.|++.+
T Consensus 15 ~~~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 92 (239)
T PRK00216 15 EMFDSI-APKYDLMNDLLSFG-LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVG 92 (239)
T ss_pred HHHHHh-hhhHHHHHHHHhcC-CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Confidence 356664 45588655433333 4556888888888888889999 99999999999988764 7999999999999999
Q ss_pred HHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHh
Q 023971 155 KEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRK 226 (274)
Q Consensus 155 r~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~ 226 (274)
+++. .++.+..+|+.++++.+++||+|++++++++..++...++++.++|+|||++++.+... ...+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~ 172 (239)
T PRK00216 93 REKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYD 172 (239)
T ss_pred HHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHH
Confidence 9874 35789999999999888999999999999999999999999999999999998853211 111111110
Q ss_pred hC---------------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023971 227 QF---------------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 227 ~~---------------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
.+ ...++..+++.+++.++++++||+++..+.....++.|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 236 (239)
T PRK00216 173 FYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVG 236 (239)
T ss_pred HHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEE
Confidence 00 00123568899999999999999999888876666665544
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.87 E-value=2.7e-21 Score=174.29 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=130.8
Q ss_pred ccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE
Q 023971 88 WSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ 165 (274)
Q Consensus 88 Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~ 165 (274)
||.-.+.. +......+.+.+++.+.+.++.+|| ||||||.++..+++..+ .+|+|||+|+.|++.|+++.+++.++.
T Consensus 4 w~~~~Y~~-~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~ 82 (258)
T PRK01683 4 WNPSLYLK-FEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE 82 (258)
T ss_pred CCHHHHHH-HHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE
Confidence 66433321 3334445778889888889999999 99999999999988766 799999999999999999999999999
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh-----HHHHH------HhhCccc--c
Q 023971 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE-----ALQKQ------RKQFPDV--I 232 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~-----~l~~~------~~~~~~~--s 232 (274)
+|+++++ .+++||+|++++.++|+.|+.+++++++++|||||++++..+.... .+.+. ...+... .
T Consensus 83 ~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 161 (258)
T PRK01683 83 ADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGAR 161 (258)
T ss_pred CchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhcccccc
Confidence 9998876 4579999999999999999999999999999999999996432211 11111 1111111 1
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 233 VSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
...+|+.+++.+++.++|+.+..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 162 RAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred CcCCCCHHHHHHHHHhCCCceeeee
Confidence 2457899999999999999764433
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.86 E-value=6.4e-22 Score=149.11 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=82.0
Q ss_pred E-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023971 121 L-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
| +|||+|..+..|++....+|+|+|+|++|++.++++... +.++++|++++|+++++||+|++...++++.++++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 7 999999999999988337999999999999999998753 5699999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEE
Q 023971 198 ETLANRCSPGARVVI 212 (274)
Q Consensus 198 ~el~RvLKPGGrlvI 212 (274)
+|+.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999987
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.85 E-value=1.8e-20 Score=170.55 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=116.3
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEe
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
..+.++++|| ||||+|..+..+++. ++ ++|+|+|+|++|++.|+++ ++++++.++|++++|+.+++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 5678999999 999999887766654 45 6899999999999999975 35789999999999998899999999
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh----HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE----ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~----~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+.++++..++.+++++++|+|||||+|++.+..... .+......+.. ......+.+++.++++++||..+.....
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 999999999999999999999999999996432211 11111111211 2334567899999999999988766443
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=2.4e-20 Score=175.59 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h----CCCceEEEeeccCCCCCCCCc
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k----~~~v~~~~gDae~LPf~~~sF 178 (274)
..++..+...++.+|| ||||+|.++..+++.++..|+|||+|+.|+.+++. + .+++.++.+|++++|+ +++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 3455566655778999 99999999999988877679999999999987542 2 2368999999999998 8999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHH-HHhhCccc-ccccCCCHHHHHHHHHhCCCcEe
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQK-QRKQFPDV-IVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~-~~~~~~~~-si~~fps~~eL~~ll~~aGF~~v 254 (274)
|+|+|..+++|..|+..++++++|+|||||++++.+.. +...... -...|... .+..+|+.+++.++++++||+++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 99999988888899999999999999999999985321 1110000 00111111 12346899999999999999999
Q ss_pred EEEecCCe
Q 023971 255 NFVDESGF 262 (274)
Q Consensus 255 ~~~d~~~~ 262 (274)
..++....
T Consensus 271 ~~~~~~~t 278 (322)
T PRK15068 271 RIVDVSVT 278 (322)
T ss_pred EEEeCCCC
Confidence 98876554
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.85 E-value=1.4e-20 Score=183.96 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=125.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCcc
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD 179 (274)
...+++.+.+.++.+|| ||||+|.++..|++....+|+|+|+|++|++.|+++.. +++|.++|+.++|+++++||
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 45677777788889999 99999999988877644689999999999999987642 57899999999999889999
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh--HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE--ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~--~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
+|++..++.|+.|+++++++++|+|||||+++|.+..... ........+.. ....+++.+++.++++++||+++.+.
T Consensus 335 ~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 335 VIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQ-RGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999999999999999999999999999999997542110 00111111111 12357889999999999999998877
Q ss_pred ecCCeE
Q 023971 258 DESGFY 263 (274)
Q Consensus 258 d~~~~y 263 (274)
+-.+.|
T Consensus 414 d~~~~~ 419 (475)
T PLN02336 414 DRTDQF 419 (475)
T ss_pred cchHHH
Confidence 644433
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.85 E-value=3e-20 Score=174.72 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=119.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h----CCCceEEEeeccCCCCCCCCc
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k----~~~v~~~~gDae~LPf~~~sF 178 (274)
.+++..+...++.+|| ||||||.++..++..++..|+|||+|+.|+++++. + ...+.+..++++++|+. ++|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 3566667777889999 99999999988887776689999999999987542 2 23578889999999974 589
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--Chh--H--HHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GRE--A--LQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~--~--l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
|+|++..++.|..++..+|++++|+|||||+|++.+.. +.. . ....+.... .+..+|+.+++.++++++||+
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~--nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMK--NVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcc--ccccCCCHHHHHHHHHHCCCe
Confidence 99999998999999999999999999999999986421 110 0 001111111 233578999999999999999
Q ss_pred EeEEEecCCe
Q 023971 253 IDNFVDESGF 262 (274)
Q Consensus 253 ~v~~~d~~~~ 262 (274)
.++..+....
T Consensus 268 ~V~i~~~~~t 277 (314)
T TIGR00452 268 NFRILDVLKT 277 (314)
T ss_pred EEEEEeccCC
Confidence 9988875543
No 22
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.84 E-value=8e-21 Score=161.57 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=96.9
Q ss_pred EEEeCcHHHHHHHHHhC--------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 142 LVVHDSLFVLAGIKEKY--------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 142 ~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|||+|++||++|++|. .+++|++||++++|+.+++||+|++.++++++.|+.++++|++|+|||||+|+|.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 58999999999998763 2589999999999999999999999999999999999999999999999999986
Q ss_pred cCCCh-hHHHH-H------------------HhhC--cccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 214 HPQGR-EALQK-Q------------------RKQF--PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 214 ~~~gr-~~l~~-~------------------~~~~--~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+.... ..+.. . ...| ...++..||+.+++.++++++||+.+.+..-...
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 53211 11110 0 0111 1226788999999999999999998887665544
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.84 E-value=1.9e-20 Score=169.25 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=104.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEe
Q 023971 114 IDESSKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++.+|| ||||||.++..+++. .+ .+|+|||+|++|++.|+++.. +++++++|++++|+. .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 45778999 999999999888773 35 799999999999999998742 589999999999874 4999999
Q ss_pred cccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCC---Ch---hHHHHHH------hhCcc--c-------ccccCC-CH
Q 023971 184 YFLPAMPFP--LDQVFETLANRCSPGARVVISHPQ---GR---EALQKQR------KQFPD--V-------IVSDLP-DQ 239 (274)
Q Consensus 184 ~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~---gr---~~l~~~~------~~~~~--~-------si~~fp-s~ 239 (274)
+++++++.+ +.+++++++|+|||||.|++++.. +. ..+...+ ..|.. + ....+| +.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 999888753 458999999999999999997521 10 1111111 11111 0 011233 79
Q ss_pred HHHHHHHHhCCCcEe
Q 023971 240 MTLQKAAGNHCFQID 254 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v 254 (274)
++..++++++||+.+
T Consensus 212 ~~~~~~L~~aGF~~v 226 (247)
T PRK15451 212 ETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHcCchhH
Confidence 999999999999654
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.84 E-value=1.7e-19 Score=157.44 Aligned_cols=154 Identities=17% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~ 176 (274)
.++.+++.+.+.++.+|| +|||||.++..+++.. + ++|+|+|+|+.|++.|+++ .+++.+.++|++++|+.++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCC
Confidence 455677788899999999 9999999999998874 5 7999999999999999987 3568999999999999999
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC---------hhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG---------REALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g---------r~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
+||+|++...+++..|+..++++++++|||||++++..+.. ...+.+....+.. .........++.++++
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFADPWLGRRLPGLFR 165 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999865321 1122333333221 1223334578999999
Q ss_pred hCCCcEeEEEe
Q 023971 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
++||.++....
T Consensus 166 ~aGf~~~~~~~ 176 (241)
T PRK08317 166 EAGLTDIEVEP 176 (241)
T ss_pred HcCCCceeEEE
Confidence 99998765533
No 25
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.84 E-value=1.2e-20 Score=155.58 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=109.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
..++.+|| ||||+|.++..+++.+. +|+|+|+|+.|++. ..+.....+.+..+..+++||+|+++.+++++.|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 67888999 99999999999977765 99999999999998 4455556666677778899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhC-ccc--ccccCCCHHHHHHHHHhCCCcEeE
Q 023971 193 LDQVFETLANRCSPGARVVISHPQGR-EALQKQRKQF-PDV--IVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~-~~~--si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+.++++++.++|||||+++|..+... .......... ... ....+.+.+++.++++++||++++
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999876532 2222222211 111 223677999999999999999875
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.83 E-value=1.7e-19 Score=161.43 Aligned_cols=140 Identities=15% Similarity=0.110 Sum_probs=107.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEe
Q 023971 114 IDESSKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++.+|| ||||||.++..+++. .+ .+|+|+|+|++||+.|+++.. +++++++|++++|+. .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 35778999 999999999988875 24 789999999999999998732 478999999999875 5899999
Q ss_pred cccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCC---h---hHHHHHHhhCc------c----------cccccCCCH
Q 023971 184 YFLPAMPF--PLDQVFETLANRCSPGARVVISHPQG---R---EALQKQRKQFP------D----------VIVSDLPDQ 239 (274)
Q Consensus 184 ~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~g---r---~~l~~~~~~~~------~----------~si~~fps~ 239 (274)
++.++++. ++.+++++++|+|||||+++|+++.. . ..+.+++..+. . .......+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 99999875 45789999999999999999986422 1 11122211110 0 023456789
Q ss_pred HHHHHHHHhCCCcEeE
Q 023971 240 MTLQKAAGNHCFQIDN 255 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v~ 255 (274)
+++.++++++||..+.
T Consensus 209 ~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 209 ETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHcCCchHH
Confidence 9999999999997543
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.82 E-value=2.2e-19 Score=157.16 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
..+.+|| ||||+|.++..+++.++ .+++|+|+|++|++.++++.+ ++.++++|++++|+.+++||+|++..++++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 3446899 99999999999988876 789999999999999998865 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
|+.+++.++.++|||||++++..+... .+.+....+.. ....|++.+++.++++++ |..+.+..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPG-TLHELRQSFGQ-HGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCcc-CHHHHHHHHHH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 999999999999999999999755332 22333222211 335688889999999888 87665544
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.81 E-value=1.4e-18 Score=154.91 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=108.1
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh----CC-CcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCCCCCCccEEEec
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVES----SP-SLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~----~~-~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
...++.+|| ||||||.++..|++. ++ .+|+|+|+|++|++.|+++. +++++.+++++++++.+++||+|+++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 345678999 999999998888652 34 58999999999999999885 46888899999999888999999999
Q ss_pred ccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChh-HHHHH----H----hhC----cccccccCCCHHHHHHHHHhC
Q 023971 185 FLPAMPFPL--DQVFETLANRCSPGARVVISHPQGRE-ALQKQ----R----KQF----PDVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 185 f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~-~l~~~----~----~~~----~~~si~~fps~~eL~~ll~~a 249 (274)
+++||+.|. .+++++++|++| |.++|.+..... ..... . ..+ ...++.++++.+|+.+++++
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~- 213 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ- 213 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-
Confidence 999999875 479999999998 666676433211 10000 0 001 11366789999999999999
Q ss_pred CCcEeE
Q 023971 250 CFQIDN 255 (274)
Q Consensus 250 GF~~v~ 255 (274)
||++..
T Consensus 214 Gf~~~~ 219 (232)
T PRK06202 214 GWRVER 219 (232)
T ss_pred CCeEEe
Confidence 998654
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=2e-19 Score=150.22 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCCeEE-EEcCchHHHHHHHH-hCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEec
Q 023971 115 DESSKVL-VSISSEEFVDRVVE-SSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~-~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~ 184 (274)
.++.+|| +|||||.++..|++ .++ .+++|||+|++|++.|+++ +++++|.++|+++++ +. +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 4578999 99999999999994 455 8999999999999999984 457999999999988 65 899999999
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh----HHHHHHhhCcccccccCC---CHHHHHHHHHhCC
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE----ALQKQRKQFPDVIVSDLP---DQMTLQKAAGNHC 250 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~----~l~~~~~~~~~~si~~fp---s~~eL~~ll~~aG 250 (274)
.++++..++..+++++.|+|||||++++.+..... .+.+....+.. ...... +.+++..+++++|
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSE-VWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHH-HHHHCC---CCCGHHHHHHHTT
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHH-HhhhhhcccCHHHHHHHHHhcC
Confidence 88899999999999999999999999997654211 11111121111 122222 7788999999887
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=1.3e-19 Score=142.28 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=82.7
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecc-c
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYF-L 186 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f-~ 186 (274)
|+.+|| ||||||.++..+++..+ .+|+|||+|++|++.|+++. ++++++++|+...+...+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 578999 99999999999998544 79999999999999999886 578999999933333456799999987 4
Q ss_pred CcCC---CCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 187 PAMP---FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 187 l~~~---~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.++. .+.+++++++.+.|||||+++|..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4322 456899999999999999999963
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.79 E-value=5.7e-18 Score=148.43 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=121.4
Q ss_pred cccccccCCccchhHHHHHHHHHHhC----CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---
Q 023971 87 DWSFLDSDELNFKEHIQRIDQIISAG----EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--- 157 (274)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~w~~~ll~~~----~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--- 157 (274)
.|.......+-...+..|.+.+++.+ .++++.+|| +|||||.++..+++..+ .+|+|+|.|++|++.|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~ 91 (187)
T PRK00107 12 KWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE 91 (187)
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 37766666555556667887776655 234588999 99999999998887665 8999999999999999875
Q ss_pred --CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccccccc
Q 023971 158 --YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSD 235 (274)
Q Consensus 158 --~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~ 235 (274)
.++++++++|+++++. +++||+|++.. ..+++.++++++++|||||++++.+..+.
T Consensus 92 ~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~----------------- 149 (187)
T PRK00107 92 LGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDP----------------- 149 (187)
T ss_pred cCCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh-----------------
Confidence 3458999999999987 78999999874 35788999999999999999999754321
Q ss_pred CCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEe
Q 023971 236 LPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKF 269 (274)
Q Consensus 236 fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~ 269 (274)
..++..+.++.|+.+..... +....+.|+||
T Consensus 150 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 150 ---EEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred ---HHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 24577777888986444322 22445777776
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.79 E-value=2.4e-18 Score=151.93 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=125.8
Q ss_pred cccccccccccccccc-------CCcc-chhHHHHHHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeC
Q 023971 78 VNFEDFTEIDWSFLDS-------DELN-FKEHIQRIDQIISAGE--IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHD 146 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~-------~~~~-~~~~~~w~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~ 146 (274)
..|++....+|+.+.. ..+. ...+..+++.+++.+. ..++.+|| +|||+|.++..+++.+ .+|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~ 85 (219)
T TIGR02021 7 HYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDI 85 (219)
T ss_pred HHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEEC
Confidence 3566654444554443 2221 1234456667777766 56788999 9999999999998765 49999999
Q ss_pred cHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 147 SLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 147 S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|++|++.|+++.+ ++.|.++|+++++ ++||+|++...+.+.+ ++..+++++.+++++|+.+.+. +.+.
T Consensus 86 s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~ 161 (219)
T TIGR02021 86 SEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTA 161 (219)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCch
Confidence 9999999998752 5789999999887 7899999987765543 4678999999999977666654 3322
Q ss_pred hH--HHHHHhhCcc---cccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023971 219 EA--LQKQRKQFPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 219 ~~--l~~~~~~~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
.. ...+...+.. .....+++.+++.++++++||+++..+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 162 WLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 11 1111222221 1224567899999999999999887765443
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.78 E-value=3.6e-18 Score=149.68 Aligned_cols=141 Identities=9% Similarity=0.052 Sum_probs=107.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccE
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+++.+...++.+|| +|||+|.++..|++++ .+|+|+|+|++|++.|+++. .++++.++|+.++++ +++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence 445556666778999 9999999999998876 49999999999999998752 457888999998887 467999
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC-ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ-GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~-gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
|+++.++++.. ++.+++++++|+|||||++++.... .... .... ......+.+|+.+.++ ||+++.+.
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~------~~~~-~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY------PCTV-GFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC------CCCC-CCCCccCHHHHHHHhC--CCeEEEee
Confidence 99998887754 5679999999999999996553221 1110 0000 1122347889998887 89988875
Q ss_pred e
Q 023971 258 D 258 (274)
Q Consensus 258 d 258 (274)
+
T Consensus 170 ~ 170 (197)
T PRK11207 170 E 170 (197)
T ss_pred C
Confidence 4
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.78 E-value=2e-18 Score=152.08 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=113.1
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEecccCcC
Q 023971 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+|| ||||+|.++..+++..+ .+|+|+|+|++|++.|+++.+ ++++..+|+++.|+. ++||+|++...+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 3799 99999999999988765 799999999999999998742 478999999877764 58999999888888
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023971 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
+.++...+++++++|||||++++.+...... .. .........+++.+++.++++++||+++...+-...|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~---~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLL-SA---IEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccC-cc---ccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 8999999999999999999999975431110 00 0001122347899999999999999999888766554
No 35
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.77 E-value=1.6e-17 Score=152.06 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=83.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC----CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP----SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~----~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
..+.+|| +|||||.++..+++..+ ..|+|+|+|++|++.|+++.+++.+.++|++++|+.+++||+|++.+...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~- 162 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPC- 162 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCC-
Confidence 4557899 99999999999877643 36999999999999999999999999999999999999999999876532
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 190 PFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.++|++|+|||||+|++..+..
T Consensus 163 ------~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 163 ------KAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ------CHHHHHhhccCCCEEEEEeCCC
Confidence 3689999999999999976643
No 36
>PRK04266 fibrillarin; Provisional
Probab=99.76 E-value=3.9e-17 Score=147.09 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCC----CCCCCCccE
Q 023971 110 SAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYV----PDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~L----Pf~~~sFD~ 180 (274)
+.+.+.++++|| +|||||.++..+++..+ ++|+|+|.+++||+.++++ .+++.++.+|+.+. ++ .++||+
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCE
Confidence 457889999999 99999999999988754 7999999999999866544 36799999998752 22 357999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
|++.... ......+++++.|+|||||+++|+-+. +. . .+.. ..... .++..++++++||+.+...+-.
T Consensus 145 i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~----~--d~~~-~~~~~--~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 145 IYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKA-RS----I--DVTK-DPKEI--FKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred EEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEec-cc----c--cCcC-CHHHH--HHHHHHHHHHcCCeEEEEEcCC
Confidence 9965321 112245689999999999999995111 10 0 0000 00000 1344589999999999998843
Q ss_pred ----CeEEEEEEe
Q 023971 261 ----GFYLVVLKF 269 (274)
Q Consensus 261 ----~~yl~v~~~ 269 (274)
++|++|+++
T Consensus 213 p~~~~h~~~v~~~ 225 (226)
T PRK04266 213 PYHKDHAAVVARK 225 (226)
T ss_pred CCcCCeEEEEEEc
Confidence 479999886
No 37
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.76 E-value=2.7e-17 Score=145.97 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=128.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar 155 (274)
..+|+.+..+.||.......+.......+..+.......++.+|| ||||+|.++..+.+.+ .+|+++|++++|++.|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~ 87 (233)
T PRK05134 9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVAR 87 (233)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence 456777777777765543222111112233333444456788999 9999999998887765 58999999999999998
Q ss_pred HhCC----CceEEEeeccCCC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH--HHHH----
Q 023971 156 EKYD----TVKCWQGELIYVP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA--LQKQ---- 224 (274)
Q Consensus 156 ~k~~----~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~--l~~~---- 224 (274)
++.. .+.+.++|+.+++ ..++.||+|++...+.+..++..+++++.++|+|||+++++.+..... ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~ 167 (233)
T PRK05134 88 LHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAE 167 (233)
T ss_pred HHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHH
Confidence 7632 4678889998876 345899999999989999999999999999999999999975432111 0000
Q ss_pred -HhhC-c--ccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 225 -RKQF-P--DVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 225 -~~~~-~--~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
...+ . ......+++.+++.++++++||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 168 YVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred HHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 0000 0 0123458899999999999999977653
No 38
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.74 E-value=9e-17 Score=139.77 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=105.2
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-C-CCCCCCccEEEecccCcCCC
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-V-PDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-L-Pf~~~sFD~V~~~f~l~~~~ 191 (274)
.++++|| ||||+|.++..+++.....++|+|+|++|++.|+++ +++++++|+++ + ++.+++||+|+++.+++++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 4678999 999999999988765445789999999999999764 57899999976 5 47789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH---h-h----------CcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQR---K-Q----------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~---~-~----------~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
|+.++++++.|+++ .++|+.+.-..+..... . . |.+.....|.+.+++.++++++||+++...
T Consensus 90 d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 99999999988765 45555333211111110 0 0 111122458899999999999999987654
Q ss_pred e
Q 023971 258 D 258 (274)
Q Consensus 258 d 258 (274)
-
T Consensus 167 ~ 167 (194)
T TIGR02081 167 A 167 (194)
T ss_pred E
Confidence 4
No 39
>PTZ00146 fibrillarin; Provisional
Probab=99.74 E-value=5.3e-17 Score=151.29 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=118.8
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHH----HHHHH
Q 023971 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLF----VLAGI 154 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~----ML~~A 154 (274)
....|.|+.+-+-+.- .+-.-++.+.+.++++|| +|||||.++..+++. ++ +.|+|||+|++ |+++|
T Consensus 104 ~~eyR~w~p~rSKlaa------~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAA------AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred cceeeeeCCcccHHHH------HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 4568889985443211 122335667889999999 999999999999887 44 79999999987 55655
Q ss_pred HHhCCCceEEEeeccC---CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccc
Q 023971 155 KEKYDTVKCWQGELIY---VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDV 231 (274)
Q Consensus 155 r~k~~~v~~~~gDae~---LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~ 231 (274)
+++ +++.++++|+.. ++...++||+|++... .+.+.+.++.++.|+|||||+|+|.. ..+
T Consensus 178 k~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~------------- 240 (293)
T PTZ00146 178 KKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI-KAN------------- 240 (293)
T ss_pred hhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE-ecc-------------
Confidence 544 789999999864 2223468999998864 23344566679999999999999951 111
Q ss_pred ccccCCCHHHH----HHHHHhCCCcEeEEEe----cCCeEEEEEEecCCC
Q 023971 232 IVSDLPDQMTL----QKAAGNHCFQIDNFVD----ESGFYLVVLKFSKSK 273 (274)
Q Consensus 232 si~~fps~~eL----~~ll~~aGF~~v~~~d----~~~~yl~v~~~~~~~ 273 (274)
+++.-|++++. .++|+++||+.++..+ +.++.++|.+..+.+
T Consensus 241 ~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~~~ 290 (293)
T PTZ00146 241 CIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVK 290 (293)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcCCc
Confidence 12333444443 4789999999887766 446677777766543
No 40
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=1e-17 Score=151.54 Aligned_cols=175 Identities=13% Similarity=0.064 Sum_probs=129.2
Q ss_pred cccccccccccccccccC----CccchhHHHHHHHHHHh-CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHH
Q 023971 77 VVNFEDFTEIDWSFLDSD----ELNFKEHIQRIDQIISA-GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFV 150 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~----~~~~~~~~~w~~~ll~~-~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~M 150 (274)
...|++....-||.-... .-++ ....++++.+.. .+ -+|.+|| ||||-|.++..+++.| ..|+|+|+|++|
T Consensus 17 ~~~F~~la~~wwd~~g~f~~LH~~N~-~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~ 93 (243)
T COG2227 17 LDKFEALASRWWDPEGEFKPLHKINP-LRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKP 93 (243)
T ss_pred HHHHHHHHhhhcCCCCceeeeeeecc-chhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHH
Confidence 567888888888843332 1111 111122222211 11 3778999 9999999999999998 599999999999
Q ss_pred HHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH--
Q 023971 151 LAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ-- 224 (274)
Q Consensus 151 L~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~-- 224 (274)
|++|+.+-. .+++.++.+|+|-...++||+|+|.=++.|++||+.+++++.+.+||||.+++++.. |......
T Consensus 94 I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin-rt~ka~~~~ 172 (243)
T COG2227 94 IEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN-RTLKAYLLA 172 (243)
T ss_pred HHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc-cCHHHHHHH
Confidence 999997643 356999999999887899999999999999999999999999999999999998654 3221111
Q ss_pred ---H----hhCcc--cccccCCCHHHHHHHHHhCCCcEeE
Q 023971 225 ---R----KQFPD--VIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 225 ---~----~~~~~--~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
. +..+. .....|..++|+...+..+||++..
T Consensus 173 i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 173 IIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred HHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 0 11111 1335688899999999998887654
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.73 E-value=6.9e-17 Score=149.82 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=112.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
...+++.+.+.++.+|| ||||||.++..++++.| .+++++|. ++|++.|+++. ++++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 45567777888889999 99999999999999887 89999998 79999998752 2478999999876654
Q ss_pred CccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC----hhHHHHHHhhCc----ccccccCCCHHHHHHHH
Q 023971 177 PLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG----REALQKQRKQFP----DVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g----r~~l~~~~~~~~----~~si~~fps~~eL~~ll 246 (274)
.+|+|++...+|...+. .+++++++++|||||+++|.+... ......+..... ..+...+.+.+|+.+++
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence 36999988777765443 479999999999999999975311 111121221111 11344677889999999
Q ss_pred HhCCCcEeEE
Q 023971 247 GNHCFQIDNF 256 (274)
Q Consensus 247 ~~aGF~~v~~ 256 (274)
+++||+.+..
T Consensus 295 ~~aGf~~v~~ 304 (306)
T TIGR02716 295 ESLGYKDVTM 304 (306)
T ss_pred HHcCCCeeEe
Confidence 9999988764
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=6e-17 Score=141.75 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=105.0
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEE
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V 181 (274)
.+++.+...++.+|| +|||||.++..|++++ .+|+|+|+|+.|++.++++.. ++.+.++|+...++. ++||+|
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence 445555565667999 9999999999998876 599999999999999876531 367778888777764 689999
Q ss_pred EecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 182 FLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 182 ~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+++..+++.. +....+++++|+|||||+++|....... .+.. .......+.+|+.++++ +|+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~-------~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA-------DYPCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC-------CCCCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 9998887763 5678999999999999996664221110 0110 01123567899999886 598888764
Q ss_pred c
Q 023971 259 E 259 (274)
Q Consensus 259 ~ 259 (274)
.
T Consensus 170 ~ 170 (195)
T TIGR00477 170 A 170 (195)
T ss_pred c
Confidence 3
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.72 E-value=1.1e-16 Score=140.69 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=125.8
Q ss_pred ccccccccccccccCCcc---chhHHHHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023971 80 FEDFTEIDWSFLDSDELN---FKEHIQRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~~~---~~~~~~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
|..+.-.-||......+. .....+|+++.+.... ...+.+|| +|||+|.++..+++.+. +++|+|+|++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 5 FSALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVA 83 (224)
T ss_pred HHHHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence 444445556655533222 2233456666654321 23467999 99999999998877654 799999999999999
Q ss_pred HHhCC-----CceEEEeeccCCCCCC-CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHH-H
Q 023971 155 KEKYD-----TVKCWQGELIYVPDKW-GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQ-R 225 (274)
Q Consensus 155 r~k~~-----~v~~~~gDae~LPf~~-~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~-~ 225 (274)
+++.. ++.+.++|+++++... ++||+|++...+++..+++.+++++.++|+|||.++++..... ...... .
T Consensus 84 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 84 KLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred HHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 98632 4788899999887653 8999999999999999999999999999999999999754321 111111 0
Q ss_pred h----hC-cc--cccccCCCHHHHHHHHHhCCCcEeEEE
Q 023971 226 K----QF-PD--VIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 226 ~----~~-~~--~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
. .+ +. .....+.+.+++.++++++||+++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0 01 11 012347788999999999999988765
No 44
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.72 E-value=1.5e-16 Score=149.85 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCC---CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------CceEEEe
Q 023971 101 HIQRIDQIISAGEI---DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------TVKCWQG 166 (274)
Q Consensus 101 ~~~w~~~ll~~~~~---~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------~v~~~~g 166 (274)
+..+++.+++.+.. .++.+|| ||||||.++..|++.+ .+|+|+|+|++||+.|+++.+ +++|.++
T Consensus 126 ~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 126 HAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred hHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 33455666666543 2578999 9999999999998876 599999999999999998753 3578888
Q ss_pred eccCCCCCCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEc-CCC--hhHHHHHHhhCccc---ccccCCC
Q 023971 167 ELIYVPDKWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISH-PQG--REALQKQRKQFPDV---IVSDLPD 238 (274)
Q Consensus 167 Dae~LPf~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~-~~g--r~~l~~~~~~~~~~---si~~fps 238 (274)
|++++ +++||+|+|..++.+.++. ...++.+.+ +.+| +++|+. +.. ...++.....+... ....+.+
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s 279 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHA 279 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCC
Confidence 87665 5889999999877665543 245666664 4454 555543 221 11122222223221 1123558
Q ss_pred HHHHHHHHHhCCCcEeEEEe-cCCeEE
Q 023971 239 QMTLQKAAGNHCFQIDNFVD-ESGFYL 264 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v~~~d-~~~~yl 264 (274)
.++++++++++||++....- ...+|+
T Consensus 280 ~eel~~lL~~AGf~v~~~~~~~~~~y~ 306 (315)
T PLN02585 280 EADVERALKKAGWKVARREMTATQFYF 306 (315)
T ss_pred HHHHHHHHHHCCCEEEEEEEeecceeH
Confidence 99999999999998765433 445554
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.71 E-value=8.1e-17 Score=155.07 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=117.0
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCcc
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD 179 (274)
.+...+++.+++.++.+|| ||||+|.++..+++....+|+|+|+|++|++.|+++..+ +++..+|..++ +++||
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD 230 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFD 230 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCC
Confidence 3667788888999999999 999999999989876446999999999999999998753 67888898776 47899
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--cc-ccccCCCHHHHHHHHHhCCCcEe
Q 023971 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--DV-IVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--~~-si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++...+.++. +++..++++.|+|||||++++........ ......+. .+ -...+|+.+++.+.++ .||.+.
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~ 308 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-DTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVME 308 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-CCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEE
Confidence 999887777763 45789999999999999999964321110 00000111 01 1135889999988766 589888
Q ss_pred EEEecCCeE
Q 023971 255 NFVDESGFY 263 (274)
Q Consensus 255 ~~~d~~~~y 263 (274)
.+.+-..+|
T Consensus 309 d~~~~~~hy 317 (383)
T PRK11705 309 DWHNFGADY 317 (383)
T ss_pred EEecChhhH
Confidence 777655544
No 46
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.4e-17 Score=150.74 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=127.6
Q ss_pred cccccccccccccccccC---CccchhHHHHHH-HHHHhC-CCCCC------CeEE-EEcCchHHHHHHHHhCCCcEEEE
Q 023971 77 VVNFEDFTEIDWSFLDSD---ELNFKEHIQRID-QIISAG-EIDES------SKVL-VSISSEEFVDRVVESSPSLLLVV 144 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~---~~~~~~~~~w~~-~ll~~~-~~~~~------~rVL-vGcGTG~l~~~L~~~~~~~V~gV 144 (274)
+..|.+.+..-||.--.. -+.+.+.-.+++ .++... ...|+ .+|| ||||+|-++..|++.+ +.|+||
T Consensus 39 V~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GI 117 (282)
T KOG1270|consen 39 VKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGI 117 (282)
T ss_pred HHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEee
Confidence 678888888888843221 122222223343 334444 22444 6799 9999999999999988 599999
Q ss_pred eCcHHHHHHHHHhC---C----C----ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 145 HDSLFVLAGIKEKY---D----T----VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 145 D~S~~ML~~Ar~k~---~----~----v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|.|++|+++|+++- | + +++...|+|.+- +.||+|+|.-++.|+.||++.++.+.+.|||||+++|+
T Consensus 118 D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 118 DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 99999999999872 1 1 456777877774 34999999999999999999999999999999999998
Q ss_pred cCCChhHHH--------HHHhhC-c-cc-ccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 214 HPQGREALQ--------KQRKQF-P-DV-IVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 214 ~~~gr~~l~--------~~~~~~-~-~~-si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+. .|..+. +.-..+ + .. .-..|++++|+..+++.+++++..+..
T Consensus 195 ti-nrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 195 TI-NRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred eh-hhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 53 232221 111111 1 11 235699999999999999998765543
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=1.2e-17 Score=130.48 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=75.2
Q ss_pred EE-EEcCchHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecc-cCcC
Q 023971 120 VL-VSISSEEFVDRVVESS---P-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYF-LPAM 189 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~---~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~ 189 (274)
|| +|||||..+..+.+.. + .+++|||+|++||+.|+++. .+++|+++|++++|+.+++||+|++.. ++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79 9999999999998874 4 79999999999999999887 578999999999999999999999954 3776
Q ss_pred CC--CHHHHHHHHHHhcCCCC
Q 023971 190 PF--PLDQVFETLANRCSPGA 208 (274)
Q Consensus 190 ~~--d~~~al~el~RvLKPGG 208 (274)
.. +.++++++++++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 54 45689999999999998
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=142.69 Aligned_cols=155 Identities=10% Similarity=0.199 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.-.+++++.+.+....+|. +|||+|..+..|+++-| +.|+|+|-|++||++|+++.|+++|.+||+.+.- .+.++|+
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 3567899999999999999 99999999999999988 9999999999999999999999999999998875 4689999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh--H---HHHHH------hhCcc--cccccCCCHHHHHHHHH
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE--A---LQKQR------KQFPD--VIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~--~---l~~~~------~~~~~--~si~~fps~~eL~~ll~ 247 (274)
+++|.++||++|.-+.|..+.-.|.|||.|.+.-|.+.. + +.+.. ..+.. ..-..+|+.....+++.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999996443311 1 11111 11111 12345788888888888
Q ss_pred hCCCcEeEEEe
Q 023971 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
..+-++..|+.
T Consensus 176 ~~~~rvDiW~T 186 (257)
T COG4106 176 PLACRVDIWHT 186 (257)
T ss_pred cccceeeeeee
Confidence 88887777653
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=8.2e-16 Score=132.87 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.+..+++.+.+.++.+|| ||||||.++..++++.+ .+|+|+|+|++|++.|+++. ++++++++|+. .++ .+
T Consensus 19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-Cc
Confidence 344556778888999999 99999999999988776 79999999999999998752 46889999975 333 46
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+||+|++..... ...+.++++.++|||||++++.... ..+.+++.+++++.||+.+.
T Consensus 97 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~-------------------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 97 KADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL-------------------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec-------------------HhhHHHHHHHHHHCCCCcce
Confidence 899999875443 4578899999999999999986421 12235666788888885443
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.71 E-value=1e-16 Score=141.11 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeec-cCCC--CCCCCccEEEecc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGEL-IYVP--DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDa-e~LP--f~~~sFD~V~~~f 185 (274)
++.+|| +|||||.++..+++..+ .+|+|||+|++|++.|+++. ++++++++|+ +.++ +++++||+|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999 99999999999988766 78999999999999998753 5789999999 8887 7789999999987
Q ss_pred cCcCCC--------CHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 186 LPAMPF--------PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~--------d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
...|.. ..+.++++++|+|||||+|+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 654432 146899999999999999999754
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.70 E-value=2.7e-16 Score=124.55 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC-CC
Q 023971 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY-VP 172 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~-LP 172 (274)
.++....+++.+.+.++.+|| +|||+|.++..+++..+ .+|+|+|+|+.|++.|+++ .++++++.+|+.+ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 345667788888888889999 99999999999988865 7999999999999999865 3568889999876 44
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...++||+|++..... ...+++++++|+|||||+|++.
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 4457999999875443 3468999999999999999985
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.70 E-value=1.5e-16 Score=140.76 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+.+.. +.++.+|| ||||||.++..|.+..+ .+++|||+|++|++.|+++.+++.+.++|+.+ |+.+++||+|+
T Consensus 34 ~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 34 FARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred HHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEE
Confidence 3344433 45678999 99999999999988744 79999999999999999999999999999998 99999999999
Q ss_pred ecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 183 LYFLPAMPF--PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++.+++++. +..+++++++|++ ++.++|...
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 998887763 4678999999998 678888654
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.70 E-value=1.9e-16 Score=146.38 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCC
Q 023971 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf 173 (274)
...+++.+++.+++++|++|| ||||-|.++.+++++...+|+||.+|++..+.|+++.. .+++..+|..+++.
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 334678889999999999999 99999999999999833699999999999999987632 47889999988765
Q ss_pred CCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChh--HH-------HHHHhh-CcccccccCCCHHH
Q 023971 174 KWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGRE--AL-------QKQRKQ-FPDVIVSDLPDQMT 241 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~--~l-------~~~~~~-~~~~si~~fps~~e 241 (274)
+||.|++--.+-++ .+..+.++++.|+|||||++++....... .. .-+.++ ++ ...+|+.++
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP---gg~lps~~~ 200 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP---GGYLPSLSE 200 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST---TS---BHHH
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC---CCCCCCHHH
Confidence 99999987556555 46789999999999999999973221111 10 112222 22 246899999
Q ss_pred HHHHHHhCCCcEeEEEecCCe
Q 023971 242 LQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d~~~~ 262 (274)
+...+++.||++..+.+....
T Consensus 201 ~~~~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 201 ILRAAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHHHHHHTT-EEEEEEE-HHH
T ss_pred HHHHHhcCCEEEEEEEEcCcC
Confidence 999999999999888775443
No 54
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.69 E-value=1.6e-16 Score=145.67 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=87.7
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchH----HHHHHHHhCC------CcEEEEeCcHHHHHHHHHhC----------------
Q 023971 106 DQIISAGEIDESSKVL-VSISSEE----FVDRVVESSP------SLLLVVHDSLFVLAGIKEKY---------------- 158 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~----l~~~L~~~~~------~~V~gVD~S~~ML~~Ar~k~---------------- 158 (274)
..+++.....++-+|+ +|||||. ++..|++..+ .+|+|+|+|++||++|+++.
T Consensus 89 p~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~ 168 (264)
T smart00138 89 PLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLAR 168 (264)
T ss_pred HHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhh
Confidence 3344443445567999 9999996 4444544321 58999999999999999863
Q ss_pred ----------------CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 159 ----------------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 159 ----------------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..+.|.++|+.+.|+.+++||+|+|..+++++. +.++++++++++|||||+|+|.+..
T Consensus 169 yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 169 YFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred hEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 147899999999988889999999988888775 4458999999999999999998654
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=1.7e-16 Score=155.34 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=112.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CCCceEEEeecc--CCCCCCCCc
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YDTVKCWQGELI--YVPDKWGPL 178 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae--~LPf~~~sF 178 (274)
+..+++.+...++.+|| ||||+|.++..|++.+ .+|+|||+|++|++.++++ .+++.++++|++ .+|+.+++|
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 45666667766788999 9999999999998876 4999999999999998764 357899999996 578888999
Q ss_pred cEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023971 179 DVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
|+|++.+.++++.+ +.++++++.|+|||||++++.+...... ..... ......+....++.+++.++||...
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR---KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc---cCCCCeecChHHHHHHHHHheeccC
Confidence 99999999988876 5689999999999999999965321110 00000 1122334557899999999999754
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=4.1e-16 Score=144.00 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=102.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.++.+|| +|||+|.++..|++.+ .+|+|+|+|++|++.++++. -++++.++|+...++ +++||+|++.+++++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 3445999 9999999999998876 59999999999999988653 257888899888766 789999999988887
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEEecC
Q 023971 190 PF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 190 ~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
+. +...+++++.|+|||||+++|....... .+.. .....+.+.+||.+.++ +|+++.+.+..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~-------~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTE-------DYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccc-------cCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 64 5678999999999999997663222111 0010 11134567899999987 49999886543
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=9e-16 Score=133.52 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=81.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEecccCc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
++.+|| ||||||.++..++...+ ++|+|||.|++|++.++++ .++++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 478999 99999999998877766 7899999999999888754 346899999999985 368999999875
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 189 MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
..+.+..++++.++|||||++++.+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34677899999999999999999753
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=8e-18 Score=130.39 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=62.0
Q ss_pred E-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-----CceEEEeeccCCCCC--CCCccEEEecccCcCCC
Q 023971 121 L-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-----TVKCWQGELIYVPDK--WGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDae~LPf~--~~sFD~V~~~f~l~~~~ 191 (274)
| ||||||.++..+++..+ .+++|+|+|+.||++|++++. +..++..+..++... .++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7 99999999999999866 899999999999988887743 234455554444322 25999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEE
Q 023971 192 PLDQVFETLANRCSPGARV 210 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrl 210 (274)
+++++++.++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 59
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.67 E-value=8.6e-16 Score=135.25 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=100.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEeccc
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
..++.+|| ||||||.++..|++.+. +|+|+|+|++|++.|+++.. ++.+.++|+ +..+++||+|++...
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcch
Confidence 46778999 99999999999988764 79999999999999998742 478888884 455789999999887
Q ss_pred CcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhH--HHHHHhhCcc---cccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 187 PAMPF--PLDQVFETLANRCSPGARVVISHPQGREA--LQKQRKQFPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 187 l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~--l~~~~~~~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+++.+ +..++++++.+.+++|+.+. ..+..... ...+...+.. .....+.+.+++.++++++||++......
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 75544 44578889988775444333 22222111 1111111211 11234668899999999999998887663
Q ss_pred C
Q 023971 260 S 260 (274)
Q Consensus 260 ~ 260 (274)
.
T Consensus 216 ~ 216 (230)
T PRK07580 216 S 216 (230)
T ss_pred c
Confidence 3
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.67 E-value=5.4e-16 Score=135.47 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC---CCCCCccEEEecc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP---DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP---f~~~sFD~V~~~f 185 (274)
...+|| ||||+|.++..++++.| ..|+|||+|++|++.|+++ .++++++++|+.+++ +.++++|.|+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 446899 99999999999998877 8999999999999999875 357899999998865 4567999999998
Q ss_pred cCcCCCCH--------HHHHHHHHHhcCCCCEEEEEcC
Q 023971 186 LPAMPFPL--------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~d~--------~~al~el~RvLKPGGrlvIs~~ 215 (274)
...|.... ++.+++++|+|||||+|++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 65554322 5789999999999999998654
No 61
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=158.59 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=89.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC--CCCCCccEEEe
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP--DKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP--f~~~sFD~V~~ 183 (274)
....++.+|| ||||||.++..+++..+ .+|+|+|+|+.|++.|+++.+ ++.++++|+.++| +++++||+|++
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 3445688999 99999999999988776 899999999999999998642 4678899999998 88899999999
Q ss_pred cccCcCC-------------CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 184 YFLPAMP-------------FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 184 ~f~l~~~-------------~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++.+|++ .++.+++++++|+|||||+++|.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9877753 3568999999999999999999753
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=2.4e-15 Score=129.13 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=98.4
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEeccc
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+...++.+|| +|||||.++..+++.++ +|+|+|+|++|++.|+++. .++++.++|+.+.+ .++||+|+++-.
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCC
Confidence 3445667999 99999999999988876 8999999999999999863 25788899987765 359999999854
Q ss_pred CcCCCC---------------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHH
Q 023971 187 PAMPFP---------------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKA 245 (274)
Q Consensus 187 l~~~~d---------------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~l 245 (274)
++...+ .++.++++.|+|||||++++.+.... ...++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-------------------~~~~~~~~ 152 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-------------------GEPDTFDK 152 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------ChHHHHHH
Confidence 433322 35679999999999999999754321 13677889
Q ss_pred HHhCCCcEeEEEecC
Q 023971 246 AGNHCFQIDNFVDES 260 (274)
Q Consensus 246 l~~aGF~~v~~~d~~ 260 (274)
+++.||+.....+..
T Consensus 153 l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 153 LDERGFRYEIVAERG 167 (179)
T ss_pred HHhCCCeEEEEEEee
Confidence 999999876655544
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.65 E-value=2.2e-15 Score=136.56 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=96.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
+.++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++.. ++. +...++..+.+||+|+++....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 45788999 99999999888777665579999999999999998743 221 1112333334899999885432
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023971 191 FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
.....++++.++|||||+++++.... ...+++.+.+++.||++......++-..++++|
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~-------------------~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILE-------------------EQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcH-------------------hhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 24678899999999999999974321 124678889999999988887776655555554
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.65 E-value=5.6e-15 Score=129.20 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=87.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh---C---CCceEEEeeccCC-CCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK---Y---DTVKCWQGELIYV-PDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k---~---~~v~~~~gDae~L-Pf~ 174 (274)
+.-.+..+.+.++++|| +|||||.++..+++. ++ ++|+++|.+++|++.|+++ . .++.++.+|+.+. +..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 34446778899999999 999999999888765 44 7999999999999999875 2 3578899999774 444
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.||+|++... ..++.++++++.++|||||++++.
T Consensus 109 ~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 578999998643 347789999999999999999984
No 65
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=3.6e-16 Score=139.10 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=108.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCce-EEEeeccCCC-CCCCCccEEEecc
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVK-CWQGELIYVP-DKWGPLDVVFLYF 185 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~-~~~gDae~LP-f~~~sFD~V~~~f 185 (274)
.....|| ||||||....++-- .| .+||.+|+++.|-+.|.++ ++++. |+.|++|+|| .+|+|+|+|++.+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3334689 99999999888732 24 7999999999999887654 55666 9999999999 8999999999999
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCCh-hHHHHHHhhCccc--c--ccc-CCCHHHHHHHHHhCCCcEeEEEe
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS-HPQGR-EALQKQRKQFPDV--I--VSD-LPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr-~~l~~~~~~~~~~--s--i~~-fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++--+.|+.++|+|+.|+|||||++++. |..+. +.++.+-+++.+. + ... --+ -+.-+.++.+-|..++-+.
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~lt-rd~~e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLT-RDTGELLEDAEFSIDSCKR 232 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEe-hhHHHHhhhcccccchhhc
Confidence 9999999999999999999999999874 43332 2344443333221 0 000 112 3555678888887766544
Q ss_pred --cCCeEEEE
Q 023971 259 --ESGFYLVV 266 (274)
Q Consensus 259 --~~~~yl~v 266 (274)
-...|.+|
T Consensus 233 ~~~~ttw~~V 242 (252)
T KOG4300|consen 233 FNFGTTWVIV 242 (252)
T ss_pred ccCCceEEEE
Confidence 23335544
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=1.8e-15 Score=133.33 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=87.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~ 174 (274)
....+++.+.+.++++|| ||||||.++..+++.. + ++|+|+|++++|++.|+++. . +++++.+|+.+.+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 466778888889999999 9999999998888763 2 79999999999999998753 2 378999999886656
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++||+|++.....++ .+++.++|||||+|++.
T Consensus 140 ~~~fD~Ii~~~~~~~~------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAASTI------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcchh------hHHHHHhcCcCcEEEEE
Confidence 7899999999776554 25788999999999985
No 67
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.63 E-value=3.7e-15 Score=131.28 Aligned_cols=141 Identities=18% Similarity=0.081 Sum_probs=112.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-CC-CCCCCccEEEecccCcC
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-VP-DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-LP-f~~~sFD~V~~~f~l~~ 189 (274)
.+++|+||| +|||.|.+...|.+....++.|||++++.+..+.+|. +..+|+|+++ |+ |+|++||.|+++-+++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 457899999 9999999999998864479999999999998887764 6679999987 54 89999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC--------------cccccccCCCHHHHHHHHHhCCCcEeE
Q 023971 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF--------------PDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~--------------~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+.+|+++|+||.|| |.+.+|+-|.-..|-.+++-.. -+.-..++.|..++++++++.|+++..
T Consensus 88 ~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 88 VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 99999999999777 7788888665444433332111 111234588999999999999998876
Q ss_pred EEe
Q 023971 256 FVD 258 (274)
Q Consensus 256 ~~d 258 (274)
-.-
T Consensus 165 ~~~ 167 (193)
T PF07021_consen 165 RVF 167 (193)
T ss_pred EEE
Confidence 443
No 68
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=4.9e-15 Score=137.47 Aligned_cols=188 Identities=14% Similarity=0.061 Sum_probs=135.2
Q ss_pred CCCccccccccccccccccccccCC--ccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCc
Q 023971 71 DEGTVSVVNFEDFTEIDWSFLDSDE--LNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 71 ~~~~~~~~~f~~~~~~~Wd~~~~~~--~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S 147 (274)
+-++..|..|-|---..|-.+-... +.+.....+++.+++.+++++|.+|| ||||-|.++.+++++...+|+||++|
T Consensus 25 Dl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS 104 (283)
T COG2230 25 DLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS 104 (283)
T ss_pred hcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCC
Confidence 3344556666653333222332222 45556667889999999999999999 99999999999999854699999999
Q ss_pred HHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEE---cCC
Q 023971 148 LFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVIS---HPQ 216 (274)
Q Consensus 148 ~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs---~~~ 216 (274)
++|++.++++. + +++++..|..+++ +.||.|++-=.+.++.. .+..|+.+.++|+|||++++- ++.
T Consensus 105 ~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 105 EEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99999999863 2 5677777766554 45999998855555443 789999999999999999873 222
Q ss_pred Ch--hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023971 217 GR--EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 217 gr--~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.+ .....+.++.. -...+|+..++.+..+++||.+..++.....|
T Consensus 182 ~~~~~~~~~i~~yiF--PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hY 228 (283)
T COG2230 182 QEFRRFPDFIDKYIF--PGGELPSISEILELASEAGFVVLDVESLRPHY 228 (283)
T ss_pred cccccchHHHHHhCC--CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHH
Confidence 11 12222233321 12568999999999999999988776665554
No 69
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.63 E-value=1.3e-14 Score=135.20 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHh----CCC--ceEEEeeccC-CCCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEK----YDT--VKCWQGELIY-VPDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k----~~~--v~~~~gDae~-LPf~ 174 (274)
...+.+.+ .++.+|| +|||||..+..|++.. +.+|+|||+|++||+.|+++ +|+ +.+++||..+ +++.
