BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023972
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NB0|A Chain A, Crystal Structure Of Human Riboflavin Kinase
pdb|1NB9|A Chain A, Crystal Structure Of Riboflavin Kinase
pdb|1P4M|A Chain A, Crystal Structure Of Riboflavin Kinase
Length = 147
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 103/143 (72%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 186
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 63
Query: 187 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 246
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 64 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 123
Query: 247 VAERALDLPLYSKYRDDPYLKIT 269
A++ L+LP Y K ++D + +++
Sbjct: 124 EAKKRLELPEYLKIKEDNFFQVS 146
>pdb|1Q9S|A Chain A, Crystal Structure Of Riboflavin Kinase With Ternary
Product Complex
Length = 149
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 103/143 (72%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 186
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 6 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 65
Query: 187 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 246
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 66 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 125
Query: 247 VAERALDLPLYSKYRDDPYLKIT 269
A++ L+LP Y K ++D + +++
Sbjct: 126 EAKKRLELPEYLKIKEDNFFQVS 148
>pdb|1N05|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
Length = 163
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 186
P G VV G GRGSK LGIPTAN+S + ++L SGVYFG+A + R V+ MVMS
Sbjct: 23 PIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-VFPMVMS 81
Query: 187 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 246
+GWNPY+ N ++ E L+ EDFY+E + ++++GYIRPE N+ L+ LI IH D +
Sbjct: 82 VGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDIR 141
Query: 247 VAERALDLPLYSKYRDDPYLKI 268
VA ++D P YS Y+ DP+ K+
Sbjct: 142 VALNSMDRPSYSSYKKDPFFKV 163
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 126 EPWYIGGPVVKGLGRGSKVLGIPTANLSTE-GYSDVLSEHPSGVYFGWAGLS-------- 176
+P+++ G VV G GRG LG PTAN+ + + L + + V +GW +S
Sbjct: 16 QPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERE 75
Query: 177 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 236
+ G Y SIG+N FD T+EP+ LHEF DFY + ++++G IR +F SL+
Sbjct: 76 SFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSLQA 135
Query: 237 LIAKIHEDRKVAERALDLPLYSKY 260
L+ I D + L P ++
Sbjct: 136 LVDTIKSDVQFTRDMLQKPQLQEF 159
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 2 ALASNSHRATIESKISYQHGWNESFS-VIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS-- 57
ALA++S A+ + K S + FS +++G D EV+ GKP PDIFL AKR + P+
Sbjct: 132 ALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAME 191
Query: 58 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 116
LV ED+ GV A AAGM+VV VP T A V+NSL D +PE +GLP ++
Sbjct: 192 KCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 250
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 128 WYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGW-----------AGLS 176
+Y+ GPVV+G GRG K LG PTAN + + D ++ GVY GW +
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTAN---QYFHDTVALPADGVYAGWLTILPTEAPVSGNME 243
Query: 177 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 236
Y +S+G NP F + ++++E ++L D D Y ++ + V ++R F S+E
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVESFVLDR-DADLYGHDVKVEFVDHVRAMEKFDSVEQ 302
Query: 237 LIAKIHED 244
L+ + +D
Sbjct: 303 LLEVMAKD 310
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 128 WYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGW-----------AGLS 176
+Y+ GPVV+G GRG K LG PTAN + + D ++ GVY GW +
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTAN---QYFHDTVALPADGVYAGWLTILPTEAPVSGNME 243
Query: 177 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 236
Y +S+G NP F + +++++ ++L D D Y ++ + V ++R F S+E
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVDSFVLDR-DADLYGHDVKVEFVDHVRAMEKFDSVEQ 302
Query: 237 LIAKIHED 244
L+ + +D
Sbjct: 303 LLEVMAKD 310
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS+S +A I + ++ F +++ +E + KP+P+I+L A K+LN++ S +L
Sbjct: 108 IGLASSSVKADIFRALE-ENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRAL 166
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+IEDS G+ AG AA +EV A+ + +AA +++SL D+
Sbjct: 167 IIEDSEKGIAAGVAADVEVWAIRDNEFGXDQ-SAAKGLLDSLTDV 210
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 120 EGTLPSEPWYIG------GPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWA 173
EG + P Y+G G V K G K LG PTAN+ ++ L + GVY