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 33444333 4667999 9999999999998874 36899999999999999876 355 4568999876 4443
Q ss_pred CC----CccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WG----PLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~----sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.. ...++++...++|.. +..+.|++++++|+|||+|+|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 32 233444446677764 3446799999999999999984
No 70
>PRK14967 putative methyltransferase; Provisional
Probab=99.63 E-value=2.1e-14 Score=127.76 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=110.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCc
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sF 178 (274)
.+.+.+....+.++++|| +|||+|.++..+++.+..+|+|+|+|+.|++.|+++.. ++.++++|+.+. +.+++|
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~f 102 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPF 102 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCe
Confidence 344556666788889999 99999999998877643699999999999999987532 467888998763 456899
Q ss_pred cEEEecc--cCcCCC-------------------CHHHHHHHHHHhcCCCCEEEEEcCCC---hhHHHHHHhhCccc---
Q 023971 179 DVVFLYF--LPAMPF-------------------PLDQVFETLANRCSPGARVVISHPQG---REALQKQRKQFPDV--- 231 (274)
Q Consensus 179 D~V~~~f--~l~~~~-------------------d~~~al~el~RvLKPGGrlvIs~~~g---r~~l~~~~~~~~~~--- 231 (274)
|+|+++- ...... ..+.+++++.++|||||++++.+... ...++.+......+
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 9999983 222110 14567889999999999999854321 23333343321111
Q ss_pred --ccccCCCHHH-HHHHHHhCCCcEeEEEecCCeEEEEEEec
Q 023971 232 --IVSDLPDQMT-LQKAAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 232 --si~~fps~~e-L~~ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
....|..... ...++++.||-.. -+.+++..+.|.+|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 183 ASQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred EeeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 1123443222 3378899999744 334455556666654
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=4.2e-15 Score=131.91 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~ 174 (274)
.....+++.+.+.++++|| ||||||.++..+++. ++ ++|+++|++++|++.|+++. .++++++||+.+.+..
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 3567788888999999999 999999999988876 34 79999999999999999863 4689999999887777
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++||+|++......+ ..++.+.|||||+|++..
T Consensus 143 ~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7999999988665443 346677899999999953
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.61 E-value=5.6e-15 Score=131.15 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=86.1
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------
Q 023971 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------- 172 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------- 172 (274)
+.++.+..+ +.++.+|| ||||||.++..++++. + +.|+|||+++ | ...++++++++|+++.+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHH
Confidence 344445555 57889999 9999999999998874 4 7999999998 4 24578999999999864
Q ss_pred CCCCCccEEEecccCcCCCCH-----------HHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 173 DKWGPLDVVFLYFLPAMPFPL-----------DQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~-----------~~al~el~RvLKPGGrlvIs~~~g 217 (274)
+.+++||+|+++..+++..++ +.+++++.|+|||||+|+|.+..+
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 678999999998777665432 568999999999999999965543
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.61 E-value=7.3e-15 Score=129.98 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=87.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
....+++.+.+.++.+|| ||||||.++..|++.. + ++|+|||.+++|++.|+++. .+++++++|+.+.+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 456777888899999999 9999999999998874 3 57999999999999999763 46899999998876566
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++||+|++......+ ..++.+.|||||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 899999988655443 45678889999999985
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.60 E-value=4.6e-14 Score=125.64 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
..++.+++.+. ..+.+|| +|||+|.++..+++..+ ..|+|+|+|+.|++.|+++. ++++++++|+.+ ++.+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence 35555665554 3446899 99999999999988766 79999999999999998752 358899999977 5567
Q ss_pred CCccEEEecccCcC------CC--------------------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc
Q 023971 176 GPLDVVFLYFLPAM------PF--------------------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP 229 (274)
Q Consensus 176 ~sFD~V~~~f~l~~------~~--------------------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~ 229 (274)
++||+|+++.-+.. .. ....+++++.++|||||++++.+..
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------- 219 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------- 219 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-------------
Confidence 89999999732111 00 1236788999999999999996421
Q ss_pred ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 230 DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 230 ~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
...+++.++++++||+.+.+..
T Consensus 220 -------~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 220 -------DQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred -------cHHHHHHHHHHhCCCCceEEEe
Confidence 1236788899999997766544
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.58 E-value=2.5e-14 Score=134.63 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.-.+.++...++.++++|| +|||||.++..++..+ .+|+|+|++++|++.|+++. +++.+.++|+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 3445566667888999999 9999999987766555 59999999999999998763 457889999999999889
Q ss_pred CccEEEec--ccCcCCC------C-HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 177 PLDVVFLY--FLPAMPF------P-LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~--f~l~~~~------d-~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||+|+++ |+.+... + ..++++++.|+|||||++++..+
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99999997 4433211 1 47899999999999999998654
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=6.4e-14 Score=119.11 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CC--ceEEEeeccCCCCCCCCccEEEecc
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DT--VKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~--v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
..++.+|| +|||+|.++..+++++ .+|+|+|.|++|++.++++. .+ +.++++|+.+ ++.+++||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 36778999 9999999999998875 69999999999999998763 23 7888999866 34556899999873
Q ss_pred cCcC---------------------CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHH
Q 023971 186 LPAM---------------------PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQK 244 (274)
Q Consensus 186 ~l~~---------------------~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ 244 (274)
.+.. ....+.+++++.++|||||++++..+.. -..+++.+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------------------~~~~~l~~ 159 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------------------TGEDEVLE 159 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-------------------CCHHHHHH
Confidence 2211 1114568999999999999998864311 12467889
Q ss_pred HHHhCCCcEeEEE
Q 023971 245 AAGNHCFQIDNFV 257 (274)
Q Consensus 245 ll~~aGF~~v~~~ 257 (274)
+++++||++....
T Consensus 160 ~~~~~g~~~~~~~ 172 (188)
T PRK14968 160 YLEKLGFEAEVVA 172 (188)
T ss_pred HHHHCCCeeeeee
Confidence 9999999766543
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.57 E-value=6.4e-14 Score=122.06 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCCCCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf~~~ 176 (274)
...+++.+.+.++++|| +|||||.++..+++..+ ++|+|+|+|++|++.|+++. .+++++.+|+.+ ++....
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 33467778888999999 99999999998877665 79999999999999998753 468899999865 333334
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+|.|++.. ..+.++++++++++|||||++++...
T Consensus 109 ~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 568876642 23568999999999999999999754
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.56 E-value=3e-14 Score=137.57 Aligned_cols=108 Identities=6% Similarity=0.097 Sum_probs=90.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC--CCCCCC
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV--PDKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L--Pf~~~s 177 (274)
.+++......+..+| ||||+|.++..++++.| ..++|||+++.|++.|.++ .+++.++++|+..+ ++++++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 456566666677999 99999999999999887 8999999999999998865 45799999999875 577899
Q ss_pred ccEEEecccCcCCCCH------HHHHHHHHHhcCCCCEEEEEc
Q 023971 178 LDVVFLYFLPAMPFPL------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~------~~al~el~RvLKPGGrlvIs~ 214 (274)
+|.|+++|..-|...+ ...+++++|+|||||.+.+.+
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998765454332 579999999999999999953
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.55 E-value=7.4e-14 Score=123.51 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=107.5
Q ss_pred HHHHHH-hCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCcc
Q 023971 105 IDQIIS-AGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 105 ~~~ll~-~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD 179 (274)
.+.++. .+.-..-.++| +|||.|.++..|+.++ .+++++|+|+.-|+.||++. ++++|+++|+.+.. +++.||
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FD 108 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFD 108 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EE
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCee
Confidence 344454 45666668999 9999999999999887 59999999999999999985 56999999987753 579999
Q ss_pred EEEecccCcCCC---CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023971 180 VVFLYFLPAMPF---PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 180 ~V~~~f~l~~~~---d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+|+++-.+.++. +++.++..+.+.|+|||.||+.|.. ++..+.|. +.| ..+++..++.+. |..+.-
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-----d~~c~~wg----h~~-ga~tv~~~~~~~-~~~~~~ 177 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-----DANCRRWG----HAA-GAETVLEMLQEH-LTEVER 177 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE------HHHHHHTT-----S---HHHHHHHHHHH-SEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CCcccccC----ccc-chHHHHHHHHHH-hhheeE
Confidence 999996666654 4567899999999999999998763 22223343 222 567888887775 765554
Q ss_pred Ee------cCCeEEEEEEecCC
Q 023971 257 VD------ESGFYLVVLKFSKS 272 (274)
Q Consensus 257 ~d------~~~~yl~v~~~~~~ 272 (274)
+. +++..++-+++|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 178 VECRGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp EEEE-SSTTSEEEEEEEE--SS
T ss_pred EEEcCCCCCCceEeeeecCCcC
Confidence 43 56667777777754
No 80
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=6e-14 Score=131.19 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=116.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH--Hh-CC-C--ceEEEeeccCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK--EK-YD-T--VKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar--~k-~~-~--v~~~~gDae~LPf~~~ 176 (274)
+.+++...+.--.|.+|| ||||.|....+++++++..|+|+|++..-+.+.+ ++ .+ + +.++---+|+||. .+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 345666666555788999 9999999999999988889999999999877643 33 22 2 2333357899998 89
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHHH-HhhCccc-ccccCCCHHHHHHHHHhCCCc
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQKQ-RKQFPDV-IVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~~-~~~~~~~-si~~fps~~eL~~ll~~aGF~ 252 (274)
.||.|+|.-++-|..+|-.+|+++...|||||.+++-+.. |.....-. ...|..+ -+--+|+...|.++++++||+
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence 9999999877777789999999999999999999984321 11100000 1123222 233479999999999999999
Q ss_pred EeEEEecC
Q 023971 253 IDNFVDES 260 (274)
Q Consensus 253 ~v~~~d~~ 260 (274)
.++..+..
T Consensus 262 ~v~~v~~~ 269 (315)
T PF08003_consen 262 DVRCVDVS 269 (315)
T ss_pred eEEEecCc
Confidence 99988765
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=123.43 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEee
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQGE 167 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~gD 167 (274)
.+.+..+.+.++.||| +|||+|.-+..|+++| ..|+|||+|+..++.+.++ ..+++++++|
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D 105 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGD 105 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECc
Confidence 3344444556778999 9999999999999887 4999999999999987532 2357899999
Q ss_pred ccCCCCCC-CCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEE-EcCCChhHHHHHHhhCcccccccCCCHHHHH
Q 023971 168 LIYVPDKW-GPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVI-SHPQGREALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 168 ae~LPf~~-~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvI-s~~~gr~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
+.+++..+ ..||.|+-...+++++ ..++.++.+.++|||||++++ ++...... . . ..-...+.+||.
T Consensus 106 ~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---~----~--gPp~~~~~~el~ 176 (218)
T PRK13255 106 FFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---L----A--GPPFSVSDEEVE 176 (218)
T ss_pred ccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---C----C--CCCCCCCHHHHH
Confidence 99986543 6899999664444432 456899999999999997444 43322110 0 0 011246789999
Q ss_pred HHHHhCCCcEeEEEec
Q 023971 244 KAAGNHCFQIDNFVDE 259 (274)
Q Consensus 244 ~ll~~aGF~~v~~~d~ 259 (274)
+++.. +|++..++..
T Consensus 177 ~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 177 ALYAG-CFEIELLERQ 191 (218)
T ss_pred HHhcC-CceEEEeeec
Confidence 88863 3776666553
No 82
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.53 E-value=7.3e-14 Score=124.71 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=100.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEe
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQG 166 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~g 166 (274)
+...++.+.+.++.||| +|||+|.-+..|+++|- .|+|||+|+.+++.|.++ ..+++++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 33444444445778999 99999999999999884 999999999999986442 235889999
Q ss_pred eccCCCCC-CCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccccCCCHHHH
Q 023971 167 ELIYVPDK-WGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 167 Dae~LPf~-~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
|+.+++.. .+.||.|+-...+++++ ..++.++.+.+.|||||++++. ....... .. ......+.+||
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~-------~~--gpp~~~~~~eL 172 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE-------MA--GPPFSVSPAEV 172 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC-------CC--CcCCCCCHHHH
Confidence 99998753 46799998764444432 3457899999999999986553 2111000 00 01124678899
Q ss_pred HHHHHhCCCcEeEEEe
Q 023971 243 QKAAGNHCFQIDNFVD 258 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d 258 (274)
.+++.. +|++..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 888764 577666554
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=1.6e-13 Score=127.13 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEeccc
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
..++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++.. .+.+..+|. .+..+++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 34678999 99999999988877665799999999999999998632 245555653 3344679999999865
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.. ...+++.++.++|||||+++++..... ..+++.+.+++. |+++.....
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi~~~-------------------~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGILET-------------------QAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeCcHh-------------------HHHHHHHHHHcc-CceeeEecc
Confidence 32 346889999999999999999743211 025667777766 887766544
No 84
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.52 E-value=4.1e-13 Score=129.48 Aligned_cols=127 Identities=8% Similarity=0.059 Sum_probs=94.3
Q ss_pred ccccccccCCccchhHHH-HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----
Q 023971 86 IDWSFLDSDELNFKEHIQ-RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---- 158 (274)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~-w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---- 158 (274)
..|...++..-|+..... -.+-+++.+....+.+|| +|||||.++..+++++| .+|++||.|+.|++.|+++.
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~ 276 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM 276 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456766666555432111 234566666655567999 99999999999999887 89999999999999999763
Q ss_pred ----CCceEEEeeccCCCCCCCCccEEEecccCcCCC-----CHHHHHHHHHHhcCCCCEEEEE
Q 023971 159 ----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF-----PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 159 ----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~-----d~~~al~el~RvLKPGGrlvIs 213 (274)
.+++++.+|+.+- +.+++||+|+|+--+|... ...+.++++.|+|||||+|+|.
T Consensus 277 ~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 277 PEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2468888887542 2346899999985444321 2347889999999999999996
No 85
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=2.9e-13 Score=121.66 Aligned_cols=170 Identities=18% Similarity=0.081 Sum_probs=116.9
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCC--CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023971 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDE--SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~--~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
.-|+|..+++|+.......--++ -..+.+..+.+++ ..-|| ||||||--+..|...+ ...+|||+|+.||++|
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~e---m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAE---MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQA 88 (270)
T ss_pred eeechhhhhhccccceeeeehHH---HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHH
Confidence 67888888888875555433222 2345555555555 66788 9999998888887777 5899999999999999
Q ss_pred HHhCCCceEEEeec-cCCCCCCCCccEEEecccCcCCC-------CHH----HHHHHHHHhcCCCCEEEEEc-CCChhHH
Q 023971 155 KEKYDTVKCWQGEL-IYVPDKWGPLDVVFLYFLPAMPF-------PLD----QVFETLANRCSPGARVVISH-PQGREAL 221 (274)
Q Consensus 155 r~k~~~v~~~~gDa-e~LPf~~~sFD~V~~~f~l~~~~-------d~~----~al~el~RvLKPGGrlvIs~-~~gr~~l 221 (274)
.++.-.-.++.+|. +-|||..++||.|++-.+++|.- +|. ..|..++.+|++|+|.|+.- |...
T Consensus 89 ~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~--- 165 (270)
T KOG1541|consen 89 VERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE--- 165 (270)
T ss_pred HHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch---
Confidence 97432245566665 45999999999999776666632 232 46778999999999999852 2111
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec-----CCeEEEEEEe
Q 023971 222 QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE-----SGFYLVVLKF 269 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~-----~~~yl~v~~~ 269 (274)
+ ..+.+.+...++||.--..+|. +.-|++|+..
T Consensus 166 ~---------------q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL~~ 203 (270)
T KOG1541|consen 166 A---------------QIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVLMT 203 (270)
T ss_pred H---------------HHHHHHHHHHhhccCCceeeecccccccceeEEEEec
Confidence 1 1245666777788854344443 3446667643
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.51 E-value=1e-12 Score=121.82 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=96.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY-- 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~-- 184 (274)
.++.+|| +|||||.++..+++..+ .+|+|+|+|++|++.|+++. .+++++++|+.+ ++.+++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3457999 99999999999998876 79999999999999999763 248899999854 2345689999997
Q ss_pred ccCcC---------CCC--------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023971 185 FLPAM---------PFP--------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 185 f~l~~---------~~d--------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
+.... ..+ .+..++++.++|||||++++.... +.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---------------------~~~~ 257 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---------------------SMEA 257 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------CHHH
Confidence 22110 001 246688899999999999986431 1246
Q ss_pred HHHHHHhCCCcEeEEEecCCeEEEE
Q 023971 242 LQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
+.+++.+.||.-..+....+...++
T Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 258 LEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred HHHHHHhCCCceeeecCCCcEEEEE
Confidence 7777888899877776666654443
No 87
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.51 E-value=7.5e-15 Score=132.55 Aligned_cols=176 Identities=11% Similarity=0.017 Sum_probs=126.0
Q ss_pred ccccccccccccccc-ccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023971 77 VVNFEDFTEIDWSFL-DSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~-~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
+...+|..+.+.|.. ...... ...+.++++|..++..+-.++| +|||||-++..|.... .+++|||+|..||++|
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y--~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA 163 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGY--SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKA 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHH
Confidence 334444455547632 222212 3445788888888887778999 9999999999997765 5999999999999999
Q ss_pred HHhCCCceEEEeeccC-CC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccc
Q 023971 155 KEKYDTVKCWQGELIY-VP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVI 232 (274)
Q Consensus 155 r~k~~~v~~~~gDae~-LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~s 232 (274)
.+|----...++|+.. ++ ..++.||+|++.-++-..-+++.++.-....|+|||.|+++-.....+ ..+ . ...+
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~-~~f--~-l~ps 239 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD-GGF--V-LGPS 239 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC-CCe--e-cchh
Confidence 9995433445677664 33 567899999999888888899999999999999999999974332221 000 0 0001
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 233 VSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
...-.+...+..+++..||+++..++.
T Consensus 240 ~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 240 QRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhccchHHHHHHHHhcCceEEEeecc
Confidence 112245678899999999999888763
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=5.8e-13 Score=120.63 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.++.++......++.+|| +|||+|.++..++...+ .+|+|+|+|+.|++.|+++. .++.++++|+.+ ++.++
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~ 174 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGG 174 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCC
Confidence 444555455566778999 99999999999988876 89999999999999999864 368999999854 23368
Q ss_pred CccEEEecc--cCcC------------------------CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc
Q 023971 177 PLDVVFLYF--LPAM------------------------PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD 230 (274)
Q Consensus 177 sFD~V~~~f--~l~~------------------------~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~ 230 (274)
+||+|+++- .... ....+++++++.++|||||++++....
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-------------- 240 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-------------- 240 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--------------
Confidence 999999862 1110 011356788888999999999995421
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeEE
Q 023971 231 VIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
...+++.+++++.||..+..
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEE
Confidence 11356888889999975554
No 89
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=3.7e-13 Score=131.12 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=85.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC--CCCCCc
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP--DKWGPL 178 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP--f~~~sF 178 (274)
.++..+++.+|++|| +|||||..+..+++..+ ++|+|+|.|+.|++.++++.. +++++++|+.+++ +.+++|
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 344456788999999 99999999999988765 799999999999999998743 3688999998875 346789
Q ss_pred cEEEecc---c---C------cCCCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 179 DVVFLYF---L---P------AMPFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f---~---l------~~~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|.|++.. + + +|... .++++.+++++|||||++++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999541 1 1 11111 2378999999999999999865
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.50 E-value=3.2e-13 Score=118.89 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~s 177 (274)
....+++.+.+.++.+|| ||||||.++..+++.. .+|+++|.+++|++.|+++. .++++.++|+.+.....++
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 445667778888999999 9999999998887765 48999999999999999863 4688999998664334589
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
||+|++.....++ .+++.+.|||||++++...
T Consensus 145 fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 145 FDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 9999998765443 4567889999999999643
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=99.50 E-value=2.6e-13 Score=126.91 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHH--HhCC-CcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVV--ESSP-SLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~--~~~~-~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf~~~s 177 (274)
+......+.++|+ ||||.|-++..+. +..| ++++|+|.+++|++.||+.. +.++|.++|+.+++...+.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3333334778999 9999886655433 3356 79999999999999999865 2489999999987644688
Q ss_pred ccEEEecccCcCC-CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 178 LDVVFLYFLPAMP-FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 178 FD~V~~~f~l~~~-~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
||+|++...+.|. .+++++++.++++|||||.+++...
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999999444442 6999999999999999999999743
No 92
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=2.6e-13 Score=128.27 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=85.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
-...+++.+.+.++++|| ||||||.++..+++..+ +.|+|||++++|++.|+++. .++.++++|+.+.+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 445677777888999999 99999999999988643 57999999999999998752 46889999998877667
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++||+|++.++..++ ...+.++|||||++++.
T Consensus 148 ~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 899999998776554 23467789999999883
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=2.9e-12 Score=112.41 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC
Q 023971 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf 173 (274)
..+.+.-.++.+.+.++++++ ||||||.++..++..+| ++|+|+|-++++++..+++ .+++..+.||+.+.-.
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 334555668889999999999 99999999999997778 9999999999999888764 5688999999977422
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+||+||+.-+ . +.+++++.+...||||||+|+.
T Consensus 99 ~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 99 DLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEE
Confidence 2238999999966 3 4588999999999999999996
No 94
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.3e-12 Score=127.64 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=85.6
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC----CCC
Q 023971 108 IISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP----DKW 175 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP----f~~ 175 (274)
+...+++.+|++|| +|||+|..+..+++.. + ++|+|+|.++.|++.++++. .+++++++|+.+++ +..
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 34456788999999 9999999999888763 3 79999999999999998763 46889999999887 456
Q ss_pred CCccEEEec---c---cCcCCCC----------------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 176 GPLDVVFLY---F---LPAMPFP----------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 176 ~sFD~V~~~---f---~l~~~~d----------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
++||.|++. . .++.-++ ..+.+.+++++|||||+|+.++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999963 1 2222222 3578999999999999999864
No 95
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.47 E-value=1.4e-13 Score=108.93 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCC--CCCCCccEEEec--c
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVP--DKWGPLDVVFLY--F 185 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LP--f~~~sFD~V~~~--f 185 (274)
|.+|| +|||+|.++..+++.+..+++|+|+++..++.|+++.+ +++++++|+.+++ +.+++||+|+++ |
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899 99999999999988875699999999999999998743 4799999999986 788999999998 4
Q ss_pred cCcCCC------CHHHHHHHHHHhcCCCCEEEEEc
Q 023971 186 LPAMPF------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 186 ~l~~~~------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
..+... ...++++++.+.|||||++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 433211 23578999999999999999864
No 96
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.47 E-value=3e-13 Score=117.05 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred HHHHHH-hCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------
Q 023971 105 IDQIIS-AGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------- 172 (274)
Q Consensus 105 ~~~ll~-~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------- 172 (274)
+.++.+ ...+.++++|| +|||||.++..++++. + ++|+|+|+|+.| +.+++++.++|+.+.+
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHH
Confidence 334433 24668899999 9999999999888764 3 689999999976 4578899999987753
Q ss_pred CCCCCccEEEecccCc----CCCC-------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 173 DKWGPLDVVFLYFLPA----MPFP-------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~----~~~d-------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+++||+|++...++ |..+ .+.++++++++|||||+++|...
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 4567899999864321 2112 36899999999999999999533
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.46 E-value=1.9e-12 Score=123.19 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=84.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCcc
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD 179 (274)
+-+++.+......+|| +|||+|.++..++++.+ .+|+++|+|+.||+.|+++.. ..++..+|+.. ..++.||
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFD 263 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCcc
Confidence 3445555544556999 99999999999998877 799999999999999987532 34677788754 2368899
Q ss_pred EEEecccCcCC-----CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMP-----FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~-----~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+++.-+|.. ...++.++++.+.|||||+|+|.
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 99999777652 23578899999999999999884
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=121.41 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=95.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec--ccCcC
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY--FLPAM 189 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~ 189 (274)
...+.+|| +|||||.++..++++.+ .+|+|||+++.|++.|+++.++++++++|+.+++. +..||+|+++ |....
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 34557999 99999999888877653 79999999999999999999999999999998763 5789999997 44333
Q ss_pred CCC------------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCC
Q 023971 190 PFP------------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 190 ~~d------------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF 251 (274)
..+ .++.++...++|+|+|.+.+.- .++. + | +.-.+++|..++++++||
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~----~---y-----~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRP----Y---Y-----DGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-eccc----c---c-----cccCCHHHHHHHHHhcCc
Confidence 322 2445566788888999777651 1111 1 1 122457899999999999
Q ss_pred cE
Q 023971 252 QI 253 (274)
Q Consensus 252 ~~ 253 (274)
..
T Consensus 208 ~~ 209 (279)
T PHA03411 208 VT 209 (279)
T ss_pred Ee
Confidence 64
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.45 E-value=8.5e-13 Score=128.43 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=85.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----C--ceEEEeeccCCCC--CCC
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----T--VKCWQGELIYVPD--KWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~--v~~~~gDae~LPf--~~~ 176 (274)
.++..+++.+|++|| +|||+|..+..+++..+ ++|+|+|++++|++.++++.. . +.+..+|+..+++ .++
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 445556888999999 99999999999888755 799999999999999987643 1 2346788776664 568
Q ss_pred CccEEEec-----cc-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 177 PLDVVFLY-----FL-PAMPFP----------------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~-----f~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||.|++. ++ ++..++ ..++|.+++++|||||+|++++.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 89999852 33 443333 35799999999999999999643
No 100
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.1e-12 Score=128.31 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=105.8
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC-CCCCCccE
Q 023971 110 SAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP-f~~~sFD~ 180 (274)
..+++.+|.+|| +|||||..+..+++.. + ++|+|+|+|+.||+.++++. .+++++++|+.+++ +.+++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 346788999999 9999999998888763 3 79999999999999998763 35789999999887 55788999
Q ss_pred EEec-----cc-CcCCC----------------CHHHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHHhhCccccc
Q 023971 181 VFLY-----FL-PAMPF----------------PLDQVFETLANRCSPGARVVISHPQG-----REALQKQRKQFPDVIV 233 (274)
Q Consensus 181 V~~~-----f~-l~~~~----------------d~~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~~~~~~~si 233 (274)
|++. ++ ++.-+ ...++|.++++.|||||+++.++..- ...+..+-...++...
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 9953 22 22211 12567899999999999999864321 2222222222222211
Q ss_pred ccCCC-HHH--HHHHHHhCCCcEeEEEecCCeEEEEEEec
Q 023971 234 SDLPD-QMT--LQKAAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 234 ~~fps-~~e--L~~ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
..... .++ +.......||++......++||++.++|.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~dGFf~a~L~k~ 430 (431)
T PRK14903 391 IDIRDKLEEFEVEGIWDGYGFLMLPDETLTPFYVSVLRKM 430 (431)
T ss_pred ecccccccccccccccCCCcEEECcCCCCCcEEEEEEEeC
Confidence 11110 000 00011234565554445679999999975
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.44 E-value=3.7e-12 Score=116.12 Aligned_cols=131 Identities=12% Similarity=0.164 Sum_probs=96.1
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--CceEEEeeccC-CCC-CCCCccEEEec--ccC
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIY-VPD-KWGPLDVVFLY--FLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~-LPf-~~~sFD~V~~~--f~l 187 (274)
++.+|| +|||+|.++..+++..+ .+|+|+|.|+.|++.|+++.. +++++++|+.+ ++. ..+.||+|+++ |..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899 99999999999987765 689999999999999998743 36889999875 331 13679999998 332
Q ss_pred c----CC-C---------------C----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHH
Q 023971 188 A----MP-F---------------P----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 188 ~----~~-~---------------d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
. .. + | .++.++.+.+.|||||++++.+...+ .+++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~--------------------~~~v~ 225 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ--------------------APLAV 225 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch--------------------HHHHH
Confidence 1 00 0 1 23666777799999999999754321 24677
Q ss_pred HHHHhCCCcEeEEEecCCeEEEEE
Q 023971 244 KAAGNHCFQIDNFVDESGFYLVVL 267 (274)
Q Consensus 244 ~ll~~aGF~~v~~~d~~~~yl~v~ 267 (274)
++|++.||+. .+...+++|-.|.
T Consensus 226 ~~l~~~g~~~-~~~~~~~~~~~~~ 248 (251)
T TIGR03704 226 EAFARAGLIA-RVASSEELYATVV 248 (251)
T ss_pred HHHHHCCCCc-eeeEcccccceee
Confidence 8899999975 4556666676664
No 102
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=124.45 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE----EeeccCCCCC--C
Q 023971 104 RIDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW----QGELIYVPDK--W 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~----~gDae~LPf~--~ 175 (274)
|...+. ...++++++ ||||||..+..++.. +..|+|+|+|++||++|+++.+...+. ..+.+-.++. +
T Consensus 23 w~~~ia---~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 23 WFKKIA---SRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHH---hhCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 777765 345666555 999999544455444 369999999999999999887654332 3333445555 8
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvI 212 (274)
+|+|.|+++-++||+ |++++++++.|||||.| .++|
T Consensus 99 ~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 999999999999998 89999999999999988 4444
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.5e-12 Score=120.35 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCce----EEEeeccCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVK----CWQGELIYVP 172 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~----~~~gDae~LP 172 (274)
.+.+|+.+.+. ++.+|| +|||||.++.+.++.|..+|+|+|+.+.-++.|+++. .++. .-..+....+
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 45556655553 788999 9999999999998888888999999999999999863 2333 2334433333
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
. .++||+|++|- +..+ ..+...++.+.|||||+++.+- .+... .+.+.+.++++||.
T Consensus 226 ~-~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlSG-----Il~~q--------------~~~V~~a~~~~gf~ 282 (300)
T COG2264 226 E-NGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILSG-----ILEDQ--------------AESVAEAYEQAGFE 282 (300)
T ss_pred c-cCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEEe-----ehHhH--------------HHHHHHHHHhCCCe
Confidence 2 36999999984 3222 3578889999999999999972 22222 25677888899999
Q ss_pred EeEEEecCCeEEEEEEe
Q 023971 253 IDNFVDESGFYLVVLKF 269 (274)
Q Consensus 253 ~v~~~d~~~~yl~v~~~ 269 (274)
++.....++-.-++++|
T Consensus 283 v~~~~~~~eW~~i~~kr 299 (300)
T COG2264 283 VVEVLEREEWVAIVGKR 299 (300)
T ss_pred EeEEEecCCEEEEEEEc
Confidence 99887776655555554
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=4.5e-12 Score=123.48 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCC-CC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPD-KW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf-~~ 175 (274)
.++..+++.+ .++.+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++.. +++++++|+.+..+ .+
T Consensus 240 ~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 240 HLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence 3555555443 4567999 99999999999887665 799999999999999998632 58899999865432 24
Q ss_pred CCccEEEec--ccCcCC-------------------CC----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc
Q 023971 176 GPLDVVFLY--FLPAMP-------------------FP----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD 230 (274)
Q Consensus 176 ~sFD~V~~~--f~l~~~-------------------~d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~ 230 (274)
++||+|+++ +..... .| .++.++++.+.|+|||++++.....
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------- 384 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------- 384 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------
Confidence 689999997 322110 01 2355666678999999998754321
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeE-EEe
Q 023971 231 VIVSDLPDQMTLQKAAGNHCFQIDN-FVD 258 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~-~~d 258 (274)
..+++.+++++.||..++ ++|
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPD 406 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEc
Confidence 136788899999997654 445
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.43 E-value=4.8e-12 Score=116.90 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCC
Q 023971 103 QRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPD 173 (274)
Q Consensus 103 ~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf 173 (274)
.++..++..+. ..+..+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++. . +++++++|+.+ ++
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~ 178 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PL 178 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cC
Confidence 35555554432 23336999 99999999999988776 79999999999999999752 2 38899999866 34
Q ss_pred CCCCccEEEec--ccCc-----------CCC------------CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 174 KWGPLDVVFLY--FLPA-----------MPF------------PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 174 ~~~sFD~V~~~--f~l~-----------~~~------------d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.+++||+|+++ +... +.+ ..++.++++.+.|+|||.+++.+..
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 44589999997 2211 111 2456788899999999999986543
No 106
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.43 E-value=4e-13 Score=119.89 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~ 174 (274)
.-..++++.+.+++|++|| ||||||.+++.|++. ++ ++|++||..+++.+.|+++. .++.+++||+..-...
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 3567889999999999999 999999999999886 55 68999999999999999873 4789999998775546
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++||.|++.++...+ | ..+.+.||+||+||+-
T Consensus 139 ~apfD~I~v~~a~~~i--p----~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI--P----EALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchH--H----HHHHHhcCCCcEEEEE
Confidence 7899999999777433 2 3355569999999984
No 107
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=1.1e-12 Score=115.78 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEE
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
.+++.+..-++.++| +|||.|+.+.+|+++|- .|+|+|.|+..|+++++. .-+++..+.|+++..+. +.||+|
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 344455665677999 99999999999999985 999999999999876642 22488899999988874 789999
Q ss_pred EecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccccc-ccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 182 FLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIV-SDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 182 ~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si-~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++..++++.. ...+.++.|...++|||.++|....... .++.... .-+....||...+. ||+++.|.+
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~-------d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP-------DYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S-------SS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC-------CCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 9876665543 4457899999999999999883221100 1111111 12335688988877 799998876
Q ss_pred cC
Q 023971 259 ES 260 (274)
Q Consensus 259 ~~ 260 (274)
+-
T Consensus 170 ~~ 171 (192)
T PF03848_consen 170 DV 171 (192)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=3.3e-12 Score=125.09 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=82.1
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+..+.+.+|++|| +|||+|..+..+++.. . ++|+|+|+|++|++.++++. .+++++++|+..++ .+++||+
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCE
Confidence 3456778899999 9999999888887653 3 69999999999999998763 35789999999886 5679999
Q ss_pred EEec-----cc-C-cC-----CCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 181 VFLY-----FL-P-AM-----PFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~-----f~-l-~~-----~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|++- .+ + ++ ..+ ..++|.++++.|||||++++++
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9952 11 1 11 111 2368999999999999999965
No 109
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.40 E-value=7.3e-13 Score=113.46 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=80.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEE
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V 181 (274)
++.+...++.+|| +|||+|.++..+++.++ .+|+++|+++.+++.|++.. .+++++.+|+-+- ..+++||+|
T Consensus 24 ~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~I 102 (170)
T PF05175_consen 24 LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLI 102 (170)
T ss_dssp HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEE
T ss_pred HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEE
Confidence 3333333678999 99999999999999887 57999999999999998752 3378889998553 237999999
Q ss_pred EecccCcCCCC-----HHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFP-----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d-----~~~al~el~RvLKPGGrlvIs 213 (274)
+++--++...+ .++.+++..+.|||||++++.
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99954444333 578899999999999999763
No 110
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=1.5e-11 Score=120.34 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=82.4
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCc
Q 023971 108 IISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sF 178 (274)
+...+.+.++.+|| +|||+|..+..+++.. + ++|+|+|+++.|++.++++. .+++++++|+.+++. ..++|
T Consensus 242 v~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 242 VAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 34456778899999 9999999999888763 4 89999999999999998753 458899999988742 23789
Q ss_pred cEEEecc---cCc----CC-----CC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 179 DVVFLYF---LPA----MP-----FP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f---~l~----~~-----~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+|++.. +.. ++ .+ ..++++++.++|||||+|+.++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9999752 111 11 11 1357999999999999999753
No 111
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.38 E-value=3.3e-12 Score=94.62 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=80.9
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC-CCCCccEEEecccCcC-C
Q 023971 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD-KWGPLDVVFLYFLPAM-P 190 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf-~~~sFD~V~~~f~l~~-~ 190 (274)
+|| +|||+|.++..+++....+++++|.++.+++.+++. ...++++.+|+.+.+. ..++||+|+++..+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 478 999999999888773237999999999999988822 3457899999988764 5688999999988877 7
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+..+.++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
No 112
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5e-12 Score=112.85 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~s 177 (274)
-..++++.+.++++++|| ||||+|..++.|++.. ++|+.||..++..+.|+++ +.|+.+++||...=-.+.++
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 456888899999999999 9999999999998876 4999999999999999986 56799999999774446799
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||.|++..+.-.+ |+..++ -|||||+++|-
T Consensus 139 yD~I~Vtaaa~~v--P~~Ll~----QL~~gGrlv~P 168 (209)
T COG2518 139 YDRIIVTAAAPEV--PEALLD----QLKPGGRLVIP 168 (209)
T ss_pred cCEEEEeeccCCC--CHHHHH----hcccCCEEEEE
Confidence 9999998766554 234444 59999999994
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.5e-11 Score=115.38 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=93.7
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--ccC
Q 023971 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--FLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f~l 187 (274)
.+|| +|||||.++..++...+ .+|+|+|+|+.|++.|+++. .+++++++|+.+. +.+++||+|+++ +..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 6899 99999999999988876 79999999999999999763 2488999998542 235689999987 211
Q ss_pred -----------cCCC------------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHH
Q 023971 188 -----------AMPF------------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQK 244 (274)
Q Consensus 188 -----------~~~~------------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ 244 (274)
++.+ ..+++++++.++|||||++++..... ++++.+
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---------------------~~~~~~ 272 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---------------------RVHLEE 272 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---------------------HHHHHH
Confidence 1111 12467889999999999999853321 234666
Q ss_pred HHHhCCCcEeEEEecCCeEEEEEEec
Q 023971 245 AAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 245 ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
++.+.||.-... ...+.++.+++++
T Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (307)
T PRK11805 273 AYPDVPFTWLEF-ENGGDGVFLLTRE 297 (307)
T ss_pred HHhhCCCEEEEe-cCCCceEEEEEHH
Confidence 677777765444 3455556665544
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.37 E-value=5.7e-12 Score=107.49 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCccE
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+++++.+++.++++|| +|||+|.++..+++++ .+|+|||+++.|++.++++. ++++++++|+.++++.+..||.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence 45778888889999999 9999999999998875 59999999999999999885 4689999999999988888999
Q ss_pred EEecccCcCCCCHHHHHHHHHHh--cCCCCEEEEEc
Q 023971 181 VFLYFLPAMPFPLDQVFETLANR--CSPGARVVISH 214 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~Rv--LKPGGrlvIs~ 214 (274)
|+++.-++.. .+.+..+.+. +.+||.+++.+
T Consensus 81 vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCcccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 9998544432 3445544433 45888888854
No 115
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=5.7e-12 Score=114.44 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=127.5
Q ss_pred ccccccccccccC-CccchhHHHHHHHHHHhC-CCCCCC--eEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHH
Q 023971 82 DFTEIDWSFLDSD-ELNFKEHIQRIDQIISAG-EIDESS--KVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAG 153 (274)
Q Consensus 82 ~~~~~~Wd~~~~~-~~~~~~~~~w~~~ll~~~-~~~~~~--rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~ 153 (274)
.-..+.||..+-. ...-.-++.|+.+=...+ .....+ ++| ||||.|..+..|++..+ -.|.+.|+|+.-++.
T Consensus 33 ~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred cchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 3466779955443 222235666775544333 333333 799 99999999888877653 689999999999999
Q ss_pred HHHhCC------CceEEEeeccC--CCCCCCCccEEEecccCcC--CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH
Q 023971 154 IKEKYD------TVKCWQGELIY--VPDKWGPLDVVFLYFLPAM--PFPLDQVFETLANRCSPGARVVISHPQGREALQK 223 (274)
Q Consensus 154 Ar~k~~------~v~~~~gDae~--LPf~~~sFD~V~~~f~l~~--~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~ 223 (274)
.++.-. ...++..+.++ -|...+++|.|++-|++-- +..-..|+.+++++|||||.|++.+ +|+.-+.+
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD-Yg~~Dlaq 191 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD-YGRYDLAQ 191 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee-cccchHHH
Confidence 987632 12333333333 3567799999999887654 3455699999999999999999984 66777777
Q ss_pred HHhhCccc-----------ccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEecC
Q 023971 224 QRKQFPDV-----------IVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 224 ~~~~~~~~-----------si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~~~ 271 (274)
++..-..+ ....|-+.++|..++.++||..++..-+ .-++|-|++.
T Consensus 192 lRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~--~rl~vNr~k~ 248 (264)
T KOG2361|consen 192 LRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD--CRLLVNRKKQ 248 (264)
T ss_pred HhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccce--eeeeeehhcc
Confidence 76442111 2245778999999999999987654333 3455555543
No 116
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.36 E-value=7.6e-12 Score=114.63 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=82.8
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEE
Q 023971 111 AGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
.+.+.++++|| +|||+|..+..+++.. + +.|+|+|.++.|++.++++. .+++++++|+..++...++||+|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45778999999 9999999998887763 3 79999999999999998763 467899999998877677899999
Q ss_pred ec---ccC---cCCC----------------CHHHHHHHHHHhcCCCCEEEEEc
Q 023971 183 LY---FLP---AMPF----------------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~---f~l---~~~~----------------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+. .+. +.-+ ...++|+++.+.|||||+|+.++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 64 121 1111 12358999999999999999864
No 117
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.1e-11 Score=111.47 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=91.8
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CC-ceEEEeeccCCCCCCC
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DT-VKCWQGELIYVPDKWG 176 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~-v~~~~gDae~LPf~~~ 176 (274)
..++..+++.+|+||| .|+|+|.++.+|++. ++ ++|+..|.-+++++.|+++. .+ +.+..+|+.+.-+.+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 3677889999999999 999999999999974 77 99999999999999999874 33 788889998877655
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.||+||. -++||-++++.+..+|||||++++..|.
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9999995 3468999999999999999999997664
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=2.3e-11 Score=121.22 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=90.6
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--c
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--F 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f 185 (274)
++.+|| +|||||.++..++...+ .+|+|+|+|+.|++.|+++. .+++++++|+.+ ++.+++||+|+++ |
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 346899 99999999998887755 79999999999999999762 247899999754 2335689999996 2
Q ss_pred cCcCC------------------------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023971 186 LPAMP------------------------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 186 ~l~~~------------------------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
..... ...++.++++.++|||||++++..... ..+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~--------------------q~~~ 276 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK--------------------QEEA 276 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc--------------------hHHH
Confidence 22110 012345678889999999999853321 1357
Q ss_pred HHHHHHhCCCcEeE-EEecCC
Q 023971 242 LQKAAGNHCFQIDN-FVDESG 261 (274)
Q Consensus 242 L~~ll~~aGF~~v~-~~d~~~ 261 (274)
+.+++++.||..+. +.|-.+
T Consensus 277 v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 277 VTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred HHHHHHhcCCCceEEEecCCC
Confidence 78888899997554 455333
No 119
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.33 E-value=2.4e-12 Score=116.69 Aligned_cols=142 Identities=10% Similarity=0.090 Sum_probs=117.3
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CC--ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DT--VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~--v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
...++ ||||-|.+.+.|...+-.+++-+|.|..|++.++.-. |. +....+|-|.|||.+++||+|+++.++||..|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 34789 9999999999998876679999999999999998753 44 45678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc----------ccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 193 LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP----------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~----------~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+...+..+...|||.|.|+-+ ..+...+.+++-... ..++..|....++-.++..+||.....-.+
T Consensus 153 LPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred CchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 999999999999999999765 444556666653321 125677888899999999999988765333
No 120
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.33 E-value=1.2e-11 Score=115.87 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=94.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--C--ceEEEeeccCCCCCCCCccEEEecccCc
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--T--VKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~--v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
..++.+|| ||||||.++...++.|..+|+|+|+++..++.|+++.. + .++......+.+ .+.||+|++|-...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~--~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLV--EGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTC--CS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccc--cccCCEEEECCCHH
Confidence 45778999 99999999988888887899999999999999998631 1 133222333333 49999999983321
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLK 268 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~ 268 (274)
-+......+.+.|||||+|+++-.... ..+++.+.+++ ||+++....+++-..++++
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~-------------------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEE-------------------QEDEVIEAYKQ-GFELVEEREEGEWVALVFK 293 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGG-------------------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHH-------------------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEE
Confidence 235677788999999999999722111 13577788877 9999888877776666666
Q ss_pred e
Q 023971 269 F 269 (274)
Q Consensus 269 ~ 269 (274)
|
T Consensus 294 K 294 (295)
T PF06325_consen 294 K 294 (295)
T ss_dssp E
T ss_pred e
Confidence 5
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.33 E-value=2.8e-11 Score=111.09 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=80.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCCCCccEEEec
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKWGPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~~sFD~V~~~ 184 (274)
..++.+|| ||||+|.++..+++..| .+|++||++++|++.|++.+ ++++++.+|+.+ ++...++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 34567999 99999999999988777 89999999999999999864 357899999865 34445789999986
Q ss_pred cc-CcCCC---CHHHHHHHHHHhcCCCCEEEEEc
Q 023971 185 FL-PAMPF---PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~-l~~~~---d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.. -...+ ...+.++++.++|+|||+++|..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 32 11111 23699999999999999999963
No 122
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.32 E-value=1.7e-12 Score=123.15 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=103.0
Q ss_pred HHHHHHHhCCCC------CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--------C-------C
Q 023971 104 RIDQIISAGEID------ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--------D-------T 160 (274)
Q Consensus 104 w~~~ll~~~~~~------~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--------~-------~ 160 (274)
|++.+|=..-.. ++.+|| +|||- |++..+.. .+...++|+|+|.+-|++|++|+ . .
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 777654222233 788999 99995 56666653 34479999999999999999998 1 1
Q ss_pred ceEEEeeccC------CCCCCCCccEEEecccCcCCCC----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh----
Q 023971 161 VKCWQGELIY------VPDKWGPLDVVFLYFLPAMPFP----LDQVFETLANRCSPGARVVISHPQGREALQKQRK---- 226 (274)
Q Consensus 161 v~~~~gDae~------LPf~~~sFD~V~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~---- 226 (274)
..|+.+|... ++.....||+|.|-|++|.... -+..|+.+...|||||+|+.+.+.+...+..++.
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~ 202 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSN 202 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhccc
Confidence 4677888753 3333469999999999997542 2357889999999999999987755443333322
Q ss_pred hC----c--------------------------c---cccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023971 227 QF----P--------------------------D---VIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 227 ~~----~--------------------------~---~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
.. . + .....+...+.+.+++++.|++.+...+-.+
T Consensus 203 ~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 203 SEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp CCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred ccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 00 0 0 0123466789999999999999887665443
No 123
>PRK01581 speE spermidine synthase; Validated
Probab=99.32 E-value=3e-11 Score=115.96 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccC-CCCCCCCcc
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~-LPf~~~sFD 179 (274)
....+|| ||||+|..+..+++..+ .+|++||++++|++.|++. -++++++.+|+.+ ++..++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4446999 99999998888887655 7999999999999999961 2468899999987 566678999
Q ss_pred EEEecccCcCC-----CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023971 180 VVFLYFLPAMP-----FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~-----~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++.+.-... .--.+.++.+.+.|+|||.+++... +. ... ... ...+.+.++++||.+.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~-sp-~~~--~~~-----------~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN-SP-ADA--PLV-----------YWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC-Ch-hhh--HHH-----------HHHHHHHHHHhCCceE
Confidence 99988421110 0115789999999999999988522 11 100 000 1236678888888877
Q ss_pred EEEe
Q 023971 255 NFVD 258 (274)
Q Consensus 255 ~~~d 258 (274)
.|..
T Consensus 294 ~y~t 297 (374)
T PRK01581 294 SYHT 297 (374)
T ss_pred EEEE
Confidence 7665
No 124
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=2.9e-11 Score=110.62 Aligned_cols=107 Identities=9% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC--CCCCCccEE
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP--DKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP--f~~~sFD~V 181 (274)
..+....+|| +|||+|.+...++++.+ .+|+|||+.++|.+.|++.. ..++++++|+.++. ..-.+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 3455578999 99999999999999865 89999999999999999864 35899999999875 334579999
Q ss_pred Eec--ccCcCCC----------------CHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 182 FLY--FLPAMPF----------------PLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 182 ~~~--f~l~~~~----------------d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
+|| |.-.... +.++.++...+.|||||++++-++..+
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 999 4332221 577788888999999999999876533
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.31 E-value=1.3e-11 Score=114.37 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeeccC-CCCCCCCccEE
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGELIY-VPDKWGPLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDae~-LPf~~~sFD~V 181 (274)
+...+|| ||||+|.++..+++... .+|++||++++|++.|++.+ ++++++.+|+.+ ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4557999 99999999998887644 79999999999999999854 357899999876 44456899999
Q ss_pred EecccCcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
++.....+... -++.++++.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 98754332221 267889999999999999984
No 126
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.31 E-value=3.2e-11 Score=105.99 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=100.9
Q ss_pred HHHHHHHhCCCCCCC-eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCC
Q 023971 104 RIDQIISAGEIDESS-KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~-rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~ 174 (274)
|+...+....+.+.+ ||| +|||.|.+...|++.+- +..+|||+|++-++.|+.. +++ ++|.|+|+.+-.+.
T Consensus 54 wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~ 133 (227)
T KOG1271|consen 54 WLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL 133 (227)
T ss_pred HHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc
Confidence 444444333466665 999 99999999999998864 7799999999999888753 444 89999999887777
Q ss_pred CCCccEEE-------ecccCcCCC-CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHH
Q 023971 175 WGPLDVVF-------LYFLPAMPF-PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 175 ~~sFD~V~-------~~f~l~~~~-d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll 246 (274)
.+.||+|. ++..+-... .+..-+..+.+.|+|||+++|+... -|.+||.+.+
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN--------------------~T~dELv~~f 193 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN--------------------FTKDELVEEF 193 (227)
T ss_pred ccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC--------------------ccHHHHHHHH
Confidence 78888886 222221211 2233456778899999999997442 2357899999
Q ss_pred HhCCCcEeEEEecC
Q 023971 247 GNHCFQIDNFVDES 260 (274)
Q Consensus 247 ~~aGF~~v~~~d~~ 260 (274)
+..||.....+..+
T Consensus 194 ~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTP 207 (227)
T ss_pred hcCCeEEEEeeccc
Confidence 99999888777666
No 127
>PRK03612 spermidine synthase; Provisional
Probab=99.30 E-value=3.4e-11 Score=120.34 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=93.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--C----------CCceEEEeeccC-CCCCCCCcc
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--Y----------DTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--~----------~~v~~~~gDae~-LPf~~~sFD 179 (274)
++..+|| ||||+|.++..+++..+ .+|++||++++|++.||+. . |+++++.+|+.+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999 99999999998887655 7999999999999999983 1 568899999987 444467999
Q ss_pred EEEecccCcCCCC-----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023971 180 VVFLYFLPAMPFP-----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~d-----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++.+.....++ -++.++++.+.|||||++++.... ...... .-.++.+.+++.||.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~--~~~~~~-------------~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS--PYFAPK-------------AFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC--cccchH-------------HHHHHHHHHHHcCCEEE
Confidence 9999854322221 136889999999999999985321 110000 01356677777788544
Q ss_pred EEEec
Q 023971 255 NFVDE 259 (274)
Q Consensus 255 ~~~d~ 259 (274)
.+...
T Consensus 441 ~~~~~ 445 (521)
T PRK03612 441 PYHVN 445 (521)
T ss_pred EEEeC
Confidence 44443
No 128
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.29 E-value=5.2e-11 Score=106.44 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023971 104 RIDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
-++.+++.+.-.+...|+ +|||.+.++..+... ..|.-.|+-.. +-....+|+.++|++++++|+|
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~--~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~ 126 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK--HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVA 126 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------STTEEES-TTS-S--TT-EEEE
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC--ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEE
Confidence 356667776655555444 999999999776321 46999998752 3356789999999999999999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-cC
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-ES 260 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-~~ 260 (274)
+++..+ +-.|....++|..|+|||||.|.|.+. .++|.+.+++.+.+++.||+...-.. +.
T Consensus 127 VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV-----------------~SRf~~~~~F~~~~~~~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 127 VFCLSL-MGTNWPDFIREANRVLKPGGILKIAEV-----------------KSRFENVKQFIKALKKLGFKLKSKDESNK 188 (219)
T ss_dssp EEES----SS-HHHHHHHHHHHEEEEEEEEEEEE-----------------GGG-S-HHHHHHHHHCTTEEEEEEE--ST
T ss_pred EEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEe-----------------cccCcCHHHHHHHHHHCCCeEEecccCCC
Confidence 988665 334888999999999999999999753 34556788999999999998876433 56
Q ss_pred CeEEEEEEecCC
Q 023971 261 GFYLVVLKFSKS 272 (274)
Q Consensus 261 ~~yl~v~~~~~~ 272 (274)
-|++..++|.+.
T Consensus 189 ~F~~f~F~K~~~ 200 (219)
T PF05148_consen 189 HFVLFEFKKIRK 200 (219)
T ss_dssp TEEEEEEEE-SS
T ss_pred eEEEEEEEEcCc
Confidence 667777777653
No 129
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.27 E-value=5.1e-11 Score=109.01 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCC--
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDK-- 174 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~-- 174 (274)
-.++..+++.||++|| .|+|+|.++.+|++. +| ++|+..|+.++..+.|++.+ .++++..+|+.+--|.
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4667789999999999 999999999999975 67 99999999999999999863 2589999999654332
Q ss_pred -CCCccEEEecccCcCCCCHHHHHHHHHHhc-CCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023971 175 -WGPLDVVFLYFLPAMPFPLDQVFETLANRC-SPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 175 -~~sFD~V~~~f~l~~~~d~~~al~el~RvL-KPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
++.+|+||.= +++|-+++..+.++| ||||++++.-|. +++. ....+.|++.||.
T Consensus 110 ~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~----ieQv---------------~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 110 LESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC----IEQV---------------QKTVEALREHGFT 165 (247)
T ss_dssp -TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS----HHHH---------------HHHHHHHHHTTEE
T ss_pred ccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC----HHHH---------------HHHHHHHHHCCCe
Confidence 4789999863 358889999999999 999999997553 3333 3455677888997
Q ss_pred EeEEEe
Q 023971 253 IDNFVD 258 (274)
Q Consensus 253 ~v~~~d 258 (274)
.++..+
T Consensus 166 ~i~~~E 171 (247)
T PF08704_consen 166 DIETVE 171 (247)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 665544
No 130
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.25 E-value=1.8e-10 Score=112.77 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC----CC
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY----VP 172 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~----LP 172 (274)
...+.+++.+.+.++.+|| +|||||.++..+++.+ .+|+|+|+|++|++.|+++. .+++|+++|+++ ++
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 3566777777888889999 9999999999998876 59999999999999999753 468999999975 34
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.+++||+|+++ -++.. ..+.++.+.+ ++|++.++|+.
T Consensus 363 ~~~~~fD~Vi~d-PPr~g--~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLD-PPRAG--AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEEC-cCCcC--hHHHHHHHHh-cCCCeEEEEEe
Confidence 556789999986 23332 3456665555 79999999973
No 131
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.25 E-value=6.6e-11 Score=108.73 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023971 105 IDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
++.+++.+...++.-|+ +|||-+.++. .. ...|...|+-+ .+-+.+.+|+.++|.+|++.|+++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec----------CCCceeeccccCCcCccCcccEEE
Confidence 46778888888888888 9999998775 11 24788888864 245667899999999999999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-cCC
Q 023971 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-ESG 261 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-~~~ 261 (274)
++..+ +..|....++|++|+|||||.++|..- .++|++..++.+.+...||.+....+ +..
T Consensus 234 ~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv-----------------~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 234 FCLSL-MGTNLADFIKEANRILKPGGLLYIAEV-----------------KSRFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eeHhh-hcccHHHHHHHHHHHhccCceEEEEeh-----------------hhhcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 77554 456899999999999999999999743 24567888899999999998665444 566
Q ss_pred eEEEEEEecC
Q 023971 262 FYLVVLKFSK 271 (274)
Q Consensus 262 ~yl~v~~~~~ 271 (274)
|++..++|..
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 6777777654
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=106.37 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=75.6
Q ss_pred CCCeEE-EEcCchHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec--ccCc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESS---P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY--FLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~---~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~ 188 (274)
.+.+|| +|||||.++..++++. + ..|+|||+++.|++.|++..+++.++++|+...++ +++||+|++| |...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 367999 9999999999887752 2 58999999999999999999999999999988775 5799999999 5533
Q ss_pred CCCC----------HHHHHHHHHHhcCCCCEEEE
Q 023971 189 MPFP----------LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d----------~~~al~el~RvLKPGGrlvI 212 (274)
...+ ..++++...|.++||+ +++
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 3222 4457778888565555 555
No 133
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.21 E-value=5.6e-11 Score=111.94 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=114.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCch-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-----------ceEEEeeccC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSE-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-----------VKCWQGELIY 170 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-----------v~~~~gDae~ 170 (274)
|++..|=..-.++++.|| +|||-| ++..+. +.+-+.++|+|+++.-+++|++||.+ +.|+.||...
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~-kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWD-KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhh-hhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 777666455567888999 999985 666555 33337999999999999999998642 5788888743
Q ss_pred ------CCCCCCCccEEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh----Cc-cc----
Q 023971 171 ------VPDKWGPLDVVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ----FP-DV---- 231 (274)
Q Consensus 171 ------LPf~~~sFD~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~----~~-~~---- 231 (274)
+++++.+||+|.|-|++|... ..+.+|+.+++.|||||.++=+-|.....+.+++.. |. ++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~ 263 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVT 263 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEe
Confidence 566666699999999988743 456789999999999999988766543344443322 10 00
Q ss_pred ---------------------------ccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 232 ---------------------------IVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 232 ---------------------------si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+..-+..-+.+..++++.|.+.+....-.++
T Consensus 264 y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df 321 (389)
T KOG1975|consen 264 YEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADF 321 (389)
T ss_pred eeeecccccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHH
Confidence 2334556778899999999988876654444
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.19 E-value=1.4e-10 Score=106.53 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
+...+|| ||||+|.++..+++..+ .+|++||++++|++.|++.+ ++++++.+|+.+ +...+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3446999 99999999988877654 78999999999999999864 346788888754 333357999999
Q ss_pred ecccCcCC--CC--HHHHHHHHHHhcCCCCEEEEE
Q 023971 183 LYFLPAMP--FP--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~--~d--~~~al~el~RvLKPGGrlvIs 213 (274)
+....... .+ ..++++.+.+.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86432111 11 358899999999999999985
No 135
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=2.6e-10 Score=103.08 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEeeccC
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQGELIY 170 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~gDae~ 170 (274)
+..+.+.++.||| .|||.|.-+..|+++|. +|+|||+|+.-++.+.++ ..++++++||+-+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3445556778999 99999999999999885 899999999999998663 2357999999999
Q ss_pred CCCC---CCCccEEEecc-cCcCCC-CHHHHHHHHHHhcCCCCEEEEE
Q 023971 171 VPDK---WGPLDVVFLYF-LPAMPF-PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 171 LPf~---~~sFD~V~~~f-~l~~~~-d~~~al~el~RvLKPGGrlvIs 213 (274)
++.. .+.||+|.-.. ..+..+ .+.+-.+.|.+.|+|||++++.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9742 26899997543 333333 4558888999999999999874
No 136
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.16 E-value=1.2e-10 Score=107.12 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCCCCCCc
Q 023971 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf~~~sF 178 (274)
....+.+++.+++.++++|| ||||||.++..|+++++ +|+|+|++++|++.++++. +++++++||+.++++.+-.+
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 34677888888999999999 99999999999999875 9999999999999999886 57999999999998765336
Q ss_pred cEEEecc
Q 023971 179 DVVFLYF 185 (274)
Q Consensus 179 D~V~~~f 185 (274)
|.|++|-
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 8888873
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.9e-09 Score=100.12 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=86.9
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEEec--ccCcC
Q 023971 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLY--FLPAM 189 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~ 189 (274)
+|| +|||||.++..++...+ ..|+|+|+|+.-|+.|+++. .++.++++|+-+ --.+.||+|++| |....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~--~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE--PLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc--ccCCceeEEEeCCCCCCCc
Confidence 799 99999999999999887 79999999999999999763 234566666532 223499999999 66554
Q ss_pred ---C------CC--------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHH
Q 023971 190 ---P------FP--------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 190 ---~------~d--------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll 246 (274)
. .+ .++.+.++.+.|+|||.+++.+..+. .+.+.+++
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q--------------------~~~v~~~~ 250 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ--------------------GEAVKALF 250 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc--------------------HHHHHHHH
Confidence 0 11 23456677889999999988644321 46788999
Q ss_pred HhCC-CcE-eEEEe
Q 023971 247 GNHC-FQI-DNFVD 258 (274)
Q Consensus 247 ~~aG-F~~-v~~~d 258 (274)
++.| |.. ..+++
T Consensus 251 ~~~~~~~~v~~~~d 264 (280)
T COG2890 251 EDTGFFEIVETLKD 264 (280)
T ss_pred HhcCCceEEEEEec
Confidence 9999 653 34444
No 138
>PLN02672 methionine S-methyltransferase
Probab=99.14 E-value=7.4e-10 Score=118.42 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=76.2
Q ss_pred CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------------------CCceEEEeeccCCCC
Q 023971 117 SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------------------DTVKCWQGELIYVPD 173 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------------------~~v~~~~gDae~LPf 173 (274)
+.+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++. .+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899 99999999999988876 89999999999999998652 247999999876432
Q ss_pred C-CCCccEEEec--ccCcCC----------CC--------------------------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 174 K-WGPLDVVFLY--FLPAMP----------FP--------------------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 174 ~-~~sFD~V~~~--f~l~~~----------~d--------------------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
. ...||+|++| +..... .+ .++++.+..++|||||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2379999988 443210 00 1567778889999999999864
Q ss_pred C
Q 023971 215 P 215 (274)
Q Consensus 215 ~ 215 (274)
.
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
No 139
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=104.65 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=103.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-------CCCceEEEeeccCC--CCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-------YDTVKCWQGELIYV--PDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-------~~~v~~~~gDae~L--Pf~~~sF 178 (274)
+...+++.|.+|| .|+|-|..+...++++..+|+-|+-.+..|+.|+-+ -..++.+.||+.++ .|.|++|
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445677899999 999999999998888867999999999999998854 12579999999885 3889999
Q ss_pred cEEEec---ccCcCCCCHHHHHHHHHHhcCCCCEEEE--EcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023971 179 DVVFLY---FLPAMPFPLDQVFETLANRCSPGARVVI--SHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 179 D~V~~~---f~l~~~~d~~~al~el~RvLKPGGrlvI--s~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
|+|+-- |.+.---=-++..+|++|+|||||++.= ..|..+ .+ -.+. +.++.+.++++||++
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-----yr-------G~d~--~~gVa~RLr~vGF~~ 272 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-----YR-------GLDL--PKGVAERLRRVGFEV 272 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-----cc-------cCCh--hHHHHHHHHhcCcee
Confidence 999832 2221111125789999999999999954 333211 11 1122 368889999999998
Q ss_pred eEEEecCCe
Q 023971 254 DNFVDESGF 262 (274)
Q Consensus 254 v~~~d~~~~ 262 (274)
+....+...
T Consensus 273 v~~~~~~~g 281 (287)
T COG2521 273 VKKVREALG 281 (287)
T ss_pred eeeehhccc
Confidence 888776643
No 140
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=3.6e-10 Score=116.72 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCC-CCCCCccEEEec--
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVP-DKWGPLDVVFLY-- 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LP-f~~~sFD~V~~~-- 184 (274)
.+.+|| +|||||.++..++..+..+|++||+|+.|++.|+++. .+++++++|+.+.. ...++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999 9999999999998865567999999999999999863 25789999986632 225789999986
Q ss_pred -ccCc--------CCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 185 -FLPA--------MPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 -f~l~--------~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|... ...+..+.+..+.++|+|||.++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2211 01234567888899999999998863
No 141
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.11 E-value=2.6e-10 Score=102.33 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----------------CCceEEE
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----------------DTVKCWQ 165 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----------------~~v~~~~ 165 (274)
.+.+.++.+...++.||| .|||.|.-+..|+++|. +|+|||+|+.-++.|.++. .++++++
T Consensus 25 ~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 25 ALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 455666667788888999 99999999999999884 9999999999999985432 1358899
Q ss_pred eeccCCCCCC-CCccEEEec-ccCc-CCCCHHHHHHHHHHhcCCCCEE-EEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023971 166 GELIYVPDKW-GPLDVVFLY-FLPA-MPFPLDQVFETLANRCSPGARV-VISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 166 gDae~LPf~~-~sFD~V~~~-f~l~-~~~d~~~al~el~RvLKPGGrl-vIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
||.-+++..+ ++||+|.=. +... ....+++-.+.|.+.|||||++ .|+-...... . .-+- - -.+.+|
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~----~-~GPP---f-~v~~~e 174 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE----M-EGPP---F-SVTEEE 174 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC----S-SSSS--------HHH
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC----C-CCcC---C-CCCHHH
Confidence 9999987655 589999844 2222 3446668888999999999993 3321110000 0 0000 0 124688
Q ss_pred HHHHHHhCCCcEeEEEe
Q 023971 242 LQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d 258 (274)
+.+++. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 888887 6788776654
No 142
>PLN02366 spermidine synthase
Probab=99.10 E-value=5.1e-10 Score=105.37 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCC-CC-CCCCccE
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYV-PD-KWGPLDV 180 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~L-Pf-~~~sFD~ 180 (274)
.....+|| ||||+|.++..+++..+ .+|+.||++++|++.||+.+ ++++++.+|+.+. .. .++.||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35568999 99999999999987644 78999999999999999864 3588999997543 21 2578999
Q ss_pred EEecccCcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
|++-..-.+.+. -.+.++.+.++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998643222111 247899999999999999873
No 143
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.10 E-value=4.5e-10 Score=100.55 Aligned_cols=104 Identities=23% Similarity=0.217 Sum_probs=85.6
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEe
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
..++......+..+|| ||+|+|.++..++++.| .+++..|+ |++++.+++ .++++++.||.. =|++. +|+|++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceee
Confidence 3445666778888999 99999999999999998 89999999 889999999 778999999996 34433 999999
Q ss_pred cccCcCCCCHH--HHHHHHHHhcCCC--CEEEEEc
Q 023971 184 YFLPAMPFPLD--QVFETLANRCSPG--ARVVISH 214 (274)
Q Consensus 184 ~f~l~~~~d~~--~al~el~RvLKPG--GrlvIs~ 214 (274)
...+|+..|.+ ++|+.+++.|+|| |+|+|.+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99998876544 7899999999999 9999954
No 144
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.09 E-value=5.1e-10 Score=102.17 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+..+++.+++.+++.++++|| ||||+|.++..+++++ .+|+|||+++.|++.++++. ++++++++|+.++++.
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP- 90 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch-
Confidence 4556888999999999999999 9999999999999886 58999999999999999874 4689999999998864
Q ss_pred CCccEEEecccCc
Q 023971 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
.||.|+++.-.+
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 489999984443
No 145
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=4.6e-10 Score=101.39 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=78.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CC-----CCCC
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PD-----KWGP 177 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf-----~~~s 177 (274)
...+..+|| ||||||.-+..+++. .+ ++|+++|.++++++.|++.. ..+++++||+.+. +. .+++
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 334567999 999999988777765 33 89999999999999999763 2478999999774 21 2478
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||+|++...- ......+.++.+.|||||.+++-+..
T Consensus 145 fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 145 FDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999987432 34467899999999999999985443
No 146
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.06 E-value=1.2e-09 Score=99.19 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+..+.+++++.+++.++++|| ||||+|.++..|+++++ .|+|+|+++.|++.++++. ++++++++|+.++|+.
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP- 90 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence 3445888999999999999999 99999999999998875 7999999999999999875 5789999999999875
Q ss_pred CCcc---EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 176 GPLD---VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD---~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+| +|+++--++. ....+..+.. .+|+..++
T Consensus 91 -~~d~~~~vvsNlPy~i---~~~il~~ll~--~~~~~~~~ 124 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYNI---SSPLIFKLLE--KPKFRLAV 124 (253)
T ss_pred -HcCCcceEEEcCChhh---HHHHHHHHhc--cCCCceEE
Confidence 566 7776643322 1233444332 56655444
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.04 E-value=5.5e-09 Score=101.69 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC----CCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV----PDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L----Pf~ 174 (274)
.+.+++.+.+.++++|| +|||+|.++..+++.. .+|+|||+++.|++.|+++ ..+++|+++|++++ ++.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 34556666777888999 9999999999998765 4899999999999999976 35789999999763 344
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++||+|++. -++.-. ..++++.+.+ ++|+|.++|+.
T Consensus 360 ~~~~D~vi~d-PPr~G~-~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 360 GQIPDVLLLD-PPRKGC-AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCCCCEEEEC-cCCCCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence 6789999975 223211 2466666554 89999888863
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.04 E-value=7.4e-10 Score=97.69 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=75.8
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC-CC--CCCCCccEEEecccCc
Q 023971 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY-VP--DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~-LP--f~~~sFD~V~~~f~l~ 188 (274)
-+| ||||.|.++..++...| ..++|||++...++.|.++ .+|+.++++|+.. |+ ++++++|.|+++|-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 677 99999999999999988 9999999999999887765 6789999999988 33 4679999999997422
Q ss_pred CCC--------CHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 189 MPF--------PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~--------d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+- =-.+.+.+++++|||||.|.+.+.
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 221 113789999999999999999543
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.04 E-value=6.7e-09 Score=100.88 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCCC----CCCCCccEEE
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYVP----DKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~LP----f~~~sFD~V~ 182 (274)
.++.+|| +|||||.++..++..+..+|++||.|+.|++.|++.. . ++++++||+.+.. ...++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4578999 9999999877655444469999999999999999752 2 5789999997742 2356899999
Q ss_pred ec--ccCcCCC-------CHHHHHHHHHHhcCCCCEEEEE
Q 023971 183 LY--FLPAMPF-------PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~--f~l~~~~-------d~~~al~el~RvLKPGGrlvIs 213 (274)
+. +....-. +..+.++...++|||||.|+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 88 2211111 2233444568999999999984
No 150
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=7.9e-09 Score=91.15 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=82.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEec--c
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLY--F 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~--f 185 (274)
+.-+|.+|+ +|||||.++...+-.++.+|+|||+.+++++.++++.. +++|+.+|+.+.. ..||.|++| |
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence 444677899 99999999988877888899999999999999998755 7999999998774 669999999 7
Q ss_pred cCcCC-CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023971 186 LPAMP-FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 186 ~l~~~-~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+.+.- .|. .++....+.. .+|- ++++-.+.+-+++..+.+|+++.
T Consensus 119 G~~~rhaDr-~Fl~~Ale~s----~vVY-------------------siH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 119 GSQRRHADR-PFLLKALEIS----DVVY-------------------SIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred ccccccCCH-HHHHHHHHhh----heEE-------------------EeeccccHHHHHHHHHhcCCeEE
Confidence 76532 232 4444444443 1211 23333455666777777777544
No 151
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.98 E-value=2.3e-09 Score=95.02 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=77.6
Q ss_pred HHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCCCCCC
Q 023971 106 DQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf~~~s 177 (274)
..+++.+. ..++.+|| +|||||.++..++.++..+|++||.+++.++.|++.. .+++++++|+.+ ++...++
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~ 121 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP 121 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence 33444432 24678999 9999999998655555579999999999999998752 358899999876 3333467
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHH--hcCCCCEEEEEcCC
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLAN--RCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~R--vLKPGGrlvIs~~~ 216 (274)
||+|+++=-++.- -.+++++.+.. .|+|+|.++|.|..
T Consensus 122 fDlV~~DPPy~~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 122 HNVVFVDPPFRKG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ceEEEECCCCCCC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 9999988221221 13455555544 37999999998653
No 152
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.98 E-value=3.6e-09 Score=91.89 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=92.9
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCC
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~s 177 (274)
+++.+..+...|--|| +|.|||.++.++++++. ..+++++.|++......+++|+++++.||+.++- +.+.-
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 4556667888888999 99999999999999863 8999999999999999999999999999999886 56778
Q ss_pred ccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs 213 (274)
||+|+|+.-+.+++- .-+.++++...|.+||.++-.
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 999999976666542 337889999999999999864
No 153
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.98 E-value=6.8e-09 Score=78.02 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=72.4
Q ss_pred EE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC--CC---ceEEEeeccC--CCCCC-CCccEEEecccCc
Q 023971 120 VL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY--DT---VKCWQGELIY--VPDKW-GPLDVVFLYFLPA 188 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~--~~---v~~~~gDae~--LPf~~-~sFD~V~~~f~l~ 188 (274)
+| +|||+|... .+..... ..++|+|+++.|++.++.+. .. +.+..+|... +|+.+ ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 89 999999965 3333332 37999999999999976654 22 5788899887 88887 5999993334444
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 189 MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+. ++...+.++.++|+|||.+++...
T Consensus 131 ~~-~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 131 LL-PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred cC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 488999999999999999999643
No 154
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.98 E-value=2.2e-09 Score=100.45 Aligned_cols=83 Identities=12% Similarity=0.276 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP 172 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP 172 (274)
.+..+++++++.+++.++++|| ||||+|.++..+++.+ .+|+|+|+++.|++.+++++ ++++++++|+.+.+
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3445889999999999999999 9999999999998876 48999999999999999863 46899999998876
Q ss_pred CCCCCccEEEecc
Q 023971 173 DKWGPLDVVFLYF 185 (274)
Q Consensus 173 f~~~sFD~V~~~f 185 (274)
+ ..||+|+++.
T Consensus 99 ~--~~~d~VvaNl 109 (294)
T PTZ00338 99 F--PYFDVCVANV 109 (294)
T ss_pred c--cccCEEEecC
Confidence 5 4789999873
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.96 E-value=2.7e-09 Score=99.69 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=75.3
Q ss_pred CeEE-EEcCchH----HHHHHHHhC-----CCcEEEEeCcHHHHHHHHHh-CC---------------------------
Q 023971 118 SKVL-VSISSEE----FVDRVVESS-----PSLLLVVHDSLFVLAGIKEK-YD--------------------------- 159 (274)
Q Consensus 118 ~rVL-vGcGTG~----l~~~L~~~~-----~~~V~gVD~S~~ML~~Ar~k-~~--------------------------- 159 (274)
=||+ .||+||. ++..|.+.. .-+|+|.|+|+.+|++|++- |+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999 9999994 333344432 14799999999999999953 11
Q ss_pred --------CceEEEeeccCCCCC-CCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 160 --------TVKCWQGELIYVPDK-WGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 160 --------~v~~~~gDae~LPf~-~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.|.|.+.|+.+-|+. .+.||+|+|-.++.++ +..+++++.+++.|+|||.|++.|..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 147888888875543 5899999997665554 35679999999999999999998754
No 156
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.95 E-value=5.8e-09 Score=94.46 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.8
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce------EEEeeccCCCCCC
Q 023971 104 RIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK------CWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~------~~~gDae~LPf~~ 175 (274)
++..+++..++ .++.+|| +|||||.++..+++.+..+|+|||++++||+...+..+.+. +...++++++.+-
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 56677777766 4677899 99999999999999866799999999999987444444432 2223344444334
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccc---cCCCHHHHHHHHHhCCC
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVS---DLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~---~fps~~eL~~ll~~aGF 251 (274)
..+|++|++..+ .+..+.+.|+| |.+++. .|+-.-......+ ..++.+ ..--.+++...+.+.||
T Consensus 142 ~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~--~giv~~~~~~~~~~~~~~~~~~~~~~ 210 (228)
T TIGR00478 142 ATFDVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNK--KGVVRDKEAIALALHKVIDKGESPDF 210 (228)
T ss_pred eeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCc--CCeecCHHHHHHHHHHHHHHHHcCCC
Confidence 578888876433 47888889999 887763 3321110000000 011100 01113566667888899
Q ss_pred cEeEEEe
Q 023971 252 QIDNFVD 258 (274)
Q Consensus 252 ~~v~~~d 258 (274)
.+..+.+
T Consensus 211 ~~~~~~~ 217 (228)
T TIGR00478 211 QEKKIIF 217 (228)
T ss_pred eEeeEEE
Confidence 8776654
No 157
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.94 E-value=2.2e-08 Score=89.40 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=106.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHH-----hCCCc-eEEEeeccCCCC--
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKE-----KYDTV-KCWQGELIYVPD-- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~-----k~~~v-~~~~gDae~LPf-- 173 (274)
-+-.+|+..-...+.+|| ||||||.-+.++++..| ....--|..+..+.-.++ ..+++ .-+.-|+.+-+-
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 344455444233333699 99999999999999887 677778888887643332 23443 223455554432
Q ss_pred ------CCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChh---------HHH-HHHhhCccccccc
Q 023971 174 ------KWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGRE---------ALQ-KQRKQFPDVIVSD 235 (274)
Q Consensus 174 ------~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~---------~l~-~~~~~~~~~si~~ 235 (274)
..++||+|++.-.+|-.+ .-+..|+...++|+|||.|++--|..+. .++ .++...+ ...
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp---~~G 169 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP---EWG 169 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC---CcC
Confidence 346999999887776543 4468899999999999999995443211 111 1122221 245
Q ss_pred CCCHHHHHHHHHhCCCcEeEEEecC-CeEEEEEEe
Q 023971 236 LPDQMTLQKAAGNHCFQIDNFVDES-GFYLVVLKF 269 (274)
Q Consensus 236 fps~~eL~~ll~~aGF~~v~~~d~~-~~yl~v~~~ 269 (274)
+.+.+++.++++++|++....++=+ ...++|.||
T Consensus 170 iRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 170 IRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 7889999999999999877766622 224666654
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.94 E-value=5e-09 Score=98.24 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=74.0
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCccEEEec
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sFD~V~~~ 184 (274)
+...++.+|| +|||+|.++..+++.+ .+|+|+|.|+.|++.|+++. .+++|+++|++++.. .++.||+|++.
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3333568999 9999999999998866 59999999999999998753 468999999988653 34679999987
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
-++.- ....+.++...++|++.++|+.
T Consensus 248 -PPr~G--~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 248 -PPRRG--IGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred -CCCCC--ccHHHHHHHHHcCCCeEEEEEC
Confidence 33331 1223334445578988888864
No 159
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.89 E-value=3.2e-09 Score=104.92 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=95.7
Q ss_pred eEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCCCCCCccEEEec-ccCcCCCCH
Q 023971 119 KVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPDKWGPLDVVFLY-FLPAMPFPL 193 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf~~~sFD~V~~~-f~l~~~~d~ 193 (274)
.+| ||||+|.|+++|.+++- -.+..-|..+..++.|.++ .|.+--+.| ...|||.+++||.|=|+ +...|..+-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~-s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG-SQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhc-cccccCCccchhhhhcccccccchhcc
Confidence 577 99999999999988763 1111226666788888877 443322222 36899999999999777 667777666
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEecC
Q 023971 194 DQVFETLANRCSPGARVVISHPQGR-EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~~~ 271 (274)
.-.|-|+-|||||||.++.+-+.-. ...+...+. ..+++++.+...|+.+..+++ ++|-+|+.
T Consensus 199 g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~-----------~~~~~~l~~~lCW~~va~~~~----~aIwqKp~ 262 (506)
T PF03141_consen 199 GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE-----------WNAMEDLAKSLCWKKVAEKGD----TAIWQKPT 262 (506)
T ss_pred cceeehhhhhhccCceEEecCCcccccchHHHHHH-----------HHHHHHHHHHHHHHHheeeCC----EEEEeccC
Confidence 6789999999999999999755321 111111112 356777888888987766555 78888774
No 160
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.88 E-value=1.1e-08 Score=94.15 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=95.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
...++| ||+|-|.++..++... .+|.+-+.|+.|....++|- .+.+ |+.++...+.+||+|.|--.+--+.+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~kg--~~vl--~~~~w~~~~~~fDvIscLNvLDRc~~P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKKG--FTVL--DIDDWQQTDFKFDVISCLNVLDRCDRPL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhCC--CeEE--ehhhhhccCCceEEEeehhhhhccCCHH
Confidence 346899 9999999999997655 58999999999988877753 2222 3333444567899999998998889999
Q ss_pred HHHHHHHHhcCCCCEEEEEc--CC------ChhHHHHHHhhCcccccccCC-CHHHHHHHHHhCCCcEeEEEecC
Q 023971 195 QVFETLANRCSPGARVVISH--PQ------GREALQKQRKQFPDVIVSDLP-DQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvIs~--~~------gr~~l~~~~~~~~~~si~~fp-s~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
..|++|.+.|+|+|+++++- |. +.+....-.+.. .+....|= ..+.+.+.++.+||++..|..-+
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l-~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL-PVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999841 11 000000000000 00000000 12345578999999999987655
No 161
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=1.2e-08 Score=88.78 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-Cc---------EEEEeCcHHHHHHHHHhCC------CceEEE
Q 023971 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SL---------LLVVHDSLFVLAGIKEKYD------TVKCWQ 165 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~---------V~gVD~S~~ML~~Ar~k~~------~v~~~~ 165 (274)
.....++...+..+++.|| --||||.+....+..+. .. ++|+|++++|++.|+++.. .+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3456777788899999999 99999999766544433 33 8999999999999997632 368899
Q ss_pred eeccCCCCCCCCccEEEec--ccCcCCC--CH----HHHHHHHHHhcCCCCEEEEE
Q 023971 166 GELIYVPDKWGPLDVVFLY--FLPAMPF--PL----DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~--f~l~~~~--d~----~~al~el~RvLKPGGrlvIs 213 (274)
+|+.++|+.++++|+|+++ |+.+... +. .+.++++.|+|+| +.++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 9999999888999999999 8877642 11 2557889999999 444443
No 162
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.8e-07 Score=87.76 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred ccccccCCccch--hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----
Q 023971 88 WSFLDSDELNFK--EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----- 158 (274)
Q Consensus 88 Wd~~~~~~~~~~--~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----- 158 (274)
+.+.+.-.-|+. .+. -.+-+++.+....+.+|| +|||.|.++..+++..| .+++-+|.+..-|+.||+..
T Consensus 129 ~~~~t~pGVFS~~~lD~-GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 129 LTFKTLPGVFSRDKLDK-GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred eEEEeCCCCCcCCCcCh-HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC
Confidence 445555444432 221 235567777777777999 99999999999999998 99999999999999999863
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CH---HHHHHHHHHhcCCCCEEEEE
Q 023971 159 DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PL---DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~---~~al~el~RvLKPGGrlvIs 213 (274)
.+..++..|. ..+-.+ +||.|+||=-+|--. .. ++.+++..+.|++||.|.|-
T Consensus 208 ~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 208 ENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred CccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 2234566665 344444 999999994334311 11 27888999999999999884
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.85 E-value=1.1e-07 Score=90.24 Aligned_cols=160 Identities=12% Similarity=0.080 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHhCC---C--CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CC----CceEE
Q 023971 99 KEHIQRIDQIISAGE---I--DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YD----TVKCW 164 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~---~--~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~----~v~~~ 164 (274)
.....|+.+++.... + ..+.+|| ||||+|-+...|+.+.+ .+++|+|+++.+++.|++. .+ .++++
T Consensus 92 ~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred HHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 344467778875431 2 2567999 99999999888877655 7999999999999999975 32 25554
Q ss_pred -EeeccCCC----CCCCCccEEEec--ccCcCCCC---HHHHHHHH----------------HHhcCCCCEEEEEcCCCh
Q 023971 165 -QGELIYVP----DKWGPLDVVFLY--FLPAMPFP---LDQVFETL----------------ANRCSPGARVVISHPQGR 218 (274)
Q Consensus 165 -~gDae~LP----f~~~sFD~V~~~--f~l~~~~d---~~~al~el----------------~RvLKPGGrlvIs~~~gr 218 (274)
+.|..++. ..++.||+|+|| |.-..... -.+-.+.+ .+.+.+||.+.+..+.-.
T Consensus 172 ~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~ 251 (321)
T PRK11727 172 LQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE 251 (321)
T ss_pred EccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH
Confidence 44544433 246789999999 44332211 01112222 233457787766433222
Q ss_pred hHHHHHHh-hCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 219 EALQKQRK-QFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 219 ~~l~~~~~-~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
.......+ .|-...+..-.+.+.+.+.+++.|...+...+
T Consensus 252 eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 252 ESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEE
Confidence 22111111 12222345567889999999999996666555
No 164
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.6e-08 Score=94.93 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-----CceEEEe-eccCC
Q 023971 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-----TVKCWQG-ELIYV 171 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~g-Dae~L 171 (274)
..++.-.+.++....+.+|++|| ==||||.++....-.| .+++|.|++..|++-|+.+.. +..+..+ ||.++
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 35556667788888999999999 9999999887775555 699999999999999998743 3445555 99999
Q ss_pred CCCCCCccEEEec--ccCcC---CCC----HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 172 PDKWGPLDVVFLY--FLPAM---PFP----LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 172 Pf~~~sFD~V~~~--f~l~~---~~d----~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+.+++||+|++- ++-.- ... .+++|+.+.++||+||++++.-+
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999999965 44322 112 46899999999999999999644
No 165
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.83 E-value=2.3e-08 Score=89.97 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhCCCC------CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-----ceEEEee
Q 023971 100 EHIQRIDQIISAGEID------ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-----VKCWQGE 167 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~------~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-----v~~~~gD 167 (274)
.+.+.-+..|+.+... ...++| .|+|-|+++..|+-..-.+|--||+.+..+++|++.... .++.+.-
T Consensus 33 ~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~g 112 (218)
T PF05891_consen 33 IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVG 112 (218)
T ss_dssp HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecC
Confidence 4444455666665444 357899 999999999977543226999999999999999976543 4566666
Q ss_pred ccCCCCCCCCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEc---CCChhHHHHHHhhCcccccccCCCHHHH
Q 023971 168 LIYVPDKWGPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISH---PQGREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 168 ae~LPf~~~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~---~~gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
+++.-...+.||+|.+-+++.+..|.+ +.|+.+...|+|||.++|-+ ..+...+++ .+-|+ -.+.+.+
T Consensus 113 LQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~-----~DsSv--TRs~~~~ 185 (218)
T PF05891_consen 113 LQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDE-----EDSSV--TRSDEHF 185 (218)
T ss_dssp GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEET-----TTTEE--EEEHHHH
T ss_pred HhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCC-----ccCee--ecCHHHH
Confidence 676644567999999998887776544 88999999999999999932 111100000 11122 2456899
Q ss_pred HHHHHhCCCcEeEEEecCCe
Q 023971 243 QKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d~~~~ 262 (274)
.+++++||++++..+...+|
T Consensus 186 ~~lF~~AGl~~v~~~~Q~~f 205 (218)
T PF05891_consen 186 RELFKQAGLRLVKEEKQKGF 205 (218)
T ss_dssp HHHHHHCT-EEEEEEE-TT-
T ss_pred HHHHHHcCCEEEEeccccCC
Confidence 99999999999988776655
No 166
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.81 E-value=3.3e-08 Score=91.71 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH-------h--------------------------CC---
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE-------K--------------------------YD--- 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~-------k--------------------------~~--- 159 (274)
.-+|| -|||.|+++-.++.+|- .+.|.++|--||-..+- . +|
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 46899 99999999999999875 89999999999866441 0 12
Q ss_pred ---------CceEEEeeccCCCCCC---CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023971 160 ---------TVKCWQGELIYVPDKW---GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 160 ---------~v~~~~gDae~LPf~~---~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
++....||..++...+ ++||+|+.+|.+---.|.-+-++.|.++|||||.-+=.-|..-+ ...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh-----~~~ 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYH-----FEP 210 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCcccc-----CCC
Confidence 1356679988887665 89999999998887778889999999999999944322121000 001
Q ss_pred C--c-ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 228 F--P-DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 228 ~--~-~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
. . +.++ + .+.+||..++++.||+++..+.
T Consensus 211 ~~~~~~~sv-e-Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MSIPNEMSV-E-LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCccc-C-CCHHHHHHHHHHCCCEEEEEEE
Confidence 1 0 1111 2 5689999999999999876554
No 167
>PLN02823 spermine synthase
Probab=98.80 E-value=3.7e-08 Score=93.93 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEEe
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVFL 183 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~~ 183 (274)
...+|| ||+|+|.++..+++..+ .+|+.||++++|++.|++.+ ++++++.+|+.+ |...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 446899 99999999988877544 78999999999999999764 457899999877 4555689999997
Q ss_pred cccCcC---CC---CHHHHHH-HHHHhcCCCCEEEEE
Q 023971 184 YFLPAM---PF---PLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~---~~---d~~~al~-el~RvLKPGGrlvIs 213 (274)
-..-.+ .. =-.+.++ .+.+.|+|||.+++.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632100 00 0246787 889999999999874
No 168
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.79 E-value=1.9e-08 Score=89.11 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCeEE-EEcCchH----HHHHHHHh--C--C--CcEEEEeCcHHHHHHHHHh-C-------------------------
Q 023971 116 ESSKVL-VSISSEE----FVDRVVES--S--P--SLLLVVHDSLFVLAGIKEK-Y------------------------- 158 (274)
Q Consensus 116 ~~~rVL-vGcGTG~----l~~~L~~~--~--~--~~V~gVD~S~~ML~~Ar~k-~------------------------- 158 (274)
..=||+ +||+||. ++..|.+. . + -+|+|.|+|+.+|++|++- |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 445899 9999994 33344441 1 1 4899999999999999953 0
Q ss_pred -------CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 159 -------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 159 -------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..+.|.+.|+.+.+...+.||+|+|--++-.+. ..+++++.+++.|+|||.|++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 125899999988445679999999986665543 3459999999999999999998654
No 169
>PLN02476 O-methyltransferase
Probab=98.77 E-value=4.8e-08 Score=90.94 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
+..+.+..+++. ....+|| ||||||..+..++... + ++|+++|.++++++.|++.+ ..++++.||+.+
T Consensus 105 ~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 105 DQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 333444444433 3467999 9999999999888753 3 78999999999999999753 258999999866
Q ss_pred -CCC-----CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 171 -VPD-----KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 -LPf-----~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||. .+++||.||+-..- .+....++.+.+.|+|||.+++-+..
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 332 24689999987542 34567888889999999999985443
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.75 E-value=4e-08 Score=89.00 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=79.4
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC---CCCCCccEEEecccC
Q 023971 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP---DKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l 187 (274)
-.+| ||||.|.++..++.+.| ..++||++...-+..|.++ .+|+.++++||.++- ++++++|-|+++|-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4788 99999999999999998 9999999999887777665 348899999998853 355699999999853
Q ss_pred cCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 188 AMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 188 ~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
-|.-. -...+++++|+|||||.|.+.+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 23221 13689999999999999999643
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.73 E-value=2.6e-07 Score=88.91 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=74.2
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC-CCCCCccEEEec
Q 023971 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP-DKWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP-f~~~sFD~V~~~ 184 (274)
+...++.+|| ++||||.++..++..+ .+|+|||.++.+++.|+++. .+++|.++|+++.. ...++||+|++.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3334567999 9999999999998765 58999999999999999752 46889999997743 223569999987
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
-++.-.+ .++++.+. .++|++.++|++
T Consensus 308 -PPr~G~~-~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 308 -PPRRGIG-KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred -CCCCCCc-HHHHHHHH-hcCCCeEEEEEe
Confidence 3443212 35555554 489999999975
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.72 E-value=6.9e-08 Score=87.08 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=78.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCC------CceEEE-eeccCCC--CCCCCccE
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYD------TVKCWQ-GELIYVP--DKWGPLDV 180 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~------~v~~~~-gDae~LP--f~~~sFD~ 180 (274)
......+|| ||+++|.-+.+++..-+ ++++.+|..++|.+.|++... .+..+. ||+.+.- +..++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 344667999 99999999988887654 899999999999999998632 366777 5876643 34799999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
||+=..-. +..+.+..+.+.|||||.+++
T Consensus 136 iFIDadK~---~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDADKA---DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeCChh---hCHHHHHHHHHHhCCCcEEEE
Confidence 99886543 346889999999999999998
No 173
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.8e-08 Score=87.05 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHhCC--CCCCCeEE-EEcCchHHHHHHHHh-C-C-CcEEEEeCcHHHHHHHHHhC---------------CCceEEE
Q 023971 107 QIISAGE--IDESSKVL-VSISSEEFVDRVVES-S-P-SLLLVVHDSLFVLAGIKEKY---------------DTVKCWQ 165 (274)
Q Consensus 107 ~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~-~-~-~~V~gVD~S~~ML~~Ar~k~---------------~~v~~~~ 165 (274)
.+++.+. +.||.+.| ||.|||.++...++. + + ..++|||.=++.++.++++. +++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4444554 78999999 999999999887754 3 3 34599999999999998763 2468899
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||....--+.++||+|.+.++- .+..+++...|||||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 9999988889999999998543 34456666679999999994
No 174
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.68 E-value=3e-07 Score=82.74 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=101.3
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC---CCCCccEEEecccCcCCCCH
Q 023971 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD---KWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf---~~~sFD~V~~~f~l~~~~d~ 193 (274)
-++| |||=+...... ..+--.|++||+.+. . -.+.+.|..+.|. +++.||+|+++.++..++++
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~--------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ--------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC--------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 4899 99875443222 112246999999862 2 3447888888775 57899999999999999877
Q ss_pred H---HHHHHHHHhcCCCCE-----EEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEE
Q 023971 194 D---QVFETLANRCSPGAR-----VVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLV 265 (274)
Q Consensus 194 ~---~al~el~RvLKPGGr-----lvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~ 265 (274)
. +.++.+++.|||+|. |.|..|.. .+...++.+.+.+..+|+..||..+.++..+.....
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~ 188 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYW 188 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------HhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEE
Confidence 6 789999999999999 77754532 123356788899999999999999999999999888
Q ss_pred EEEecCC
Q 023971 266 VLKFSKS 272 (274)
Q Consensus 266 v~~~~~~ 272 (274)
+.++...
T Consensus 189 l~r~~~~ 195 (219)
T PF11968_consen 189 LFRKSGK 195 (219)
T ss_pred EEeecCC
Confidence 8888754
No 175
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.65 E-value=4.3e-07 Score=82.13 Aligned_cols=167 Identities=19% Similarity=0.105 Sum_probs=100.4
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHH----HHHHHH
Q 023971 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFV----LAGIKE 156 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~M----L~~Ar~ 156 (274)
..|.|+..-+-+.- .+-..++.+.+.+|++|| +|..+|...-.+..- ++ +.|.||++|+.+ ++.| +
T Consensus 47 eYR~W~P~RSKLaA------ai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~ 119 (229)
T PF01269_consen 47 EYRVWNPFRSKLAA------AILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-K 119 (229)
T ss_dssp EEEEE-TTT-HHHH------HHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-H
T ss_pred ceeecCchhhHHHH------HHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-c
Confidence 77889974442111 122234556789999999 999999998888774 55 899999999954 4444 4
Q ss_pred hCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh-hCcccc
Q 023971 157 KYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRK-QFPDVI 232 (274)
Q Consensus 157 k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~-~~~~~s 232 (274)
+.+|+--+.+||..-. .--+.+|+|++--. ....-+-+...+..-||+||.++|. ...+. +.. .-++.
T Consensus 120 ~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~-iKa~s----iD~t~~p~~- 191 (229)
T PF01269_consen 120 KRPNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS-IKARS----IDSTADPEE- 191 (229)
T ss_dssp HSTTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE-EEHHH----H-SSSSHHH-
T ss_pred cCCceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE-EecCc----ccCcCCHHH-
Confidence 5678888899986411 12358999997643 2234456677777899999999985 11110 100 00000
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023971 233 VSDLPDQMTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
--.+-.+.+++.||+..+..+ +.+++++|++..
T Consensus 192 -----vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 192 -----VFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp -----HHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEec
Confidence 012334567888999888776 566788888754
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.65 E-value=1.7e-07 Score=83.51 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeec
Q 023971 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGEL 168 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDa 168 (274)
+.+.-+.+..+++..+ ..+|| ||||+|.-+..+++.-| ++|+.+|.++++.+.|++.+ ..++++.||+
T Consensus 30 ~~~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 3344456666665543 35899 99999999999987643 89999999999999999743 2589999999
Q ss_pred cC-CC---C--CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 169 IY-VP---D--KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 169 e~-LP---f--~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+ |+ - ..++||.||+-..- .+....+..+.+.|+|||.+++-+...
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccccc
Confidence 76 23 1 13689999988644 345678888889999999999965443
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.64 E-value=2e-06 Score=81.65 Aligned_cols=133 Identities=11% Similarity=0.069 Sum_probs=85.4
Q ss_pred cccccccccccccccCCccchhHHH------HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-CCcEEEEeC
Q 023971 79 NFEDFTEIDWSFLDSDELNFKEHIQ------RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-PSLLLVVHD 146 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~------w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-~~~V~gVD~ 146 (274)
-+|+.-.+-|+..+........+.+ ....+.+. +.++..++ +|||+|.=+..|++. + +.++++||+
T Consensus 35 ~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI 112 (319)
T TIGR03439 35 LYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDV 112 (319)
T ss_pred hhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3444455556655554333222211 12234433 45777899 999999876655442 2 267999999
Q ss_pred cHHHHHHHHHh-----CCCceE--EEeeccC----CCC--CCCCccEEE-ecccCcCCCCHH--HHHHHHHH-hcCCCCE
Q 023971 147 SLFVLAGIKEK-----YDTVKC--WQGELIY----VPD--KWGPLDVVF-LYFLPAMPFPLD--QVFETLAN-RCSPGAR 209 (274)
Q Consensus 147 S~~ML~~Ar~k-----~~~v~~--~~gDae~----LPf--~~~sFD~V~-~~f~l~~~~d~~--~al~el~R-vLKPGGr 209 (274)
|.++|+.+.++ +|.+++ ++||.++ +|- ......+|+ ....+.|+...+ ..|+++++ .|+|||.
T Consensus 113 S~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~ 192 (319)
T TIGR03439 113 SRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDS 192 (319)
T ss_pred CHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCE
Confidence 99999998875 455655 7888765 332 223456664 446788975433 56678899 9999999
Q ss_pred EEEE
Q 023971 210 VVIS 213 (274)
Q Consensus 210 lvIs 213 (274)
|+|+
T Consensus 193 lLiG 196 (319)
T TIGR03439 193 FLIG 196 (319)
T ss_pred EEEe
Confidence 9995
No 178
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.3e-07 Score=87.24 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+...++++++.+++.++++|| ||+|+|.+|..|++++. +|+||++.+.|++..+++. ++++.++||+...++..
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 3445688999999999999999 99999999999999885 8999999999999999884 57999999999998865
Q ss_pred C-CccEEEec
Q 023971 176 G-PLDVVFLY 184 (274)
Q Consensus 176 ~-sFD~V~~~ 184 (274)
- .++.|++|
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 4 78999987
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.64 E-value=2.9e-07 Score=91.44 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=79.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC-CCCCCccEEE-
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP-DKWGPLDVVF- 182 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP-f~~~sFD~V~- 182 (274)
.+.+|++|| +|||+|-=+..++... . +.|+++|+++..++..+++ ..++.....|+..++ ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 678999999 9999998888887763 3 7999999999999988865 346777889988764 3356899998
Q ss_pred ---ec-c-cCcCCCCH----------------HHHHHHHHHhcCCCCEEEEEcC
Q 023971 183 ---LY-F-LPAMPFPL----------------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ---~~-f-~l~~~~d~----------------~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ - .++--++. .+.|...++.|||||+||-++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 44 1 23321111 5678888999999999988754
No 180
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.64 E-value=8.7e-08 Score=92.28 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=107.1
Q ss_pred CCCcccccccc-ccccccccccccCCcc--ch-hHHHHHHH---HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEE
Q 023971 71 DEGTVSVVNFE-DFTEIDWSFLDSDELN--FK-EHIQRIDQ---IISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLL 142 (274)
Q Consensus 71 ~~~~~~~~~f~-~~~~~~Wd~~~~~~~~--~~-~~~~w~~~---ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~ 142 (274)
+|....|.+-. |++.+.|....+.... +. ....|++. .+-.....+++.++ +|||-|-...++..-....++
T Consensus 58 ~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~ 137 (364)
T KOG1269|consen 58 PEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVV 137 (364)
T ss_pred chHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCcc
Confidence 44444444444 7788889866554221 21 22225431 12224667888999 999999998888665447999
Q ss_pred EEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 143 VVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 143 gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|.++.-+.++..+. ....++.+|+.+.||+++.||.|-+.-...+.+++..+++|++||+||||.+++-
T Consensus 138 Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 138 GLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999888877542 2245688999999999999999988888888899999999999999999999984
No 181
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=1.4e-07 Score=82.68 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CC-C-CCC-CccEEEec
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VP-D-KWG-PLDVVFLY 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LP-f-~~~-sFD~V~~~ 184 (274)
++.+|| ++||||.++..++.++..+|++||.++.+++.+++.. .+++++++|+.+ +. . ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999 9999999999999887678999999999999988752 247899999955 32 1 123 47888865
Q ss_pred --ccCcCCCCHHHHHHHHH--HhcCCCCEEEEEcCC
Q 023971 185 --FLPAMPFPLDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 185 --f~l~~~~d~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
|.-. ..++++..+. ..|++||.+++.|..
T Consensus 129 PPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG---ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4432 2345555554 469999999987653
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.60 E-value=2.2e-07 Score=92.95 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEeccc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLYFL 186 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~f~ 186 (274)
.+..+| ||||.|.++..++...| ..++|||.+..-+++|.++ ..|+.++.+|++.+. ++++++|.|+++|-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 345678 99999999999999988 8999999999987776655 457888888886543 67899999999985
Q ss_pred CcCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 187 PAMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 187 l~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
=-|+-. -.+.+++++++|||||.+.+.+.
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 333221 13688999999999999999643
No 183
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.59 E-value=3.4e-06 Score=79.05 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=101.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHh-----CCCc-eEEEeeccC---CCCCCCCccEEE
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAGIKEK-----YDTV-KCWQGELIY---VPDKWGPLDVVF 182 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k-----~~~v-~~~~gDae~---LPf~~~sFD~V~ 182 (274)
..-+|| |+||.|......++..+ ..|+-.|+|+.-++++++- +.++ +|.++||-+ +...+-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 445899 99999987665555433 6899999999999988753 4555 999999866 222234568888
Q ss_pred ecccCcCCCC---HHHHHHHHHHhcCCCCEEEEEc-CCChhHHHHHHhhCc-----ccccccCCCHHHHHHHHHhCCCcE
Q 023971 183 LYFLPAMPFP---LDQVFETLANRCSPGARVVISH-PQGREALQKQRKQFP-----DVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 183 ~~f~l~~~~d---~~~al~el~RvLKPGGrlvIs~-~~gr~~l~~~~~~~~-----~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++-.+-.++| ..+.++-+++.+.|||.++-+- |.-+. ++.+.+... ..=+..--|+.|+.++.+++||+-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-hHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 7755666666 3467889999999999999862 22111 111111110 012456679999999999999955
Q ss_pred eEEEecCCeEEEEE
Q 023971 254 DNFVDESGFYLVVL 267 (274)
Q Consensus 254 v~~~d~~~~yl~v~ 267 (274)
+.-.-++...+.|-
T Consensus 294 ~~q~ID~~GIFTVS 307 (311)
T PF12147_consen 294 IDQRIDEWGIFTVS 307 (311)
T ss_pred hhheeccCCceEEE
Confidence 54444444445553
No 184
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=2.7e-08 Score=92.42 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
....++-+| +|||-|..+. ..| ..++|.|.+.+.+..|+++.+. ....+|+.++|+.+.+||.+++..++||.