Sbjct: 146 EGRVEEIPAYLGRYFEIEGIVHKDREFGRK-LGFPTANIDRG--NEKLVDLKRGVYLVRV 202
Query: 174 GLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPS 233
L VM++G+ P +A + +F+ D Y + L L ++ ++R E F S
Sbjct: 203 HLPDGKKKFGVMNVGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDS 262
Query: 234 LETLIAKIHEDRKVAERALDLPLYSKY 260
+E L A I +D K A +D + SK+
Sbjct: 263 IEELKAAIDQDVKSARNMIDDIINSKF 289
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 16 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 75
I+ G + +VI G D V GKP PD+ L A+ L + P +VI D V G+AA
Sbjct: 137 IAELTGLDTRLTVIAGDDSVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAA 196
Query: 76 GMEVVAVP---SLPKQTHRYTAADEVINSL 102
GM V+ V S P + R AD V++S
Sbjct: 197 GMTVIGVSYGVSGPDELMR-AGADTVVDSF 225
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 1 MALASNS-HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ALA+++ R +E + + F V V D+V+ GKP P+I+L +RLN+ P
Sbjct: 103 LALATSTPQREALER--LRRLDLEKYFDVXVFGDQVKNGKPDPEIYLLVLERLNVVPEKV 160
Query: 60 LVIEDSVIGVVAGKAAGMEVV 80
+V EDS GV A K+AG+E +
Sbjct: 161 VVFEDSKSGVEAAKSAGIERI 181
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS S +E K+ +SF + ++++ KP P ++L+ A +L ++P + +
Sbjct: 113 VGLASASPLHXLE-KVLTXFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV 171
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDL 105
+EDSV G +A KAA + VP+ Q R+ A+ ++SL +L
Sbjct: 172 ALEDSVNGXIASKAARXRSIVVPAPEAQNDPRFVLANVKLSSLTEL 217
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 120 EGTLPSEPWYIG------GPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWA 173
EG + P Y+G G V K G K LG PTAN+ ++ L + GVY
Sbjct: 146 EGRVEEIPAYLGRYFEIEGIVHKDREFGRK-LGFPTANIDRG--NEKLVDLKRGVYLVRV 202
Query: 174 GLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPS 233
L V ++G+ P +A + +F+ D Y + L L ++ + R E F S
Sbjct: 203 HLPDGKKKFGVXNVGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFXRDEKKFDS 262
Query: 234 LETLIAKIHEDRKVAERALDLPLYSKY 260
+E L A I +D K A +D + SK+
Sbjct: 263 IEELKAAIDQDVKSARNXIDDIINSKF 289
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS+S A KI + + F IV + GKP PDIFL AA L++ P+
Sbjct: 111 IGLASSSRNA---PKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCA 167
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 108
IED+ G+ A K+AG V V Q AD V+ DL E
Sbjct: 168 AIEDAEAGISAIKSAGXFAVGV----GQGQPXLGADLVVRQTSDLTLE 211
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 27 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++ V + +V+ GKP+P+ +L A K+ +P+ +LVIE++ +GV AG AAG+ +AV + P
Sbjct: 153 NLXVTAFDVKYGKPNPEPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGP 212
Query: 87 KQTHRYTAADEVINSLLDLRPE 108
H +E N L P+
Sbjct: 213 --LHDNVLLNEGANLLFHSXPD 232
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 30 VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV----AVPSL 85
+G+D V KP PDIFL A + + P +V+EDSV G+ +AAG V+ A +
Sbjct: 137 LGADRV---KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHTY 193
Query: 86 PKQTHRYT--AADEVINSLLDL 105
P R T A+ VI+ DL
Sbjct: 194 PSHADRLTDAGAETVISRXQDL 215
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 21 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 80
G ++ F I + + + KP P+IFL +AK LN+ P + + IED+ G+ A +A M V
Sbjct: 152 GISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSV 211
Query: 81 AV 82
V
Sbjct: 212 GV 213
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 24 ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 82
E F+ + +++ KP P+IFL A L + P + + IED+ G+ A A+GM V +
Sbjct: 134 EFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGI 192
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + S +R I S + H ++ F +I+G ++V KP P+ L A RL P L
Sbjct: 108 IGIISTKYRFRILSFLR-NHXPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVL 166
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINS---LLDLRPEKWGLP 113
I DS + AAG+ V S + A D +I++ L+ + +K G P
Sbjct: 167 YIGDSTVDAGTAAAAGVSFTGVTSGXTTAQEFQAYPYDRIISTLGQLISVPEDKSGCP 224
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 28 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 86
++V + +V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 155 LMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 76
F I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 132 FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 76
F I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 132 FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 76
F I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 132 FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