T Consensus 42 ~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhl 116 (293)
T KOG1331|consen 42 SQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHL 116 (293)
T ss_pred ccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhh
Confidence 345578888 9999997432 224 7899999999999999988775 55789999999999999999988888886
Q ss_pred C---CHHHHHHHHHHhcCCCCEEEE
Q 023971 191 F---PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~---d~~~al~el~RvLKPGGrlvI 212 (274)
. ...++++|+.|+|||||...|
T Consensus 117 sT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 117 STRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEE
Confidence 5 345899999999999999877
No 185
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=80.22 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=87.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCC--------------------------------
Q 023971 115 DESSKVL-VSISSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDT-------------------------------- 160 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~-------------------------------- 160 (274)
-++..+| |||-.|.++..+++.. +..|+|||+.+..++.|++..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 4556899 9999999999998874 48899999999999999975321
Q ss_pred --------c-----eEEEeeccCCCCCCCCccEEEec---ccCc--C-CCCHHHHHHHHHHhcCCCCEEEEEcCCC-hhH
Q 023971 161 --------V-----KCWQGELIYVPDKWGPLDVVFLY---FLPA--M-PFPLDQVFETLANRCSPGARVVISHPQG-REA 220 (274)
Q Consensus 161 --------v-----~~~~gDae~LPf~~~sFD~V~~~---f~l~--~-~~d~~~al~el~RvLKPGGrlvIs~~~g-r~~ 220 (274)
+ .+++-..+=|.+....||+|.|. -|+| | -+-+.+.|+.+.+.|.|||+||+. |+. ..+
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWksY 215 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKSY 215 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHHH
Confidence 0 11111111133456789999977 3333 2 234668999999999999999985 432 222
Q ss_pred HHHHH---hhCcccccccCCCHHHHHHHHHhC--CCc
Q 023971 221 LQKQR---KQFPDVIVSDLPDQMTLQKAAGNH--CFQ 252 (274)
Q Consensus 221 l~~~~---~~~~~~si~~fps~~eL~~ll~~a--GF~ 252 (274)
.+.-+ ..+.. --.-+..++....++.+. ||+
T Consensus 216 ~kaar~~e~~~~n-y~~i~lkp~~f~~~l~q~~vgle 251 (288)
T KOG2899|consen 216 KKAARRSEKLAAN-YFKIFLKPEDFEDWLNQIVVGLE 251 (288)
T ss_pred HHHHHHHHHhhcC-ccceecCHHHHHhhhhhhhhhee
Confidence 11111 11111 012245567777777766 454
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.53 E-value=6.7e-07 Score=81.98 Aligned_cols=110 Identities=7% Similarity=0.027 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeecc
Q 023971 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELI 169 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae 169 (274)
.+.-+.+..+++.. ...+|| |||++|.-+.++++.. + ++|+.+|.++++.+.|++.+ ..+++++||+.
T Consensus 65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 34444556666544 346899 9999999988887753 4 89999999999999998753 35899999997
Q ss_pred C-CCC------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 170 Y-VPD------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 170 ~-LPf------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+ ||. ..++||.||+-..-. ....-++.+.+.|+|||.+++-.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcC
Confidence 7 342 136999999885533 33566777788999999998843
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-06 Score=73.24 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCCCCCCeEE-EEcCchH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC-CCCccEEEecccCc
Q 023971 112 GEIDESSKVL-VSISSEE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK-WGPLDVVFLYFLPA 188 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~-~~sFD~V~~~f~l~ 188 (274)
+....+.+|| ||||+|. ++..|.+.+ ..|+|+|.++..++.|+++ .+.++++|+-+-.+. -+.+|+|. .+|
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~~a~liy---sir 85 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYKNAKLIY---SIR 85 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHhcCCEEE---EeC
Confidence 3444567999 9999995 888888777 4999999999999989876 468899998776554 36788887 457
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 189 MPFPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
-..+....+.++++.+ |.-++|.+..+.
T Consensus 86 pp~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 86 PPRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 7788899999999988 889999865443
No 188
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.8e-06 Score=76.03 Aligned_cols=173 Identities=18% Similarity=0.134 Sum_probs=114.8
Q ss_pred cccccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHH
Q 023971 75 VSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLA 152 (274)
Q Consensus 75 ~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~ 152 (274)
+-.+.+++-..|.|+..-+-+.- .+-..++.+.+++|++|| +|.-+|+..-....-.+ +.|.||.+|+.|..
T Consensus 41 E~ii~~~~~eYR~Wnp~RSKLaA------aIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r 114 (231)
T COG1889 41 ERIIKVEGEEYREWNPRRSKLAA------AILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR 114 (231)
T ss_pred ceeEEecCcceeeeCcchhHHHH------HHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH
Confidence 34566778788899985443211 223345567789999999 99999998888877644 89999999999775
Q ss_pred HHH---HhCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh-----HH
Q 023971 153 GIK---EKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE-----AL 221 (274)
Q Consensus 153 ~Ar---~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~-----~l 221 (274)
..- ++.+|+--+.+||..-- .-=+.+|+|+.--.=. ..-+-+..++..-||+||.++|. ...|. ..
T Consensus 115 eLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp--~Qa~I~~~Na~~FLk~~G~~~i~-iKArSIdvT~dp 191 (231)
T COG1889 115 ELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP--NQAEILADNAEFFLKKGGYVVIA-IKARSIDVTADP 191 (231)
T ss_pred HHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCCc--hHHHHHHHHHHHhcccCCeEEEE-EEeecccccCCH
Confidence 532 44678888899985421 2236699998653221 23345667888999999988774 11111 00
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023971 222 QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
++.. .+|+ +.+++.||++....+ +.++++.|.+..
T Consensus 192 ~~vf-------------~~ev-~kL~~~~f~i~e~~~LePye~DH~~i~~~~~ 230 (231)
T COG1889 192 EEVF-------------KDEV-EKLEEGGFEILEVVDLEPYEKDHALIVAKYK 230 (231)
T ss_pred HHHH-------------HHHH-HHHHhcCceeeEEeccCCcccceEEEEEeec
Confidence 1110 1234 456777899888877 567788887653
No 189
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.51 E-value=1.7e-07 Score=89.30 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCCCCCccEEEec--
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDKWGPLDVVFLY-- 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~~~sFD~V~~~-- 184 (274)
+=.+..|| ||||||.+....++.|..+|.|||.|. |.+.|++- +.+ +++++|.+|++-++-+.+|+|++-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 44678999 999999999988888888999999997 44777754 233 789999999865557999999976
Q ss_pred -ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 185 -FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 -f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+++-.-.-++.++-.=-+.|+|||.++=
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2222222344555555689999998753
No 190
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=1.4e-06 Score=80.81 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCeEE-EEcCchH----HHHHHHHhC------CCcEEEEeCcHHHHHHHHHh-CC-------------------------
Q 023971 117 SSKVL-VSISSEE----FVDRVVESS------PSLLLVVHDSLFVLAGIKEK-YD------------------------- 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~----l~~~L~~~~------~~~V~gVD~S~~ML~~Ar~k-~~------------------------- 159 (274)
.=||. +||+||. ++..|.+.. .-+|+|.|+|..+|++|++- |+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 35899 9999993 444444433 16899999999999999842 21
Q ss_pred --------CceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 160 --------TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 160 --------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.|.|.+.|+.+-+...+.||+|+|--++-.+. ..+++++.++..|+|||.|+|.|..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 14677777766554568899999975555443 4459999999999999999998754
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.49 E-value=7.4e-07 Score=86.35 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=74.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023971 117 SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
+.+|| ++||+|.++..++...+ ..|+++|.++..++.+++.. .++.+.++|+..+....+.||+|++.= +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899 99999999999877644 68999999999999998753 356789999987543256799999871 2
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+...+....+.++|||.++|+
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23467777777889999999997
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.44 E-value=5.3e-07 Score=82.27 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCC-CCCCC-CccEE
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYV-PDKWG-PLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~L-Pf~~~-sFD~V 181 (274)
+...+|| ||-|.|..+..+.+..+ .+|++||+++.+++.|++-+ ++++++.+|+... -...+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3567999 99999999999987654 79999999999999999743 4678999998663 23334 89999
Q ss_pred Eeccc-CcCCCC---HHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFL-PAMPFP---LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~-l~~~~d---~~~al~el~RvLKPGGrlvIs 213 (274)
++-.. +..... -.+.++.+.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 97522 221111 258999999999999999984
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.43 E-value=2.2e-06 Score=80.03 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=77.2
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccCC-CCCCCCccEEEecc
Q 023971 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIYV-PDKWGPLDVVFLYF 185 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~L-Pf~~~sFD~V~~~f 185 (274)
.+|| ||-|.|.+++.+++..+ .+++.||+.+++++.+|+-+| .++.+.+|+-+. ....++||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 5999 99999999999988776 899999999999999998643 467888998774 33445899999763
Q ss_pred cCc----CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPA----MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~----~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.-. -.---.+.++.+.|.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 322 1111268999999999999999985
No 194
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=79.99 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhCCCCC---CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEE----
Q 023971 100 EHIQRIDQIISAGEIDE---SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCW---- 164 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~---~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~---- 164 (274)
+-.+|++.+++.++-.+ +..+| +|||+|.++..++..-+ ++|+|||.|+.-+..|.++.. .+..+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 55568888888775443 34599 99999999998877645 899999999999999987632 23333
Q ss_pred EeeccC-CCCCCCCccEEEec--ccCcCC-C---------CH--------------HHHHHHHHHhcCCCCEEEEE
Q 023971 165 QGELIY-VPDKWGPLDVVFLY--FLPAMP-F---------PL--------------DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 165 ~gDae~-LPf~~~sFD~V~~~--f~l~~~-~---------d~--------------~~al~el~RvLKPGGrlvIs 213 (274)
++|+.. .|..++..|++++| |...-- . ++ ...+.-..|.|+|||.+.+.
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 555533 45678999999998 433211 0 11 12334457999999999885
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.41 E-value=5.3e-06 Score=79.62 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC-CC-C---
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV-PD-K--- 174 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L-Pf-~--- 174 (274)
..+.+.+... +.+|| ++||+|.++..|++.. .+|+|||.|+.|++.|+++ ..+++|+.+|+++. +. .
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~ 274 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVR 274 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcc
Confidence 3444444332 35799 9999999999888765 4899999999999999975 34688999999873 21 0
Q ss_pred -----------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 175 -----------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 -----------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
...||+|+.- -++.- --+++++.+. +|++.++|+.
T Consensus 275 ~~~~~~~~~~~~~~~D~v~lD-PPR~G-~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 275 EFNRLKGIDLKSYNFSTIFVD-PPRAG-LDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred cccccccccccCCCCCEEEEC-CCCCC-CcHHHHHHHH---ccCCEEEEEe
Confidence 2258999874 33421 1245555554 4788888874
No 196
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.41 E-value=5.2e-06 Score=79.19 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=106.1
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccC-CCCCCCCccEEEecccCcCCCCHH
Q 023971 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIY-VPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~-LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
...+ ||.|+|+++..+....| +|-++++...-+-.++..+ ++++.+-||.-+ +|.. |+|++-..+|++.|.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWILHDWTDED 253 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEeecccCChHH
Confidence 5667 99999999999988776 7999999999998888888 889888888643 6654 4999999988877655
Q ss_pred --HHHHHHHHhcCCCCEEEEEcCCChh--HHH-----------HHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 195 --QVFETLANRCSPGARVVISHPQGRE--ALQ-----------KQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 195 --~al~el~RvLKPGGrlvIs~~~gr~--~l~-----------~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+.|+.++.-|+|||.++|-+..-.. ... .+.... .+...=.+.+|.+.++.++||.+..+...
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~--~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQ--TSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHH--hccceeccHHHHHhcchhhcCceeEEEec
Confidence 8999999999999999995431110 000 000000 01122356899999999999999999887
Q ss_pred CCeEEEE
Q 023971 260 SGFYLVV 266 (274)
Q Consensus 260 ~~~yl~v 266 (274)
...|=++
T Consensus 332 ~~~~~~I 338 (342)
T KOG3178|consen 332 AYSYSVI 338 (342)
T ss_pred cCccchh
Confidence 7765443
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.39 E-value=4.3e-06 Score=73.48 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=88.9
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCC----CCCCC-eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHH-
Q 023971 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGE----IDESS-KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAG- 153 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~----~~~~~-rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~- 153 (274)
+...+ |.......+.......|.+.+++.+. +.... +++ ||+|.|--+..|+=..| .+++-||....-++-
T Consensus 10 ~lL~~-~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL 88 (184)
T PF02527_consen 10 ELLLE-WNKKINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFL 88 (184)
T ss_dssp HHHHH-HHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHH
T ss_pred HHHHH-hCceeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHH
Confidence 33344 77666665555455667777766542 33333 899 99999977776665566 789999999985543
Q ss_pred --HHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 154 --IKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 154 --Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.++ .+|++++.+.+|+ +...++||+|++- -+.+....++-+.+.|||||+++..
T Consensus 89 ~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 89 KEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR----AVAPLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE----SSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee----hhcCHHHHHHHHHHhcCCCCEEEEE
Confidence 4443 5689999999999 6678999999985 4457789999999999999999985
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.38 E-value=1e-06 Score=76.10 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=69.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccC-C--C-CCCCCc
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIY-V--P-DKWGPL 178 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~-L--P-f~~~sF 178 (274)
....+.+|| +|||||-.+..++.. +..+|+.-|..+ -++..+... +++.+..-|+.+ + . ...++|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 345678999 999999888888777 347999999999 777666541 346666666544 1 1 234689
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|+|+++-.+.+....+..++-+.+.|+|+|.+++++..
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999977777777888999999999999998887654
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=1.1e-06 Score=82.47 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=77.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC--CC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD--KW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf--~~ 175 (274)
-++.+++.+.+.++..+| ++||+|..+..+++..+ ++|+|+|.+++|++.|+++. .+++++++|..++.. .+
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 367888889889999999 99999999999998853 89999999999999999886 368999999987642 11
Q ss_pred --CCccEEEecccCc--CCCCHHHHHH
Q 023971 176 --GPLDVVFLYFLPA--MPFPLDQVFE 198 (274)
Q Consensus 176 --~sFD~V~~~f~l~--~~~d~~~al~ 198 (274)
.++|+|++.++.- .+.++++.|.
T Consensus 87 ~~~~vDgIl~DLGvSs~Qld~~~RGFS 113 (296)
T PRK00050 87 GLGKVDGILLDLGVSSPQLDDAERGFS 113 (296)
T ss_pred CCCccCEEEECCCccccccCCCcCCcc
Confidence 2899999886643 3557777776
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.37 E-value=3.2e-06 Score=80.90 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC----
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK---- 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~---- 174 (274)
...+++.+...+ .+|| ++||||.++..|++.. .+|+|||.+++|++.|+++. .+++|+++|++++-..
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhc
Confidence 445555544333 4799 9999999999888766 49999999999999999763 3688999999873211
Q ss_pred ------------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 175 ------------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ------------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
...||+|+.- -++.-. ..++++.+ ++|++.++|+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lD-PPR~G~-~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVD-PPRAGL-DPDTCKLV---QAYERILYISC 311 (353)
T ss_pred cccccccccccccCCCCEEEEC-CCCCCC-cHHHHHHH---HcCCcEEEEEc
Confidence 1237998864 334321 23555554 44889999974
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.37 E-value=1.6e-06 Score=80.53 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC------ceEEEeeccCCCCCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT------VKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~------v~~~~gDae~LPf~~~ 176 (274)
.+..+++...+++++.|| ||.|||.++..|++.+. +|+|+++.+.|++...++..+ ++.++||....++ -
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--c
Confidence 567888899999999999 99999999999999884 999999999999999998643 6788999977643 4
Q ss_pred CccEEEec
Q 023971 177 PLDVVFLY 184 (274)
Q Consensus 177 sFD~V~~~ 184 (274)
-||.++++
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 59999975
No 202
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1e-05 Score=75.31 Aligned_cols=104 Identities=20% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC--
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD-- 173 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf-- 173 (274)
+..++.++++.||++|| -|+|+|.+.-++++. +| +++.-.|+-+.--++|++.+ .++++..-|+...-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 45778889999999999 999999999999886 67 99999999888888888753 357887777776544
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvIs 213 (274)
++..+|+||.- ++.|-.|+-.++.+||.+| +|+..
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEec
Confidence 46889999863 3467789999999999988 66654
No 203
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.33 E-value=8.4e-06 Score=79.40 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-------CceEEEeeccCCC----CCCCCccEEEec
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-------TVKCWQGELIYVP----DKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-------~v~~~~gDae~LP----f~~~sFD~V~~~ 184 (274)
|.||| +-|=||.++...+..|..+||.||.|..-|+.|++++. .++|+++|+-+.- -....||+|++-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 89999 99999999988877776799999999999999998742 3689999996632 344699999965
Q ss_pred ---cc------CcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 185 ---FL------PAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 185 ---f~------l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ ++-..|....+....++|+|||.++++..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 11122445667778899999999999644
No 204
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.33 E-value=1.5e-06 Score=80.09 Aligned_cols=148 Identities=9% Similarity=0.081 Sum_probs=91.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---C-----------------------------
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---D----------------------------- 159 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---~----------------------------- 159 (274)
-..|.++| ||||+ .+-..|....- .+|+..|+++.=++..++=. .
T Consensus 54 ~~~g~~llDiGsGP-tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGP-TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT---GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCc-HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 34577999 99999 34344433222 68999999998776554310 0
Q ss_pred -Cc-eEEEeeccCCC-CCC-----CCccEEEecccCc----CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023971 160 -TV-KCWQGELIYVP-DKW-----GPLDVVFLYFLPA----MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 160 -~v-~~~~gDae~LP-f~~-----~sFD~V~~~f~l~----~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
.+ +.+..|+.+.+ +.. ..||+|++.|.+- ..+....|++.+.+.|||||.|++....+.. .
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-------~ 205 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-------Y 205 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-------E
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-------e
Confidence 02 46678988754 322 2499999887653 2334558999999999999999996332211 1
Q ss_pred Ccc---cccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEe
Q 023971 228 FPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKF 269 (274)
Q Consensus 228 ~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~ 269 (274)
|.. .-..--.+.+.+++.++++||.+..++. .++++++|.||
T Consensus 206 Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 206 YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred EEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 110 0011124689999999999999888763 34567777776
No 205
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.26 E-value=3.6e-07 Score=78.41 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=69.1
Q ss_pred HHHHHHHhCC-CCCC--CeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC------C
Q 023971 104 RIDQIISAGE-IDES--SKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY------V 171 (274)
Q Consensus 104 w~~~ll~~~~-~~~~--~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~------L 171 (274)
++.++.+..+ +.++ .+|| +||++|-++..++++. + .+|+|||+.+. ...+++.+++||..+ +
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHSHHG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHHHhh
Confidence 5667777777 5554 8999 9999999999999987 4 89999999986 333566666666543 1
Q ss_pred C----CCCCCccEEEecccCcCCC----CH-------HHHHHHHHHhcCCCCEEEEEcCC
Q 023971 172 P----DKWGPLDVVFLYFLPAMPF----PL-------DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 172 P----f~~~sFD~V~~~f~l~~~~----d~-------~~al~el~RvLKPGGrlvIs~~~ 216 (274)
. ...+.||+|++=.++.... |. ..++.-+.+.|||||.+++-...
T Consensus 82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 1236999999876332221 11 23444445779999999985433
No 206
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.24 E-value=2.8e-06 Score=79.52 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccC-
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIY- 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~- 170 (274)
+++..++.+-+. ..+.+|| +-|=||.++.+.+..|..+|+.||.|...|+.|++.+ ..++|+++|+-+
T Consensus 110 DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 110 DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 444444444333 3578999 9999999998876655568999999999999999862 357899999865
Q ss_pred CC--CCCCCccEEEec---ccCcCC---CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 171 VP--DKWGPLDVVFLY---FLPAMP---FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 171 LP--f~~~sFD~V~~~---f~l~~~---~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. -..+.||+|++- |.-.-. .+..+.+..+.++|+|||.|+++
T Consensus 187 l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 187 LKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp HHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 135799999975 432221 14446677788999999999874
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.24 E-value=8.9e-06 Score=84.40 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=79.8
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHh-------------------------------------------CC
Q 023971 104 RIDQIISAGEI-DESSKVL-VSISSEEFVDRVVES-------------------------------------------SP 138 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~-------------------------------------------~~ 138 (274)
....++...+. .++..++ -.||+|.+....+.. .+
T Consensus 177 lAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 177 LAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 34456666676 5677888 999999997554321 01
Q ss_pred CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC--CCCccEEEec--ccCcCCC--CHHHH---HHHHHHh
Q 023971 139 SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK--WGPLDVVFLY--FLPAMPF--PLDQV---FETLANR 203 (274)
Q Consensus 139 ~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~--~~sFD~V~~~--f~l~~~~--d~~~a---l~el~Rv 203 (274)
.+++|+|++++|++.|+++. . .+.+.++|+.+++.. .++||+|++| |+-+... +.++. +.+..+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 26999999999999999863 2 378999999998754 3589999999 7777643 23334 3444555
Q ss_pred cCCCCEEEEEcC
Q 023971 204 CSPGARVVISHP 215 (274)
Q Consensus 204 LKPGGrlvIs~~ 215 (274)
..||+++++..+
T Consensus 337 ~~~g~~~~llt~ 348 (702)
T PRK11783 337 QFGGWNAALFSS 348 (702)
T ss_pred hCCCCeEEEEeC
Confidence 559999988544
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.22 E-value=5.4e-06 Score=76.94 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=76.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh--------CCCcEEEEeCcHHHHHHHHHhC-------CCceEEEee
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES--------SPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGE 167 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~--------~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gD 167 (274)
..+-+++.+...++.+|| -+||||.|+..+.+. ....++|+|+++.+++.|+-+. .+..+.++|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 455666677888888999 999999998777652 2378999999999999888541 224578888
Q ss_pred ccCCCCC--CCCccEEEec--ccCc-CCC-----------------CHH-HHHHHHHHhcCCCCEEEEEcC
Q 023971 168 LIYVPDK--WGPLDVVFLY--FLPA-MPF-----------------PLD-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 168 ae~LPf~--~~sFD~V~~~--f~l~-~~~-----------------d~~-~al~el~RvLKPGGrlvIs~~ 215 (274)
.-.-+.. ...||+|+++ |+.. +.. +.+ ..+..+.+.||+||++++.-|
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 7665543 4799999998 6544 100 111 466788999999999877434
No 209
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.21 E-value=6.7e-06 Score=81.33 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhC-----CCcEEEEeCcHHHHHHHHHh-----C-CCceEEEeeccCCCCCCCCccEEEec
Q 023971 117 SSKVL-VSISSEEFVDRVVESS-----PSLLLVVHDSLFVLAGIKEK-----Y-DTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~-----~~~V~gVD~S~~ML~~Ar~k-----~-~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
+..|| ||||||-+....++.+ ..+|+||+-++......+++ . ..|+++++|++++..+ +.+|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 45688 9999999987665543 27999999998765444322 2 4699999999998753 599999966
Q ss_pred -cc--CcCCCCHHHHHHHHHHhcCCCCEEE
Q 023971 185 -FL--PAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 185 -f~--l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
.+ .-|- --.++|....|.|||||.++
T Consensus 266 lLGsfg~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccc-cCHHHHHHHHhhcCCCCEEe
Confidence 11 2222 23367888899999998764
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.20 E-value=3.6e-06 Score=75.13 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--------------CCC
Q 023971 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--------------YDT 160 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--------------~~~ 160 (274)
.|.....-..++++.+++.+++..+ ||||.|......+-..+ .+.+||++.+.--+.|++. ...
T Consensus 23 YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 102 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK 102 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E
T ss_pred eeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3555666788899999999999999 99999998776654434 5799999998866665531 224
Q ss_pred ceEEEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 161 VKCWQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 161 v~~~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++.+||..+-++. ...-|+|+++-.. +.++....+.+++.-||||-++|-+.
T Consensus 103 v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 103 VELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp EEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 67788887654421 2457999998332 33466788999999999998876543
No 211
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.20 E-value=2e-05 Score=70.45 Aligned_cols=127 Identities=14% Similarity=0.218 Sum_probs=86.5
Q ss_pred EE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCCCCccEEEec-ccCcC
Q 023971 120 VL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKWGPLDVVFLY-FLPAM 189 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~ 189 (274)
|. |||-=|.+..+|.+++. .+++++|++++-|+.|++.. ..++++.||.-+ ++ ..+..|.|+++ .+=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 56 89999999999999987 78999999999999999763 248999999754 43 23347888766 44322
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE--EEecCCeEEEEE
Q 023971 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN--FVDESGFYLVVL 267 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~--~~d~~~~yl~v~ 267 (274)
..+.+.+....++...+|++. |... ...|++++.+.||.++. ...+++.|+-|+
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILq-P~~~--------------------~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi 135 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQ-PNTH--------------------AYELRRWLYENGFEIIDEDLVEENGRFYEII 135 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEE-ESS---------------------HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEe-CCCC--------------------hHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence 357788777888877788876 4421 46899999999997665 344555555555
Q ss_pred EecC
Q 023971 268 KFSK 271 (274)
Q Consensus 268 ~~~~ 271 (274)
..++
T Consensus 136 ~~~~ 139 (205)
T PF04816_consen 136 VAER 139 (205)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 212
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.1e-06 Score=72.46 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=67.4
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEec--ccCc
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLY--FLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~--f~l~ 188 (274)
+|..++ +|||+|.+.....-.++..|+|+|+.++-|+.++++.. ++.++|+|+.++-+..+.||.++++ |+-.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTK 127 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCcc
Confidence 567888 99999999855544445799999999999999998754 4689999999999899999999999 7755
Q ss_pred CC-CCHHHHHHHHHHhc
Q 023971 189 MP-FPLDQVFETLANRC 204 (274)
Q Consensus 189 ~~-~d~~~al~el~RvL 204 (274)
+- .|- +++.....+.
T Consensus 128 ~~~aDm-~fv~~al~~~ 143 (185)
T KOG3420|consen 128 KKGADM-EFVSAALKVA 143 (185)
T ss_pred cccccH-HHHHHHHHHH
Confidence 42 232 3444443444
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.19 E-value=1.4e-05 Score=73.96 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccCCCC-CCCCccEEEe
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIYVPD-KWGPLDVVFL 183 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~LPf-~~~sFD~V~~ 183 (274)
+...+|| ||-|-|..++.+++.. .+|+-||+.+++++.+|+-+| +++++. . +.. ..++||+|++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhccCCcCCEEEE
Confidence 4457999 9999999999988764 499999999999999998543 345543 1 222 2378999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
-.. ...+..+.+.|.|+|||.++.
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 643 235778999999999999998
No 214
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=9.1e-05 Score=65.52 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEEEec--ccC
Q 023971 117 SSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVVFLY--FLP 187 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l 187 (274)
.+-+| ||||+|..+..|+.. ++ ....+.|+++.-++.-++. --.+..+++|...-- ..++.|+++.+ |++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 56799 999999999999876 45 8899999999988885542 334677888876533 34999999988 655
Q ss_pred cC
Q 023971 188 AM 189 (274)
Q Consensus 188 ~~ 189 (274)
.-
T Consensus 123 t~ 124 (209)
T KOG3191|consen 123 TS 124 (209)
T ss_pred CC
Confidence 43
No 215
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.15 E-value=8.3e-06 Score=74.65 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+....+++++.+++.++..|| ||+|+|.++..|++.+ .+|++|+.++.+.+..++++ ++++++.+|+.++...+
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 4556788999999999999999 9999999999999988 69999999999999999975 47999999999987654
Q ss_pred ---CCccEEEecccCcCCCCHHHHHHHHHHhcCC
Q 023971 176 ---GPLDVVFLYFLPAMPFPLDQVFETLANRCSP 206 (274)
Q Consensus 176 ---~sFD~V~~~f~l~~~~d~~~al~el~RvLKP 206 (274)
+.-..|+++- +.+. -...+..+...-+.
T Consensus 93 ~~~~~~~~vv~Nl-Py~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNL-PYNI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEE-TGTG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEe-cccc--hHHHHHHHhhcccc
Confidence 4556677663 3233 23566666664444
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=6.8e-05 Score=67.61 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=119.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCC----CC-CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI----DE-SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLF 149 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~----~~-~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ 149 (274)
...|-+...+ |.......+.......|.+.+++.+.+ .. +.+++ ||+|.|-=+.-|+=..| .+|+-||....
T Consensus 24 l~~Y~~lL~~-wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 24 LEAYVELLLK-WNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred HHHHHHHHHH-hhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 4556666666 998888777766777798888777643 22 57999 99999976666654445 67999999876
Q ss_pred ---HHHHHHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023971 150 ---VLAGIKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 150 ---ML~~Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
.|+.+++. .+|++++++.+|++.-...-||+|++- -+.+....+.-....+|+||.++..... +.
T Consensus 103 k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~~k~~------~~ 172 (215)
T COG0357 103 KIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLAYKGL------AG 172 (215)
T ss_pred HHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee----hccchHHHHHHHHHhcccCCcchhhhHH------hh
Confidence 56666665 468999999999997422229999985 3446677788888899999998763211 11
Q ss_pred HhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEecC
Q 023971 225 RKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKFSK 271 (274)
Q Consensus 225 ~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~~~ 271 (274)
... ..+.++.+...||++..+.. +....+.|+++.+
T Consensus 173 ~~e-----------~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 173 KDE-----------LPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred hhh-----------HHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 111 24566677777886665443 2235677777765
No 217
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.12 E-value=3.4e-05 Score=71.98 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=64.5
Q ss_pred CeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHh-------CCCceEEEeeccCCCCCCCCccEEEeccc
Q 023971 118 SKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEK-------YDTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k-------~~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
++|+ ||||.=-++..+..+ ++ ..|+++|.+++-++.|++- ...++|+.+|+.+++.+-..||+|+.+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 5999 999998777765542 44 6799999999999999763 23579999999998876789999998865
Q ss_pred CcC-CCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAM-PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~-~~d~~~al~el~RvLKPGGrlvIs 213 (274)
... -.+.++++..+.+.++||.++++-
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 542 337889999999999999999985
No 218
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=1.4e-05 Score=71.25 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCc----------HHHHHHHHHh-CCCceEEEeeccCCC
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDS----------LFVLAGIKEK-YDTVKCWQGELIYVP 172 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S----------~~ML~~Ar~k-~~~v~~~~gDae~LP 172 (274)
++|...++++|++|+ +-.|.|.++..+... ++ +.|++.-.. +.|=..+++. +.|++.+-++.-.++
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 566778999999999 999999999998775 56 788877433 3344455544 446666666666666
Q ss_pred CCCCCccEEEec---ccCc--C--CCCHHHHHHHHHHhcCCCCEEEEEc-CC--ChhHHHHHHhhCcccccccCCCHHHH
Q 023971 173 DKWGPLDVVFLY---FLPA--M--PFPLDQVFETLANRCSPGARVVISH-PQ--GREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 173 f~~~sFD~V~~~---f~l~--~--~~d~~~al~el~RvLKPGGrlvIs~-~~--gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
.....|++.-+ ..+| + ....+++.++++++|||||.++|.+ -. |.+. .+.......+....
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~--------~dt~~~~ri~~a~V 189 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL--------SDTITLHRIDPAVV 189 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh--------hhhhhhcccChHHH
Confidence 55666776542 1122 2 3466799999999999999998852 21 1221 11123445667888
Q ss_pred HHHHHhCCCcEeE
Q 023971 243 QKAAGNHCFQIDN 255 (274)
Q Consensus 243 ~~ll~~aGF~~v~ 255 (274)
.+..+++||+...
T Consensus 190 ~a~veaaGFkl~a 202 (238)
T COG4798 190 IAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHhhcceeee
Confidence 8999999997653
No 219
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.11 E-value=2.7e-06 Score=74.47 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccC-CC---CCCCCccEEEe
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIY-VP---DKWGPLDVVFL 183 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~-LP---f~~~sFD~V~~ 183 (274)
-+|.+|| +-||||.++...+.+|..+|+.||.++.-++..+++.. .++.+.+|+.. ++ -....||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3788999 99999999998888887899999999999999987632 36778888543 32 24789999997
Q ss_pred cccCcCCCC-HHHHHHHHH--HhcCCCCEEEEEcCC
Q 023971 184 YFLPAMPFP-LDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 184 ~f~l~~~~d-~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
- -+-.... ..+++..+. ..|+++|.+++-|..
T Consensus 121 D-PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 D-PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred C-CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 6 1111122 367888887 799999999997643
No 220
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.00022 Score=68.49 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=75.6
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC---CCCc
Q 023971 111 AGEIDESSKVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK---WGPL 178 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~---~~sF 178 (274)
.++..+|++|| +|++.|-=+..++.... ..|+|+|.|+.=++..+++. .++.....|+..++.. .+.|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 46889999999 99999977777766542 35699999999888877653 3567788888766532 2369
Q ss_pred cEEE----ec-c-cCcCCC------C----------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 179 DVVF----LY-F-LPAMPF------P----------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 179 D~V~----~~-f-~l~~~~------d----------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|.|. |+ . ++|--+ . ..+.|....+.|||||+|+-++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9998 33 2 232111 1 23677788999999999999753
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.00 E-value=0.00016 Score=67.06 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=61.7
Q ss_pred CeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCC---ceE--EEeec--cCCCCCCCCccEEEecccC
Q 023971 118 SKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDT---VKC--WQGEL--IYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~---v~~--~~gDa--e~LPf~~~sFD~V~~~f~l 187 (274)
.+|| +|||+|.-+-++.+.- . .++++||.|+.|++.++.-..+ ... +..+. +..++. ..|+|++++++
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhh
Confidence 5899 9999998665555432 2 7899999999999998864322 110 11111 112332 23999999887
Q ss_pred cCCCC--HHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 188 AMPFP--LDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 188 ~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
.-..+ ..++++.+.+.+.+ .|||-++..+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 76554 34556666565644 8888655443
No 222
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00016 Score=70.16 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=90.0
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC------C-----------------
Q 023971 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP------S----------------- 139 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~------~----------------- 139 (274)
-.|.|-..++..+. ..-....++...+..++..++ -=||+|++....+-.++ .
T Consensus 162 hkRGyR~~~g~ApL---ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 162 HKRGYRVYDGPAPL---KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhccccccCCCCCc---hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 34555554443222 222344667778888888888 99999998765544331 0
Q ss_pred -----------------cEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--ccCcCCCC--
Q 023971 140 -----------------LLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--FLPAMPFP-- 192 (274)
Q Consensus 140 -----------------~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~~d-- 192 (274)
.++|+|+++.||+.|+.+. ..++|.++|+..|+..-+.+|+|+|| |+.|....
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence 3779999999999999763 24799999999998655899999999 89887644
Q ss_pred HH----HHHHHHHHhcCCCCEEEEEcC
Q 023971 193 LD----QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 193 ~~----~al~el~RvLKPGGrlvIs~~ 215 (274)
.+ +..+.+.|.++-.++.+++..
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 11 122355577777778888644
No 223
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=8.2e-05 Score=73.37 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC--
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW-- 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~-- 175 (274)
-...+++.++..++++|| +=||.|.++..|+++. .+|+||++++++++.|++. ..|+.|..+|++++....
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 445667777888889999 9999999999998665 5999999999999999975 346899999999987665
Q ss_pred -CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH
Q 023971 176 -GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQK 223 (274)
Q Consensus 176 -~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~ 223 (274)
..+|.|+.- -+|--.+ +++++.+. .++|-..++|| .+..++.+
T Consensus 360 ~~~~d~VvvD-PPR~G~~-~~~lk~l~-~~~p~~IvYVS--CNP~TlaR 403 (432)
T COG2265 360 GYKPDVVVVD-PPRAGAD-REVLKQLA-KLKPKRIVYVS--CNPATLAR 403 (432)
T ss_pred cCCCCEEEEC-CCCCCCC-HHHHHHHH-hcCCCcEEEEe--CCHHHHHH
Confidence 588999975 4444323 24444443 37888999997 33444443
No 224
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.95 E-value=2.8e-05 Score=69.28 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=66.7
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCCCC
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~~s 177 (274)
.++.+. +.+++.|| +-||-|.++..+++.+. ..|+|+|+.|.-++.+++. .. .+...++|+.+++. .+.
T Consensus 93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~ 169 (200)
T PF02475_consen 93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK 169 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-
T ss_pred HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc
Confidence 345433 67899999 99999999999887444 6899999999977776653 33 36889999999876 899
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
||-|+++. +. .-.+.+.++.+.+|+||.+.
T Consensus 170 ~drvim~l-p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNL-PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE---TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECC-hH---HHHHHHHHHHHHhcCCcEEE
Confidence 99999974 22 22457777888899999764
No 225
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.00014 Score=64.35 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=81.0
Q ss_pred HHHHHHhCCC--CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CC-
Q 023971 105 IDQIISAGEI--DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PD- 173 (274)
Q Consensus 105 ~~~ll~~~~~--~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf- 173 (274)
+..+...+.. -+|.++| +-+|||.++...+.++...++.||.+..-..+.++.. .+.+++..|+... +-
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 3344555543 4788999 9999999999888888789999999999999999863 3467888898843 11
Q ss_pred -CCCCccEEEec--ccCcCCCCHHHHHHH--HHHhcCCCCEEEEEcC
Q 023971 174 -KWGPLDVVFLY--FLPAMPFPLDQVFET--LANRCSPGARVVISHP 215 (274)
Q Consensus 174 -~~~sFD~V~~~--f~l~~~~d~~~al~e--l~RvLKPGGrlvIs~~ 215 (274)
..++||+|+.= |.-.. .+...++.. -..+|+|||.+++-+.
T Consensus 110 ~~~~~FDlVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCcccEEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22359999976 44222 244555555 4678999999999654
No 226
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.88 E-value=6.5e-05 Score=74.53 Aligned_cols=110 Identities=11% Similarity=0.153 Sum_probs=83.2
Q ss_pred HHHHHHHHhC-----CCCCCC-eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCC
Q 023971 103 QRIDQIISAG-----EIDESS-KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYV 171 (274)
Q Consensus 103 ~w~~~ll~~~-----~~~~~~-rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~L 171 (274)
.|.-+.+... .+.+-. ++| +|||-=.+...+.+.+-..|+-+|.|+--++.+..++ +...+.+.|+..+
T Consensus 29 ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 29 EWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL 108 (482)
T ss_pred HHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc
Confidence 4655554432 235556 899 9999999988887766579999999999998888765 4578899999999
Q ss_pred CCCCCCccEEEecccCc----------CCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 172 PDKWGPLDVVFLYFLPA----------MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~----------~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.|++++||+|+-=-.+. |..-...-+.|++|+|+|||+++.
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 99999999998432221 112233567899999999999765
No 227
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.88 E-value=7e-05 Score=71.81 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEec---c
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLY---F 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~---f 185 (274)
.+..|| ||||+|.+....+..|..+|.||+-| +|-+.|++-.. .+..+.|-+|++.+ .+..|++++- +
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 345678 99999999988888777899999987 59999987542 36788899999765 4789999966 3
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+-|- .--+-.-...|.|||.|++.=+
T Consensus 255 mL~NE-RMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLVNE-RMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhH-HHHHHHHHHHhhcCCCCcccCc
Confidence 33332 1113333456999999998653
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.87 E-value=0.00011 Score=70.53 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=70.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+.+|.+|| |||+||-.+..|++++. +|+|||..+ |+..-...++|+.+++|.....-..+.+|.|+|= ....
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD----mve~ 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD----MVEK 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe----cccC
Confidence 46889999 99999999999999884 999999554 4443455678999999987654336899999985 3458
Q ss_pred HHHHHHHHHHhcCCC
Q 023971 193 LDQVFETLANRCSPG 207 (274)
Q Consensus 193 ~~~al~el~RvLKPG 207 (274)
|.++.+-|.+.|..|
T Consensus 282 P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 PARVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999999887
No 229
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=6.1e-05 Score=71.39 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=105.1
Q ss_pred cccccccccccCCccchhHHHHHHHHHHhCC---C-----CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023971 83 FTEIDWSFLDSDELNFKEHIQRIDQIISAGE---I-----DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 83 ~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~---~-----~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
.+.|+|+.-... +..+.-+.+++.+. + +..-+|| =|||+|.++-.|+..|. .+-|-++|--||=.
T Consensus 114 ~i~RdwssE~~~-----ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 114 QICRDWSSEGQR-----ERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC 187 (369)
T ss_pred HHHHHhhhccch-----hhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH
Confidence 578889874332 22223334444331 1 2245899 99999999999999887 77788999999855
Q ss_pred HH-------Hh-----C---------------------CC------------ceEEEeeccCCC---CCCCCccEEEecc
Q 023971 154 IK-------EK-----Y---------------------DT------------VKCWQGELIYVP---DKWGPLDVVFLYF 185 (274)
Q Consensus 154 Ar-------~k-----~---------------------~~------------v~~~~gDae~LP---f~~~sFD~V~~~f 185 (274)
.. .+ | |+ ...+.||..+.- -..++||+|+.+|
T Consensus 188 S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf 267 (369)
T KOG2798|consen 188 SSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF 267 (369)
T ss_pred HHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE
Confidence 32 11 1 11 122557776542 2235899999888
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.+---.+.-+-+..+..+|||||.-+=.-|.--+. +..+..-...++. ++-+++..+++..||++...+.-
T Consensus 268 FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF-~d~~g~~~~~siE--ls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 268 FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHF-EDTHGVENEMSIE--LSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EeechHHHHHHHHHHHHhccCCcEEEeccceeeec-cCCCCCccccccc--ccHHHHHHHHHhcCcEEEEeeee
Confidence 87666666788899999999999886532210000 0000000011222 56799999999999998876643
No 230
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.83 E-value=4.9e-05 Score=72.75 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD 173 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf 173 (274)
........+++.++..++ +|| +-||+|.++..|++.. .+|+|||.+++|++.|++. ..+++|+.++++++..
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 444566777888887766 899 9999999999998766 5999999999999999965 4578999998876532
Q ss_pred ----------------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 174 ----------------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ----------------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
....+|+|+.- -+|--.+ +.+++.+. ++.=.++|+
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilD-PPR~G~~-~~~~~~~~---~~~~ivYvS 309 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILD-PPRAGLD-EKVIELIK---KLKRIVYVS 309 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE----TT-SC-HHHHHHHH---HSSEEEEEE
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEc-CCCCCch-HHHHHHHh---cCCeEEEEE
Confidence 12368888754 3333323 23444432 344455665
No 231
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.78 E-value=1.1e-05 Score=72.83 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=76.8
Q ss_pred HHHHHHhCCC---CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023971 105 IDQIISAGEI---DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 105 ~~~ll~~~~~---~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
-++++..-+. .+..++| +|+|.|+++...+... .+|.|-++|..|..+.++|--++- +.. +.-..+-.||+
T Consensus 98 F~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~ynVl---~~~-ew~~t~~k~dl 172 (288)
T KOG3987|consen 98 FRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYNVL---TEI-EWLQTDVKLDL 172 (288)
T ss_pred HHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCcee---eeh-hhhhcCceeeh
Confidence 3445444333 2346899 9999999998885433 589999999999999988744431 111 11223456999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCC-CCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSP-GARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKP-GGrlvIs 213 (274)
|.|--.+.-+.+|-+.++.++-||+| .||++++
T Consensus 173 i~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 173 ILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 99887777778999999999999999 9999884
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.76 E-value=0.00018 Score=69.67 Aligned_cols=92 Identities=7% Similarity=-0.037 Sum_probs=74.6
Q ss_pred CeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCccEEEecccCc
Q 023971 118 SKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPLDVVFLYFLPA 188 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sFD~V~~~f~l~ 188 (274)
-+|| +-||||.++.+++.+. ...|+++|.+++-++.++++. .++++.++|+..+-. ....||+|++-= +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 4899 9999999999988773 378999999999999998753 357889999987642 236799998752 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+...+..+.+.+++||.|+|+
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEE
Confidence 24567888999999999999996
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.75 E-value=0.00013 Score=72.98 Aligned_cols=71 Identities=7% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC---------CcEEEEeCcHHHHHHHHHhC---C--CceEEEeeccCC-----CCCC
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSP---------SLLLVVHDSLFVLAGIKEKY---D--TVKCWQGELIYV-----PDKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~---------~~V~gVD~S~~ML~~Ar~k~---~--~v~~~~gDae~L-----Pf~~ 175 (274)
.+.+|| .|||||.++..+++..+ ..++|+|+++..++.|+... . ++....+|...- ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345899 99999999887765421 47899999999999998763 2 234444443221 1123
Q ss_pred CCccEEEec--cc
Q 023971 176 GPLDVVFLY--FL 186 (274)
Q Consensus 176 ~sFD~V~~~--f~ 186 (274)
+.||+|+.| |+
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 589999999 55
No 234
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=97.72 E-value=0.00028 Score=67.28 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=73.3
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeecc-----CC-CC-CCCCcc
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELI-----YV-PD-KWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-----~L-Pf-~~~sFD 179 (274)
+...+.++++|| +|||+ |.++..+++... .+|+++|.++++++.+++... ..++...-+ .+ .+ ....+|
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 456778899999 99998 888888887654 469999999999999988643 333321111 11 11 234699
Q ss_pred EEEecccC---------------cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLP---------------AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l---------------~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ....|...++.++.+.|+|||++++.
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 99875432 12245577899999999999999985
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00064 Score=60.95 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-------
Q 023971 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------- 172 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------- 172 (274)
++.++.+.-. +.++.+|+ +|+-.|--+..++++. + +.|+|||+-+- +-.+++.++|+|+.+-+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------KPIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------ccCCCceEEeeeccCccHHHHHHH
Confidence 4445554443 46789999 9999999999888874 3 66999999873 33567999999997644
Q ss_pred -CCCCCccEEEecccC-----cCCCC-----H-HHHHHHHHHhcCCCCEEEEEcCCChh
Q 023971 173 -DKWGPLDVVFLYFLP-----AMPFP-----L-DQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 173 -f~~~sFD~V~~~f~l-----~~~~d-----~-~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
+....+|+|++=..+ +..+. + ..|+.-..++|+|||.+++-..+|..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 334568999966444 22211 1 23444456799999999997776653
No 236
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.00053 Score=62.47 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023971 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
+.-+-+..+++..+ .+++| ||.=||.-+..++..-| ++|+++|+.++-.+.+.+.+ ..+++++|++.+
T Consensus 60 d~g~fl~~li~~~~---ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 60 DKGQFLQMLIRLLN---AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHHhC---CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 33345666666553 46899 99999987777766644 89999999999999987653 247899998855
Q ss_pred -CC-----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023971 171 -VP-----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 171 -LP-----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+ .+.++||.||.-..=.+. ..-+.++.+.+|+||.|++-.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~nY---~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKDNY---SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchHHH---HHHHHHHHhhcccccEEEEec
Confidence 22 246899999987544333 367888899999999999943
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00046 Score=62.70 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHh---CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCC-C-
Q 023971 103 QRIDQIISA---GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYV-P- 172 (274)
Q Consensus 103 ~w~~~ll~~---~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~L-P- 172 (274)
.|-+.++.+ .-...|.||| ||-|-|...-.+-++.|.+=+.++.-++.+++.|+-- .+|..+.|-+|+. |
T Consensus 85 ~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 85 RWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 355444332 2346788999 9999998777776666666677899999999998753 3677778877773 2
Q ss_pred CCCCCccEEEec-ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 173 DKWGPLDVVFLY-FLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~-f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..|+.||.|..- |+.. -+|.....+.+.|.|||||.+-.....
T Consensus 165 L~d~~FDGI~yDTy~e~-yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL-YEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred ccccCcceeEeechhhH-HHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 467889999854 4444 368889999999999999999775443
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0013 Score=60.30 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=107.5
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-EeeccCCCC--CCCCc
Q 023971 104 RIDQIISAGEID-ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELIYVPD--KWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae~LPf--~~~sF 178 (274)
++..+++..++. +|..+| ||.-||-|+..+++++..+|+|||...+.|.---+.-|.+... .-++.++-. -.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 567778887775 456778 9999999999999998789999999998887766666665443 345554431 12378
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccc---cCCCHHHHHHHHHhCCCcEe
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVS---DLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~---~fps~~eL~~ll~~aGF~~v 254 (274)
|.++|-..+. .+..+|..+..+++|||-++.. .|+-...-+... ...+..+ .-.-.+++.+.+++.||++.
T Consensus 146 d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 146 DLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred CeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 8999875542 5689999999999999998873 332111101111 0111111 11235678889999999887
Q ss_pred EEEecC-----C--eEEEEEEec
Q 023971 255 NFVDES-----G--FYLVVLKFS 270 (274)
Q Consensus 255 ~~~d~~-----~--~yl~v~~~~ 270 (274)
....-+ + -|++-++++
T Consensus 221 gl~~Spi~G~~GNiE~l~~~~k~ 243 (245)
T COG1189 221 GLIKSPIKGGKGNIEFLLLLKKS 243 (245)
T ss_pred eeEccCccCCCCcEeeeeeeecc
Confidence 665422 1 366666554
No 239
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.48 E-value=0.0008 Score=62.57 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhCCCC-CCCeEE-EEcCch--HHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC---CC--ceEEEeec
Q 023971 100 EHIQRIDQIISAGEID-ESSKVL-VSISSE--EFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY---DT--VKCWQGEL 168 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~-~~~rVL-vGcGTG--~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~---~~--v~~~~gDa 168 (274)
+.+.++++.++.+.-. .=...| ||||-= ..+-.++++ .| ++|+=||..+--++.++... ++ ..+++||+
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~ 130 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence 3344556666654333 235689 999952 223334443 56 89999999999999888753 44 78999998
Q ss_pred cCCC------------CCCCCccEEEecccCcCCC---CHHHHHHHHHHhcCCCCEEEEEcCCChh---HHHHHHhhCcc
Q 023971 169 IYVP------------DKWGPLDVVFLYFLPAMPF---PLDQVFETLANRCSPGARVVISHPQGRE---ALQKQRKQFPD 230 (274)
Q Consensus 169 e~LP------------f~~~sFD~V~~~f~l~~~~---d~~~al~el~RvLKPGGrlvIs~~~gr~---~l~~~~~~~~~ 230 (274)
.+.. ..+.++ +|.+...+|++. ++.++++.+...|-||..|+|+|..... ...+....|..
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred CCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 6622 112333 445555777764 6889999999999999999999864322 22233333322
Q ss_pred -cccccCCCHHHHHHHHHhCCCcEeE
Q 023971 231 -VIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 231 -~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
.....+-+.+|+.+++. ||+.+.
T Consensus 210 ~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 AGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CCS----B-HHHHHHCCT--TSEE-T
T ss_pred CCCCceecCHHHHHHHcC--CCccCC
Confidence 23345778999999887 887653
No 240
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.48 E-value=0.00056 Score=65.57 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=68.8
Q ss_pred HHHHhCCCCCCCeEE-EEcC-chHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEe
Q 023971 107 QIISAGEIDESSKVL-VSIS-SEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcG-TG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++..++.||++|+ +|+| -|.++..+++. + .+|+++|.|++=++.|++--.+.-..-.|...+..-.+.||+|+.
T Consensus 157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 345557899999999 7777 35777777774 5 799999999999999987644332221233233322234999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
... ...+....+.||+||++++.
T Consensus 236 tv~-------~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 236 TVG-------PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CCC-------hhhHHHHHHHHhcCCEEEEE
Confidence 644 24556666679999999983
No 241
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.45 E-value=0.001 Score=62.16 Aligned_cols=98 Identities=13% Similarity=0.025 Sum_probs=65.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEE---EeeccCCCCCCCCccEEE
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCW---QGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~---~gDae~LPf~~~sFD~V~ 182 (274)
+......++++|| .|||+ |.++..+++... .+|+++|.+++-++.|++ +..-..+ ..+..++....+.+|+|+
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 4445566789999 88765 556666666533 479999999999999876 3321222 122333332234699998
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-..+- ...+....+.|+|||++++.
T Consensus 241 d~~G~------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGH------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 76542 24677888899999999984
No 242
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.41 E-value=0.0012 Score=62.91 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEE--e-ec-cCC-CCCC-CCccEEEec
Q 023971 114 IDESSKVL-VSISS-EEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQ--G-EL-IYV-PDKW-GPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~--g-Da-e~L-Pf~~-~sFD~V~~~ 184 (274)
..++.+|+ +|||+ |-++..+++.. ..+|+++|.+++-|+.|++....-.+.. . +. +.+ -... ..+|+|+=+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 34445999 99999 77777777764 4899999999999999999654321111 1 11 111 1112 369999977
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+ -..++..+.+.+||||++++.
T Consensus 246 ~G------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 246 VG------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CC------CHHHHHHHHHHhcCCCEEEEE
Confidence 66 135889999999999999983
No 243
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.40 E-value=0.00015 Score=62.83 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=48.0
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CC---CceEEEeeccCCC--CCCCC-ccEEEec
Q 023971 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YD---TVKCWQGELIYVP--DKWGP-LDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~---~v~~~~gDae~LP--f~~~s-FD~V~~~ 184 (274)
.|+ +.||.|-.+..+++... +|+|||+++..++.|+.. |. ++.|++||+.++. +.... ||+||++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 578 99999999999998874 999999999999999976 43 6899999998864 22222 8999976
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.40 E-value=0.00094 Score=64.81 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccCC-CCCCCCcc
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIYV-PDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~L-Pf~~~sFD 179 (274)
+...+|| +|-|-|--.+.|.+... .+|+-||+.|+|++.+++. -|.++.+..|+.+. --..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4557899 99999988888876532 8999999999999999843 14578888888774 34457999
Q ss_pred EEEeccc-CcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFL-PAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~-l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
+|+.-+- ++++.- -.+...-+.|.|+++|++|+.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 9997642 333211 125666778999999999994
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.38 E-value=0.0022 Score=53.26 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHH-----hCCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccCCCCCCCCc
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVE-----SSPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~-----~~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~LPf~~~sF 178 (274)
...+..+|+ +|||.|.++..|+. ....+|+|||.++.+++.|.++. .++.+++++..+.+. ....
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence 346677999 99999999999988 42379999999999998888652 235666776654432 4556
Q ss_pred cEEEecccCcCCCCHH-HHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLD-QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~-~al~el~RvLKPGGrlvIs 213 (274)
|+++ ++|-+.|+- .+++-+.+ |+-++++.
T Consensus 101 ~~~v---gLHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 101 DILV---GLHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred eEEE---EeecccchHHHHHHHHHH---cCCCEEEE
Confidence 6666 678887776 44444434 77666553
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0031 Score=57.22 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=92.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEec-c
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLY-F 185 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~-f 185 (274)
..+.++. |||--+.+..+|.+.++ ..++++|++++-++.|++.++ .++..+||.-..-..+..+|+|+++ .
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3456788 99999999999999888 899999999999999998754 3677788883332345589999876 3
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE--EecCCeE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF--VDESGFY 263 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~--~d~~~~y 263 (274)
+=. -..+.+++-...|+.==++++. |... ..+|++++.+.+|++..- ..+++++
T Consensus 95 GG~---lI~~ILee~~~~l~~~~rlILQ-Pn~~--------------------~~~LR~~L~~~~~~I~~E~ileE~~ki 150 (226)
T COG2384 95 GGT---LIREILEEGKEKLKGVERLILQ-PNIH--------------------TYELREWLSANSYEIKAETILEEDGKI 150 (226)
T ss_pred cHH---HHHHHHHHhhhhhcCcceEEEC-CCCC--------------------HHHHHHHHHhCCceeeeeeeecccCeE
Confidence 322 2357788777777544467664 4322 368999999999977653 3344444
Q ss_pred EEEEE
Q 023971 264 LVVLK 268 (274)
Q Consensus 264 l~v~~ 268 (274)
+-|+.
T Consensus 151 YEIlv 155 (226)
T COG2384 151 YEILV 155 (226)
T ss_pred EEEEE
Confidence 44433
No 247
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.31 E-value=0.0023 Score=64.47 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=66.5
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc-----------CCCC------
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI-----------YVPD------ 173 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-----------~LPf------ 173 (274)
+..++++|+ +|||+ |-.+...++.....|+++|.+++-+++|++- +.+++.-|.. ++..
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeEEEeccccccccccchhhhcchhHHHHH
Confidence 356789999 99999 6666666554224899999999999999873 2333221111 1111
Q ss_pred ----C--CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 174 ----K--WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ----~--~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. -..+|+|+.+.+.-.-..|.-+.+++.+.+||||+++..
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 1 146999998865433223444469999999999999873
No 248
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=3.9e-05 Score=66.30 Aligned_cols=94 Identities=11% Similarity=-0.020 Sum_probs=58.7
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc---cccc
Q 023971 159 DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP---DVIV 233 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~---~~si 233 (274)
+.+.+++-.-.+.+|.++|.|+|.+..++-+. ..-..+++|.+|+|||||.|-|+-|... ...+.+.... ..-.
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~-f~~~~Y~~~vqvggpgp 107 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK-FLDWLYQHDVQVGGPGP 107 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc-hhHHHHhhhhhccCCCC
Confidence 34555443345679999999999988665543 2445889999999999999999866543 2333322210 0011
Q ss_pred ccCC------CHHHHHHHHHhCCCcE
Q 023971 234 SDLP------DQMTLQKAAGNHCFQI 253 (274)
Q Consensus 234 ~~fp------s~~eL~~ll~~aGF~~ 253 (274)
.+.| +..++.+.+..+||.+
T Consensus 108 ndhP~~r~v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 108 NDHPLHRIVKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhee
Confidence 1122 4556666777777744
No 249
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.0025 Score=61.19 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCCCCCccEEEecccC
Q 023971 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+|++|| .=+|-|.++..+++.+...|+|+|+.|.-++-.++. ..+ +..++||+.+++..-+.+|-|+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4599999 999999999999888763499999999988887765 233 788999999998877999999998543
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-.+.+....+.+|+||.+..-
T Consensus 267 ----~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 267 ----SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred ----cchhhHHHHHHHhhcCcEEEEE
Confidence 2235566666678999998774
No 250
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.17 E-value=0.0031 Score=59.21 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=61.5
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHh-C-CCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023971 112 GEIDESSKVL-VSISS-EEFVDRVVES-S-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~-~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+.+.++++|| +|||+ |.++..++++ . ..+|+++|.+++-++.|++ .... .. .+++. ++..+|+|+=..+-
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-~~---~~~~~-~~~g~d~viD~~G~ 232 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-YL---IDDIP-EDLAVDHAFECVGG 232 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-ee---hhhhh-hccCCcEEEECCCC
Confidence 3567899999 99987 5555565553 3 3689999999998888875 2221 11 11122 12248999865442
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. .-..++.+..+.|++||++++
T Consensus 233 ~---~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 233 R---GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C---ccHHHHHHHHHhCcCCcEEEE
Confidence 1 124578888899999999987
No 251
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.11 E-value=0.0043 Score=60.51 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=56.8
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHH--------------------------------------HHHHHHHhcCCC
Q 023971 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQ--------------------------------------VFETLANRCSPG 207 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~--------------------------------------al~el~RvLKPG 207 (274)
|....--|+.++.+.+++++.+||.....+ .|+-=++-|+||
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpG 230 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRG 230 (386)
T ss_pred ccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444478899999999999999763111 111124569999
Q ss_pred CEEEEEcCCCh--------h----HHHH-HHhhCcc---------------cccccCCCHHHHHHHHHhCC-CcEeEEEe
Q 023971 208 ARVVISHPQGR--------E----ALQK-QRKQFPD---------------VIVSDLPDQMTLQKAAGNHC-FQIDNFVD 258 (274)
Q Consensus 208 GrlvIs~~~gr--------~----~l~~-~~~~~~~---------------~si~~fps~~eL~~ll~~aG-F~~v~~~d 258 (274)
|+++++- .|| . .+.. +...|.+ ......|+.+|+++..++.| |.+...+.
T Consensus 231 G~mvl~~-~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 231 GAMFLVC-LGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred cEEEEEE-ecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEE
Confidence 9999962 111 0 1111 1112211 13467899999999999998 66655543
No 252
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.09 E-value=0.00082 Score=62.01 Aligned_cols=122 Identities=19% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHH----HHHHH
Q 023971 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLF----VLAGI 154 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~----ML~~A 154 (274)
.+..|-|..+-+.+.- -+---++.+.+++|++|| +|+++|........- +| +-|.||++|+. .+..|
T Consensus 128 kvEyRVWnPfrSKLAA------~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA 201 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAA------GILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA 201 (317)
T ss_pred cEEEEEeChHHHHHHH------HhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh
Confidence 3566778764332211 123346677899999999 999999988777664 67 89999999974 44555
Q ss_pred HHhCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHH-HHHHHhcCCCCEEEEE
Q 023971 155 KEKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVF-ETLANRCSPGARVVIS 213 (274)
Q Consensus 155 r~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al-~el~RvLKPGGrlvIs 213 (274)
+|.+|+--+.-||..-- ..-..+|+||+-. .+ +|..+++ -+..--||+||.++|+
T Consensus 202 -kkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv-aq--pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 202 -KKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV-AQ--PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred -hccCCceeeeccCCCchheeeeeeeEEEEeccC-CC--chhhhhhhhhhhhhhccCCeEEEE
Confidence 45567766777775421 1124789988652 22 2333333 3566789999999995
No 253
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.05 E-value=0.0062 Score=58.24 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCC-ceEEEee---ccCC------CC
Q 023971 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGE---LIYV------PD 173 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gD---ae~L------Pf 173 (274)
...+..+++.|++|| +|+|+ |-++-..++. +..+|+.+|+++.-|+.||+ +.. +...... .+++ -.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhc
Confidence 455668999999999 99998 5444444554 44899999999999999998 432 1111111 1110 02
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+..+|++|-..+.+.. .+.+ ...||+||.+++.
T Consensus 239 g~~~~d~~~dCsG~~~~--~~aa----i~a~r~gGt~vlv 272 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAEVT--IRAA----IKATRSGGTVVLV 272 (354)
T ss_pred cccCCCeEEEccCchHH--HHHH----HHHhccCCEEEEe
Confidence 23459999977776543 3444 4469999998874
No 254
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.04 E-value=0.0078 Score=54.94 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=65.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC------CCCCCCccEE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV------PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L------Pf~~~sFD~V 181 (274)
+...+.++++|| .|+|. |.++..+++....+|++++.++++.+.+++ +. +..+..+-+.. ......+|+|
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LG-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hC-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 345678899999 87763 677777777543579999999999999865 32 22222111110 1234679998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+. ...++++.+.|++||+++..
T Consensus 237 id~~g~------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDFVGT------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 865332 46788999999999999874
No 255
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.03 E-value=0.0019 Score=60.21 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=76.4
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHh---C--CCceEEEeeccCC-C-CCCCCccE
Q 023971 111 AGEIDESSKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEK---Y--DTVKCWQGELIYV-P-DKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k---~--~~v~~~~gDae~L-P-f~~~sFD~ 180 (274)
.+...++++|| +|+|.|-=+..++... .+.|+|+|+++.-++..++. . .++.....|+..+ + .....||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 46788999999 9999998877777763 38999999999988887754 3 3566777888876 2 23346999
Q ss_pred EEe----c-c-cCcCCCC----------------HHHHHHHHHHhc----CCCCEEEEEc
Q 023971 181 VFL----Y-F-LPAMPFP----------------LDQVFETLANRC----SPGARVVISH 214 (274)
Q Consensus 181 V~~----~-f-~l~~~~d----------------~~~al~el~RvL----KPGGrlvIs~ 214 (274)
|.+ + . .++--++ ..+.|+..++.+ ||||++|-++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 983 2 1 2332222 135678889999 9999999864
No 256
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.01 E-value=0.0019 Score=52.56 Aligned_cols=50 Identities=8% Similarity=0.002 Sum_probs=41.5
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeec
Q 023971 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGEL 168 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDa 168 (274)
.|| ||||+|.++..+++.++ .+|+++|++++|.+.++++. +++.++++.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 378 99999999999988877 68999999999999988763 4567776554
No 257
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.00 E-value=0.0035 Score=59.41 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCC----
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPD---- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf---- 173 (274)
-++.+++.+.+.++..++ .=||.|--+..+++..+ ++|+|+|.++.+++.|+++.. ++.+++++..+++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 367888899989999999 99999999888888744 899999999999999998642 58888988877541
Q ss_pred -CCCCccEEEecccC--cCCCCHHHHHH
Q 023971 174 -KWGPLDVVFLYFLP--AMPFPLDQVFE 198 (274)
Q Consensus 174 -~~~sFD~V~~~f~l--~~~~d~~~al~ 198 (274)
..+++|.|++..+. ..+.++++.|.
T Consensus 88 ~~~~~vDgIl~DLGvSS~Qld~~~RGFS 115 (305)
T TIGR00006 88 LLVTKIDGILVDLGVSSPQLDDPERGFS 115 (305)
T ss_pred cCCCcccEEEEeccCCHhhcCCCCCCCc
Confidence 33679999987654 33457777776
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.93 E-value=0.0069 Score=51.30 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=70.7
Q ss_pred cEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC--CCCCccEEEecccCcCCC------CHH---HHHHHHHH
Q 023971 140 LLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD--KWGPLDVVFLYFLPAMPF------PLD---QVFETLAN 202 (274)
Q Consensus 140 ~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf--~~~sFD~V~~~f~l~~~~------d~~---~al~el~R 202 (274)
+|.|.|+=++-|+..+++. .+++++..+=+++.. +.+++|+|+.|++.---. .++ .|++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5899999999999999874 248888877777653 225899999995532212 233 78999999
Q ss_pred hcCCCCEEEEE----cCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC----CeEEEEEEe
Q 023971 203 RCSPGARVVIS----HPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES----GFYLVVLKF 269 (274)
Q Consensus 203 vLKPGGrlvIs----~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~----~~yl~v~~~ 269 (274)
.|+|||+++|. |+.|.. +. .+ ..++.+-+.+..|++..+.--+ .-++++++|
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~e---E~-~a-----------v~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKE---ES-EA-----------VEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHH---HH-HH-----------HHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred hhccCCEEEEEEeCCCCCCHH---HH-HH-----------HHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 99999999884 443322 11 11 1233444455678887776532 335666554
No 259
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.00081 Score=67.33 Aligned_cols=62 Identities=8% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCC
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYV 171 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~L 171 (274)
=+.+++..+..+| |+||||.+...+++.. .+|+||.++++-++-|++.. .|.+|++|-+|++
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 3456888888888 9999999999997754 69999999999999998752 3689999988875
No 260
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.84 E-value=0.00027 Score=55.21 Aligned_cols=92 Identities=22% Similarity=0.167 Sum_probs=42.3
Q ss_pred E-EEcCchHHHHHHHHhCC----CcEEEEeCcH---HHHHHHHH-hC-CCceEEEeeccCC-C-CCCCCccEEEecccCc
Q 023971 121 L-VSISSEEFVDRVVESSP----SLLLVVHDSL---FVLAGIKE-KY-DTVKCWQGELIYV-P-DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~----~~V~gVD~S~---~ML~~Ar~-k~-~~v~~~~gDae~L-P-f~~~sFD~V~~~f~l~ 188 (274)
| |||..|..+..+++..+ .++++||..+ ..-+..++ .+ .++++++||..+. + +.++++|+|++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 5 78889988877765421 3799999999 44444443 23 3589999998653 2 2258999999764 33
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
........++.+.+.|+|||.+++-
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3345567888899999999988763
No 261
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.74 E-value=0.039 Score=48.13 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=62.1
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEEEecc
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVVFLYF 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V~~~f 185 (274)
.+.++++|| .|+|+ |..+..+++....+|++++.+++..+.+++... ...+...-... ....+.+|+|+.+.
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA-DHVIDYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-ceeccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 347899999 99986 666666666533699999999998888865421 11111110011 11246799999654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- ...+..+.+.|+++|+++..
T Consensus 210 ~~------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 210 GG------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CC------HHHHHHHHHhcccCCEEEEE
Confidence 32 14577778889999999974
No 262
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.74 E-value=0.019 Score=54.00 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---ec----cCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---EL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---Da----e~LPf~~~sF 178 (274)
.....+.++++|| .|||+ |.++..+++... .+|+++|.+++-++.+++ +..-.++.. |. .++. ....+
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~i~~~~-~~~g~ 246 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGATHTVNSSGTDPVEAIRALT-GGFGA 246 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEEcCCCcCHHHHHHHHh-CCCCC
Confidence 4446788999999 88765 555666666533 369999999999999865 332222211 11 1111 22468
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-..+- ..++.+..+.|++||++++.
T Consensus 247 d~vid~~g~------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 247 DVVIDAVGR------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CEEEECCCC------HHHHHHHHHHhccCCEEEEE
Confidence 999855432 24677788899999999973
No 263
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.71 E-value=0.013 Score=55.37 Aligned_cols=98 Identities=15% Similarity=0.020 Sum_probs=63.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~ 180 (274)
.+...+.++++|| .|+|. |.++..+++... .+|+++|.+++-++.|++ +....++..+-++ +- ...+.+|+
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4456788999999 88765 556666666533 379999999999998865 3321222111111 11 11236899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ...+.+..+.|++||++++.
T Consensus 263 vid~~G~------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGS------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCC------hHHHHHHHHHHhcCCEEEEE
Confidence 9865331 25677788899999999873
No 264
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.68 E-value=0.0066 Score=60.82 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=83.7
Q ss_pred CeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCc---CCC
Q 023971 118 SKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPA---MPF 191 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~---~~~ 191 (274)
-.|+ ..+|.|-|+++|.+..- -.|+-+ ..+..|.+.-+|-- +-...--.|.++..+.+||+|=++..+. +--
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL-IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC 444 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL-IGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC 444 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc-chhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence 4689 99999999999976532 344444 44445555544411 1111112466888899999998773332 223
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCC----eEEEEE
Q 023971 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESG----FYLVVL 267 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~----~yl~v~ 267 (274)
+.+.++-||-|+|||||.++|-+.. .. .++++.++.+..|+...+..+++ -=++|+
T Consensus 445 ~~~~illEmDRILRP~G~~iiRD~~--~v------------------l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~ 504 (506)
T PF03141_consen 445 EMEDILLEMDRILRPGGWVIIRDTV--DV------------------LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILIC 504 (506)
T ss_pred cHHHHHHHhHhhcCCCceEEEeccH--HH------------------HHHHHHHHHhCcceEEEEecCCCCCCCceEEEE
Confidence 7889999999999999999997542 22 24666777777787665544442 235555
Q ss_pred Ee
Q 023971 268 KF 269 (274)
Q Consensus 268 ~~ 269 (274)
+|
T Consensus 505 ~K 506 (506)
T PF03141_consen 505 QK 506 (506)
T ss_pred EC
Confidence 54
No 265
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.66 E-value=0.023 Score=53.15 Aligned_cols=94 Identities=7% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEeccc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+....+.+|++|| .|+|. |.++..+++....+|+++|.+++=++.|++---+. .+ |..+. ..+.+|+++..-+
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-vi--~~~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-AG--GAYDT--PPEPLDAAILFAP 232 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-ec--ccccc--CcccceEEEECCC
Confidence 3446788999999 99764 55555566553357999999999888887632221 11 11111 1246887765432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. ...+.+..+.|++||++++.
T Consensus 233 ~------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 A------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred c------HHHHHHHHHhhCCCcEEEEE
Confidence 2 24688888999999999883
No 266
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.62 E-value=0.0093 Score=60.18 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=65.1
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----------------------
Q 023971 115 DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY---------------------- 170 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~---------------------- 170 (274)
.++++|| +|+|. |..+..+++.....|+++|.+++-++.+++ ++ .+++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-AEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-CeEEeccccccccccccceeecCHHHHHHHHH
Confidence 4568999 99998 566555555422479999999998888876 33 2332222111
Q ss_pred -CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 171 -VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 171 -LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++..-..+|+|+.+..+.-...|.-+.+++.+.+|||+.++-
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 332346799998776443333555688999999999999874
No 267
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0092 Score=53.53 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccE
Q 023971 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~ 180 (274)
+.+.+....-.|.||| +|+|+|-.+...++.+...|++.|+.+..++.++-+.. ++.+...|..- .+..||+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDL 145 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeE
Confidence 4555666677889999 99999988877777776899999999888777664432 35677777533 6789999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|..+-.+-+-.--.+.+.-..|....|-.++|.+|.
T Consensus 146 ~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 146 LLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred EEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999855544434456666445555555566667654
No 268
>PRK13699 putative methylase; Provisional
Probab=96.57 E-value=0.0098 Score=53.75 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=38.4
Q ss_pred eEEEeeccCC--CCCCCCccEEEec--ccC--cCCCC-----------HHHHHHHHHHhcCCCCEEEEE
Q 023971 162 KCWQGELIYV--PDKWGPLDVVFLY--FLP--AMPFP-----------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 162 ~~~~gDae~L--Pf~~~sFD~V~~~--f~l--~~~~d-----------~~~al~el~RvLKPGGrlvIs 213 (274)
++.+||+.++ .++++++|+|+.. |.. +.-.+ .++++.|++|||||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5678898775 5778999999976 432 11000 257899999999999999884
No 269
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.57 E-value=0.019 Score=53.91 Aligned_cols=91 Identities=9% Similarity=0.005 Sum_probs=60.0
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeC---cHHHHHHHHHhCCCceEEE---eeccCCCCCCCCccEEEec
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHD---SLFVLAGIKEKYDTVKCWQ---GELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~---S~~ML~~Ar~k~~~v~~~~---gDae~LPf~~~sFD~V~~~ 184 (274)
++.++++|| +|+|+ |.++..+++....+|+++|- +++=++.+++ +.. ..+. .|.++. ...+.+|+|+-+
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~Ga-~~v~~~~~~~~~~-~~~~~~d~vid~ 245 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LGA-TYVNSSKTPVAEV-KLVGEFDLIIEA 245 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC-EEecCCccchhhh-hhcCCCCEEEEC
Confidence 356889999 98876 66666776653358999986 6777777765 321 2221 111111 123569999876
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+- ...+.+..+.||+||++++
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 246 TGV------PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred cCC------HHHHHHHHHHccCCcEEEE
Confidence 542 2467888899999999987
No 270
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.52 E-value=0.029 Score=51.88 Aligned_cols=98 Identities=12% Similarity=-0.034 Sum_probs=62.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEe---eccCCC-C-CCCCccE
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQG---ELIYVP-D-KWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~g---Dae~LP-f-~~~sFD~ 180 (274)
+..+.+.++++|| .|+|+ |.++..+++....+ |+++|.+++-++.+++ +..-.++.. +.+.+. . ....+|+
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA-LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4556788899999 88765 45555565553345 9999999998888865 332122211 111111 1 2347999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..++.+..+.|++||++++.
T Consensus 235 vid~~g~------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 235 AIECSGN------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 9865332 34567778889999999873
No 271
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.50 E-value=0.023 Score=51.69 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=62.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-----eccCCCCCCCCcc
Q 023971 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-----ELIYVPDKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-----Dae~LPf~~~sFD 179 (274)
.+......++++|| .|+|+ |.++..+++... ..|+++|.+++-++.|++---+ .++.. .+.++. ....+|
T Consensus 112 al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~-~~~g~d 189 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-ALAEPEVLAERQGGLQ-NGRGVD 189 (280)
T ss_pred HHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-EecCchhhHHHHHHHh-CCCCCC
Confidence 34445566899999 98865 555666666533 3599999999988888763221 11110 011111 224689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ..++++..+.|+|||++++.
T Consensus 190 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEFSGA------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEECCCC------hHHHHHHHHHhcCCCEEEEe
Confidence 99865432 35788888999999999973
No 272
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.40 E-value=0.017 Score=53.37 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=57.3
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023971 115 DESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
.++++|| +|||+ |.++..+++... ..|+++|..++.++.|++.. .+ |..+. ....+|+|+-+.+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i--~~~~~--~~~g~Dvvid~~G~---- 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VL--DPEKD--PRRDYRAIYDASGD---- 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----cc--Chhhc--cCCCCCEEEECCCC----
Confidence 3578999 99876 667777766533 45778899999988886531 11 11110 23569999876442
Q ss_pred CHHHHHHHHHHhcCCCCEEEE
Q 023971 192 PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvI 212 (274)
...+.++.+.|+|||++++
T Consensus 211 --~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 211 --PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred --HHHHHHHHHhhhcCcEEEE
Confidence 2456777888999999997
No 273
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.39 E-value=0.0066 Score=54.38 Aligned_cols=92 Identities=9% Similarity=-0.023 Sum_probs=70.8
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh--CC---CceEEEeeccCCCCCCCCccEEEeccc--CcC
Q 023971 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK--YD---TVKCWQGELIYVPDKWGPLDVVFLYFL--PAM 189 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k--~~---~v~~~~gDae~LPf~~~sFD~V~~~f~--l~~ 189 (274)
+.+- +|+|||.++...++.. .+|+||...+..-+.|+++ .+ +++.+.|||.+..| +.-|+|+|-.. .-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 5677 9999999887776654 5999999999999999988 33 57889999999988 77899998732 112
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEE
Q 023971 190 PFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+..-.+++.+..-||-.|.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 22333677777778888888753
No 274
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.13 Score=46.18 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-eccCC--------CCCCCCccEE
Q 023971 114 IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-ELIYV--------PDKWGPLDVV 181 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-Dae~L--------Pf~~~sFD~V 181 (274)
+.|+++|| +||-+|.-+....++ +| +.|.|||+=.- .-.+++.+++| |+.+- -+++-..|+|
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 36899999 999999999888777 47 99999998531 12235667766 55331 0245889999
Q ss_pred EecccCcC----CCCHHH-------HHHHHHHhcCCCCEEEEEcCCC
Q 023971 182 FLYFLPAM----PFPLDQ-------VFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 182 ~~~f~l~~----~~d~~~-------al~el~RvLKPGGrlvIs~~~g 217 (274)
++-..+.- .-|... ++.-....++|+|.+++--..|
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 97654422 124333 2333345689999999953333
No 275
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.33 E-value=0.05 Score=51.34 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=64.7
Q ss_pred HhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC-CC-CCCCCccE
Q 023971 110 SAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY-VP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~-LP-f~~~sFD~ 180 (274)
+...+.+|++|| .|+ | .|.++..+++....+|++++.+++-++.+++++..-.++.. |..+ +. ...+.+|+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 446788999999 887 3 57777777775335899999999998888755543222221 1111 10 11246899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.+..+.|++||++++
T Consensus 232 v~d~vG-------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 232 YFDNVG-------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEE
Confidence 986543 1467788889999999987
No 276
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.33 E-value=0.048 Score=49.98 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=63.2
Q ss_pred HhCCCCCCCeEE-EEcC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-CCCCCccEEEeccc
Q 023971 110 SAGEIDESSKVL-VSIS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-DKWGPLDVVFLYFL 186 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-f~~~sFD~V~~~f~ 186 (274)
....+.++++|| .||| .|..+..+++....+|++++.++++++.+++ ...-.++..+-+... ...+.+|+|+...+
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGADEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCCcEEeccCCcchHHhccCCCCEEEECCC
Confidence 346788899999 8886 5666666666533589999999999998855 332122211111110 01246999886432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ..++.++.+.|+++|+++..
T Consensus 235 ~------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 S------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred c------HHHHHHHHHhcccCCEEEEE
Confidence 1 34678888999999999874
No 277
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.30 E-value=0.062 Score=49.07 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=62.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc
Q 023971 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
++....+.++++|| .|+|. |.++..+++....+|++++.+++.++.+++ +. +... -+..+. ...+.+|+|+-+.
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g-~~~~-~~~~~~-~~~~~~d~vid~~ 222 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG-VETV-LPDEAE-SEGGGFDVVVEAT 222 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC-CcEE-eCcccc-ccCCCCCEEEECC
Confidence 44566788999999 76543 333334444322479999999999999987 43 2111 111111 2446799998653
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- ...+..+.+.|++||++++.
T Consensus 223 g~------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 GS------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CC------hHHHHHHHHHhhcCCEEEEE
Confidence 21 35677888899999999973
No 278
>PLN02740 Alcohol dehydrogenase-like
Probab=96.29 E-value=0.046 Score=52.08 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----c----cCCCCCCCC
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----L----IYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----a----e~LPf~~~s 177 (274)
+...+.+|++|| .|||+ |.++..+++... .+|+++|.+++-++.|++ +..-.++..+ . .++. .+.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~~~v~~~~--~~g 268 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGITDFINPKDSDKPVHERIREMT--GGG 268 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCCcEEEecccccchHHHHHHHHh--CCC
Confidence 446788999999 98876 555566666533 369999999999999965 3322222211 1 1121 226
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvI 212 (274)
+|+|+-..+- ..++.+..+.+++| |++++
T Consensus 269 ~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 269 VDYSFECAGN------VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCEEEECCCC------hHHHHHHHHhhhcCCCEEEE
Confidence 9999865442 24677777789997 99887
No 279
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.27 E-value=0.049 Score=50.22 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee---ccCCCCCCCCccEEEecc
Q 023971 112 GEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE---LIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---ae~LPf~~~sFD~V~~~f 185 (274)
+...++.+|| .|||. |..+..+++... .+|++++.++++.+.+++ ++.-.++..+ ..++....+.+|+|+-+.
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 3333889999 87765 666666666533 379999999999986655 3321222111 112332334599998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...++++.+.|+++|+++..
T Consensus 240 g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 240 GA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CC------HHHHHHHHHHHhcCCEEEEE
Confidence 32 35688889999999999863
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.25 E-value=0.03 Score=57.63 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=62.5
Q ss_pred CeEE-EEcCchHHHHHHHH-------hCC------CcEEEEeC---cHHHHHHHHHhC--------------C-------
Q 023971 118 SKVL-VSISSEEFVDRVVE-------SSP------SLLLVVHD---SLFVLAGIKEKY--------------D------- 159 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~-------~~~------~~V~gVD~---S~~ML~~Ar~k~--------------~------- 159 (274)
=+|| +|=|||.....+.+ ..+ -++++++. +.+-|+.+-+.+ |
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 4788 99999975443321 111 47899984 455555543221 1
Q ss_pred ---------CceEEEeeccC-CCCCCCCccEEEec-ccCcCCCCH--HHHHHHHHHhcCCCCEEEE
Q 023971 160 ---------TVKCWQGELIY-VPDKWGPLDVVFLY-FLPAMPFPL--DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 160 ---------~v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~~~d~--~~al~el~RvLKPGGrlvI 212 (274)
.++++.||+.+ ++.-...||+++.= |.+...++. ++.|++|+|.++|||+++=
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 13467799876 45434679999976 777543222 5899999999999999974
No 281
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.23 E-value=0.072 Score=51.37 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=62.5
Q ss_pred hCCCCCCCeEE-EE-cCc-hHHHHHHHHh-C--CCcEEEEeCcHHHHHHHHHhCC------Cce--EEEe----ecc---
Q 023971 111 AGEIDESSKVL-VS-ISS-EEFVDRVVES-S--PSLLLVVHDSLFVLAGIKEKYD------TVK--CWQG----ELI--- 169 (274)
Q Consensus 111 ~~~~~~~~rVL-vG-cGT-G~l~~~L~~~-~--~~~V~gVD~S~~ML~~Ar~k~~------~v~--~~~g----Dae--- 169 (274)
...+.++++|| +| +|+ |.++..+++. + ..+|+++|.+++-++.|++.++ ... ++.. |..
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATL 249 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHH
Confidence 45678899999 87 454 7777767665 2 2479999999999999988633 222 2211 110
Q ss_pred -CCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 170 -YVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 170 -~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++. ....+|+|+...+- ..++.+..+.++++|++++
T Consensus 250 ~~~t-~g~g~D~vid~~g~------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 250 MELT-GGQGFDDVFVFVPV------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHh-CCCCCCEEEEcCCC------HHHHHHHHHHhccCCeEEE
Confidence 111 23469998865331 3577888889999998765
No 282
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.18 E-value=0.068 Score=47.71 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=62.4
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
+....+.++++|| .|||. |..+..+++....+ |+++|.+++.++.+++.-..-.++...- .. .....+|+|+-+.
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~~~~d~vl~~~ 167 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-DE-IGGRGADVVIEAS 167 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-hh-hcCCCCCEEEEcc
Confidence 3456788999999 87765 55555555543345 9999999999997776430111111110 11 1345699998643
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...+.+..+.|+++|+++..
T Consensus 168 ~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 GS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CC------hHHHHHHHHHhcCCcEEEEE
Confidence 22 34678888899999999863
No 283
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.14 E-value=0.056 Score=50.36 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=60.9
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee---ccCCC--CCCCCcc-
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE---LIYVP--DKWGPLD- 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---ae~LP--f~~~sFD- 179 (274)
+....+.++++|| .|+|+ |.++..+++... ..|+++|.+++-++.+++ +..-.++..+ .+++- .....+|
T Consensus 153 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 153 FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3445678899999 88766 555555665533 348999999999988854 3321222111 11110 1234677
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ...+.+..+.|+|||++++.
T Consensus 232 ~v~d~~G~------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILETAGV------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 65543332 35778888999999999884
No 284
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.14 E-value=0.037 Score=52.43 Aligned_cols=95 Identities=5% Similarity=-0.013 Sum_probs=57.7
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEecccCcC
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+.++++|| .|+|+ |.++..+++....+|+++|.+.+-...+.+++..-.++. .+.+.+....+.+|+|+-..+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-- 257 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-- 257 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC--
Confidence 456889999 88765 555556666533578999888766544444443212221 1111111111358999865441
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..++.+..+.|++||++++.
T Consensus 258 ----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 258 ----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ----HHHHHHHHHHhcCCcEEEEe
Confidence 24678888999999999863
No 285
>PRK10742 putative methyltransferase; Provisional
Probab=96.08 E-value=0.02 Score=52.84 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=60.4
Q ss_pred HHHHHhCCCCCCC--eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH---hC-----------CCceEEEeec
Q 023971 106 DQIISAGEIDESS--KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE---KY-----------DTVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~~--rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~---k~-----------~~v~~~~gDa 168 (274)
..+++++++++|. +|| +-+|+|..+..++.+| +.|++||-++.+.+..++ +. .+++.+.+|+
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4678888999998 999 9999999999998887 479999999997766553 21 2366778888
Q ss_pred cCC-CCCCCCccEEEec
Q 023971 169 IYV-PDKWGPLDVVFLY 184 (274)
Q Consensus 169 e~L-Pf~~~sFD~V~~~ 184 (274)
.+. .-...+||+|++=
T Consensus 155 ~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 155 LTALTDITPRPQVVYLD 171 (250)
T ss_pred HHHHhhCCCCCcEEEEC
Confidence 664 2223479999954
No 286
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=96.00 E-value=0.081 Score=51.10 Aligned_cols=102 Identities=11% Similarity=-0.043 Sum_probs=64.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEE---eec----cCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa----e~LPf~~~sF 178 (274)
+....+.++++|| .|+|+ |.++..+++. +...|+++|.+++-++.|++---. .+.. .+. .++. ....+
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~-~~~g~ 255 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQIL-GEPEV 255 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHc-CCCCC
Confidence 3446788999999 77765 5555556554 334577789999888888874211 1211 111 1111 23469
Q ss_pred cEEEecccCc--------CCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 179 DVVFLYFLPA--------MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~--------~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-..+.. ...++..++++..+.+++||++++
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 9998654432 112334689999999999999998
No 287
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.00 E-value=0.048 Score=53.75 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=63.2
Q ss_pred HHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023971 105 IDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
+..+++..++ -+|++|+ +|||. |..+..+++....+|+++|.++.-++.|++- ++... +.++. -..+|+|
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~--G~~~~--~~~e~---v~~aDVV 261 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME--GYEVM--TMEEA---VKEGDIF 261 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc--CCEEc--cHHHH---HcCCCEE
Confidence 4566666554 5789999 99998 6666655554325899999999988888763 22221 11111 1357999
Q ss_pred EecccCcCCCCHHHHHH-HHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+.+-+- ..++. +..+.+|+||+++..
T Consensus 262 I~atG~------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTGN------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCCC------HHHHHHHHHhcCCCCcEEEEe
Confidence 876432 23454 458899999999763
No 288
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.95 E-value=0.094 Score=48.84 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=63.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++++|| .|+|+ |.++..+++... ..|+++|.+++.++.+++ +..-.++..+ +..+. ....+
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGATDIVDYKNGDVVEQILKLT-GGKGV 236 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCceEecCCCCCHHHHHHHHh-CCCCC
Confidence 3456788999999 87653 555556665533 469999999999888876 3321222111 11111 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-+.+- ..++.++.+.|+++|+++.
T Consensus 237 d~vld~~g~------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 237 DAVIIAGGG------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred cEEEECCCC------HHHHHHHHHHhhcCCEEEE
Confidence 999865332 3578899999999999986
No 289
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.92 E-value=0.099 Score=48.30 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=61.7
Q ss_pred HhCCCCCC--CeEE-EEc--CchHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCc
Q 023971 110 SAGEIDES--SKVL-VSI--SSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~--~rVL-vGc--GTG~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sF 178 (274)
+...+.++ ++|| .|+ |.|.++..+++.... +|++++-+++..+.+++++..-.++..+-+++. ..+..+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34456665 8999 775 457777777665434 799999999988888876543222221111110 122569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-..+ . ..+.+..+.|++||+++.
T Consensus 226 d~vid~~g-----~--~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDNVG-----G--EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEECCC-----c--HHHHHHHHHhccCCEEEE
Confidence 99986433 1 235778889999999986
No 290
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.92 E-value=0.12 Score=48.07 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=64.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee----------ccCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE----------LIYVPDKW 175 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD----------ae~LPf~~ 175 (274)
+....+.++++|| .|+|+ |.++..+++....+ |++++-+++..+.+++. ..-.++..+ +.++ ...
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~~~~~-~~~ 232 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GATHTVNVRTEDTPESAEKIAEL-LGG 232 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCcEEeccccccchhHHHHHHHH-hCC
Confidence 4567889999999 77665 56666666654345 99999999988888653 221222111 1112 234
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- ...+.++.+.|+++|+++..
T Consensus 233 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 569999865432 23688889999999999874
No 291
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=95.92 E-value=0.077 Score=48.58 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=63.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCC----CCCCCCccEEE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYV----PDKWGPLDVVF 182 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L----Pf~~~sFD~V~ 182 (274)
....+.++++|| .|+|. |..+..+++....+ |++++-+++..+.+++.... .++..+-... ......+|+|+
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 556788999999 87653 55555565553334 89999999999988654322 2222221111 11346799999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+ ....+.++.+.|+++|+++..
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEE
Confidence 6532 136788889999999999874
No 292
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.90 E-value=0.0094 Score=54.43 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCC----CCCCCCccEEEec
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYV----PDKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~L----Pf~~~sFD~V~~~ 184 (274)
.+.|+ ..||-|--+...+.+++ .|++||+++.=|+.||+.. | .++|+|||..++ -+...-+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 35777 77777666666666675 8999999999999999873 2 489999998764 3555557787765
No 293
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.88 E-value=0.095 Score=49.09 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE---eeccCC----C--CCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GELIYV----P--DKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDae~L----P--f~~~s 177 (274)
+....+.++++|| .|||+ |.++..+++....+|+++|.+++.++.|++ +..-.++. -|.+++ . -....
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-FGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hCCceEecCccccHHHHHHHHHhhcccCC
Confidence 3446788899999 99976 666666666533589999999999999865 33211221 110011 0 01123
Q ss_pred cc----EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LD----VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD----~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+| +|+-+.+- ..++....+.|++||++++.
T Consensus 238 ~d~~~d~v~d~~g~------~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 238 LRSTGWKIFECSGS------KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCCcCEEEECCCC------hHHHHHHHHHHhcCCeEEEE
Confidence 44 56533221 34677778889999999874
No 294
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.77 E-value=0.14 Score=44.32 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=71.9
Q ss_pred EEcCchHHHHHHHHh-C-CCcEEEEeCcHHHHHHHHHhCC------------CceE-EEeeccCCCC----CCCCccEEE
Q 023971 122 VSISSEEFVDRVVES-S-PSLLLVVHDSLFVLAGIKEKYD------------TVKC-WQGELIYVPD----KWGPLDVVF 182 (274)
Q Consensus 122 vGcGTG~l~~~L~~~-~-~~~V~gVD~S~~ML~~Ar~k~~------------~v~~-~~gDae~LPf----~~~sFD~V~ 182 (274)
||=|-=.++..|++. + +..++|--+..+ +...+||+ ++.. ..-||++|.. ....||.|+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~--~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSE--EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCch--HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 555555566677775 3 356666544333 33334443 2232 3578887763 458999999
Q ss_pred ecccCcCC---C-----------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHh
Q 023971 183 LYFLPAMP---F-----------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 183 ~~f~l~~~---~-----------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~ 248 (274)
.+|- |.- . =....|+...++|+++|.+.|++..+.+ +..| ++.+++++
T Consensus 81 FNFP-H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-----y~~W------------~i~~lA~~ 142 (166)
T PF10354_consen 81 FNFP-HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-----YDSW------------NIEELAAE 142 (166)
T ss_pred EeCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----Cccc------------cHHHHHHh
Confidence 8863 221 0 0235677889999999999998766543 1222 45567788
Q ss_pred CCCcEeEEEe
Q 023971 249 HCFQIDNFVD 258 (274)
Q Consensus 249 aGF~~v~~~d 258 (274)
+||....-.+
T Consensus 143 ~gl~l~~~~~ 152 (166)
T PF10354_consen 143 AGLVLVRKVP 152 (166)
T ss_pred cCCEEEEEec
Confidence 8887766554
No 295
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.74 E-value=0.15 Score=46.57 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=63.0
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEE
Q 023971 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V 181 (274)
...++.+|++|| .|. |.|.++..+++....+|++++-+++-.+.+++ +.--.++...-+++ ....+.+|+|
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 456788999999 773 44667777766543589999999998888876 43222222111111 0112568998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+-..+ ...+.+..+.|++||++++
T Consensus 216 ld~~g-------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 216 FDNVG-------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred EECCC-------HHHHHHHHHhhccCCEEEE
Confidence 85433 2457888899999999986
No 296
>PLN02827 Alcohol dehydrogenase-like
Probab=95.71 E-value=0.1 Score=49.78 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=60.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-----eccC-CC-CCCCCcc
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-----ELIY-VP-DKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-----Dae~-LP-f~~~sFD 179 (274)
+...+.++++|| .|+|+ |.++..+++... ..|+++|.+++-++.|++ +.--.++.. ++.+ +. ...+.+|
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~-lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT-FGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 345678899999 98766 555555655433 469999999999988865 332112211 1111 10 1123699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvI 212 (274)
+|+-..+- ..++.+..+.|++| |++++
T Consensus 266 ~vid~~G~------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGD------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCC------hHHHHHHHHhhccCCCEEEE
Confidence 99865432 24677778889999 99986
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=95.64 E-value=0.016 Score=53.80 Aligned_cols=55 Identities=9% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CceEEEeeccCC--CCCCCCccEEEec--ccCc-CCC-------------CHHHHHHHHHHhcCCCCEEEEEc
Q 023971 160 TVKCWQGELIYV--PDKWGPLDVVFLY--FLPA-MPF-------------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 160 ~v~~~~gDae~L--Pf~~~sFD~V~~~--f~l~-~~~-------------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.++++||+.++ .+++++||+|++. |... ... -.++.+.++.|+|||||.++|..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 356788999884 3568999999986 4331 100 12578999999999999999863
No 298
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=95.59 E-value=0.18 Score=46.81 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=64.5
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE---e-eccC-C-CCCCCCccE
Q 023971 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---G-ELIY-V-PDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---g-Dae~-L-Pf~~~sFD~ 180 (274)
+..++.+|++|| .|+ |.|.++..+++....+|++++-+++-.+.+++++..-.++. . |..+ + -...+.+|+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 446788999999 876 34677777776533589999999999888887554222222 1 1111 0 011257999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-..+ ...+.+..+.|++||++++
T Consensus 225 v~d~~g-------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 225 YFDNVG-------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred EEECCC-------HHHHHHHHHHhccCcEEEE
Confidence 986533 2467888899999999987
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=95.57 E-value=0.14 Score=48.56 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=62.2
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE-e----e----ccCCCCCCCC
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ-G----E----LIYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~-g----D----ae~LPf~~~s 177 (274)
+...+.++++|| .|||+ |.++..+++... .+|+++|.+++-++.|++- ..-..+. . + +.++. .+.
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga~~~i~~~~~~~~~~~~v~~~~--~~g 255 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GATDCVNPNDYDKPIQEVIVEIT--DGG 255 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCeEEcccccchhHHHHHHHHh--CCC
Confidence 456788999999 98865 566666666543 3799999999999998653 2211111 1 1 11111 236
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-..+- ..++.+..+.+++| |++++.
T Consensus 256 ~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 256 VDYSFECIGN------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCCeEEEE
Confidence 8998865331 34677778889997 999863
No 300
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.48 E-value=0.16 Score=46.76 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=63.3
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC-C-CCCCCCcc
Q 023971 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY-V-PDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~-L-Pf~~~sFD 179 (274)
.+..++.+|++|| .|. |.|.++..+++....+|++++-+++-++.+++ +.--.++.. +.++ + ....+.+|
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCCEEEeccccccHHHHHHHhCCCCeE
Confidence 3556788999999 874 35777777777533589999999998888865 332112211 1111 0 01134699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ..+.++.+.|+|||++++.
T Consensus 210 vv~d~~G~-------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 210 CYFDNVGG-------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEECCCH-------HHHHHHHHHhCcCcEEEEe
Confidence 99854331 3457788899999999973
No 301
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=95.44 E-value=0.12 Score=47.52 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
....+.++++|| .|+|+ |..+..+++... ..|++++-+++..+.+++.. ...++... +..+. .++.+|
T Consensus 161 ~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~i~~~~-~~~~~d 238 (347)
T cd05278 161 ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-ATDIINPKNGDIVEQILELT-GGRGVD 238 (347)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-CcEEEcCCcchHHHHHHHHc-CCCCCc
Confidence 345677889999 66653 556666666543 47999999998888877542 21222111 11111 235799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ...+.++.+.|+++|+++..
T Consensus 239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 99854321 25788889999999999864
No 302
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.43 E-value=0.15 Score=48.03 Aligned_cols=94 Identities=6% Similarity=-0.014 Sum_probs=58.8
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEecccCcCC
Q 023971 114 IDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
..++++|| .|+|. |.++..+++....+|++++.+++..+.+.+++..-..+. .+.+.+......+|+|+-..+-
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~--- 254 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPV--- 254 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCc---
Confidence 46889999 87654 555556665533578999999888777766665322221 1111111112358988854331
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|++||+++..
T Consensus 255 ---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 255 ---FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ---hHHHHHHHHHhccCCEEEEE
Confidence 24677778899999999874
No 303
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.43 E-value=1.1 Score=41.45 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCCCCeEE-EEcCchHHHHHH-HHhC-CCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccC-CCC-CCCCccEEEe
Q 023971 113 EIDESSKVL-VSISSEEFVDRV-VESS-PSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIY-VPD-KWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L-~~~~-~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~-LPf-~~~sFD~V~~ 183 (274)
+--.|.+|| || -++++... +-.+ +.+|+.+|+.+.+|+-.++. --++++.+.|+.+ ||. --+.||+++.
T Consensus 41 gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 41 GDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred CcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence 333567888 77 55554322 2223 48999999999999775532 2248999999876 663 3589999997
Q ss_pred c--ccCcCCCCHHHHHHHHHHhcCCCC-EEEE
Q 023971 184 Y--FLPAMPFPLDQVFETLANRCSPGA-RVVI 212 (274)
Q Consensus 184 ~--f~l~~~~d~~~al~el~RvLKPGG-rlvI 212 (274)
- +++ +-..-.+..-...||.-| ..++
T Consensus 119 DPPyT~---~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPPYTP---EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---SSH---HHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCCCCH---HHHHHHHHHHHHHhCCCCceEEE
Confidence 5 333 233455666667788767 4344
No 304
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.40 E-value=0.23 Score=45.43 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=59.8
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
....+.++++|| .|||. |.++..+++....+|++++.+.+..+.+++ +. +.... +.... ..+.+|+++.....
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~-~~~~~--~~~~vD~vi~~~~~ 235 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG-ADWAG-DSDDL--PPEPLDAAIIFAPV 235 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC-CcEEe-ccCcc--CCCcccEEEEcCCc
Confidence 556788899999 76553 333334444433689999999998888844 43 22211 11112 23568988753221
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.++.|.|++||++++.
T Consensus 236 ------~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 236 ------GALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ------HHHHHHHHHHhhcCCEEEEE
Confidence 24788899999999999974
No 305
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=95.33 E-value=0.19 Score=46.35 Aligned_cols=97 Identities=19% Similarity=0.055 Sum_probs=65.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
+....+.++++|| .|+|. |..+..+++....+|+++.-+++..+.+++.. .-.++... +..+ ..+..+|
T Consensus 152 ~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~~~v~~~~~~~~~~~l~~~-~~~~~vd 229 (337)
T cd08261 152 VRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-ADDTINVGDEDVAARLREL-TDGEGAD 229 (337)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-CCEEecCcccCHHHHHHHH-hCCCCCC
Confidence 3456788999999 87764 66666676653368999989999998886533 21222111 1111 1345699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+...+- ...+.++.+.|+++|+++..