MA+ SN + + S+I +++ F I+GS + T KPSP+ L A +N+EPS +
Sbjct: 122 MAIVSNKNGERLRSEIHHKN-LTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEV 180
Query: 61 -VIEDSVIGVVAGKAAGM 77
I DS+ + + AG
Sbjct: 181 FFIGDSISDIQSAIEAGC 198
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 29 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 73
IV D+V GKP PD+FL AAK++ LVI D++ +A +
Sbjct: 137 IVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDXLAAR 181
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 78
F +IVG D KPSP L+ + L EP +L++ D+ + AGK AG +
Sbjct: 126 FDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTK 178
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 78
F +IVG D KPSP L+ + L EP +L++ D+ + AGK AG +
Sbjct: 124 FDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTK 176
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 1 MALASNSHRATIESKISY--------QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 52
A+ SNS R + K+ +H ++ S+ VG GKP PD++ AA++L
Sbjct: 129 FAIGSNSERGRLHLKLRVAGLTELAGEHIYDPSW---VGG----RGKPHPDLYTFAAQQL 181
Query: 53 NMEPSSSLVIEDSV 66
+ P +VIEDSV
Sbjct: 182 GILPERCVVIEDSV 195
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
KP+P +EA KRL ++ SL++ D + AGK AG+
Sbjct: 137 KPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGL 175
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 37 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEVVAVPSLPKQTHRYTAA 95
GKPSP+ F A + + +E +++I D ++G V G + GM + V +T ++ +
Sbjct: 188 VGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQV-----RTGKFRPS 242
Query: 96 DE 97
DE
Sbjct: 243 DE 244
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 21 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEV 79
G + F+ + ++++ GKP P FLEA +R ++ S+++ + D +AG + AGM
Sbjct: 137 GLADYFAFALCAEDLGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRA 196
Query: 80 V 80
+
Sbjct: 197 I 197
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ L +N R T KI + +V+VG ++ R KP+P IF L ++P +
Sbjct: 149 LLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQ-REEKPAPSIFYYCCNLLGVQPGDCV 207
Query: 61 VIEDSV-IGVVAGKAAGME 78
++ D++ + G AG++
Sbjct: 208 MVGDTLETDIQGGLNAGLK 226
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 2 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 61
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 62 IEDSVIGVVAGKAAGMEVVAVP-----SLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 116
+ + V K G V V +L ++ T A + L +R E + P
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP-- 227
Query: 117 DWIEGTLPSEPWYIGG 132
D++ L P + G
Sbjct: 228 DFVVPALGDLPRLVRG 243
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ L +N R T KI F IV E + KP+P IF L ++P +
Sbjct: 139 LLLLTNGDRQTQREKIE-ACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV 197
Query: 61 VIEDSV-IGVVAGKAAGME 78
++ D++ + G AG++
Sbjct: 198 MVGDTLETDIQGGLNAGLK 216
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 2 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 61
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 62 IEDSVIGVVAGKAAGMEVVAVP-----SLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 116
+ + V K G V V +L ++ T A + L +R E + P
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP-- 227
Query: 117 DWIEGTLPSEPWYIGG 132
D++ L P + G
Sbjct: 228 DFVVPALGDLPRLVRG 243
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 2 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 61
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 62 IEDSVIGVVAGKAAGMEVVAVP-----SLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 116
+ + V K G V V +L ++ T A + L +R E + P
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP-- 227
Query: 117 DWIEGTLPSEPWYIGG 132
D++ L P + G
Sbjct: 228 DFVVPALGDLPRLVRG 243
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + ++ R +ES + + +V + +D+ KP P L A +++N+ P ++L
Sbjct: 101 LGIVTSQRRNELESGXR-SYPFXXRXAVTISADDTPKRKPDPLPLLTALEKVNVAPQNAL 159
Query: 61 VIEDSVIGVVAGKAAGME 78
I DSV +AA ++
Sbjct: 160 FIGDSVSDEQTAQAANVD 177
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 96
KP P + L A L+++ ++S ++ D + + A AA G +V+ P AAD
Sbjct: 131 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 190
Query: 97 EVINSLLDL 105
V+NSL DL
Sbjct: 191 WVLNSLADL 199
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 96
KP P + L A L+++ ++S ++ D + + A AA G +V+ P AAD
Sbjct: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 170
Query: 97 EVINSLLDL 105
V+NSL DL
Sbjct: 171 WVLNSLADL 179
>pdb|3L8F|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With Magnesium And
Phosphate
pdb|3L8G|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With