T Consensus 230 ~vld~~g~------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 99865431 35688889999999999864
No 306
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.33 E-value=0.23 Score=46.95 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee---------ccCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE---------LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---------ae~LPf~~~ 176 (274)
.+...+.++++|| .|+|. |.++..+++.... .|+++|.+++-++.+++ +..-.++..+ +.++ .++
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa~~~i~~~~~~~~~~~~v~~~--~~~ 255 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGATDCVNPKDHDKPIQQVLVEM--TDG 255 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCEEEcccccchHHHHHHHHH--hCC
Confidence 3456788999999 88764 5555556655333 79999999999998865 3322222111 1111 123
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
.+|+|+-..+- ..++.+..+.|++| |++++.
T Consensus 256 g~d~vid~~g~------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 256 GVDYTFECIGN------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCcEEEECCCC------hHHHHHHHHhhccCCCeEEEE
Confidence 69999865331 34677788889997 999873
No 307
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.32 E-value=0.044 Score=50.66 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=54.1
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC--CCCccEEEec
Q 023971 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK--WGPLDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~--~~sFD~V~~~ 184 (274)
+|+ +-||.|-+...+.+.+-..|.++|+.+..++..++++++. .+++|+.++... ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeC
Confidence 689 9999999988887766567899999999999999998865 678999888643 3679999966
No 308
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.29 E-value=0.27 Score=45.93 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=57.6
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee----------ccCCCCCCCCccE
Q 023971 114 IDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE----------LIYVPDKWGPLDV 180 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD----------ae~LPf~~~sFD~ 180 (274)
..++++|| .|+|. |.++..+++.... +|++++-+++-.+.+++ ..--.++..+ +.++. ....+|+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~d~ 252 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGADATIDIDELPDPQRRAIVRDIT-GGRGADV 252 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCCeEEcCcccccHHHHHHHHHHh-CCCCCcE
Confidence 34889999 76653 4444555555334 89999999998887754 3321222111 11111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..++.+..+.|+++|++++.
T Consensus 253 vid~~g~------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 253 VIEASGH------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEECCCC------hHHHHHHHHHhccCCEEEEE
Confidence 9855322 34677888999999999874
No 309
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.27 E-value=0.24 Score=46.70 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCC-CCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYV-PDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~L-Pf~~~sF 178 (274)
.+...+.++++|| .|+|+ |.++..+++... .+|+++|.+++-++.+++ +.--.++... .+.+ ......+
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 3446788999999 87764 455555655533 479999999999998865 3221121110 0001 0112468
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
|+|+-+.+- ..++.+..+.|+|| |++++.
T Consensus 256 d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 256 DYSFECTGN------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CEEEECCCC------hHHHHHHHHhcccCCCEEEEE
Confidence 999854331 25678888899986 999874
No 310
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.27 E-value=0.21 Score=47.09 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=61.9
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----c----cCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----L----IYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----a----e~LPf~~~ 176 (274)
.+..++.++++|| .|+|. |.++..+++... .+|+++|.+++-++.+++ +....++.-+ . .++ ..+
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~v~~~--~~~ 256 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-FGVTEFVNPKDHDKPVQEVIAEM--TGG 256 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEEcccccchhHHHHHHHH--hCC
Confidence 3446788999999 87654 455555665533 479999999999999865 4422222111 0 112 123
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
.+|+|+-..+- ..++....+.+++| |++++.
T Consensus 257 ~~d~vid~~G~------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 257 GVDYSFECTGN------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCCEEEECCCC------hHHHHHHHHHhhcCCCEEEEE
Confidence 68988854321 35677778889996 999873
No 311
>PRK10083 putative oxidoreductase; Provisional
Probab=95.22 E-value=0.19 Score=46.32 Aligned_cols=99 Identities=17% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh--CCCcEEEEeCcHHHHHHHHHhCCCceEE---Eeec-cCCCCCCCCcc
Q 023971 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES--SPSLLLVVHDSLFVLAGIKEKYDTVKCW---QGEL-IYVPDKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~--~~~~V~gVD~S~~ML~~Ar~k~~~v~~~---~gDa-e~LPf~~~sFD 179 (274)
++...++.++++|| .|+|. |.++..+++. +...++++|-+++-++.+++---+ .++ ..+. +.++.....+|
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALEEKGIKPT 230 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHhcCCCCCC
Confidence 44556788999999 88764 4445555553 435699999999988888753211 111 1111 11221222356
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+ . ..++.+..+.|++||+++..
T Consensus 231 ~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 231 LIIDAAC-----H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 7775433 1 34788889999999999873
No 312
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.19 E-value=0.19 Score=46.53 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=61.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-CCCCCCccEEEecc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-PDKWGPLDVVFLYF 185 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-Pf~~~sFD~V~~~f 185 (274)
+..+.+.++++|| .|||. |.++..+++....+|++++.+++.++.+++ +..-.++...-... ....+.+|+|+...
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCcEEecCcchhhhhhccCCceEEEECC
Confidence 3445678899999 77643 444555555433589999999999988864 43212221111111 11146799998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-. ..+.++.+.|+++|+++..
T Consensus 241 g~~------~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SAS------HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCc------chHHHHHHHhcCCCEEEEE
Confidence 321 2467778889999999874
No 313
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.16 E-value=0.28 Score=45.65 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=62.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEE---eec----cCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa----e~LPf~~~sF 178 (274)
+....+.++++|| .|+|. |.++..+++.... +|++++-+++.++.+++ +..-.++. .+. .++ .....+
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~l~~~-~~~~~~ 242 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LGATIVLDPTEVDVVAEVRKL-TGGGGV 242 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCCEEECCCccCHHHHHHHH-hCCCCC
Confidence 3556788899999 87643 4455555555333 79999999999988865 33211221 111 111 122459
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. ...++++.+.|++||+++..
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEE
Confidence 999865432 24678888999999999873
No 314
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.2 Score=48.65 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=67.8
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC-C----CcEEEEeCcHHHHHH---HHHhCCC--ceEEEeeccCCC-------
Q 023971 111 AGEIDESSKVL-VSISSEEFVDRVVESS-P----SLLLVVHDSLFVLAG---IKEKYDT--VKCWQGELIYVP------- 172 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~----~~V~gVD~S~~ML~~---Ar~k~~~--v~~~~gDae~LP------- 172 (274)
.+++++|++|| +|+-.|.=+..|.+.. + +.|++-|.+..-+.. .-++.+. +.....|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 35889999999 9999997777776642 1 389999999874444 3344443 333444444444
Q ss_pred --CCCCCccEEEec-----c-cCcCCC----------------CHH-HHHHHHHHhcCCCCEEEEEcC
Q 023971 173 --DKWGPLDVVFLY-----F-LPAMPF----------------PLD-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 --f~~~sFD~V~~~-----f-~l~~~~----------------d~~-~al~el~RvLKPGGrlvIs~~ 215 (274)
.+-..||-|.|- - +++.-. .++ +.++.-.|.||+||++|-++.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 233568888732 1 122111 111 567778899999999999754
No 315
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.03 E-value=0.29 Score=49.16 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-CCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeec
Q 023971 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-PSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGEL 168 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDa 168 (274)
.+...+-+++.+.+.+..+|. -+||||.+.....+. . ...+.|.+..+.+.+.|+-+. . ++....+|.
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 344556667777777888999 999999875544332 1 256999999999999999762 2 244555655
Q ss_pred cCCCC-----CCCCccEEEec--cc-CcCCC---------------------CH-HHHHHHHHHhcCCCCEEEEE
Q 023971 169 IYVPD-----KWGPLDVVFLY--FL-PAMPF---------------------PL-DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 169 e~LPf-----~~~sFD~V~~~--f~-l~~~~---------------------d~-~~al~el~RvLKPGGrlvIs 213 (274)
-.=|- ..+.||.|+++ |. -.|.. .- ...++.+...|+|||+..|-
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 44332 34779999987 43 11211 11 46788999999999988874
No 316
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.03 E-value=0.29 Score=45.32 Aligned_cols=97 Identities=7% Similarity=0.021 Sum_probs=61.1
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEec
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLY 184 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~ 184 (274)
..+.+.++++|| .|||. |..+..+++....+|++++.+++-++.+++ +..-.++...-+++. -....+|+|+..
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 445788899999 88654 444555555433579999999999998854 442222221111110 011358998854
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- ...+.++.+.|++||+++..
T Consensus 236 ~g~------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 236 APN------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCc------hHHHHHHHHHcccCCEEEEE
Confidence 321 35788888999999999873
No 317
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.88 E-value=0.13 Score=49.28 Aligned_cols=92 Identities=8% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHH-HHHHHHhCCCceEEEe-eccCCCCCCCCccEEEecccCcCC
Q 023971 115 DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFV-LAGIKEKYDTVKCWQG-ELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~M-L~~Ar~k~~~v~~~~g-Dae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
.++++|| .|+|. |.++..+++....+|+++|.+.+- ++.++ ++.--.++.. +.+.+......+|+|+-..+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~--- 252 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-RLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA--- 252 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-hCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc---
Confidence 5789999 88865 555566666533579999988655 44553 3332112211 111111111258998865331
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
..++.+..+.|++||+++..
T Consensus 253 ---~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 253 ---EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred ---HHHHHHHHHhhcCCCEEEEE
Confidence 34678888899999999873
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.88 E-value=0.13 Score=40.81 Aligned_cols=116 Identities=14% Similarity=-0.030 Sum_probs=70.3
Q ss_pred CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----CC-C-CCCCCccEEEecccCcCCCCHHHHHH
Q 023971 125 SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----YV-P-DKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 125 GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----~L-P-f~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
|.|.++..+++....+|+++|.+++=++.+++-. .-.++..+-. ++ . ..+..+|+|+-+.+- ...++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------~~~~~ 73 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG-ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------GDTLQ 73 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------HHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc-ccccccccccccccccccccccccceEEEEecCc------HHHHH
Confidence 4677888887763379999999999999998743 2222221111 11 1 223589999976542 57899
Q ss_pred HHHHhcCCCCEEEEEcCCC--hh--HHHHHHhhCcccccccCCCHHHHHHHHH
Q 023971 199 TLANRCSPGARVVISHPQG--RE--ALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 199 el~RvLKPGGrlvIs~~~g--r~--~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
+....|+|||++++.-..+ .. ....+...-..+......+.++..+.++
T Consensus 74 ~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp HHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 9999999999999953222 10 1122222222223344555677777665
No 319
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.82 E-value=0.41 Score=44.13 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=62.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~ 180 (274)
....+.++.+|| .|+|+ |.++..+++....+ |++++-++++.+.+++ +....++..+ +..+. ....+|+
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~d~ 230 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-LGADDTINPKEEDVEKVRELT-EGRGADL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCCCEEecCccccHHHHHHHh-CCCCCCE
Confidence 356778899999 88765 66666666654344 9999999999888754 3322222211 11121 2245999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+ ....+.++.+.|+++|+++..
T Consensus 231 vld~~g------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC------CHHHHHHHHHHhhcCCEEEEE
Confidence 985521 245788889999999999874
No 320
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.79 E-value=0.092 Score=47.22 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHH---HHh-CC-CcEEEEeCcHHHHHHHHHhC----CCceEEEeec
Q 023971 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRV---VES-SP-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGEL 168 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L---~~~-~~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDa 168 (274)
+++.....+++-.+ +| +.|+ +|.=.|--+..+ .+. ++ ++|+|||+...-........ +.+++++||.
T Consensus 18 P~Dm~~~qeli~~~--kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 18 PQDMVAYQELIWEL--KP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp HHHHHHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred HHHHHHHHHHHHHh--CC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 34555566676554 34 5788 888665333322 333 34 89999999765554433332 6799999998
Q ss_pred cCCC------CCCCCccE-EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 169 IYVP------DKWGPLDV-VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 169 e~LP------f~~~sFD~-V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+.- ......+- +++--+-|.-...-+.|+-.+..++||+.+||.+.
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 6532 11112232 23334555555677888889999999999999654
No 321
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.73 E-value=0.072 Score=51.50 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023971 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
++.+|+ +|+|. |..+...+.....+|+++|.+++-++.+.+++.. +.....+.+++...-..+|+|+.+..+.-...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 345799 98884 5555555444224899999999888777776653 21111222223222246899997642211112
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023971 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
+.-+-+++.+.+|||+.++-
T Consensus 246 p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEE
Confidence 22234666677899988764
No 322
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.65 E-value=0.31 Score=45.98 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=61.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccEE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~V 181 (274)
....+.++++|| .|+|. |.++..+++... ..|+++|.+++.++.+++ +..-.++..+-+. +- .....+|+|
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~-~g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 345678899999 77654 555555655533 469999999999988865 3221222211111 10 113569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ...+.++.+.|+++|+++..
T Consensus 259 ld~~g~------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTGV------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EECCCC------cHHHHHHHHHhccCCEEEEe
Confidence 865332 24678889999999999874
No 323
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=94.38 E-value=0.38 Score=45.41 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE---e--e----ccCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ---G--E----LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~---g--D----ae~LPf~~~ 176 (274)
.....+.++++|| .|+|. |.++..+++... ..|+++|.+++-++.+++ +.-..++. . + +.++. ++
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~l~~~~--~~ 252 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATECINPRDQDKPIVEVLTEMT--DG 252 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCeecccccccchHHHHHHHHh--CC
Confidence 3456788999999 76643 444444555433 458999999998888854 43222221 1 1 11121 35
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcC-CCCEEEEE
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLANRCS-PGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLK-PGGrlvIs 213 (274)
.+|+|+-..+- ..++.+..+.|+ +||++++.
T Consensus 253 ~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 253 GVDYAFEVIGS------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhccCCCEEEEE
Confidence 69999865331 356778888999 99999874
No 324
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=94.37 E-value=0.49 Score=44.46 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=59.2
Q ss_pred hCCCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCC------CCCCCCccEE
Q 023971 111 AGEIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYV------PDKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L------Pf~~~sFD~V 181 (274)
...+.++++|| .|+| .|.++..+++..... |++++-+++..+.+++ +.-..++..+-..+ ...+..+|+|
T Consensus 182 ~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 182 AADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LGATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred cccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 34567889999 7554 244455555543334 9999999998888754 33222222211111 0124569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+...+- ...+.++.+.|+++|+++..
T Consensus 261 ld~vg~------~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEALGK------PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEeCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 865321 13678888999999999874
No 325
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.07 E-value=0.033 Score=48.62 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=59.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHH-HHHHhCCCc---eEEEeeccCCCCCCCCccEEEecccCcC--
Q 023971 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLA-GIKEKYDTV---KCWQGELIYVPDKWGPLDVVFLYFLPAM-- 189 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~-~Ar~k~~~v---~~~~gDae~LPf~~~sFD~V~~~f~l~~-- 189 (274)
+.+++ +|...=.+-......+.++|+-|+..+--++ ..+.+...+ +|. .++ -...++||.+.|...+-+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~-~~~---~~y~~~fD~~as~~siEh~G 77 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA-KNW---QKYAGSFDFAASFSSIEHFG 77 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH-HHH---HHhhccchhhheechhcccc
Confidence 56788 8888766554444555578999987753221 222232211 111 111 123477999876543322
Q ss_pred ------CCCH---HHHHHHHHHhcCCCCEEEEEcCCChh
Q 023971 190 ------PFPL---DQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 190 ------~~d~---~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
+-|| .+++.++.++|||||+|+++-|.|..
T Consensus 78 LGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 78 LGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 1122 26788899999999999998887653
No 326
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=94.01 E-value=0.48 Score=44.50 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=62.2
Q ss_pred HHhCCCCCCCeEE-EEcC-chHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSIS-SEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sF 178 (274)
.....+.++++|| .|+| .|..+..+++.... .|++++-+++..+.+++ +.-..++..+- ..+. ....+
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~~~vv~~~~~~~~~~l~~~~-~~~~v 252 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGATHTVNASEDDAVEAVRDLT-DGRGA 252 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCCeEEeCCCCccHHHHHHHHc-CCCCC
Confidence 3446778899999 8765 25555566655433 59999999998887753 33212222111 1111 24569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ..++.++.+.|++||+++..
T Consensus 253 d~vld~~~~------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 253 DYAFEAVGR------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CEEEEcCCC------hHHHHHHHHHhhcCCeEEEE
Confidence 988854321 35678889999999999874
No 327
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=94.00 E-value=0.48 Score=45.08 Aligned_cols=95 Identities=9% Similarity=-0.037 Sum_probs=59.0
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEe------e----ccCCCCCCCCc
Q 023971 112 GEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQG------E----LIYVPDKWGPL 178 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~g------D----ae~LPf~~~sF 178 (274)
..+.++++|| .|+|. |..+..+++.... .|+++|.+++-++.+++- .--.++.. + +.++. ....+
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~~~~v~~~~~~~~~~~~~v~~~~-~g~gv 276 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GADYVFNPTKMRDCLSGEKVMEVT-KGWGA 276 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCCEEEcccccccccHHHHHHHhc-CCCCC
Confidence 4778999999 76543 3333344444333 799999999877777663 21111111 0 11222 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+...+ +...++.++.+.|+++|+++..
T Consensus 277 Dvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 277 DIQVEAAG-----APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CEEEECCC-----CcHHHHHHHHHHHHcCCEEEEE
Confidence 99886533 2346788889999999999863
No 328
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.97 E-value=1.8 Score=42.66 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=59.9
Q ss_pred HHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023971 105 IDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
+..+++..++ -.|.+|+ +|+|. |......++....+|+++|.++.-...|+.. ..... +.++. -...|+|
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~--G~~v~--~leea---l~~aDVV 254 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD--GFRVM--TMEEA---AKIGDIF 254 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc--CCEeC--CHHHH---HhcCCEE
Confidence 3455555443 5788999 99998 6666655554336899999988765555432 22221 22221 1346998
Q ss_pred EecccCcCCCCHHHHHH-HHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+..-+ . ..++. +....+|||++++..
T Consensus 255 ItaTG-----~-~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 255 ITATG-----N-KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EECCC-----C-HHHHHHHHHhcCCCCcEEEEE
Confidence 87532 2 34454 588899999999875
No 329
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=93.96 E-value=0.53 Score=43.23 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccCCCCCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~LPf~~~sFD~ 180 (274)
+....+.++++|| .|+|. |..+..+++. ...+|++++-+++-++.+++ +.--.++... .+.+-...+.+|.
T Consensus 155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADLTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcEEecccccccHHHHHHHhcCCCcE
Confidence 3556788999999 88654 5556666664 23689999999999999954 4321222211 0111101124785
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+.... . ...+.+..+.|++||+++..
T Consensus 234 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 234 AVVTAV-----A-KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEEeCC-----C-HHHHHHHHHhccCCCEEEEE
Confidence 543321 1 35688889999999999873
No 330
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.051 Score=47.72 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHH-HHHhCC-CcEEEEeCcHHHHHHHHHhC-CC-------c---eEE-EeeccCC
Q 023971 107 QIISAGEIDESSKVL-VSISSEEFVDR-VVESSP-SLLLVVHDSLFVLAGIKEKY-DT-------V---KCW-QGELIYV 171 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~-L~~~~~-~~V~gVD~S~~ML~~Ar~k~-~~-------v---~~~-~gDae~L 171 (274)
.+++..+.-.|.+|| +|.|---++-. ++...+ ..|.--|-.++-++-.++-. .+ + ++. .++- .
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq--s 97 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ--S 97 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH--H
Confidence 344444444567899 99985444444 444445 78888898888776655421 11 1 111 1221 2
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023971 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
..+.+.||.|+++-.+-+-+-.+...+-+.+.|+|-|+-++..|.....++++
T Consensus 98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF 150 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKF 150 (201)
T ss_pred HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHH
Confidence 33567999999995543433445667788999999999988877644455544
No 331
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.88 E-value=0.13 Score=48.86 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=56.8
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC-----C
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP-----D 173 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP-----f 173 (274)
++.+++.+.+.++...+ .--|.|--+..+++..+ ++|+|+|-.+++++.|+++.. ++.++.++..+++ .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 56788888889988889 77788878888888755 999999999999999998853 5788888877755 2
Q ss_pred -CCCCccEEEec
Q 023971 174 -KWGPLDVVFLY 184 (274)
Q Consensus 174 -~~~sFD~V~~~ 184 (274)
....+|.|++=
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 34688998854
No 332
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.82 E-value=1.3 Score=45.63 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023971 117 SSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
..+|+ +|||. |.......+.....++.+|.+++.++.+++ .+.+.+.||+.+.. ..-+..|+|++.. .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~d- 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI--DD- 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--CC-
Confidence 35788 99997 655444333322489999999999999976 35778999998854 2235788888753 22
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.....-+..|.+.|.-+++..
T Consensus 475 ~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 475 PQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEE
Confidence 12234445667778888887763
No 333
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=93.65 E-value=0.79 Score=42.37 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---e----ccCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---E----LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D----ae~LPf~~~sF 178 (274)
.....+.++++|| .|+|. |..+..+++... .+|+++|.+++.++.+++ +.--.++.. + +.++. .+..+
T Consensus 159 ~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (345)
T cd08286 159 VLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK-LGATHTVNSAKGDAIEQVLELT-DGRGV 236 (345)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCCceeccccccHHHHHHHHh-CCCCC
Confidence 3445678899999 66533 334444555433 579999999988887765 321111211 1 11121 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+ . ...+..+.+.|+++|+++..
T Consensus 237 d~vld~~g-----~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAVG-----I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECCC-----C-HHHHHHHHHhccCCcEEEEe
Confidence 99986532 2 34678888999999999863
No 334
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.64 E-value=0.6 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023971 115 DESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
-++.+|+ +|+|. |..+.. |...+...|+.+|.+++-.+...++++. ..+ +.+++...-...|+|+.+-....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~--~~~~~~~~l~~aDvVi~at~~~~-- 250 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAV--PLDELLELLNEADVVISATGAPH-- 250 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEE--eHHHHHHHHhcCCEEEECCCCCc--
Confidence 4678999 98876 443333 3332436899999998876655565653 222 22222222245799998744322
Q ss_pred CHHHHHHHHHHhcCCCCEEEE
Q 023971 192 PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvI 212 (274)
+...+.++.+..+.+|+++|
T Consensus 251 -~~~~~~~~~~~~~~~~~~vi 270 (311)
T cd05213 251 -YAKIVERAMKKRSGKPRLIV 270 (311)
T ss_pred -hHHHHHHHHhhCCCCCeEEE
Confidence 23444444433433567776
No 335
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.63 E-value=1 Score=44.63 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=55.7
Q ss_pred CCC-CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023971 113 EID-ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~-~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
++. .|.+|+ +|+|. |..+...++....+|+.+|.++.-...|... ..... +.+++ -...|+|+..-+
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~v~--~l~ea---l~~aDVVI~aTG--- 276 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFRVM--TMEEA---AELGDIFVTATG--- 276 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCEec--CHHHH---HhCCCEEEECCC---
Confidence 443 788999 99997 5555444443225899999998766555442 22221 22222 136899987532
Q ss_pred CCCHHHHHH-HHHHhcCCCCEEEEE
Q 023971 190 PFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+ ..++. +..+.+|+|+.++..
T Consensus 277 --~-~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 277 --N-KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred --C-HHHHHHHHHhcCCCCCEEEEc
Confidence 2 33554 788899999988773
No 336
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.31 Score=47.54 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCC-----ceE----EEeeccCCCCCCCCccE
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDT-----VKC----WQGELIYVPDKWGPLDV 180 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~-----v~~----~~gDae~LPf~~~sFD~ 180 (274)
++.+ .++| ||.|.|.-+-++...-| ..++-+..|+..-++.-.-..+ ..+ ++-|-..||. ...+++
T Consensus 111 dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 111 DFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred CcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 3444 4699 99999976666655445 6788888888776664432211 122 2333334553 355666
Q ss_pred EEecccCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023971 181 VFLYFLPAMP---FPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 181 V~~~f~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|+..--+-.. .....-++.+...+.|||.|||.++...
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 6654322221 1223467888999999999999765443
No 337
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=93.48 E-value=0.77 Score=42.43 Aligned_cols=97 Identities=10% Similarity=-0.087 Sum_probs=61.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-cCCC-----CCCCCccEE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-IYVP-----DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-e~LP-----f~~~sFD~V 181 (274)
....+.++++|| .|+|. |.++..+++....+|++++-+++..+.+++ +.--.++...- .+++ ...+.+|+|
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-LGAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-hCCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 345678889999 88653 455555555433689999999999888854 43222222111 1111 112279999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+...+- ...+.+..+.|+++|+++..
T Consensus 238 i~~~g~------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 238 VDALGI------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEcCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 865321 35677889999999999863
No 338
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.42 E-value=0.16 Score=46.82 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=64.7
Q ss_pred CeEE-EEcCchHHHHHHHHh--C--C------CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCCc
Q 023971 118 SKVL-VSISSEEFVDRVVES--S--P------SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGPL 178 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~--~--~------~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~sF 178 (274)
.||+ +|.-.|.-...|.++ . + ..|++||+-+ | .-.+++..+|||++... |..+.-
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-----aPI~GV~qlq~DIT~~stae~Ii~hfggekA 116 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-----APIEGVIQLQGDITSASTAEAIIEHFGGEKA 116 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-----CccCceEEeecccCCHhHHHHHHHHhCCCCc
Confidence 5899 999999887777654 1 1 1299999854 3 23568899999998754 667899
Q ss_pred cEEEeccc-----CcCCCC------HHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFL-----PAMPFP------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~-----l~~~~d------~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+|--. +|-+.+ +-.||.-..+||||||.||--
T Consensus 117 dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 117 DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99998733 443321 124666778999999999863
No 339
>PLN02702 L-idonate 5-dehydrogenase
Probab=93.42 E-value=1.4 Score=41.37 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=60.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEE-E---eeccC----CC-CCCCC
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCW-Q---GELIY----VP-DKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~-~---gDae~----LP-f~~~s 177 (274)
....+.++++|| .|+|. |.++..+++... ..|+++|.+++-++.+++-.-..... . .+..+ +. .....
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGG 254 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCC
Confidence 456788899999 87653 455555555433 46899999998888776532111111 0 11110 10 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-..+- ..++.++.+.|+++|+++..
T Consensus 255 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 255 IDVSFDCVGF------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 8998864221 24788889999999999864
No 340
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.41 E-value=0.29 Score=48.48 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=70.7
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC---CCCCCc
Q 023971 110 SAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP---DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP---f~~~sF 178 (274)
..+..++|.||| +|+-.|-=+-+++.. .. +.|+|.|-+..-+...++.. .+......|..++| +. ++|
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC-ccc
Confidence 346789999999 998887444444443 22 79999999999888877653 34566778887777 33 389
Q ss_pred cEEE----ecc-cCcC-------CCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023971 179 DVVF----LYF-LPAM-------PFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~----~~f-~l~~-------~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|-|. |+- ++.+ ..+ .++.|-.....+||||.||-++
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9997 221 1111 100 1345556678899999999864
No 341
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.35 E-value=1.4 Score=45.22 Aligned_cols=103 Identities=11% Similarity=0.193 Sum_probs=64.4
Q ss_pred CeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023971 118 SKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 118 ~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
.+|+ +|+|. |..... |.+.+ ..++++|.+++-++.+++ .+...+.||+.+.. ..-+..|+|++.. .+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIVITC--NEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--CCH
Confidence 4677 77776 443332 33333 589999999999999876 35778899998743 2235788887652 221
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023971 191 FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
+-....-...|.+.|..+++.. ..++...+.+++.
T Consensus 476 -~~n~~i~~~~r~~~p~~~IiaR-a~~~~~~~~L~~~ 510 (601)
T PRK03659 476 -EDTMKIVELCQQHFPHLHILAR-ARGRVEAHELLQA 510 (601)
T ss_pred -HHHHHHHHHHHHHCCCCeEEEE-eCCHHHHHHHHhC
Confidence 2223444567778899898874 2333333444433
No 342
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=93.33 E-value=1.2 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=58.7
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~ 180 (274)
+....+.++++|| .|+ +.|..+..+++....++++++-+. .++.+++ +. +.++.-..+. .. .....+|+
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LG-ADTVILRDAPLLADAKALGGEPVDV 246 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh-cC-CeEEEeCCCccHHHHHhhCCCCCcE
Confidence 4456788999999 887 235555555554335788988665 7777754 33 2222111000 00 12356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.++.+.|+++|+++.
T Consensus 247 vi~~~g-------~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 247 VADVVG-------GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred EEecCC-------HHHHHHHHHHhccCCEEEE
Confidence 986543 1367788899999999985
No 343
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=93.33 E-value=0.8 Score=41.53 Aligned_cols=94 Identities=11% Similarity=0.039 Sum_probs=61.8
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe---e-c-cCC--CCCCCCccEE
Q 023971 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG---E-L-IYV--PDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D-a-e~L--Pf~~~sFD~V 181 (274)
..+.++++|| .|+ +.|..+..+++.....++.++-+++..+.+++ +.--.++.. | . +.+ ......+|++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAAIILIRYPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEecCChhHHHHHHHHHhCCCCceEE
Confidence 5678899999 874 45777777766543567779999999999854 542222211 1 0 000 0123569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+ ...+.++.+.|+++|+++..
T Consensus 215 i~~~~-------~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 215 LDCVG-------GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred EECCc-------hHHHHHHHHHhccCCeEEEE
Confidence 86543 25778888999999999873
No 344
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.33 E-value=0.65 Score=40.30 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCC----------CCCCC
Q 023971 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LP----------f~~~s 177 (274)
.+.+|| .|++. .++.. |++.+ .+|++++-+++=++.+.+. ..++.++++|+.+-. ..-+.
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356888 77754 34333 33444 5899999998766555332 235778888876532 01245
Q ss_pred ccEEEecccCcCCC---C--------------HHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPF---P--------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~---d--------------~~~al~el~RvLKPGGrlvIs 213 (274)
+|.++.+.+..... + +-.+++.+.+.+++||++++.
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 79998775432211 1 112345556667789988874
No 345
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.7 Score=40.90 Aligned_cols=69 Identities=12% Similarity=-0.088 Sum_probs=47.1
Q ss_pred eEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCC-----CC------CCCccEE
Q 023971 119 KVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVP-----DK------WGPLDVV 181 (274)
Q Consensus 119 rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LP-----f~------~~sFD~V 181 (274)
+|| .|+++| .++..|++++ .+|+++|-+++-++...+..+ ++.++++|+.+.. +. .+.+|+|
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v 81 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence 577 665543 2344455555 589999999988887776654 5788899987632 00 4678999
Q ss_pred EecccCc
Q 023971 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 82 i~~ag~~ 88 (260)
T PRK08267 82 FNNAGIL 88 (260)
T ss_pred EECCCCC
Confidence 9886653
No 346
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.25 E-value=0.13 Score=42.60 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=53.7
Q ss_pred ceEEEeeccC-CCCCCCCccEEEec-ccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccC
Q 023971 161 VKCWQGELIY-VPDKWGPLDVVFLY-FLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDL 236 (274)
Q Consensus 161 v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~f 236 (274)
++++.||+.+ |+.-+..||+|+.- |.+.-.++. .+.+++++|.++|||.++-...
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~--------------------- 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS--------------------- 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec---------------------
Confidence 4678899966 56556899999976 666432221 4899999999999998875211
Q ss_pred CCHHHHHHHHHhCCCcEeEEEec-CCeEEEEEE
Q 023971 237 PDQMTLQKAAGNHCFQIDNFVDE-SGFYLVVLK 268 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~-~~~yl~v~~ 268 (274)
...+++.|.++||.+....-. ...-+++..
T Consensus 92 --a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 92 --AGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred --hHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 135778899999987766542 222344443
No 347
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=93.12 E-value=1.1 Score=41.45 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeec----cCCC-CCCCCccEEEecc
Q 023971 114 IDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGEL----IYVP-DKWGPLDVVFLYF 185 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa----e~LP-f~~~sFD~V~~~f 185 (274)
..++++|| .|+|+ |.++..+++... ..|++++.+++-++.+++ +.-..++..+- +.+. ...+.+|+|+-..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCcEEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 34788999 76553 444555555433 479999999998888854 43212221110 0111 1112689998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...+.++.+.|+++|+++..
T Consensus 252 g~------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 252 NN------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CC------HHHHHHHHHHhhcCCeEEEE
Confidence 32 34688889999999999874
No 348
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=93.08 E-value=0.94 Score=41.61 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=53.0
Q ss_pred CCCeEE-E--EcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEecc
Q 023971 116 ESSKVL-V--SISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-v--GcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~f 185 (274)
++.++| + |+|+ |.++..+++....+|++++.+++-++.+++ +..-.++..+-+++. .....+|+|+-+.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~ 220 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-IGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAV 220 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEECCCccHHHHHHHHhCCCCCcEEEECC
Confidence 455677 6 3332 444555555433589999999999888876 332222221111111 1224689998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- .......+.|++||++++.
T Consensus 221 g~-------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 221 GG-------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred Cc-------HHHHHHHHhhCCCCEEEEE
Confidence 41 2345567789999999873
No 349
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=93.06 E-value=1.1 Score=40.78 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=61.7
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccE
Q 023971 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~ 180 (274)
...+.++++|| .|. +.|..+..+++....+|++++-++...+.+++.+.--.++..+ +.++- .+.+|+
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~ 217 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDV 217 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceE
Confidence 34677889999 874 3466666666653368999999998888887644422222211 11121 256999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.+..+.|+++|+++.
T Consensus 218 vi~~~g-------~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 218 YFDNVG-------GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred EEEcch-------HHHHHHHHHhcCCCceEEE
Confidence 886533 1367888899999999986
No 350
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=93.05 E-value=1.3 Score=40.73 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=61.7
Q ss_pred HHhCCCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++++|| .|+| .|.++..+++....+ |++++-+++..+.+++ +..-.++..+ +.++. .+..+
T Consensus 158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~-~g~~~~~~~~~~~~~~~i~~~~-~~~~v 235 (343)
T cd08235 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK-LGADYTIDAAEEDLVEKVRELT-DGRGA 235 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCCcEEecCCccCHHHHHHHHh-CCcCC
Confidence 3445788999999 8765 355555565553346 9999999998888753 3321222211 11111 23458
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ...+.++.+.|+++|+++..
T Consensus 236 d~vld~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 236 DVVIVATGS------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CEEEECCCC------hHHHHHHHHHhhcCCEEEEE
Confidence 999864331 35778888999999999873
No 351
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.94 E-value=0.98 Score=41.81 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=57.2
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEe
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~ 183 (274)
...++++|| .|+|+ |.++..+++.... .|++++-+++=.+.+++ +.--.++..+ +.++. ..+.+|+|+-
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~vd~vld 237 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK-MGADVVINPREEDVVEVKSVT-DGTGVDVVLE 237 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCcceeeCcccccHHHHHHHc-CCCCCCEEEE
Confidence 346788999 66654 5555566665434 68888888776666654 3211111111 11111 2357999986
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+- ..+..++.+.|++||++++.
T Consensus 238 ~~g~------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 238 MSGN------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCC------HHHHHHHHHHhccCCEEEEE
Confidence 5321 35678888999999999874
No 352
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=92.90 E-value=1.7 Score=38.41 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--CCCCCccEEEecccC
Q 023971 113 EIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--DKWGPLDVVFLYFLP 187 (274)
Q Consensus 113 ~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l 187 (274)
.+.++++|| .|+ | .|..+..+++....+|+.++.+. ..+.+++ +.--.++...-.+.. .....+|+|+...+-
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~ 218 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGADEVIDYTKGDFERAAAPGGVDAVLDTVGG 218 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCCCEEEeCCCCchhhccCCCCceEEEECCch
Confidence 477889999 886 2 35555555554335788888777 6777643 331222221111111 233568988854221
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
....++.+.|+++|+++..
T Consensus 219 -------~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 219 -------ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred -------HHHHHHHHHHhcCcEEEEE
Confidence 2677788899999999864
No 353
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.68 E-value=1.7 Score=38.89 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=60.7
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----C-CCCCCCccEEEe
Q 023971 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----V-PDKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----L-Pf~~~sFD~V~~ 183 (274)
..+.++++|| .|+ +.|..+..+++....+|++++.+++-.+.+++ +. +..+..+-.. + .. ...+|+|+-
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~i~~~-~~~~d~vl~ 214 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-LG-ADEVVIDDGAIAEQLRAA-PGGFDKVLE 214 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC-CcEEEecCccHHHHHHHh-CCCceEEEE
Confidence 4578889999 886 34666666766543689999999988888854 33 2222111111 1 11 457999985
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+ ...+.++.+.|+++|+++..
T Consensus 215 ~~~-------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 215 LVG-------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCC-------hHHHHHHHHHhccCCEEEEE
Confidence 432 24678888999999999863
No 354
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.65 E-value=0.25 Score=48.24 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh
Q 023971 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k 157 (274)
++.+++.++++|| |+.|......+| ..+|.+|++||+++.-++..+=|
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL-~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYL-LAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHH-hcCCceEEEEeCCHHHHHHHHHH
Confidence 3457899999999 877766666665 45678999999999988776655
No 355
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=92.64 E-value=1.4 Score=40.77 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=57.8
Q ss_pred CCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeecc-------CCCCCCCCccEEE
Q 023971 113 EIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELI-------YVPDKWGPLDVVF 182 (274)
Q Consensus 113 ~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-------~LPf~~~sFD~V~ 182 (274)
...++.+|| .|+| .|..+..+++....+ |++++-+++-.+.+++... -.++..+.. ++. ..+.+|+|+
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~-~~~~~d~vl 235 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-TYVVNPFKEDVVKEVADLT-DGEGVDVFL 235 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-cEEEcccccCHHHHHHHhc-CCCCCCEEE
Confidence 356788999 6654 244555555543344 8999989888887765322 112211111 111 235699998
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-+.+- ..++.++.+.|+++|+++..
T Consensus 236 d~~g~------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 236 EMSGA------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred ECCCC------HHHHHHHHHhhcCCCEEEEE
Confidence 65321 35788899999999999874
No 356
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=92.51 E-value=1.3 Score=39.26 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=59.9
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCccE
Q 023971 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sFD~ 180 (274)
...+.++++|| .|+ +.|..+..+++.....|++++.+++..+.+++ +.--.++..+- ..+. ....+|+
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 208 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-AGADHVINYRDEDFVERVREIT-GGRGVDV 208 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-CCCCEEEeCCchhHHHHHHHHc-CCCCeeE
Confidence 45677899999 884 34666666666533689999999999988854 43212222111 1111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+.+.+- ..+.+..+.|+++|+++.
T Consensus 209 vl~~~~~-------~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 209 VYDGVGK-------DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred EEECCCc-------HhHHHHHHhhccCcEEEE
Confidence 9864331 356677788999999985
No 357
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.50 E-value=0.53 Score=44.62 Aligned_cols=157 Identities=8% Similarity=0.026 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhCCCC--CCCeEE-EEcCchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhC---C----CceEEEee-
Q 023971 100 EHIQRIDQIISAGEID--ESSKVL-VSISSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKY---D----TVKCWQGE- 167 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~--~~~rVL-vGcGTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~---~----~v~~~~gD- 167 (274)
....|+.+++...... ..-++| ||||.-.+-+.|..+. .-+++|.|+++.-++.|++.. + .+++++-.
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 4446899988765332 245788 9999988877776542 379999999999999999752 2 35665322
Q ss_pred ccC----CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhc----CC-----CCEEEEEcC-------CCh-hHHHHH--
Q 023971 168 LIY----VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRC----SP-----GARVVISHP-------QGR-EALQKQ-- 224 (274)
Q Consensus 168 ae~----LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvL----KP-----GGrlvIs~~-------~gr-~~l~~~-- 224 (274)
-.. +-..++.||..+|+=-+ ..+.+++.....|-. +| .....++-. .|. ..+.++
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPF--y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ 241 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPF--YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIK 241 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-------SS--------------------------------TTTTHHHHTHHHHHHHHHH
T ss_pred ccccchhhhcccceeeEEecCCcc--ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHH
Confidence 111 22345789999998211 123444444333333 11 223333210 010 112221
Q ss_pred -HhhCc------ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023971 225 -RKQFP------DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 225 -~~~~~------~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
...+. ..-+...-+-..|.+.+++.|-..+...+
T Consensus 242 ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 242 ESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp HHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEE
Confidence 11111 11234556678899999999876555444
No 358
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.45 E-value=0.47 Score=41.76 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCC-----C-----C
Q 023971 113 EIDESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPD-----K-----W 175 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf-----~-----~ 175 (274)
..-++.+|| .|++ |.++..+ ++++ .+|++++-+++.++...+..++ +.++.+|+.+... + -
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 334667889 6654 5455444 4444 5899999999888776665543 4778888765331 1 1
Q ss_pred CCccEEEecccC
Q 023971 176 GPLDVVFLYFLP 187 (274)
Q Consensus 176 ~sFD~V~~~f~l 187 (274)
+.+|+|+.+.+.
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 478999987654
No 359
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.42 E-value=1.5 Score=40.79 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=54.0
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|. ||+|. | .++..|.+.+. .+|+++|.+++-++.+++...... ...+.++ .-+..|+|+.+.-.. ..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~---~~~~aDvViiavp~~---~~ 79 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAE---AVKGADLVILCVPVG---AS 79 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHH---HhcCCCEEEECCCHH---HH
Confidence 5788 99987 3 44555655553 489999999998887765321111 1112111 124579998774332 23
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 023971 194 DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvI 212 (274)
..+++++...++||+.++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 5677777778888875544
No 360
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=92.40 E-value=1.6 Score=39.34 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHhCCCCCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCcc
Q 023971 109 ISAGEIDESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD 179 (274)
.....+.++.+|| .|.|. |..+..++.....+|+.++.+++-++.+++......+-..+ +..+. ....+|
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d 237 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELT-GKRGVD 237 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHh-CCCCCc
Confidence 3446778889999 88754 55555555543368999999998888775432211111111 00111 134689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++.+.+- ..+.++.+.|+++|+++..
T Consensus 238 ~~i~~~g~-------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 238 VVVEHVGA-------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred EEEECCcH-------HHHHHHHHHhhcCCEEEEE
Confidence 99876542 3567778889999999873
No 361
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=92.36 E-value=0.91 Score=42.99 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---e----ccCCCCCCCCcc
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---E----LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D----ae~LPf~~~sFD 179 (274)
....+.++++|| .|+|. |..+..+++... .+|+++|.+++-++.+++- .. ..+.. + +.++. ...+|
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~-g~-~~v~~~~~~~~~~i~~~~--~~~~d 245 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI-GA-IPIDFSDGDPVEQILGLE--PGGVD 245 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC-eEeccCcccHHHHHHHhh--CCCCC
Confidence 456778899999 77764 555555655433 3799999999988888753 21 11111 1 11121 24689
Q ss_pred EEEecccCc----CC-CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPA----MP-FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~----~~-~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+-. +. .+....+.++.+.|+++|++++.
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 998654321 11 14456789999999999999763
No 362
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=92.32 E-value=1.6 Score=38.84 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=59.3
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEE
Q 023971 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V 181 (274)
...+.++.+|| .|| +.|..+..+++.....|++++.+++..+.+++. .--.++..+-.+.. .....+|.+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL-GADHVIDYRDPDLRERVKALTGGRGVDVV 212 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc-CCceeeecCCccHHHHHHHHcCCCCcEEE
Confidence 45677889999 998 345555555554335899999999998888653 21112211111110 123468998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+.+- ..+..+.+.++++|+++..
T Consensus 213 ~~~~g~-------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 213 YDPVGG-------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EECccH-------HHHHHHHHhhccCCEEEEE
Confidence 865431 3456667889999999863
No 363
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.26 E-value=3.7 Score=39.76 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=57.8
Q ss_pred CCeEE-EEcCchHHHHHHHH---hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCc
Q 023971 117 SSKVL-VSISSEEFVDRVVE---SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~---~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~ 188 (274)
..+|+ +|+|. ++..+++ .....|+++|.+++.++.++++.+++.++.||+.+.- ..-+.+|+|++...
T Consensus 231 ~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~-- 306 (453)
T PRK09496 231 VKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN-- 306 (453)
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC--
Confidence 46788 88754 4444333 2225899999999999999998888889999986532 22357888876432
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. .+..-....++|.+.+. +++.
T Consensus 307 ~-~~~n~~~~~~~~~~~~~-~ii~ 328 (453)
T PRK09496 307 D-DEANILSSLLAKRLGAK-KVIA 328 (453)
T ss_pred C-cHHHHHHHHHHHHhCCC-eEEE
Confidence 1 12333444556667554 4433
No 364
>PLN02494 adenosylhomocysteinase
Probab=92.21 E-value=0.73 Score=46.38 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=60.2
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023971 104 RIDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
-++.+++..++ -.|.+|+ +|+|. |..+...++....+|+++|.++.-...|... ...+. +.+++ -...|+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~--G~~vv--~leEa---l~~ADV 312 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME--GYQVL--TLEDV---VSEADI 312 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc--CCeec--cHHHH---HhhCCE
Confidence 35566666554 5678999 99997 6555555443225899999998755455432 12211 22221 135799
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+.+-+-++ -+..+..+.+||||.|+..
T Consensus 313 VI~tTGt~~-----vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 313 FVTTTGNKD-----IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred EEECCCCcc-----chHHHHHhcCCCCCEEEEc
Confidence 987543322 2336677789999999874
No 365
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.17 E-value=1.5 Score=42.53 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHH-HHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC--CCCCC
Q 023971 105 IDQIISAGEIDESSKVL-VSISSEEFVDRV-VES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY--VPDKW 175 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L-~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~--LPf~~ 175 (274)
+-..+..+++++|++|. +|||.=-++... ++. +..+|+|||+.++=++.|++- ....++.. |+-+ .-..+
T Consensus 174 ~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f-GAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 174 IGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF-GATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred hHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc-CCceeecchhhhhHHHHHHHhcC
Confidence 34667778999999999 999984343332 222 348999999999999999874 22222221 1111 11233
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.-.|.+|-.-+ +. ++++.....+.++|+.+|
T Consensus 253 gG~d~~~e~~G--~~----~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 253 GGADYAFECVG--NV----EVMRQALEATHRGGTSVI 283 (366)
T ss_pred CCCCEEEEccC--CH----HHHHHHHHHHhcCCeEEE
Confidence 46777764432 22 366666667888999988
No 366
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.16 E-value=0.18 Score=47.88 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCCC--CCCCCcc
Q 023971 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYVP--DKWGPLD 179 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~LP--f~~~sFD 179 (274)
.+....+|| ||-|-|-+.+..++... ..++-+|+....++..++-. +.+....||.-.+- .+.++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 445667999 99999988777665533 78899999888777777643 35788889975542 2469999
Q ss_pred EEEeccc-CcCC--C-CHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFL-PAMP--F-PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~-l~~~--~-d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+.-.. +--. . =.+..++.+.+.|||||.+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 9985421 1000 0 1235677889999999999884
No 367
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.15 E-value=0.48 Score=45.12 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCC---
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPD--- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf--- 173 (274)
-+++.++.+.+.++...+ .--|.|--+.+++++.+ ++++|+|-.+.+|+.|+++. +++.++++...++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHH
Confidence 467889999999998888 88888889999988865 78999999999999999875 258888887666542
Q ss_pred --CCCCccEEEec
Q 023971 174 --KWGPLDVVFLY 184 (274)
Q Consensus 174 --~~~sFD~V~~~ 184 (274)
.-+.+|.|..-
T Consensus 91 ~~~i~~vDGiL~D 103 (314)
T COG0275 91 ELGIGKVDGILLD 103 (314)
T ss_pred hcCCCceeEEEEe
Confidence 23588888743
No 368
>PRK06196 oxidoreductase; Provisional
Probab=92.15 E-value=0.84 Score=42.14 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=48.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccE
Q 023971 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.+.+|| .|++ |-++..+ ++++ .+|++++-+++-++.+.+...++.++++|+.+.. ...+..|+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAG-AHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence 346788 7754 4454444 4444 5899999998877776666666888899987643 11257899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9988764
No 369
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=92.12 E-value=1.4 Score=39.86 Aligned_cols=97 Identities=8% Similarity=-0.028 Sum_probs=59.9
Q ss_pred HHhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCcc
Q 023971 109 ISAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD 179 (274)
+....+.++++|| .|+ | .|..+..+++.....++.+.-+.+..+.+++ ..--.++..+-..+. .....+|
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~d 210 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-LGIGPVVSTEQPGWQDKVREAAGGAPIS 210 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-cCCCEEEcCCCchHHHHHHHHhCCCCCc
Confidence 3446788999999 775 3 3666666666533578888888887777765 321122222111110 1234699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ..+.+..+.|+++|+++..
T Consensus 211 ~v~d~~g~-------~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 211 VALDSVGG-------KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EEEECCCC-------hhHHHHHHhhcCCcEEEEE
Confidence 99865442 2356778889999999863
No 370
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=92.07 E-value=1.4 Score=40.35 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEe
Q 023971 113 EIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~ 183 (274)
.+.++++|| .|+|+ |.++..+++... .+|++++-+++-.+.+++ +.--.++..+ ..++. .+..+|+|+-
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~~-~~~~~dvvld 241 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-LGADHVLNASDDVVEEVRELT-GGRGADAVID 241 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-hCCcEEEcCCccHHHHHHHHh-CCCCCCEEEE
Confidence 466789999 88654 334444555433 589999999988887743 4321122111 11122 2346999986
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+- ...+.+..+.|+++|+++..
T Consensus 242 ~~g~------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 242 FVGS------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred cCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 4331 35678888999999999864
No 371
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=92.06 E-value=1.8 Score=39.80 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=60.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----------CCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----------YVPDKW 175 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----------~LPf~~ 175 (274)
+....+.++++|| .|+|. |..+..+++. +...+++++-+++.++.+++ +....++..+-+ .+ ...
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~-~~~ 231 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA-MGADIVVDPAADSPFAAWAAELAR-AGG 231 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCcEEEcCCCcCHHHHHHHHHHH-hCC
Confidence 4556788999999 76532 3334444444 32458899999999988865 332222221111 11 123
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+-..+ . ...+.++.+.|+++|+++..
T Consensus 232 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 232 PKPAVIFECVG-----A-PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 56999985432 1 14678888899999999874
No 372
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.71 E-value=1.5 Score=41.05 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=58.1
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-Eeecc------CCCCCCCCccEEEecccC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELI------YVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae------~LPf~~~sFD~V~~~f~l 187 (274)
.+|+ +|+|. | .++.+|.+.+ ..|+.++-+.+-++..+++.. +... .++.. ..+...+.||+|+++- =
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~~G-l~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGG-LTLVEQGQASLYAIPAETADAAEPIHRLLLAC-K 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhcCC-eEEeeCCcceeeccCCCCcccccccCEEEEEC-C
Confidence 3789 99998 4 5566666655 489999999877777665321 1111 01100 1122235899998762 1
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. .+.+++++.+...+.|+..++..
T Consensus 80 ~--~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 80 A--YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred H--HhHHHHHHHHHhhCCCCCEEEEE
Confidence 1 25678999999999999877664
No 373
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.71 E-value=2.4 Score=42.89 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=58.2
Q ss_pred CeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023971 118 SKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 118 ~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
++|+ +|||. |.. +..|.+++ .+|+.||.+++.++.+++ .+...+.||+.+-- ..-+..|.|++... +.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~--~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE--RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP--NG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH--CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC--Ch
Confidence 5788 88887 433 33343344 589999999999999986 36888999998732 22357887765421 11
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
+....+-...|...|.-+++..
T Consensus 493 -~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 493 -YEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred -HHHHHHHHHHHHHCCCCeEEEE
Confidence 1122233445667888887764
No 374
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.70 E-value=2.9 Score=37.45 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCc
Q 023971 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
....++++|| .|++ .|..+..+++....+|++++-+++-++.+++ +.--..+. +.+++ .++.+|+|+-..+-
T Consensus 128 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~--~~~~~d~vl~~~g~- 202 (305)
T cd08270 128 GGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGAAEVVV-GGSEL--SGAPVDLVVDSVGG- 202 (305)
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEe-ccccc--cCCCceEEEECCCc-
Confidence 3444588999 8773 4555555555433689999999999988876 43212211 11122 22468999865331
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+.+..+.|+++|+++..
T Consensus 203 ------~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 203 ------PQLARALELLAPGGTVVSV 221 (305)
T ss_pred ------HHHHHHHHHhcCCCEEEEE
Confidence 3577788899999999863
No 375
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=1 Score=43.05 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhC--C-CcEEEEeCcHHHHHHH
Q 023971 115 DESSKVL-VSISSEEFVDRVVESS--P-SLLLVVHDSLFVLAGI 154 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~--~-~~V~gVD~S~~ML~~A 154 (274)
.....|+ +|||.-.+...|...+ . ..++-||+++-.-.+.
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 4556788 9999999999998876 3 6788889887766666
No 376
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=91.63 E-value=2.1 Score=40.66 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=57.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEe---e------ccCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQG---E------LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D------ae~LPf~~~ 176 (274)
+....+.++++|| .|+|. |..+..+++.... +|+++|.+++-++.+++ +..-.++.. + +.++. ..
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-lGa~~~i~~~~~~~~~~~~v~~~~--~~ 259 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLTEMT--DG 259 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEecccccchhHHHHHHHHh--CC
Confidence 4456788899999 86653 3444444444333 79999999999999955 432122211 1 11121 24
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHH-hcCCCCEEEEE
Q 023971 177 PLDVVFLYFLPAMPFPLDQVFETLAN-RCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~R-vLKPGGrlvIs 213 (274)
.+|+|+-..+- ..++.+..+ .+++||++++.
T Consensus 260 ~~d~vld~~g~------~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 260 GVDFSFEVIGR------LDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred CCeEEEECCCC------cHHHHHHHHhhccCCCEEEEE
Confidence 68988754321 345555444 45689999874
No 377
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=4.6 Score=37.93 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=65.7
Q ss_pred CCCeEE-EEcCchHHHHHHHH----hCC-CcEEEEeCcHHHHHHHH----HhCCCceE--EEeeccC----CCCCCCCcc
Q 023971 116 ESSKVL-VSISSEEFVDRVVE----SSP-SLLLVVHDSLFVLAGIK----EKYDTVKC--WQGELIY----VPDKWGPLD 179 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~----~~~-~~V~gVD~S~~ML~~Ar----~k~~~v~~--~~gDae~----LPf~~~sFD 179 (274)
.+...+ +|.|+-.=++.|.+ ++. .+.+.||+|...|+.-. ..||.++. ++||.+. +| ..+.==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 356788 99999766665544 333 78999999999996533 34777543 5676543 44 223333
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.++....+.|.. +....|..+..+|+||-.+.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 345556777752 3346678899999999999995
No 378
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.58 E-value=1.7 Score=33.95 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred cCchHHHHHHHHh---CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCCCCHHHH
Q 023971 124 ISSEEFVDRVVES---SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMPFPLDQV 196 (274)
Q Consensus 124 cGTG~l~~~L~~~---~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~~d~~~a 196 (274)
||.|.++..+++. ....|+.+|.+++-.+.++++. +.++.||+.+.. ..-+..|.|++... . ......
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--~-d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD--D-DEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS--S-HHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC--C-HHHHHH
Confidence 4555666655443 2138999999999999998776 778899987743 22367888876532 1 122344
Q ss_pred HHHHHHhcCCCCEEEEE
Q 023971 197 FETLANRCSPGARVVIS 213 (274)
Q Consensus 197 l~el~RvLKPGGrlvIs 213 (274)
+....|-+-|..+++..
T Consensus 79 ~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 79 IALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHCCCCeEEEE
Confidence 55567778888888774
No 379
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.56 E-value=2.3 Score=39.24 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=59.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
....+.++++|| .|||. |..+..+++... ..+++++-+++-.+.+++ +..-.++... +.++. .+..+|
T Consensus 162 ~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~ga~~v~~~~~~~~~~~i~~~~-~~~~~d 239 (345)
T cd08287 162 VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE-FGATDIVAERGEEAVARVRELT-GGVGAD 239 (345)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cCCceEecCCcccHHHHHHHhc-CCCCCC
Confidence 345778899999 77654 444555555543 459999988866666654 3321112111 11222 234689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+ . ...+..+.+.|+++|++++.
T Consensus 240 ~il~~~g-----~-~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 240 AVLECVG-----T-QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred EEEECCC-----C-HHHHHHHHHhhccCCEEEEe
Confidence 8885432 1 45788889999999999884
No 380
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.52 E-value=0.055 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=39.1
Q ss_pred CccEEEecccCcCC------CCHHHHHHHHHHhcCCCCEEEEEcCCC-------hhHHHHHHhhCcccccccCCCHHHHH
Q 023971 177 PLDVVFLYFLPAMP------FPLDQVFETLANRCSPGARVVISHPQG-------REALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 177 sFD~V~~~f~l~~~------~d~~~al~el~RvLKPGGrlvIs~~~g-------r~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
.||+|.|-.+.-|+ +-+...|+.+++.|+|||+|++. |+. +.........|.. +. + .++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE-pQ~w~sY~~~~~~~~~~~~n~~~--i~-l-rP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE-PQPWKSYKKAKRLSEEIRENYKS--IK-L-RPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTTS-HHHHHHHHH--------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe-CCCcHHHHHHhhhhHHHHhHHhc--eE-E-ChHHHH
Confidence 38999877443222 24557899999999999999985 431 0011112222221 22 2 234677
Q ss_pred HHHHh--CCCcEeEEEe
Q 023971 244 KAAGN--HCFQIDNFVD 258 (274)
Q Consensus 244 ~ll~~--aGF~~v~~~d 258 (274)
..+.+ .||..++...
T Consensus 76 ~~L~~~evGF~~~e~~~ 92 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEELG 92 (110)
T ss_dssp HHHTSTTT---EEEEE-
T ss_pred HHHHhcccceEEEEEcc
Confidence 77776 6997765443
No 381
>PRK12742 oxidoreductase; Provisional
Probab=91.46 E-value=1.9 Score=37.37 Aligned_cols=94 Identities=19% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCCeEE-EEcCchHHHH----HHHHhCCCcEEEEeC-cHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEe
Q 023971 116 ESSKVL-VSISSEEFVD----RVVESSPSLLLVVHD-SLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFL 183 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~-S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~ 183 (274)
.+.+|| .|++.| ++. .|++.+ .+|+.++. +++-++...++. ++.++.+|+.+.. ...+.+|+++.
T Consensus 5 ~~k~vlItGasgg-IG~~~a~~l~~~G-~~v~~~~~~~~~~~~~l~~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 5 TGKKVLVLGGSRG-IGAAIVRRFVTDG-ANVRFTYAGSKDAAERLAQET-GATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEecCCCHHHHHHHHHHh-CCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 356888 776443 333 344444 47777654 555555544443 3566777765421 11256899998
Q ss_pred cccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEE
Q 023971 184 YFLPAMPF-----PLD--------------QVFETLANRCSPGARVVI 212 (274)
Q Consensus 184 ~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvI 212 (274)
+.+..... +++ ...+++.+.++++|++++
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 129 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIII 129 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 86543221 111 123466677788898887
No 382
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=91.38 E-value=2.7 Score=37.97 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=62.4
Q ss_pred HHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCC
Q 023971 108 IISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~s 177 (274)
++....+.++++|| .|+ +.|..+..+++....+|++++-+++..+.+++ +.--.++...- .++ .....
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~ 211 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA-LGADVAVDYTRPDWPDQVREA-LGGGG 211 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCCEEEecCCccHHHHHHHH-cCCCC
Confidence 34456778899999 774 44666666666533689999999999888854 33212221110 111 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+ . ....+..+.|+++|+++..
T Consensus 212 ~d~vl~~~g-----~--~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 212 VTVVLDGVG-----G--AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred ceEEEECCC-----h--HhHHHHHHHhccCcEEEEE
Confidence 999986543 1 2357788999999999863
No 383
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.37 E-value=1.5 Score=39.05 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=43.9
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023971 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
+.++| .|++. .++.. |++.+ .+|+.+|-+++-++...+.. .++.++++|+.+... .-+..|+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAG-ARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788 66544 44444 44445 58999999887665555443 357788888865320 1246899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9988654
No 384
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.28 E-value=1.4 Score=40.47 Aligned_cols=83 Identities=18% Similarity=0.018 Sum_probs=53.2
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023971 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+|. ||+|. |.++..|.+.+ .+|+++|.+++.++.++++.- +.....+.+ .-...|+|+.+.-... ..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g~-~~~~~~~~~----~~~~aDlVilavp~~~---~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGL-VDEASTDLS----LLKDCDLVILALPIGL---LLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC-cccccCCHh----HhcCCCEEEEcCCHHH---HHH
Confidence 577 99887 56666776655 489999999999988876521 111111211 1245799998743322 346
Q ss_pred HHHHHHHhcCCCCEE
Q 023971 196 VFETLANRCSPGARV 210 (274)
Q Consensus 196 al~el~RvLKPGGrl 210 (274)
+++++...++|+-.+
T Consensus 73 ~~~~l~~~l~~~~ii 87 (279)
T PRK07417 73 PSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHhCCCCcEE
Confidence 778888888776433
No 385
>PRK06101 short chain dehydrogenase; Provisional
Probab=91.19 E-value=3.2 Score=36.44 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=41.9
Q ss_pred eEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC-------CCCCccEEEeccc
Q 023971 119 KVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD-------KWGPLDVVFLYFL 186 (274)
Q Consensus 119 rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf-------~~~sFD~V~~~f~ 186 (274)
+|| .|+. |-++. .|++++ .+|+.+|-+++.++...+...++.++++|+.+... .....|.++.+.+
T Consensus 3 ~vlItGas-~giG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 3 AVLITGAT-SGIGKQLALDYAKQG-WQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 567 6654 43444 444444 58999999988887766666678888998865320 0123577766654
No 386
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.11 E-value=1.8 Score=35.34 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=60.5
Q ss_pred EE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CC--ceEEEe-eccCCCCCCCCccEEEecccCcC
Q 023971 120 VL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DT--VKCWQG-ELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 120 VL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~--v~~~~g-Dae~LPf~~~sFD~V~~~f~l~~ 189 (274)
|+ +|+|. |.+....+.+....|+.++-++ -++..+++- +. ..+... .....+...+.+|+|+++- ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--Ka 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--KA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--SG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe--cc
Confidence 46 78876 5555544433336999999999 666655431 11 111111 1111123568999999872 11
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023971 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
.+.+.+++.+.+.+.|+..+++.+- |-+..+.+.+.+
T Consensus 78 -~~~~~~l~~l~~~~~~~t~iv~~qN-G~g~~~~l~~~~ 114 (151)
T PF02558_consen 78 -YQLEQALQSLKPYLDPNTTIVSLQN-GMGNEEVLAEYF 114 (151)
T ss_dssp -GGHHHHHHHHCTGEETTEEEEEESS-SSSHHHHHHCHS
T ss_pred -cchHHHHHHHhhccCCCcEEEEEeC-CCCcHHHHHHHc
Confidence 2567899999999999988877632 223334444444
No 387
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=91.11 E-value=2.4 Score=38.71 Aligned_cols=96 Identities=10% Similarity=-0.054 Sum_probs=60.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccE
Q 023971 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~ 180 (274)
+...+.++++|| .|. +.|.++..+++....+|++++.+++-.+.+++ +.--.++..+-.+++ .....+|+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 212 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKK-AGAWQVINYREENIVERVKEITGGKKVRV 212 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CCCCEEEcCCCCcHHHHHHHHcCCCCeEE
Confidence 345678899999 753 23666666666533689999999998888854 432222222111111 12356898
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+ ...+.++.+.|+++|+++..
T Consensus 213 vl~~~~-------~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 213 VYDSVG-------KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred EEECCc-------HHHHHHHHHHhccCCEEEEE
Confidence 875432 24567788899999999864
No 388
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=91.08 E-value=3.3 Score=38.05 Aligned_cols=96 Identities=9% Similarity=-0.047 Sum_probs=56.8
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC----C--CCCCCccE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV----P--DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L----P--f~~~sFD~ 180 (274)
....+.++++|| .|+|. |.++..+++... .+|++++-+++-.+.+++ +... .+..+-.++ - ...+.+|+
T Consensus 161 ~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 161 KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA-LGAE-PINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred HhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-hCCe-EEecCCcCHHHHHHHHhCCCCCCE
Confidence 335677889999 75432 333344444433 379999888777666654 4321 121111111 0 12356898
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ . ...+.+..+.|+++|+++..
T Consensus 239 vid~~~-----~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 239 VLEAVG-----G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEE
Confidence 885422 1 35688888999999999874
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.05 E-value=2 Score=40.21 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCc-hHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCcc
Q 023971 104 RIDQIISAGEID-ESSKVL-VSISS-EEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGT-G~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD 179 (274)
.+...++..... .+.+|+ +|+|. |..+...++ .+ .+|+++|.+++-++.+++. ..+++ +.++++..-..+|
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~--G~~~~--~~~~l~~~l~~aD 212 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM--GLSPF--HLSELAEEVGKID 212 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc--CCeee--cHHHHHHHhCCCC
Confidence 344444444433 578999 99986 333333333 34 5999999998766666542 23332 2223333335799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+... +. .-.-+++.+.++||+.++-
T Consensus 213 iVI~t~-p~-----~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTI-PA-----LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECC-Ch-----hhhhHHHHHcCCCCcEEEE
Confidence 999763 21 1234567778999887763
No 390
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=91.03 E-value=2.2 Score=39.35 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=57.6
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEEEec
Q 023971 115 DESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V~~~ 184 (274)
.++++|| .|+|. |.++..+++... ..|++++-+++-++.+++...+ .++... ..++. ..+.+|+|+-+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~~~~~~~-~~~~~d~v~d~ 239 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT-RAVNVAKEDLRDVMAELG-MTEGFDVGLEM 239 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHHHhc-CCCCCCEEEEC
Confidence 4788999 66654 555555555433 3688999999888777653211 122111 11121 24568999864
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- ...+.++.+.|+++|+++..
T Consensus 240 ~g~------~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 240 SGA------PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEE
Confidence 332 45788889999999999885
No 391
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=91.01 E-value=2.5 Score=39.22 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=57.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeec----cCCC--CCCCCccE
Q 023971 110 SAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL----IYVP--DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa----e~LP--f~~~sFD~ 180 (274)
....+.++++|| .|+|. |..+..+++. +...++++|-+++-++.+++ +.--.++..+- +++- .....+|+
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~vdv 246 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK-FGADVVLNPPEVDVVEKIKELTGGYGCDI 246 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH-cCCcEEecCCCcCHHHHHHHHhCCCCCCE
Confidence 456788899999 55533 3444445554 32568899999888776654 33111221110 0111 02235899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ . ...+.++.+.|+++|+++..
T Consensus 247 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 247 YIEATG-----H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred EEECCC-----C-hHHHHHHHHHhhcCCEEEEE
Confidence 886432 1 24678889999999999873
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.00 E-value=0.77 Score=42.34 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=76.5
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----ce-------------------E-EEeeccC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----VK-------------------C-WQGELIY 170 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----v~-------------------~-~~gDae~ 170 (274)
.+|. ||+|+ | .++..++..+ .+|+.+|.+++.++.++++..+ +. . ...|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE- 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH-
Confidence 4688 99997 3 4455555555 4899999999999876553211 00 0 111211
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--------------------c
Q 023971 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--------------------D 230 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--------------------~ 230 (274)
.-...|+|+.+... .....+.+++++.+.++|+.. +++...+- .+.++..... +
T Consensus 82 ---~~~~aDlVieav~e-~~~~k~~~~~~l~~~~~~~~i-l~S~tsg~-~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 82 ---SLSDADFIVEAVPE-KLDLKRKVFAELERNVSPETI-IASNTSGI-MIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred ---HhCCCCEEEEcCcC-cHHHHHHHHHHHHhhCCCCeE-EEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 12457999876422 222356888999999988764 45533321 2233321110 0
Q ss_pred cccccCCCH---HHHHHHHHhCCCcEeEEEecCCe
Q 023971 231 VIVSDLPDQ---MTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 231 ~si~~fps~---~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+.....-+. +.+..+++..|...+...|.++|
T Consensus 156 v~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgf 190 (291)
T PRK06035 156 VVRAALTSEETFNTTVELSKKIGKIPIEVADVPGF 190 (291)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCe
Confidence 011112233 34455778889988877666655
No 393
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.96 E-value=2.8 Score=38.67 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------C-----------ceEEEeeccCCCC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------T-----------VKCWQGELIYVPD 173 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------~-----------v~~~~gDae~LPf 173 (274)
.+|- ||+|+ | .++..++..+ .+|+++|.+++.++.++++.. . ......+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE--- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH---
Confidence 4677 99986 3 4455555555 489999999999887654311 0 0111122222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
-..-|+|+.+ ..-.......+++++...++|+..|+
T Consensus 81 -~~~aD~Viea-v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 -LRDADFIIEA-IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -hCCCCEEEEc-CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2446999876 33233345578888999898877554
No 394
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.94 E-value=2.1 Score=40.58 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=81.4
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCC--C-CccEEEec-----c---c
Q 023971 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKW--G-PLDVVFLY-----F---L 186 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~--~-sFD~V~~~-----f---~ 186 (274)
+++ +-||-|-+-.-+...+-.-+.++|+.+.-++.=+..++...++++|+.++..+. . .+|+++.. | +
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG 84 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAG 84 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhcC
Confidence 678 888888777667665546789999999999999999987777888887654322 1 79999955 2 2
Q ss_pred Cc-CCCCHH----HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023971 187 PA-MPFPLD----QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 187 l~-~~~d~~----~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
-+ ...|++ --+.++...++| -.|++-.- .+.+.. .-..-+++.+.|++.||.+
T Consensus 85 ~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV--~gl~~~-----------~~~~~~~i~~~L~~~GY~~ 142 (328)
T COG0270 85 KRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENV--KGLLSS-----------KGQTFDEIKKELEELGYGV 142 (328)
T ss_pred cccCCcCccceeeHHHHHHHHhhCC-CEEEEecC--chHHhc-----------CchHHHHHHHHHHHcCCcc
Confidence 23 445555 234566677888 34444322 122221 1234578999999999963
No 395
>PRK08219 short chain dehydrogenase; Provisional
Probab=90.92 E-value=1.6 Score=37.41 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=45.4
Q ss_pred CeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC------CCCCccEEEeccc
Q 023971 118 SKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD------KWGPLDVVFLYFL 186 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf------~~~sFD~V~~~f~ 186 (274)
.++| .|+ ||.++.. |+++ .+|+++|-+.+.++...+..+++.++++|+.+... .-+..|+|+.+.+
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAPT--HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHhh--CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 4688 665 4445444 4444 58999999988877776666678899999876321 1126899997755
Q ss_pred C
Q 023971 187 P 187 (274)
Q Consensus 187 l 187 (274)
.
T Consensus 81 ~ 81 (227)
T PRK08219 81 V 81 (227)
T ss_pred c
Confidence 4
No 396
>PRK08324 short chain dehydrogenase; Validated
Probab=90.86 E-value=1.2 Score=46.16 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=59.9
Q ss_pred CCCeEE-EEcCch--H-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCC----------CCCCCc
Q 023971 116 ESSKVL-VSISSE--E-FVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVP----------DKWGPL 178 (274)
Q Consensus 116 ~~~rVL-vGcGTG--~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LP----------f~~~sF 178 (274)
.+.+|| .|++.| . ++..|++.+ .+|+++|.+++-++.+.+.. .++.++++|+.+.. ...+.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 457888 775443 2 233344445 58999999998776665543 25777888875532 112478
Q ss_pred cEEEecccCcCCCC-------------------HHHHHHHHHHhcCC---CCEEEEE
Q 023971 179 DVVFLYFLPAMPFP-------------------LDQVFETLANRCSP---GARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d-------------------~~~al~el~RvLKP---GGrlvIs 213 (274)
|+|+.+.+...... ....++.+.+.+++ ||++++.
T Consensus 500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99998876433211 23445566666766 7888874
No 397
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.34 Score=44.67 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=55.6
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------------------ceEEEeeccCCCC
Q 023971 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------------------VKCWQGELIYVPD 173 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------------------v~~~~gDae~LPf 173 (274)
+|. ||+|+ +.++..|++.+ .+|+.+|.+++.++.++++... +++ ..| +..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~~ 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLD---LKA 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCc---HHH
Confidence 678 99986 34555565555 4899999999999987753211 111 112 211
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.-..-|+|+.+ .+-...-.+.+++++.+.++||..+++.
T Consensus 78 ~~~~aD~Vi~a-vpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 78 AVADADLVIEA-VPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hhcCCCEEEEe-ccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 22457999865 2222212347788899999998777664
No 398
>PRK06500 short chain dehydrogenase; Provisional
Probab=90.83 E-value=2.3 Score=37.05 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023971 117 SSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+.+|| .|+ +|.++..+ ++++ .+|++++-+++-++...+..+ ++.++++|..+.. ...+.+|+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEG-ARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788 555 44454444 4444 589999998877766665544 4667788865532 11247899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9977654
No 399
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=90.82 E-value=4.9 Score=36.07 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023971 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++.+|| .|+|. |..+..+++....+ |++++-+++-++.+++ +.--.++... +.++. ....+
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~~-~~~~v 199 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE-LGATEVVTDDSEAIVERVRELT-GGAGA 199 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCCceEecCCCcCHHHHHHHHc-CCCCC
Confidence 3356778899999 76432 34444444443346 9999988887775543 3211122111 11111 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. ...+.++.+.|+++|+++..
T Consensus 200 d~vld~~g~------~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 200 DVVIEAVGH------QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CEEEECCCC------HHHHHHHHHHhccCCEEEEE
Confidence 999865322 34678888999999999874
No 400
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.82 E-value=1.8 Score=39.47 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCccEEEecccCc
Q 023971 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sFD~V~~~f~l~ 188 (274)
+|+ +|+|. | .++..|.+.+ .+|+.+|-+++-++..+++.-.+. .++. .+.. ....+|+|+++.-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~-~~~~~d~vila~k~- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLRLE--DGEITVPVLAADDPA-ELGPQDLVILAVKA- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCccc--CCceeecccCCCChh-HcCCCCEEEEeccc-
Confidence 578 99987 3 3455555555 489999998887777765422110 1111 1111 12679999877322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+.+++.+...+.++..++..
T Consensus 77 --~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 77 --YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred --ccHHHHHHHHhhhcCCCCEEEEe
Confidence 25688999999888887766653
No 401
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.80 E-value=1.9 Score=38.21 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=47.5
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023971 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
++.+|| .|++.| .++..|++.+ .+|+.+|-+++.++...+..+ ++.++++|+.+.- ...+..|+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 356888 776554 2233444445 589999999988887776654 4777888876532 11247899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.++
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 9988664
No 402
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=90.80 E-value=3.6 Score=37.82 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=60.8
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEE
Q 023971 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V 181 (274)
..+.++++|| .|+| .|..+..+++....+|+++.-+++-.+.+++ +.--.++... +.++. ....+|+|
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~-~~~~vd~v 238 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-LGADAFVDFKKSDDVEAVKELT-GGGGAHAV 238 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCcEEEcCCCccHHHHHHHHh-cCCCCCEE
Confidence 4788899999 8876 4666666666533589999999988887743 3311111111 11111 23568998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-..+- ...+.++.+.|+++|+++..
T Consensus 239 l~~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 239 VVTAVS------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred EEcCCc------hHHHHHHHHHhhcCCEEEEe
Confidence 842211 34677888999999999974
No 403
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.78 E-value=0.45 Score=39.22 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=50.6
Q ss_pred CCCeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023971 116 ESSKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+.+|| ||+|- | ..+.+|...+..+|+.+.-+.+-.+...+.+++..+...+.++++.....+|+|+.+-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 567999 99986 3 334456666656799999999887777777765555555666776555789999977433
No 404
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.63 E-value=4.2 Score=36.36 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=54.3
Q ss_pred CCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CCCCCCccEEEeccc
Q 023971 113 EIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PDKWGPLDVVFLYFL 186 (274)
Q Consensus 113 ~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf~~~sFD~V~~~f~ 186 (274)
.+.++++|| .|+ +.|..+..+++....+|++++-+ +..+.+++ +.--.++...-... ....+.+|+|+.+.+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRS-LGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHH-cCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 477899999 887 34666666666533589998855 77777744 33111111111111 123456999986543
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ........ ...|+++|+++..
T Consensus 218 ~----~~~~~~~~-~~~l~~~g~~i~~ 239 (319)
T cd08267 218 N----SPFSLYRA-SLALKPGGRYVSV 239 (319)
T ss_pred c----hHHHHHHh-hhccCCCCEEEEe
Confidence 2 11222322 2339999999874
No 405
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.57 E-value=2.8 Score=38.35 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=52.7
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEEEecccCc
Q 023971 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V~~~f~l~ 188 (274)
+|+ +|+|. | .++..|++.+ .+|+.++- ++-++..++..-.+.-..++ ..+.......+|+|+++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g-~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 578 98887 3 3455555555 48999998 77777666532111111111 11111112679999876322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+.+.+++++...++++..++.
T Consensus 79 --~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 79 --YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred --cCHHHHHHHHHhhcCCCCEEEE
Confidence 2568899999988888765554
No 406
>PRK09072 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1.5 Score=38.97 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC---------CCCCccE
Q 023971 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD---------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf---------~~~sFD~ 180 (274)
+.+|| .|++.| .++..|++++ .+|++++-+++-++...+.. .++.++.+|+.+... ..+..|+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 45788 776653 3444555555 58999999988776665442 357788888765321 1256899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 84 lv~~ag~ 90 (263)
T PRK09072 84 LINNAGV 90 (263)
T ss_pred EEECCCC
Confidence 9988654
No 407
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=90.44 E-value=1.5 Score=40.16 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHhCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccCCCCCCCCccEEEe
Q 023971 109 ISAGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~LPf~~~sFD~V~~ 183 (274)
+..+.+.++++|| .|++ .|..+..+++....+|++++-+++..+.+++ + ...++..+ .+++... +.+|+++-
T Consensus 155 ~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~~-~~~d~~ld 231 (334)
T PRK13771 155 LRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSK-Y-ADYVIVGSKFSEEVKKI-GGADIVIE 231 (334)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-H-HHHhcCchhHHHHHHhc-CCCcEEEE
Confidence 3345778899999 8883 3666666666543689999999998888754 2 11111111 1111111 25888886
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+ ...+.++.+.|++||+++..
T Consensus 232 ~~g-------~~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 232 TVG-------TPTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred cCC-------hHHHHHHHHHHhcCCEEEEE
Confidence 533 12567888889999999874
No 408
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.41 E-value=3.8 Score=36.53 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=57.8
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEE
Q 023971 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V 181 (274)
...+.++++|| .|+ |.|..+..+++....+++.++.+.+-++.+++ .+.-.++..+...++ .....+|++
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA-LGAAHVIVTDEEDLVAEVLRITGGKGVDVV 217 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCCCEEEecCCccHHHHHHHHhCCCCceEE
Confidence 45677888999 886 33455555554433689999999988887754 322222222211111 123469999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+.+- ....+..+.++++|+++.
T Consensus 218 i~~~~~-------~~~~~~~~~l~~~g~~v~ 241 (328)
T cd08268 218 FDPVGG-------PQFAKLADALAPGGTLVV 241 (328)
T ss_pred EECCch-------HhHHHHHHhhccCCEEEE
Confidence 865432 245666778999999985
No 409
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=90.37 E-value=3.2 Score=37.65 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=56.1
Q ss_pred CCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEeccc
Q 023971 116 ESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 116 ~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~~f~ 186 (274)
++.+|| .|+ | .|.++..+++....+|++++-+++-.+.+++ +.--.++..+ +..+ ....+|+|+-..+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-LGAKEVIPREELQEESIKPL--EKQRWAGAVDPVG 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-cCCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence 467999 887 2 3555556666533589999999998888865 3311111111 1122 2346898875432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|+++|+++..
T Consensus 223 -------~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 223 -------GKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -------HHHHHHHHHHhhcCCEEEEE
Confidence 24677888899999999874
No 410
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=90.31 E-value=4.5 Score=36.80 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=60.2
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEEE
Q 023971 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVVF 182 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V~ 182 (274)
...+.++++|| .|+ +.|..+..+++....+|++++-+++..+.+++ +.--.++..+-..+ ...+..+|+|+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~ 212 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS-LGCDRPINYKTEDLGEVLKKEYPKGVDVVY 212 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH-cCCceEEeCCCccHHHHHHHhcCCCCeEEE
Confidence 35678899999 874 34666666666544579999999998888854 43212222211110 01124689888
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 183 LYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+.+ ...+.++.+.|+++|+++.
T Consensus 213 ~~~g-------~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 213 ESVG-------GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred ECCc-------HHHHHHHHHHhccCCeEEE
Confidence 6432 2567888899999999985
No 411
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.17 E-value=0.92 Score=43.66 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=71.2
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023971 114 IDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
+.++ +|. +|-|. |.-++.++--..+.|+-+|+|.+-|.+...-+. ++..+.-...++-..-...|+|+.+-.+---
T Consensus 166 V~~~-kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPA-KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCc-cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3443 556 88887 555555544323799999999999988877654 3566666655565555779999987655555
Q ss_pred CCHHHHHHHHHHhcCCCCEEE
Q 023971 191 FPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlv 211 (274)
..|.-+.+|+..-+|||+.++
T Consensus 245 kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCceehhHHHHHhcCCCcEEE
Confidence 688899999999999999875
No 412
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.02 E-value=3.4 Score=39.22 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee---------------------
Q 023971 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--------------------- 167 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--------------------- 167 (274)
..+.++++|| .|+ +.|..+..+++....++++++.+++.++.+++ +.....+..+
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA-LGAEGVINRRDFDHWGVLPDVNSEAYTAWTK 267 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCCCEEEcccccccccccccccchhhhhhhh
Confidence 4677889999 886 33555666666533578899999999999876 4321111110
Q ss_pred --------ccCCCCCCC-CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 168 --------LIYVPDKWG-PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 168 --------ae~LPf~~~-sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.++. ... .+|+|+-..+ ...+.+..+.|+++|++++.
T Consensus 268 ~~~~~~~~v~~l~-~~~~g~d~vid~~g-------~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 268 EARRFGKAIWDIL-GGREDPDIVFEHPG-------RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred ccchHHHHHHHHh-CCCCCCeEEEECCc-------hHhHHHHHHHhccCCEEEEE
Confidence 00111 112 5898885432 13567778899999999874
No 413
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=89.95 E-value=3.1 Score=38.00 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=60.0
Q ss_pred HhCCCCC-----CCeEE-EEc--CchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCC
Q 023971 110 SAGEIDE-----SSKVL-VSI--SSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDK 174 (274)
Q Consensus 110 ~~~~~~~-----~~rVL-vGc--GTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~ 174 (274)
...++.+ +.+|| .|+ |.|..+..+++.. ..+|++++-+++..+.+++ +.--.++.-+ +.++ .
T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~i~~~--~ 213 (336)
T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE-LGAHHVIDHSKPLKAQLEKL--G 213 (336)
T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH-cCCCEEEECCCCHHHHHHHh--c
Confidence 3455555 88999 775 4566666666643 3589999999998888854 4321222101 1111 2
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+|+|+-..+ . ...+.+..+.|+++|+++..
T Consensus 214 ~~~vd~vl~~~~-----~-~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 214 LEAVSYVFSLTH-----T-DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCCCCEEEEcCC-----c-HHHHHHHHHHhccCCEEEEE
Confidence 346898874321 1 34677888999999999864
No 414
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.83 E-value=0.44 Score=46.56 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHhCCCceEEEeeccCCC--CCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023971 154 IKEKYDTVKCWQGELIYVP--DKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 154 Ar~k~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.|++...++++.+++++.. ..++++|.++..-..-|++ +.++.++++.|+++||||++.-
T Consensus 270 lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 270 LRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred HhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444566889999998854 3579999999987777764 3447788999999999999994
No 415
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.78 E-value=0.55 Score=44.92 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=49.5
Q ss_pred EEeeccCCCCCCCCccEEEecccCcCCCCH------------------------HHHHH---------------HHHHhc
Q 023971 164 WQGELIYVPDKWGPLDVVFLYFLPAMPFPL------------------------DQVFE---------------TLANRC 204 (274)
Q Consensus 164 ~~gDae~LPf~~~sFD~V~~~f~l~~~~d~------------------------~~al~---------------el~RvL 204 (274)
+-|....--|++++.|++++++++||.... ..+.+ -=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 346666655889999999999999996521 11111 114569
Q ss_pred CCCCEEEEEcC-------C---ChhHHHHHHhhCccc---------------ccccCCCHHHHHHHHHhCC-CcEeEE
Q 023971 205 SPGARVVISHP-------Q---GREALQKQRKQFPDV---------------IVSDLPDQMTLQKAAGNHC-FQIDNF 256 (274)
Q Consensus 205 KPGGrlvIs~~-------~---gr~~l~~~~~~~~~~---------------si~~fps~~eL~~ll~~aG-F~~v~~ 256 (274)
+|||+++++-. . ....++.+...|.+. ....+|+.+|+++.+++.| |.+...
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 99999999521 1 011223332222211 3467899999999998888 665433
No 416
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=89.71 E-value=1.3 Score=35.37 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=52.4
Q ss_pred eEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHH
Q 023971 119 KVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 119 rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
+||+.||+|.-+-.+++ .|-+.++++.-++++.+....+++...+.+|+|+..=-+ +-.+.
T Consensus 2 ~Ill~C~~GaSSs~la~-------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv------~~~~~ 62 (99)
T cd05565 2 NVLVLCAGGGTSGLLAN-------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM------ASYYD 62 (99)
T ss_pred EEEEECCCCCCHHHHHH-------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChH------HHHHH
Confidence 57789999965555543 366777777667888888888888777889999876333 33455
Q ss_pred HHHHhcCCCCEEEE
Q 023971 199 TLANRCSPGARVVI 212 (274)
Q Consensus 199 el~RvLKPGGrlvI 212 (274)
++...+.+-|.-+.
T Consensus 63 ~i~~~~~~~~ipv~ 76 (99)
T cd05565 63 ELKKDTDRLGIKLV 76 (99)
T ss_pred HHHHHhhhcCCCEE
Confidence 56666777666444
No 417
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=89.64 E-value=0.32 Score=46.42 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=43.2
Q ss_pred ceEEEeeccCCCCCC-------CCccEEEecccCcC-----CCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 161 VKCWQGELIYVPDKW-------GPLDVVFLYFLPAM-----PFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 161 v~~~~gDae~LPf~~-------~sFD~V~~~f~l~~-----~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
++|.+.|+..+..++ ...|+|+.-|.++= ...--+.|..+..+|+||-.|.|.+..|
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 689999998887643 35788887776542 3344578899999999999999976554
No 418
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=89.57 E-value=4.4 Score=36.06 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=58.8
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-Eeec-------cCCCCCCCC
Q 023971 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGEL-------IYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDa-------e~LPf~~~s 177 (274)
.....+.++++|| .|. |.|..+..+++....+|++++.+++..+.+++ .. ++.+ ...- ..+. ....
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~-~~~~ 208 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEA-LG-ADIAINYREEDFVEVVKAET-GGKG 208 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-CcEEEecCchhHHHHHHHHc-CCCC
Confidence 3456788899999 775 34555555555433689999999988887744 32 2211 1110 0111 2246
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+++.+.+ ...+.+..+.++++|+++.
T Consensus 209 ~d~~i~~~~-------~~~~~~~~~~l~~~g~~v~ 236 (325)
T TIGR02824 209 VDVILDIVG-------GSYLNRNIKALALDGRIVQ 236 (325)
T ss_pred eEEEEECCc-------hHHHHHHHHhhccCcEEEE
Confidence 999986543 1356677788999999986
No 419
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.50 E-value=0.77 Score=39.38 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE 156 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~ 156 (274)
-++++|+.. -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++..++|++
T Consensus 180 l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh-hccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 556777655 46789999 8899998877776666 489999999999999975
No 420
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.40 E-value=9.7 Score=35.03 Aligned_cols=138 Identities=13% Similarity=0.049 Sum_probs=75.6
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccC-CC--CCCCCcc-----E
Q 023971 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIY-VP--DKWGPLD-----V 180 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~-LP--f~~~sFD-----~ 180 (274)
..|+ +|||-=....++......+++=||.-. +++.-++.+ .+..++.+|+.+ +. +....|| +
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 4688 999997777666322115677777755 554444332 245677777641 11 1112232 3
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC--ChhH----HHHHHhhCccc---ccccCCCHHHHHHHHHhC
Q 023971 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ--GREA----LQKQRKQFPDV---IVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~--gr~~----l~~~~~~~~~~---si~~fps~~eL~~ll~~a 249 (274)
+++-.++-.+. +.++.|+.+.+...||+++++.... .... .....+..... ......+.+++..++++.
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER 241 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence 33333443432 3446788888888899999984321 1111 11111111100 111223579999999999
Q ss_pred CCcEeEE
Q 023971 250 CFQIDNF 256 (274)
Q Consensus 250 GF~~v~~ 256 (274)
||+....
T Consensus 242 Gw~~~~~ 248 (260)
T TIGR00027 242 GWRASEH 248 (260)
T ss_pred CCeeecC
Confidence 9987654
No 421
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.38 E-value=1.7 Score=37.75 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=44.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC-----C-----CC
Q 023971 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD-----K-----WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf-----~-----~~ 176 (274)
++.+|| .|+ +|.++..+ ++++ .+|++++-+++-++...++ ..++.++++|+.+... . -+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356788 665 44455444 4444 4899999888766655433 2457888888865321 1 15
Q ss_pred CccEEEecccC
Q 023971 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 78999987654
No 422
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.37 E-value=3.3 Score=36.97 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=47.0
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccEEE
Q 023971 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDVVF 182 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~V~ 182 (274)
+.++| .|++.| .++..|++++ .+|+.++-+++-++...+....+.++++|+.+.. ...+..|+++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG-ARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV 83 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45788 777554 2233444445 5899999999888776666656788888876532 1125789999
Q ss_pred ecccC
Q 023971 183 LYFLP 187 (274)
Q Consensus 183 ~~f~l 187 (274)
.+.+.
T Consensus 84 ~~ag~ 88 (273)
T PRK07825 84 NNAGV 88 (273)
T ss_pred ECCCc
Confidence 88654
No 423
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=89.25 E-value=4.3 Score=36.83 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=56.2
Q ss_pred hCCCCCCC-eEE-EEc-Cc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-cc-CC-CCCCCCccEEEe
Q 023971 111 AGEIDESS-KVL-VSI-SS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-LI-YV-PDKWGPLDVVFL 183 (274)
Q Consensus 111 ~~~~~~~~-rVL-vGc-GT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-ae-~L-Pf~~~sFD~V~~ 183 (274)
...+.+++ +|| .|+ |+ |.++..+++....+++.++-+++-.+.+++ ..--.++..+ .. .+ ....+.+|+|+-
T Consensus 139 ~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vld 217 (323)
T TIGR02823 139 RNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE-LGASEVIDREDLSPPGKPLEKERWAGAVD 217 (323)
T ss_pred hcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-cCCcEEEccccHHHHHHHhcCCCceEEEE
Confidence 34477888 999 887 32 555555655433578888888777777754 3211122111 00 00 011234898876
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+- ..+.++.+.|+++|+++..
T Consensus 218 ~~g~-------~~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 218 TVGG-------HTLANVLAQLKYGGAVAAC 240 (323)
T ss_pred CccH-------HHHHHHHHHhCCCCEEEEE
Confidence 5431 3467788889999999874
No 424
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.22 E-value=1.2 Score=41.59 Aligned_cols=87 Identities=18% Similarity=0.066 Sum_probs=54.8
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023971 118 SKVL-VSISS--EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|+ +|.|- |.++..|.+.+. ..|+|.|.+.+-++.|.+.- +..-..+.. .-......|+|+.+--+. -.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--v~d~~~~~~-~~~~~~~aD~VivavPi~---~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--VIDELTVAG-LAEAAAEADLVIVAVPIE---AT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--cccccccch-hhhhcccCCEEEEeccHH---HH
Confidence 4677 88776 566777777776 67899999998888876532 211111110 012335689999773332 34
Q ss_pred HHHHHHHHHhcCCCCEE
Q 023971 194 DQVFETLANRCSPGARV 210 (274)
Q Consensus 194 ~~al~el~RvLKPGGrl 210 (274)
.++++++...||||-.+
T Consensus 78 ~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHhcccCCCCCEE
Confidence 67888888778876544
No 425
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=89.20 E-value=4.2 Score=35.22 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=60.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC------CCCCCcc
Q 023971 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP------DKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP------f~~~sFD 179 (274)
+...+.++++|| .|+ +.|.++..+++....+|++++.+++..+.+++... ...++.....++. .....+|
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 181 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVD 181 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCce
Confidence 345778999999 763 34556666666543689999999888888876542 1111211100010 1134689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+-..+ . ..+.++.+.|+++|+++.
T Consensus 182 ~vi~~~~-----~--~~~~~~~~~l~~~g~~v~ 207 (293)
T cd05195 182 VVLNSLS-----G--ELLRASWRCLAPFGRFVE 207 (293)
T ss_pred EEEeCCC-----c--hHHHHHHHhcccCceEEE
Confidence 8885433 1 267778888999999986
No 426
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=89.15 E-value=3.4 Score=37.59 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccCCCCCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~LPf~~~sFD~ 180 (274)
+....+.++++|| +|+ | .|..+..+++....+|++++-+ +.++ ++.--.++..+ +..+. +.+|+
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~-~~g~~~~~~~~~~~~~l~~~~---~~~d~ 226 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLK-EFGADEVVDYDEVEEKVKEIT---KMADV 226 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHH-HhCCCeeecchHHHHHHHHHh---CCCCE
Confidence 3446788999999 886 3 3555555655433578888622 3342 23211111111 11221 56899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ ...+.+..+.|+++|+++..
T Consensus 227 vl~~~g-------~~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 227 VINSLG-------SSFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred EEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 886432 14788889999999999974
No 427
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.04 E-value=3.1 Score=40.81 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=54.8
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc-----e-----EE-EeeccCCCCCCCCccEEEe
Q 023971 118 SKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV-----K-----CW-QGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v-----~-----~~-~gDae~LPf~~~sFD~V~~ 183 (274)
.+|- ||.|- +.++..|++.+. +|+++|.+++-++..++....+ . .+ .|...... ..+.-|+|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEE
Confidence 3677 88875 355566666664 8999999999888654321110 0 00 00000000 1125799987
Q ss_pred cccCc-------CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 184 YFLPA-------MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 184 ~f~l~-------~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+..-- .......+++.+.+.|++|-.+++...
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 64321 112345677889999999777766433
No 428
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.03 E-value=3.2 Score=39.34 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccC-CC--CCCCCccE
Q 023971 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIY-VP--DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~-LP--f~~~sFD~ 180 (274)
.+..++++|++|| .|. |-|.++..|++.....++++--|++=.+.+++...+ +.+...|..+ +- .....+|+
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 3346788899999 663 346777778776323788888888777766665443 2322332221 21 12347999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-.-+- ..+.+..+.|++||+++..
T Consensus 215 v~D~vG~-------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 215 VLDTVGG-------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred EEECCCH-------HHHHHHHHHhccCCEEEEE
Confidence 9976443 4456677789999999883
No 429
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=89.01 E-value=5.8 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=58.4
Q ss_pred hCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec--------cCCCCCCCCccE
Q 023971 111 AGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL--------IYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa--------e~LPf~~~sFD~ 180 (274)
...+.++++|| .|+|. |..+..+++....+|+.++.+++-++.+++. ..-.++..+- ..+. ..+.+|+
T Consensus 155 ~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 232 (336)
T cd08276 155 LGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL-GADHVINYRTTPDWGEEVLKLT-GGRGVDH 232 (336)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEEEcCCcccCHHHHHHHHc-CCCCCcE
Confidence 34678888999 65532 4444444444336899999999988888763 2212221111 1111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++-+.+ ...+.+..+.|+++|+++..
T Consensus 233 ~i~~~~-------~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 233 VVEVGG-------PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred EEECCC-------hHHHHHHHHhhcCCCEEEEE
Confidence 985421 24677888999999999863
No 430
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.96 E-value=0.7 Score=42.39 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHhCCCCCCC--eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH---Hh---CC--------CceEEEeec
Q 023971 106 DQIISAGEIDESS--KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK---EK---YD--------TVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~~--rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar---~k---~~--------~v~~~~gDa 168 (274)
..++++++++++. +|| .-+|-|.=+..++..| ++|++++-|+-|-...+ ++ .+ .++.+.+|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3677888888875 899 8888887777676666 59999999998655443 22 11 368889998
Q ss_pred cC-CCCCCCCccEEEec
Q 023971 169 IY-VPDKWGPLDVVFLY 184 (274)
Q Consensus 169 e~-LPf~~~sFD~V~~~ 184 (274)
.+ |+..+++||+|.+-
T Consensus 142 ~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp CCHCCCHSS--SEEEE-
T ss_pred HHHHhhcCCCCCEEEEC
Confidence 77 66668999999865
No 431
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=88.93 E-value=3.2 Score=37.48 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=57.4
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEE
Q 023971 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V 181 (274)
..+.++++|| .|++ .|..+..+++....+++++.-+++-.+.+++ ..--.++..+ +..+. ....+|+|
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~v 211 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA-LGADEVIDSSPEDLAQRVKEAT-GGAGARLA 211 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh-cCCCEEecccchhHHHHHHHHh-cCCCceEE
Confidence 4567889999 8763 4666666666533688898888888888854 3211122111 11111 23569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+.+- ....++.+.|+++|+++.
T Consensus 212 l~~~g~-------~~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 212 LDAVGG-------ESATRLARSLRPGGTLVN 235 (323)
T ss_pred EECCCC-------HHHHHHHHhhCCCCEEEE
Confidence 865431 124566789999999985
No 432
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=88.92 E-value=4 Score=36.13 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=58.5
Q ss_pred hCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccE
Q 023971 111 AGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~ 180 (274)
...+.++.+|| .|++ .|..+..+++.....|+.++.+++.++.+++ ...-..+... +..+. ....+|+
T Consensus 134 ~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 211 (323)
T cd05276 134 LGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRA-LGADVAINYRTEDFAEEVKEAT-GGRGVDV 211 (323)
T ss_pred hcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCCCEEEeCCchhHHHHHHHHh-CCCCeEE
Confidence 35678889999 8863 4555555555433689999999999888854 3211111111 01111 1246999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.+.+- ..+....+.++++|+++..
T Consensus 212 vi~~~g~-------~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 212 ILDMVGG-------DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred EEECCch-------HHHHHHHHhhccCCEEEEE
Confidence 9876542 2255667789999999863
No 433
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=1.2 Score=43.28 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=48.8
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-----CCcEEEEeCcHHHHHHHHHhCCC
Q 023971 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-----PSLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-----~~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
||..-..|.-++++..+.+..-.++ +|.|+|.++..+++. . +.++.-|.+|++..+.=|+...+
T Consensus 58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4555556888888888877777888 999999987766542 2 27899999999988776666544
No 434
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.87 E-value=3.3 Score=40.59 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEeccc-CcCC
Q 023971 115 DESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFL-PAMP 190 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~-l~~~ 190 (274)
.++.+|+ +|||. |..+.. |...+...|+.+|.+++-.+...++++. ... +.+++...-..+|+|+.+-+ .+.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-~~~--~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-EAI--PLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-cEe--eHHHHHHHhccCCEEEECCCCCCcE
Confidence 4678999 99876 444433 3333435899999999877655555542 121 11222222246899997743 4444
Q ss_pred CCHHHHHHHHHHhcCCCCEEEE
Q 023971 191 FPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvI 212 (274)
.+. +.++.+.+.=+.++.++|
T Consensus 257 i~~-~~l~~~~~~~~~~~~vvi 277 (423)
T PRK00045 257 IGK-GMVERALKARRHRPLLLV 277 (423)
T ss_pred EcH-HHHHHHHhhccCCCeEEE
Confidence 343 334443221113456666
No 435
>PLN00203 glutamyl-tRNA reductase
Probab=88.85 E-value=1.7 Score=44.25 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc-cCcCCCC
Q 023971 117 SSKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMPFP 192 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~~d 192 (274)
+.+|+ ||+|. |.. +..|...+..+|+.++.+.+-.+...++++++.....+.++++..-...|+|+++- ..+.+-.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~ 345 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFL 345 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeC
Confidence 57899 99965 322 33343344357999999999888887777654333333334443346789998762 3333323
Q ss_pred HHHHHHHH
Q 023971 193 LDQVFETL 200 (274)
Q Consensus 193 ~~~al~el 200 (274)
.+.++++
T Consensus 346 -~e~l~~~ 352 (519)
T PLN00203 346 -KEHVEAL 352 (519)
T ss_pred -HHHHHHh
Confidence 3445554
No 436
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.84 E-value=3.6 Score=40.14 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=54.2
Q ss_pred eEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--------------ceEEEeeccCCCCCCCCccEEE
Q 023971 119 KVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--------------VKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 119 rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--------------v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+|- ||+|. |.-+..+...+ ..|+++|.+++-++.+++.... .++. .+ .+....-..-|+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t-~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQN-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFN-AT-LDKNEAYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE-Ee-cchhhhhcCCCEEE
Confidence 455 77664 43333333345 4899999999999988874311 1121 11 01111124568888
Q ss_pred eccc-Cc----CC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023971 183 LYFL-PA----MP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 183 ~~f~-l~----~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
.+.. .- .. ...+.+++++.+ ++||..+++......+..+++
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHH
Confidence 7632 20 11 233567778887 788766666433333333333
No 437
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.84 E-value=2.8 Score=36.59 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=53.2
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcH-HHHHHHHHh----CCCceEEEeeccCCCC----------CC
Q 023971 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSL-FVLAGIKEK----YDTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~-~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~ 175 (274)
.+.++| .|+. |-++..+ ++.+ .+|++++-+. ..++...++ ..++.++++|+.+.-. ..