D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
Length = 187
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 96
KP P L A L+++ ++S + D + A AA G +V+ P AAD
Sbjct: 111 KPHPGXLLSARDYLHIDXAASYXVGDKLEDXQAAVAANVGTKVLVRTGKPITPEAENAAD 170
Query: 97 EVINSLLDL 105
V+NSL DL
Sbjct: 171 WVLNSLADL 179
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 32 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
S E++ KP P+IF + ++P + I+DS I + G+
Sbjct: 166 SYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI 211
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 32 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
S E++ KP P+IF + ++P + I+DS I + G+
Sbjct: 166 SYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI 211
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEVVAVPSLPKQTHRYTAAD 96
GKP FLEA + EP +++I D V G + GM + V +T +Y A+D
Sbjct: 178 GKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILV-----KTGKYRASD 232
Query: 97 EVINSLLDLRPEKWGLPPF 115
E EK PP+
Sbjct: 233 E----------EKINPPPY 241
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 85
F+ +V S KP+P+ L ++ + SS LVI D I + AG+AAG++ S+
Sbjct: 124 FTEVVTSSSGFKRKPNPESMLYLREKYQI--SSGLVIGDRPIDIEAGQAAGLDTHLFTSI 181
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
+ VI+GSD R KP P +L A+ L + P ++ + A A G+
Sbjct: 156 WDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGL 207
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 21 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 80
G + FS +G + KP P F + + P L + DS + A +AG VV
Sbjct: 152 GIDHLFSEXLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVV 211
Query: 81 AV 82
+
Sbjct: 212 GL 213
>pdb|3CF4|G Chain G, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 170
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 121 GTLPSEPWYIGGPVVKGLGRGSKVLGIPTA----NLSTEGYSDV----LSEHPSGVYFG- 171
GTL +P + V + SK IP A +L+ DV ++ H G Y
Sbjct: 42 GTLALDPELLDRVV-----KISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTD 96
Query: 172 --WAGLSTRGVYKMVMSIGWNPYFDN 195
W GL G Y M+++IG+ ++ N
Sbjct: 97 PKWPGLDGNGNYDMIITIGFKKFYIN 122
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 2 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 61
A+ SN R +I + G SF ++ DEVR KP ++ A L++ S L
Sbjct: 116 AILSNGSRHSIRQVVG-NSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEILF 174
Query: 62 I 62
+
Sbjct: 175 V 175
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 198 KTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDR 245
K + + FD D DE+ GY+ E N+ S+E + ++ ++R
Sbjct: 124 KKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSIENFVERVEKER 171
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 29 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 84
I G GKPSP I A ++ ++++ D++ ++AG AG+E + V S
Sbjct: 166 ISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS 222
>pdb|2PR1|A Chain A, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
pdb|2PR1|B Chain B, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
Length = 163
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 GVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLH 206
G+YFG ++ +Y++ + NPYFDN + +E W L
Sbjct: 52 GIYFGDKLVARMSLYQV--NGKSNPYFDNRQDYLELWKLE 89
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + SN R ++S+ G + F I+ S+++ KP P+IF A E SL
Sbjct: 125 LYILSNGFRE-LQSRKXRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESL 183
Query: 61 VIEDSVIGVVAG 72
I DS + G
Sbjct: 184 XIGDSWEADITG 195
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 29 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 82
++G DE KP P L+ A+ ++ PS + + D + G+AAG V V
Sbjct: 118 VLGRDEA-PPKPHPGGLLKLAEAWDVSPSRXVXVGDYRFDLDCGRAAGTRTVLV 170
>pdb|2I6X|A Chain A, The Structure Of A Predicted Had-like Family Hydrolase
From Porphyromonas Gingivalis
Length = 211
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 81
F + S + KP+ DIFLE +P +L I+D V + G
Sbjct: 137 FDKVYASCQXGKYKPNEDIFLEXIADSGXKPEETLFIDDGPANVATAERLGFHTYC 192
>pdb|1LLN|A Chain A, 1.6a Crystal Structure Of Pokeweed Antiviral Protein-Iii
(Pap-Iii) With Methylated Lysines
Length = 262
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 122 TLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDV 160
TL +P Y+ V G G+ L I NL EGYSD+
Sbjct: 40 TLTEQPXYV--LVDLXFGSGTFTLAIRRGNLYLEGYSDI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,842,939
Number of Sequences: 62578
Number of extensions: 400504
Number of successful extensions: 1076
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 81
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)