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356788 7753 3344444 4444 4788887643 333333221 2356778888765321 11
Q ss_pred CCccEEEecccCcCC-------------CCHHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMP-------------FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~-------------~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+.+.+.... .-+...++.+.+.++.+|++++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 468998877543211 11235666666666677888763
No 438
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.78 E-value=2.8 Score=36.73 Aligned_cols=70 Identities=4% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCeEEEEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCCc
Q 023971 117 SSKVLVSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 117 ~~rVLvGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~sF 178 (274)
+.+|||-.|||.++.. |++.+ .+|++++-+++.++.+.+. ..++.++++|+.+... ..++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5577744455555444 44444 4899999998666554443 2346778888765331 12468
Q ss_pred cEEEecccC
Q 023971 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 86 d~vi~~ag~ 94 (262)
T PRK13394 86 DILVSNAGI 94 (262)
T ss_pred CEEEECCcc
Confidence 999987654
No 439
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.73 E-value=1.4 Score=39.91 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCC-CCeEE-EEcCchHHHHHHHHh-C---C-----CcEEEEeCcHHHHHHHHHhCCC
Q 023971 104 RIDQIISAGEIDE-SSKVL-VSISSEEFVDRVVES-S---P-----SLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 104 w~~~ll~~~~~~~-~~rVL-vGcGTG~l~~~L~~~-~---~-----~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
|+-...+..+-.. .-+|+ +|.|+|.++..+++. . | .+++-|+.|+.|.+.-+++..+
T Consensus 5 ~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 5 WIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5556666664322 35889 999999998877553 1 1 4799999999999888887654
No 440
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.70 E-value=2.4 Score=37.41 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCCC
Q 023971 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~s 177 (274)
.+.++| .|+++| .++..|++.+ .+|+.++-+++-++...++. .++.++++|+.+.. ...+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 356788 787655 3344455555 48999999887776655432 34667788875522 11257
Q ss_pred ccEEEecccCc
Q 023971 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
.|+++.+.+..
T Consensus 87 id~lv~~ag~~ 97 (253)
T PRK05867 87 IDIAVCNAGII 97 (253)
T ss_pred CCEEEECCCCC
Confidence 99999886653
No 441
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=88.56 E-value=2.1 Score=33.40 Aligned_cols=20 Identities=0% Similarity=-0.107 Sum_probs=14.2
Q ss_pred cCcCCCCHHHHHHHHHHhcC
Q 023971 186 LPAMPFPLDQVFETLANRCS 205 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLK 205 (274)
.+.+..|.++..+++..+|+
T Consensus 74 ~llt~~~~~~~~e~i~~~l~ 93 (94)
T PRK10310 74 PFVSGVGIEALQNKILTILQ 93 (94)
T ss_pred ecccccCHHHHHHHHHHHHc
Confidence 44455578888888887774
No 442
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.54 E-value=1.1 Score=40.87 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCC
Q 023971 129 FVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPG 207 (274)
Q Consensus 129 l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPG 207 (274)
++.+|.+.++ .+|+|.|.+++.++.|++.-- +.-...+.+.+ ..+|+|+.+--+. ...++++++...+++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-IDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-SSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHHCGS-TT
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-eeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhhhhcCCC
Confidence 4567877776 899999999999999976522 22222222333 3359998763322 2356677777767666
Q ss_pred CEEE
Q 023971 208 ARVV 211 (274)
Q Consensus 208 Grlv 211 (274)
+.++
T Consensus 73 ~iv~ 76 (258)
T PF02153_consen 73 AIVT 76 (258)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 5554
No 443
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.51 E-value=4 Score=36.43 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=55.8
Q ss_pred CCCeEE-EEcCc--h---HHHHHHHHhCCCcEEEEeCcHHH---HHHHHHhCCCceEEEeeccCCC----------CCCC
Q 023971 116 ESSKVL-VSISS--E---EFVDRVVESSPSLLLVVHDSLFV---LAGIKEKYDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGT--G---~l~~~L~~~~~~~V~gVD~S~~M---L~~Ar~k~~~v~~~~gDae~LP----------f~~~ 176 (274)
.+..|| .|.++ | .++..|++.+ .+|+.+|.+.+. ++..++..+.+.++++|+.+.. ...+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 356788 88654 3 3344555555 488888887543 3444444455556777865432 1226
Q ss_pred CccEEEecccCcCC---------CCH---HHH-----------HHHHHHhcCCCCEEEE
Q 023971 177 PLDVVFLYFLPAMP---------FPL---DQV-----------FETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~---------~d~---~~a-----------l~el~RvLKPGGrlvI 212 (274)
..|+++.+.+.... .+. ++. .+.+.+.++.+|+++.
T Consensus 88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~ 146 (258)
T PRK07533 88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLT 146 (258)
T ss_pred CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEE
Confidence 78999988664321 122 222 2455666777898866
No 444
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.46 E-value=1.2 Score=41.17 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=53.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--------CceE--------------EEeeccCCC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--------TVKC--------------WQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--------~v~~--------------~~gDae~LP 172 (274)
.+|- ||+|+ | .++..++..+ .+|+.+|.+++-++.++++.. ...+ ...|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~--- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA--- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH---
Confidence 3678 99986 3 3444555555 489999999998888765421 1111 122221
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
..-..-|+|+.+. +-...-...+++++...++++-.|+.
T Consensus 80 ~a~~~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 EAVKDADLVIEAV-PEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HHhcCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1124568888763 32222246778888888877765544
No 445
>PHA01634 hypothetical protein
Probab=88.44 E-value=2.8 Score=35.67 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-ee-ccCCCCCC
Q 023971 100 EHIQRIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GE-LIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gD-ae~LPf~~ 175 (274)
++..|+.---+...+ -.+.+|+ ||.+-|+-+.+.+-++...|+++..++.+.+..++.......+. |- -.+++-.=
T Consensus 11 ~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y 90 (156)
T PHA01634 11 ECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEY 90 (156)
T ss_pred cchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccC
Confidence 455566544333322 2457999 99999999988887877899999999999999988544322211 00 01234344
Q ss_pred CCccEEEe
Q 023971 176 GPLDVVFL 183 (274)
Q Consensus 176 ~sFD~V~~ 183 (274)
++||+.++
T Consensus 91 ~~~Di~~i 98 (156)
T PHA01634 91 EDVDIFVM 98 (156)
T ss_pred CCcceEEE
Confidence 66777664
No 446
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.38 E-value=1.2 Score=39.25 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCc
Q 023971 117 SSKVL-VSISS-EE-FVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 117 ~~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S 147 (274)
+.+|| +|||. |. ++..|++.+.++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899 99995 54 4555666665899999987
No 447
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.29 E-value=2.3 Score=37.14 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHH--HHHHHHHhCCCceEEEeeccCCCC----------CCCCcc
Q 023971 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLF--VLAGIKEKYDTVKCWQGELIYVPD----------KWGPLD 179 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~--ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD 179 (274)
.+.+|| .|++.| .++..|++.+ .+|++++-+.. ..+..++....+.++.+|+.+.-. ..+..|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 82 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID 82 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 356888 777554 2334444445 48999987652 222222222357788888765321 124689
Q ss_pred EEEecccC
Q 023971 180 VVFLYFLP 187 (274)
Q Consensus 180 ~V~~~f~l 187 (274)
+|+.+.+.
T Consensus 83 ~li~~ag~ 90 (248)
T TIGR01832 83 ILVNNAGI 90 (248)
T ss_pred EEEECCCC
Confidence 99987654
No 448
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=88.25 E-value=1.3 Score=41.05 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=80.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEEEecccC
Q 023971 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+.+.++|+ ||||.=-++..+....+ ..++|.|++..|++...+- .++.+....|...=+ .....|+...-=.+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 45568999 99999998888776655 7999999999999887753 245677777876654 35778998865344
Q ss_pred cCCCCHH-HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 188 AMPFPLD-QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 188 ~~~~d~~-~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+-++..+ .+--++...+. .=.++|+.|.- .+..-.+.+.. .-..++.+.+...||.+...+-.+.+
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtr--SL~gR~~gm~~------~y~~~fe~~~~~~~~~~~~~~~~~El 248 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTR--SLGGRNKGMEQ------TYSAWFEALAAERGWIVDRLTFGNEL 248 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------TTHHH------CHHHHHHHHCCTTCEEEEEEEETTEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEecccc--ccccCcccccc------CHHHHHHHhcccCCceeeeeecccce
Confidence 3332222 22233444442 34677776531 11111000000 11467788888888887776665553
No 449
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=88.21 E-value=1.8 Score=33.79 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred eEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHH
Q 023971 119 KVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 119 rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
+||+.||+|--+..+++ .|-+.++++.-++++...+..++....+.+|+|+++ + ...--+.
T Consensus 1 kIl~~Cg~G~sTS~~~~-------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~--P----qv~~~~~ 61 (96)
T cd05564 1 KILLVCSAGMSTSILVK-------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG--P----QVRYMLD 61 (96)
T ss_pred CEEEEcCCCchHHHHHH-------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC--h----hHHHHHH
Confidence 36799999986665533 244555555445777777777776556779999875 2 2233455
Q ss_pred HHHHhc-CCCCEEEEEc
Q 023971 199 TLANRC-SPGARVVISH 214 (274)
Q Consensus 199 el~RvL-KPGGrlvIs~ 214 (274)
++.+.+ +.|-.+.+.+
T Consensus 62 ~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 62 EVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHhccCCCcEEEcC
Confidence 555433 3455555543
No 450
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.21 E-value=2.6 Score=34.48 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHhCCC-CCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCcc
Q 023971 106 DQIISAGEI-DESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 106 ~~ll~~~~~-~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD 179 (274)
...++..++ ..+.+|+ +|||. ..++..|.+.+...|+.+|.+++-++...+++.. +.....|..++ -+..|
T Consensus 7 ~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D 83 (155)
T cd01065 7 VRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEAD 83 (155)
T ss_pred HHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCC
Confidence 344444444 4467899 99874 2334444443325799999998766665544432 11222232222 36789
Q ss_pred EEEeccc
Q 023971 180 VVFLYFL 186 (274)
Q Consensus 180 ~V~~~f~ 186 (274)
+|+++-.
T Consensus 84 vvi~~~~ 90 (155)
T cd01065 84 LIINTTP 90 (155)
T ss_pred EEEeCcC
Confidence 9998743
No 451
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.20 E-value=1.5 Score=40.19 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=76.9
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----------C------------CceEEEeeccCCCC
Q 023971 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----------D------------TVKCWQGELIYVPD 173 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----------~------------~v~~~~gDae~LPf 173 (274)
+|- ||+|+ +.++..++..+ ..|+++|.+++.++.++++. . +++ ...|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH---
Confidence 677 99986 45566666655 48999999999997655321 1 111 1223222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--------------------cccc
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--------------------DVIV 233 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--------------------~~si 233 (274)
-+..|+|+.+.-. ...-..++++++.+.++|+..+ ++...+- .+.++..... ++..
T Consensus 80 -~~~aDlVi~av~e-~~~~k~~~~~~l~~~~~~~~il-~s~ts~~-~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~ 155 (282)
T PRK05808 80 -LKDADLVIEAATE-NMDLKKKIFAQLDEIAKPEAIL-ATNTSSL-SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIR 155 (282)
T ss_pred -hccCCeeeecccc-cHHHHHHHHHHHHhhCCCCcEE-EECCCCC-CHHHHHHhhCCCcceEEeeccCCcccCccEEEeC
Confidence 2557999876332 2223458999999999998766 4433321 1222221110 0000
Q ss_pred ccCC---CHHHHHHHHHhCCCcEeEEEecCCe
Q 023971 234 SDLP---DQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 234 ~~fp---s~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..-- +.+.+..+++..|...+...|.+++
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~ 187 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAPGF 187 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCccCh
Confidence 1111 2345667888999887777666554
No 452
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=88.19 E-value=18 Score=33.10 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=53.2
Q ss_pred HHhCCCCCCCeEEE-EcC-chHHHHHHHHhCCCcEEEE--eCcHHHHHHHHHhCCCceEE---Eeec----cCCCCCCCC
Q 023971 109 ISAGEIDESSKVLV-SIS-SEEFVDRVVESSPSLLLVV--HDSLFVLAGIKEKYDTVKCW---QGEL----IYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVLv-GcG-TG~l~~~L~~~~~~~V~gV--D~S~~ML~~Ar~k~~~v~~~---~gDa----e~LPf~~~s 177 (274)
.....+.++++||| |+| .|..+..+++....+|+.+ +-+.+-++.+++ +. ++.+ ..|. ..+. ....
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~l~~~~-~~~~ 233 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE-LG-ADAVNGGEEDLAELVNEIT-DGDG 233 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH-hC-CcccCCCcCCHHHHHHHHc-CCCC
Confidence 34456788899994 432 1334444555433567666 334444554443 22 1111 1111 1111 2356
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-..+- ...+....+.|+++|+++..
T Consensus 234 vd~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 234 ADVVIECSGA------VPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCEEEECCCC------hHHHHHHHHHhhcCCEEEEE
Confidence 8998865321 35788889999999999963
No 453
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=88.17 E-value=3.4 Score=40.57 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCCCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc-cCc
Q 023971 113 EIDESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF-LPA 188 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~ 188 (274)
+..++.+|+ +|||. |..+.. |...+..+|+.+|-+.+..+...++++.. .+ +.++++..-..+|+|+++- ..+
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i--~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AV--KFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-Ee--eHHHHHHHHhhCCEEEECCCCCC
Confidence 445678999 99976 444333 33334368999999988765444454431 11 2223333335789999773 344
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+-+.+ .++.+.+ -++++.++|
T Consensus 253 ~ii~~e-~l~~~~~-~~~~~~~vi 274 (417)
T TIGR01035 253 PIVSKE-DVERALR-ERTRPLFII 274 (417)
T ss_pred ceEcHH-HHHHHHh-cCCCCeEEE
Confidence 443433 3333211 123455666
No 454
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=88.11 E-value=1.1 Score=35.20 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=44.5
Q ss_pred CeEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023971 118 SKVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 118 ~rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
.+||+.||+|--+..++. .|-+.++++.-++++...+..+++.....+|+|+.+=-+ +--+
T Consensus 4 ~~ILl~C~~G~sSS~l~~-------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi------~~~~ 64 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVN-------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQV------AYML 64 (95)
T ss_pred cEEEEECCCchhHHHHHH-------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchH------HHHH
Confidence 478899999966655532 355666665556777777777776555678999876222 3334
Q ss_pred HHHHHhcCC
Q 023971 198 ETLANRCSP 206 (274)
Q Consensus 198 ~el~RvLKP 206 (274)
.++...+.+
T Consensus 65 ~~i~~~~~~ 73 (95)
T TIGR00853 65 PDLKKETDK 73 (95)
T ss_pred HHHHHHhhh
Confidence 455444544
No 455
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.06 E-value=5.8 Score=36.97 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=50.4
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCCCCCCccEEEecccC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+|+ ||+|. | .++..|.+.+ ..|+.++-++. +..+++. .+..+....+..-+.....+|+|+.+- .
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL-K 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe-c
Confidence 5799 99987 4 4455565555 47777766652 2222221 111111111111222346799998762 2
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+ +..++++.+...++|++.++..
T Consensus 82 ~~--~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 82 TT--ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CC--ChHhHHHHHhhhcCCCCEEEEe
Confidence 11 3467888888889999987664
No 456
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.01 E-value=1.9 Score=39.28 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=62.2
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccC-CC--CCCCCccEE
Q 023971 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIY-VP--DKWGPLDVV 181 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~-LP--f~~~sFD~V 181 (274)
... ||||=|-++..|+...| ..++|+++--..-+-.++| ++++......+.. +| |..+..+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 467 99999999999988888 8899996655444433333 4556666555544 44 344444444
Q ss_pred Eeccc-CcCCCC-------HHHHHHHHHHhcCCCCEEEEEcC
Q 023971 182 FLYFL-PAMPFP-------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 182 ~~~f~-l~~~~d-------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+..|- +|+... -...+.|.+=+|++||.++..+.
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 44331 222111 12567888999999999988643
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=87.99 E-value=3.5 Score=36.87 Aligned_cols=68 Identities=10% Similarity=-0.037 Sum_probs=43.8
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC----------CCCCccEE
Q 023971 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD----------KWGPLDVV 181 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD~V 181 (274)
+.+|| .|++.| ++..++ +++ .+|++++-+++=++...+ .++.++++|+.+... ..+.+|+|
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G-~~V~~~~r~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQG-YTVYGAARRVDKMEDLAS--LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh--CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 45788 776443 444443 334 589999988876654433 247888888866431 12478999
Q ss_pred EecccCc
Q 023971 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 79 i~~ag~~ 85 (273)
T PRK06182 79 VNNAGYG 85 (273)
T ss_pred EECCCcC
Confidence 9887654
No 458
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=87.97 E-value=0.37 Score=46.01 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=83.9
Q ss_pred CCccccccccccccccccccccCCccchhHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHH-HHHHhCCCcEEEEeCcH
Q 023971 72 EGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI-DESSKVL-VSISSEEFVD-RVVESSPSLLLVVHDSL 148 (274)
Q Consensus 72 ~~~~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~-~L~~~~~~~V~gVD~S~ 148 (274)
.|=+.++. ++ |...||...+..++|. +....+.+.. ..++.|. +=+|-|.++. .|.+.+...|.|.|..+
T Consensus 156 ~gWV~~v~-NG-I~~~~d~t~~MFS~GN-----~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp 228 (351)
T KOG1227|consen 156 LGWVKHVQ-NG-ITQIWDPTKTMFSRGN-----IKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP 228 (351)
T ss_pred ccceeehh-cC-eEEEechhhhhhhcCc-----HHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH
Confidence 33444443 24 5556999999999983 3333333333 2345666 9999999988 78777778999999999
Q ss_pred HHHHHHHHhCC--Cc----eEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCE
Q 023971 149 FVLAGIKEKYD--TV----KCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGAR 209 (274)
Q Consensus 149 ~ML~~Ar~k~~--~v----~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGr 209 (274)
.-++..|+... ++ ....||- ..|-.+...|-|.....+ .-++-.--..++|||.|-
T Consensus 229 ~svEaLrR~~~~N~V~~r~~i~~gd~-R~~~~~~~AdrVnLGLlP----Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 229 WSVEALRRNAEANNVMDRCRITEGDN-RNPKPRLRADRVNLGLLP----SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhccc-cccCccccchheeecccc----ccccchHHHHHHhhhcCC
Confidence 99998887643 33 3445774 445567888888765443 445555556667888655
No 459
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.90 E-value=2.5 Score=37.19 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCC
Q 023971 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~ 176 (274)
.+.+|| .|. +|.++..+ ++++ .+|+++|-+++.++...++. .++.++++|+.+.. ..-+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 356888 774 45454444 4444 58999999988776555443 23667788876522 1124
Q ss_pred CccEEEecccC
Q 023971 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999988654
No 460
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.83 E-value=4.6 Score=34.90 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=43.5
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCC-----C-----CCCCc
Q 023971 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVP-----D-----KWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LP-----f-----~~~sF 178 (274)
+.+|| +| |||.++..++ +.+ .+|++++-+++-++...+.. ..+.++++|+.+.- + .-+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46788 77 4665655544 334 48999998887665554433 45778888876421 0 11478
Q ss_pred cEEEecccC
Q 023971 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 999977543
No 461
>PRK06128 oxidoreductase; Provisional
Probab=87.79 E-value=5.1 Score=36.63 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=51.7
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHH--HHHH----HHHhCCCceEEEeeccCCC----------CCC
Q 023971 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLF--VLAG----IKEKYDTVKCWQGELIYVP----------DKW 175 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~--ML~~----Ar~k~~~v~~~~gDae~LP----------f~~ 175 (274)
+.+|| .|++. -++.. |++.+ .+|+.++.+.+ -++. .++...++.++++|+.+.. ..-
T Consensus 55 ~k~vlITGas~-gIG~~~a~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADS-GIGRATAIAFAREG-ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCC-cHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 56788 77544 34444 44444 47777665432 2222 2222234667788876532 112
Q ss_pred CCccEEEecccCcCC----C--CH--------------HHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAMP----F--PL--------------DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~----~--d~--------------~~al~el~RvLKPGGrlvIs 213 (274)
+..|+++.+.+.... . +. -..++.+.+.+++||+++..
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 468999988764321 1 11 12445556667889998873
No 462
>PRK09242 tropinone reductase; Provisional
Probab=87.76 E-value=6.2 Score=34.76 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC--CceEEEeeccCCC----------CCCC
Q 023971 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD--TVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~--~v~~~~gDae~LP----------f~~~ 176 (274)
+.++| .|++.| .++..|++.+ .+|+.++-+.+-++...++ .+ ++.++++|+.+.. ..-+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788 776543 2333444445 4899999988877665543 22 4667788875421 1125
Q ss_pred CccEEEecccC
Q 023971 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
.+|+|+.+.+.
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 78999988664
No 463
>PRK08643 acetoin reductase; Validated
Probab=87.59 E-value=4.8 Score=35.39 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=43.7
Q ss_pred CCeEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCCC
Q 023971 117 SSKVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~s 177 (274)
+..+| .|+.+| ++. .|++.+ .+|+.+|-+.+.++.+.+.. .++.++++|+.+.. ...+.
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 34677 665443 444 444445 58999999887776655432 35677888886532 11256
Q ss_pred ccEEEecccC
Q 023971 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
.|+|+.+.+.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 8999988654
No 464
>PRK05993 short chain dehydrogenase; Provisional
Probab=87.56 E-value=4.1 Score=36.66 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=43.9
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----C------CCCCccE
Q 023971 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----D------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f------~~~sFD~ 180 (274)
+.+|| .|++.| ++.. |++++ .+|++++-+++-++..++ .++.++.+|+.+.- + ..+..|+
T Consensus 4 ~k~vlItGasgg-iG~~la~~l~~~G-~~Vi~~~r~~~~~~~l~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 4 KRSILITGCSSG-IGAYCARALQSDG-WRVFATCRKEEDVAALEA--EGLEAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH--CCceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 45788 776543 4444 44444 589999999888776554 25777888876521 0 1247899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 80 li~~Ag~ 86 (277)
T PRK05993 80 LFNNGAY 86 (277)
T ss_pred EEECCCc
Confidence 9988654
No 465
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.52 E-value=2.4 Score=39.13 Aligned_cols=100 Identities=10% Similarity=0.232 Sum_probs=63.3
Q ss_pred CeEE-EEcCc--hHHHHHHHHhC--C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023971 118 SKVL-VSISS--EEFVDRVVESS--P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~--~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
.+|. ||||. +.++..|.+.+ + .+|++.|.+++-++.+.+++. ++. ..|..++. ..-|+|+.+.-+ .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-~~~-~~~~~e~~---~~aDiIiLavkP---~ 74 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-ITI-TTNNNEVA---NSADILILSIKP---D 74 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-cEE-eCCcHHHH---hhCCEEEEEeCh---H
Confidence 3678 99997 45556666554 2 579999999988888776664 332 23333331 245999987655 3
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023971 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
+.+.+++++...+++ |.++|+-..| -.++.+.+.
T Consensus 75 ~~~~vl~~l~~~~~~-~~lvISi~AG-i~i~~l~~~ 108 (272)
T PRK12491 75 LYSSVINQIKDQIKN-DVIVVTIAAG-KSIKSTENE 108 (272)
T ss_pred HHHHHHHHHHHhhcC-CcEEEEeCCC-CcHHHHHHh
Confidence 457888888877765 5677764433 234555443
No 466
>PRK11524 putative methyltransferase; Provisional
Probab=87.40 E-value=1.8 Score=40.12 Aligned_cols=55 Identities=15% Similarity=-0.018 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
-++++|... -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++-.+.|++|...
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 456666554 36889999 9999998877776666 4999999999999999999753
No 467
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.24 E-value=2 Score=43.24 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=56.5
Q ss_pred HHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023971 106 DQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 106 ~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+++..+. -.|.+|+ +|+|. |..++..++....+|+++|.++.-...|.. .+++. .+.+++ -...|+|+
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~G~~~--~~leel---l~~ADIVI 314 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--EGYQV--VTLEDV---VETADIFV 314 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--cCcee--ccHHHH---HhcCCEEE
Confidence 445554332 3677899 99997 544444444322589999888765444433 23322 223222 24689999
Q ss_pred ecccCcCCCCHHHHH-HHHHHhcCCCCEEEEE
Q 023971 183 LYFLPAMPFPLDQVF-ETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al-~el~RvLKPGGrlvIs 213 (274)
..-+-.+ ++ ++....+|||+.|+-.
T Consensus 315 ~atGt~~------iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 315 TATGNKD------IITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ECCCccc------ccCHHHHhccCCCcEEEEc
Confidence 8744322 33 3666779999999874
No 468
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.84 E-value=7.7 Score=36.62 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=62.6
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE--------EeeccCCCCCCCCccEEEecccC
Q 023971 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW--------QGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~--------~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+|+ +|+|. |.++.+|.+.+ ..|+.+--++. ++..+++ ++... ......-+.....+|+|+..- =
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~--GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-K 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK--GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-K 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC--CeEEecCCCccccccccccChhhcCCCCEEEEEe-c
Confidence 688 99997 45556666655 46666666655 7777775 21111 111222234445899999762 1
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
. .+.+++++.+.+.++|...+++.+. |-+..+.+.+.+
T Consensus 77 a--~q~~~al~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~ 114 (307)
T COG1893 77 A--YQLEEALPSLAPLLGPNTVVLFLQN-GLGHEEELRKIL 114 (307)
T ss_pred c--ccHHHHHHHhhhcCCCCcEEEEEeC-CCcHHHHHHHhC
Confidence 1 2668999999999999998887642 233444444333
No 469
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.75 E-value=7.1 Score=37.87 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCch----HHHHHHHHh--C-C-CcEEEEeC----cHHHHHHHHHhCC------C--ce
Q 023971 104 RIDQIISAGEIDESSKVL-VSISSE----EFVDRVVES--S-P-SLLLVVHD----SLFVLAGIKEKYD------T--VK 162 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG----~l~~~L~~~--~-~-~~V~gVD~----S~~ML~~Ar~k~~------~--v~ 162 (274)
....+++.+.-...=+|+ +|.|.| .+...|+.+ + | -+||||+. +..-|+.+.++.. + ++
T Consensus 98 aNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 98 ANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred hhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 445777777666666889 999998 456677665 2 3 79999999 8888877776532 2 33
Q ss_pred EEE---eeccCC-----CCCCCCccEEEecccCcCCC-------CHHHHHHHHHHhcCCCCEEEE
Q 023971 163 CWQ---GELIYV-----PDKWGPLDVVFLYFLPAMPF-------PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 163 ~~~---gDae~L-----Pf~~~sFD~V~~~f~l~~~~-------d~~~al~el~RvLKPGGrlvI 212 (274)
|.. .+++++ -..++..=+|-+.+.+|+.. ++...+=...|-|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 333 344443 22223322333446667654 345556667789999866555
No 470
>PRK07680 late competence protein ComER; Validated
Probab=86.73 E-value=2.4 Score=38.75 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=56.1
Q ss_pred eEE-EEcCc--hHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023971 119 KVL-VSISS--EEFVDRVVESSP---SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+|. ||||. +.++..|.+.+. ..|++.|.+++-++.+.++++++... .|..++ -...|+|+.+.- ..+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~---~~~aDiVilav~---p~~ 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEV---ISQSDLIFICVK---PLD 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHH---HHhCCEEEEecC---HHH
Confidence 466 99887 345566655541 47999999998887777776555432 233332 135699987752 234
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 023971 193 LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs 213 (274)
..++++++...+++|. ++|+
T Consensus 75 ~~~vl~~l~~~l~~~~-~iis 94 (273)
T PRK07680 75 IYPLLQKLAPHLTDEH-CLVS 94 (273)
T ss_pred HHHHHHHHHhhcCCCC-EEEE
Confidence 5678888877787766 5553
No 471
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.65 E-value=15 Score=34.19 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc------eE-E-E--eeccCCCCCCCCccEEEecc
Q 023971 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV------KC-W-Q--GELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v------~~-~-~--gDae~LPf~~~sFD~V~~~f 185 (274)
+|. ||+|. | .++..|.+.+ .+|+.+|.++. .+..+++.-.+ +. + . ..+..-+.....+|+|+.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 688 99986 3 4555665655 48999998753 34444321111 00 0 0 00011112235789998764
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 186 LPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
- ..+.+++++++...++++-.++.
T Consensus 82 k---~~~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 82 K---SAATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred c---CcchHHHHHHHHhhCCCCCEEEE
Confidence 2 12457888999888887665443
No 472
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.64 E-value=5.9 Score=35.52 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=46.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC---------CCCCC
Q 023971 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP---------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP---------f~~~s 177 (274)
.+.++| .|++.| .++..|++.+ .+|+.+|.+++=++.+.++. .++.++++|+.+.. ...+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 356778 777665 2344555555 58999999887766655432 25778888876632 01257
Q ss_pred ccEEEecccC
Q 023971 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
.|+++.+.+.
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8999988654
No 473
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.59 E-value=4.3 Score=37.15 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCC----------CCCCC
Q 023971 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LP----------f~~~s 177 (274)
.+.+|| .|++.| ++.. |++.+ .+|+.++-+++-++...+..+ .+..+++|+.+.- ..-+.
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARG-AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456888 776554 4443 44444 589999999988877665543 2444557765421 11257
Q ss_pred ccEEEecccC
Q 023971 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
+|+|+.+.+.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999988765
No 474
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=86.54 E-value=5.1 Score=36.22 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccCCCCCCCCccEEEeccc
Q 023971 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~LPf~~~sFD~V~~~f~ 186 (274)
..+.++++|| .|. +.|..+..+++....+|++++-+++-.+.+++ +....++..+ .+.+-. ...+|+|+.+.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~d~v~~~~g 235 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKE-LGADYVIDGSKFSEDVKK-LGGADVVIELVG 235 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCCcEEEecHHHHHHHHh-ccCCCEEEECCC
Confidence 5678889999 775 33555544444433688999888887777744 2222222221 011111 125899886644
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. ..+.++.+.++++|+++..
T Consensus 236 ~-------~~~~~~~~~~~~~g~~v~~ 255 (332)
T cd08259 236 S-------PTIEESLRSLNKGGRLVLI 255 (332)
T ss_pred h-------HHHHHHHHHhhcCCEEEEE
Confidence 2 2367778889999999874
No 475
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.50 E-value=6.3 Score=34.17 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCeEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC----------CCCCc
Q 023971 117 SSKVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf----------~~~sF 178 (274)
+.+|| .|+ ||.++. .|++++ .+|++++-+++=++...... .++.++++|+.+... ..+.+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 45788 655 343444 444445 48999999987665554433 246788888765331 11368
Q ss_pred cEEEecccC
Q 023971 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 83 d~vi~~ag~ 91 (251)
T PRK07231 83 DILVNNAGT 91 (251)
T ss_pred CEEEECCCC
Confidence 999987654
No 476
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.42 E-value=6.6 Score=41.36 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred CeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------------------CceEEEeeccCCC
Q 023971 118 SKVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------------------TVKCWQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------------------~v~~~~gDae~LP 172 (274)
.+|- ||+|| |. ++..++..+ ..|+-+|.+++.|+.++++.. .+++ ..|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH--
Confidence 4788 99998 43 333444445 599999999999988765421 0111 122222
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC-ChhHHHHH----------HhhCc-------ccccc
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ-GREALQKQ----------RKQFP-------DVIVS 234 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~-gr~~l~~~----------~~~~~-------~~si~ 234 (274)
-...|+|+=+ .+-..+-..++|+++-++++|+-.|.-.+.. ....+.+. |...+ +++..
T Consensus 390 --~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 390 --FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred --hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCC
Confidence 2567888744 5555555669999999999998766553221 11112211 11111 11111
Q ss_pred cCCC---HHHHHHHHHhCCCcEeEEEecCCeE
Q 023971 235 DLPD---QMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 235 ~fps---~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.--+ .+.+.+++++.|...+...|.++|.
T Consensus 467 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv 498 (715)
T PRK11730 467 EKTSDETIATVVAYASKMGKTPIVVNDCPGFF 498 (715)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCcCchh
Confidence 1122 3455668889999888887777663
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.38 E-value=2.8 Score=37.74 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=53.2
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCCC
Q 023971 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~~ 191 (274)
+++ +|||. | .++..|.+.+ ..|++||..++-+++..........++||+.+.- ..-..+|++++.-+- .
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~---d 77 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN---D 77 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC---C
Confidence 577 99997 3 4455555555 4999999999988875554445777889987632 234689999875322 2
Q ss_pred CHHHHHHHHHHh
Q 023971 192 PLDQVFETLANR 203 (274)
Q Consensus 192 d~~~al~el~Rv 203 (274)
...-++..++..
T Consensus 78 ~~N~i~~~la~~ 89 (225)
T COG0569 78 EVNSVLALLALK 89 (225)
T ss_pred HHHHHHHHHHHH
Confidence 334455555544
No 478
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.31 E-value=5.3 Score=34.77 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=44.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC-----CC-----CC
Q 023971 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP-----DK-----WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP-----f~-----~~ 176 (274)
...++| .| |||.++..+ ++++ .+|++++-+++-++...++ ..++.++++|+.+.. +. -+
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 345777 66 455555544 4444 5899999987655444332 235778899987643 11 14
Q ss_pred CccEEEecccC
Q 023971 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 68999987664
No 479
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=86.21 E-value=6.5 Score=35.48 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=54.7
Q ss_pred CCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-c----cCCCCCCCCccEEEecccC
Q 023971 116 ESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-L----IYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-a----e~LPf~~~sFD~V~~~f~l 187 (274)
.+++|| .|+ +.|.++..+++....+|+.++.+++-++.+++ +..-.++... . ... ...+.+|+|+-..+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~~- 222 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKS-LGASEVLDREDLLDESKKP-LLKARWAGAIDTVG- 222 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCcEEEcchhHHHHHHHH-hcCCCccEEEECCc-
Confidence 346889 775 23555555655433579999999998888854 4321222111 0 001 11245898885432
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|+++|+++..
T Consensus 223 ------~~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 223 ------GDVLANLLKQTKYGGVVASC 242 (325)
T ss_pred ------hHHHHHHHHhhcCCCEEEEE
Confidence 13678888899999999873
No 480
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.16 E-value=2.7 Score=32.84 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred eEE-EEcCch-H-HHHHHHHhCC-CcEEE-EeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023971 119 KVL-VSISSE-E-FVDRVVESSP-SLLLV-VHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 119 rVL-vGcGTG-~-l~~~L~~~~~-~~V~g-VD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
||. ||+|.. . ....+.+..+ ..++| +|.+++..+.+.+++.- . .-.|.+++.. +...|+|+++--. . ..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-~-~~~~~~~ll~-~~~~D~V~I~tp~-~--~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-P-VYTDLEELLA-DEDVDAVIIATPP-S--SH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-E-EESSHHHHHH-HTTESEEEEESSG-G--GH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-c-chhHHHHHHH-hhcCCEEEEecCC-c--ch
Confidence 677 999774 2 2334444434 46654 59999999888777753 3 5566777653 3579999876322 1 12
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 194 DQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+.. .+.|+-|-.+++..|..
T Consensus 76 ~~~~---~~~l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 76 AEIA---KKALEAGKHVLVEKPLA 96 (120)
T ss_dssp HHHH---HHHHHTTSEEEEESSSS
T ss_pred HHHH---HHHHHcCCEEEEEcCCc
Confidence 2233 33466777888877754
No 481
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=86.10 E-value=13 Score=32.20 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=59.2
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEe---ec----cCCCCCCCC
Q 023971 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQG---EL----IYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~g---Da----e~LPf~~~s 177 (274)
....+.++++|| .|. +.|.++..+++....+|++++.+++.++.+++ .+- -..+.. +. .++ .....
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 175 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRE-LGIPDDHIFSSRDLSFADEILRA-TGGRG 175 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCChhheeeCCCccHHHHHHHH-hCCCC
Confidence 445778899999 773 34666666666533589999999999998853 331 111111 11 011 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+ ...+....+.|+++|+++..
T Consensus 176 ~d~vi~~~~-------~~~~~~~~~~l~~~g~~v~~ 204 (288)
T smart00829 176 VDVVLNSLA-------GEFLDASLRCLAPGGRFVEI 204 (288)
T ss_pred cEEEEeCCC-------HHHHHHHHHhccCCcEEEEE
Confidence 888885433 13566677889999999863
No 482
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.10 E-value=1.6 Score=37.89 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=54.9
Q ss_pred eEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------c----------e-EEEeeccCCCCC
Q 023971 119 KVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------V----------K-CWQGELIYVPDK 174 (274)
Q Consensus 119 rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------v----------~-~~~gDae~LPf~ 174 (274)
+|- ||+|+ |.- +..++..+ ..|+-+|.+++.++.++++... + . -...|.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH---
Confidence 466 88888 433 33444445 5999999999999888764211 0 1 123454443
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ..|+|+=+ .+-..+-.+++++++.+++.|+-.|.-.
T Consensus 77 ~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 77 V-DADLVIEA-IPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp C-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred h-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 2 67888844 4445445578999999999998887764
No 483
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=85.86 E-value=3.6 Score=38.07 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=59.8
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h-------CC-CceEEE---eeccCCCCCCCC-ccE
Q 023971 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K-------YD-TVKCWQ---GELIYVPDKWGP-LDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k-------~~-~v~~~~---gDae~LPf~~~s-FD~ 180 (274)
..-+|| +|.|||-.+...+......|+--|...-+...... + +. .+.... +++...-+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 345799 99999954444333233567777776665433222 1 22 233322 333222233344 999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+++-.+-....++.+..-++..|-.+|.+.+...
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99996665666677788888888999996655533
No 484
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.85 E-value=2.2 Score=41.66 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=66.8
Q ss_pred CCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCCC-CCCCCccEEEec-
Q 023971 117 SSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYVP-DKWGPLDVVFLY- 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~LP-f~~~sFD~V~~~- 184 (274)
+-+|| .=+|||.=+.+++.. .. .+|++.|+|++.++.++++. . .++..+.||..+- ...+.||+|=.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899 889999887777666 44 89999999999999998762 2 2567788987754 357899999654
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ .|...+....+.+|.||.|.|+-+
T Consensus 130 fG-----Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 FG-----SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp SS-------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-----CccHhHHHHHHHhhcCCEEEEecc
Confidence 44 355677788888999999999643
No 485
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=85.84 E-value=6.1 Score=34.81 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=44.3
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC----------CCCCCccE
Q 023971 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+.+|| .| |||.++..++ +++ .+|+.+|-+.+.++...++. .++.++++|+.+.. ...+..|+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45788 66 4444555444 444 58999999999887766554 35777888875421 11246899
Q ss_pred EEeccc
Q 023971 181 VFLYFL 186 (274)
Q Consensus 181 V~~~f~ 186 (274)
++.+.+
T Consensus 84 li~~ag 89 (257)
T PRK07067 84 LFNNAA 89 (257)
T ss_pred EEECCC
Confidence 987754
No 486
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.81 E-value=2.9 Score=38.30 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=51.5
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHH-HHHHHHHh----CCCceEEEeeccCCCC----------CC
Q 023971 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLF-VLAGIKEK----YDTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~-ML~~Ar~k----~~~v~~~~gDae~LPf----------~~ 175 (274)
.+.+|| .|++. .++.. |++.+ .+|+.++.+.. .++...+. ..++.++.+|+.+... .-
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788 66544 44444 44444 58888877642 22222221 2346778888755221 11
Q ss_pred CCccEEEecccCcC----CC--C--------------HHHHHHHHHHhcCCCCEEEEE
Q 023971 176 GPLDVVFLYFLPAM----PF--P--------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~----~~--d--------------~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+.+.+... .. + +-..++.+.+.++++|++++.
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 46899987755321 11 1 122334445556778888773
No 487
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.79 E-value=3.3 Score=38.16 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=54.3
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----------CC------------ceEEEeeccCCC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----------DT------------VKCWQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----------~~------------v~~~~gDae~LP 172 (274)
.+|. ||+|+ | .++..++..+ ..|+..|.+++-++.+.++. .. +++ ..|.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688 99987 2 4455565555 48999999999888765321 10 111 233322
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023971 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
-...|+|+.+ .+-...-.+.+++++...++|+..++
T Consensus 81 --~~~aD~Viea-vpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 --LADCDLVIEA-ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --hcCCCEEEEc-CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2457988875 33222224577889999999987655
No 488
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=85.76 E-value=0.73 Score=44.84 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=69.3
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH----------hCCC----ceEEEeeccCCCCC-
Q 023971 111 AGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE----------KYDT----VKCWQGELIYVPDK- 174 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~----------k~~~----v~~~~gDae~LPf~- 174 (274)
.+.+.+|+-|. ==.|||.+....++-| +.|+|-|+.-.|+...|. +|+. +..+.+|...-|..
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 35678999999 5566666665555545 699999999999985432 2331 46678998887753
Q ss_pred CCCccEEEec--ccCcCCCC---------------------------H----HHHHHHHHHhcCCCCEEEEE
Q 023971 175 WGPLDVVFLY--FLPAMPFP---------------------------L----DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~--f~l~~~~d---------------------------~----~~al~el~RvLKPGGrlvIs 213 (274)
...||+|+|- +++|--.. + ...+.=.+|+|+-|||+++-
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 5799999986 55542110 0 11233347899999999984
No 489
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.75 E-value=2.5 Score=31.86 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=48.8
Q ss_pred CchHHHHHHHH----hC--CCcEEEE-eCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023971 125 SSEEFVDRVVE----SS--PSLLLVV-HDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 125 GTG~l~~~L~~----~~--~~~V~gV-D~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
|+|.++..|++ .+ +.+|+.+ +.+++-++..+++++ +.+...+.+++- ..-|+|+.+.-++. ..+++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~---~~advvilav~p~~---~~~v~ 78 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-VQATADDNEEAA---QEADVVILAVKPQQ---LPEVL 78 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-TEEESEEHHHHH---HHTSEEEE-S-GGG---HHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-cccccCChHHhh---ccCCEEEEEECHHH---HHHHH
Confidence 55556555543 44 2588845 999999999998887 333332333321 25799998866644 47788
Q ss_pred HHHHHhcCCCCEE
Q 023971 198 ETLANRCSPGARV 210 (274)
Q Consensus 198 ~el~RvLKPGGrl 210 (274)
+++ ..+.+|..+
T Consensus 79 ~~i-~~~~~~~~v 90 (96)
T PF03807_consen 79 SEI-PHLLKGKLV 90 (96)
T ss_dssp HHH-HHHHTTSEE
T ss_pred HHH-hhccCCCEE
Confidence 888 666665544
No 490
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.72 E-value=4.1 Score=36.88 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEc-CchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023971 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSI-SSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGc-GTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
+..|+. -.+-||..+.+ ++...+.++ +.....++++|| +|. =||.+++.++... ++|+.+|+-+.|
T Consensus 12 vkT~~s-~~~v~Dvv~eI---~~~K~~ai~---~~~~~~E~~~vli~G~YltG~~~a~~Ls~~-~~vtv~Di~p~~---- 79 (254)
T COG4017 12 VKTIDS-KTRVVDVVNEI---AKKKYQAIR---DFLEGEEFKEVLIFGVYLTGNYTAQMLSKA-DKVTVVDIHPFM---- 79 (254)
T ss_pred HHHHhc-CCcHHHHHHHH---HHHHHHHhh---hhhcccCcceEEEEEeeehhHHHHHHhccc-ceEEEecCCHHH----
Confidence 334443 34558887775 322223333 334556778999 886 4788877776543 699999999988
Q ss_pred HHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023971 155 KEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 155 r~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
|.-.| +++|..+ +-+..+.+|+|+=.-++.-. +|+ .|+. +.| |.|++-+|.|
T Consensus 80 r~~lp~~v~Fr~~----~~~~~G~~DlivDlTGlGG~-~Pe-~L~~----fnp-~vfiVEdP~g 132 (254)
T COG4017 80 RGFLPNNVKFRNL----LKFIRGEVDLIVDLTGLGGI-EPE-FLAK----FNP-KVFIVEDPKG 132 (254)
T ss_pred HhcCCCCccHhhh----cCCCCCceeEEEeccccCCC-CHH-HHhc----cCC-ceEEEECCCC
Confidence 33333 5777665 44556889999977677665 443 3443 777 5677777765
No 491
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.66 E-value=4.5 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=21.2
Q ss_pred eEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCc
Q 023971 119 KVL-VSISS-EE-FVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 119 rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S 147 (274)
+|| +|||. |. ++..|++.+.++++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 578 99994 54 5556666665789999876
No 492
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.64 E-value=2.8 Score=38.61 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=53.9
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce----------E-EEeeccCCCCCCCCccEEEec
Q 023971 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK----------C-WQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~----------~-~~gDae~LPf~~~sFD~V~~~ 184 (274)
+|. ||+|. +.++..|++.+ ..|+.+|.+++.++..+++..... . ...|.++ .-...|+|+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE---ALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH---HHhCCCEEEEe
Confidence 577 98876 34455555555 489999999998887776531111 1 1112211 12457999876
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.-. ...+.+++++...++||..++.
T Consensus 79 v~~---~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 79 VPS---QALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred CCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence 433 2457888888888888765543
No 493
>PRK07024 short chain dehydrogenase; Provisional
Probab=85.63 E-value=3.6 Score=36.41 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=45.4
Q ss_pred CeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCC----------CCCCCccE
Q 023971 118 SKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 118 ~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.+|| .|+.+| .++..|++.+ .+|+.+|-..+.++...+..+ ++.++++|+.+.. ...+..|+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 4788 776543 2333444445 489999999988877666543 5778888886532 11245899
Q ss_pred EEecccC
Q 023971 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9988654
No 494
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.54 E-value=3.8 Score=38.07 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=56.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------c----------eE-EEeeccCCCC
Q 023971 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------V----------KC-WQGELIYVPD 173 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------v----------~~-~~gDae~LPf 173 (274)
.+|- ||+|+ | .++..++..+ ..|+..|.+++.++.++++..+ + +. ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh--
Confidence 3777 99997 3 4444555555 5999999999999987654211 0 01 12333222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhc-CCCCEEEE
Q 023971 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRC-SPGARVVI 212 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvL-KPGGrlvI 212 (274)
...|+|+-+ .+-...-.+++++++.+++ +||..++-
T Consensus 83 --~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 --ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred --CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888855 5555545568889999999 67655544
No 495
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.52 E-value=14 Score=33.46 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=55.4
Q ss_pred hCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEec
Q 023971 111 AGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLY 184 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~ 184 (274)
...+.++++|| .|+. .|..+..+++....+|++++. ++..+.+++ +. +..+.....+.. ..++.+|+|+-.
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~d~vl~~ 210 (331)
T cd08273 134 AAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRE-LG-ATPIDYRTKDWLPAMLTPGGVDVVFDG 210 (331)
T ss_pred hcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHH-cC-CeEEcCCCcchhhhhccCCCceEEEEC
Confidence 35778899999 8862 345555555543357888886 777777754 33 211111111111 122468888854
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023971 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+ ...+.+..+.|+++|+++.
T Consensus 211 ~~-------~~~~~~~~~~l~~~g~~v~ 231 (331)
T cd08273 211 VG-------GESYEESYAALAPGGTLVC 231 (331)
T ss_pred Cc-------hHHHHHHHHHhcCCCEEEE
Confidence 32 1236777889999999986
No 496
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=85.50 E-value=10 Score=36.26 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----CCC------------
Q 023971 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----YVP------------ 172 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----~LP------------ 172 (274)
..+.++++|| .|+ +.|.++..+++....++++++.+++-.+.+++ .....++.-+-+ .++
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRE-LGAEAVIDRNDFGHWGRLPDLNTQAPKEWTK 263 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCCEEecCCCcchhhccccccccccchhhh
Confidence 4677889999 887 23555555665433578889999988888876 432111111000 000
Q ss_pred ------------CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023971 173 ------------DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 173 ------------f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.....+|+|+-..+ ...+....+.|+++|+++..
T Consensus 264 ~~~~~~~~~~~~~~~~g~d~vld~~g-------~~~~~~~~~~l~~~G~~v~~ 309 (398)
T TIGR01751 264 SFKRFGKRIRELTGGEDPDIVFEHPG-------RATFPTSVFVCRRGGMVVIC 309 (398)
T ss_pred cchhHHHHHHHHcCCCCceEEEECCc-------HHHHHHHHHhhccCCEEEEE
Confidence 01245888876432 24577788899999999884
No 497
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.45 E-value=5 Score=35.44 Aligned_cols=94 Identities=9% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCc----HHHHHHHHH----hCCCceEEEeeccCCCC----------
Q 023971 117 SSKVL-VSISSEEFVDRV----VESSPSLLLVVHDS----LFVLAGIKE----KYDTVKCWQGELIYVPD---------- 173 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S----~~ML~~Ar~----k~~~v~~~~gDae~LPf---------- 173 (274)
+.+|| .|++.| ++..+ ++.+ .+|+.++.+ .+-++...+ .-.++.++++|+.+...
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQG-AKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCC-CcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 45788 776554 44444 4334 466666532 233332222 12357788888865321
Q ss_pred CCCCccEEEecccCcCC-----CCHH--------------HHHHHHHHhcCCCCEEEE
Q 023971 174 KWGPLDVVFLYFLPAMP-----FPLD--------------QVFETLANRCSPGARVVI 212 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~-----~d~~--------------~al~el~RvLKPGGrlvI 212 (274)
.-+..|+++.+.+.... .+.+ ..++.+.+.++++|++++
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 12468999988664221 1222 124566677777888765
No 498
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.44 E-value=2.4 Score=41.72 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=48.8
Q ss_pred CeEE-EEcCc-hHHHHHH-HHhCCCcEEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCC---CCCCccEEEec
Q 023971 118 SKVL-VSISS-EEFVDRV-VESSPSLLLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPD---KWGPLDVVFLY 184 (274)
Q Consensus 118 ~rVL-vGcGT-G~l~~~L-~~~~~~~V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf---~~~sFD~V~~~ 184 (274)
.+|| ||||. |..++.. ++++..+|+..|-|.+-+++++.. .+++++++-|+.+.+. .-..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4789 99977 5554443 444437999999999998888776 4678999999887652 12456999865
No 499
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.30 E-value=3.7 Score=41.37 Aligned_cols=95 Identities=13% Similarity=-0.059 Sum_probs=59.8
Q ss_pred CeEE-EEcCchHHHHHH--HHhCC-CcEEEEeCcHHHHHHHHHhCCC-----------ceEEEeeccCCCCCC-CCccEE
Q 023971 118 SKVL-VSISSEEFVDRV--VESSP-SLLLVVHDSLFVLAGIKEKYDT-----------VKCWQGELIYVPDKW-GPLDVV 181 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L--~~~~~-~~V~gVD~S~~ML~~Ar~k~~~-----------v~~~~gDae~LPf~~-~sFD~V 181 (274)
+.++ +|.|+|.-+-++ +-+.. ..++-||.|..|++.......+ +.|.. ..+|-.. +.||+|
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYDLV 278 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccceeeE
Confidence 3566 777666543333 23332 5789999999999988765332 11222 2256443 559999
Q ss_pred EecccCcCCC---CHHHHHHHHHH-hcCCCCEEEEEcC
Q 023971 182 FLYFLPAMPF---PLDQVFETLAN-RCSPGARVVISHP 215 (274)
Q Consensus 182 ~~~f~l~~~~---d~~~al~el~R-vLKPGGrlvIs~~ 215 (274)
++++.++... ....+.++++| ..++||.+||.+.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9998776644 33455566554 5788999999543
No 500
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.29 E-value=4 Score=35.57 Aligned_cols=70 Identities=7% Similarity=-0.004 Sum_probs=42.6
Q ss_pred CCCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHH----hCCCceEEEeeccCCCC----------CCC
Q 023971 116 ESSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKE----KYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~----k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .| |||.++..++ +++ .+|+++|-++.-++...+ +..++.++.+|+.+... ..+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788 77 4454555444 444 589999988754433322 22356678888766431 113
Q ss_pred CccEEEecccC
Q 023971 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
.+|+|+.+.+.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999988654
Done!