RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023972
(274 letters)
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 202 bits (517), Expect = 1e-66
Identities = 67/142 (47%), Positives = 102/142 (71%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 186
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 63
Query: 187 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 246
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 64 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 123
Query: 247 VAERALDLPLYSKYRDDPYLKI 268
A++ L+LP Y K ++D + ++
Sbjct: 124 EAKKRLELPEYLKIKEDNFFQV 145
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
cofactors, metal binding; HET: ADP; 1.60A
{Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
1n07_A* 1n06_A*
Length = 163
Score = 203 bits (519), Expect = 2e-66
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 101 SLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDV 160
+L + RPE G E P G VV G GRGSK LGIPTAN+S + ++
Sbjct: 4 NLEEKRPEIVG-------PEKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQEL 56
Query: 161 LSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLV 220
L SGVYFG+A + R V+ MVMS+GWNPY+ N ++ E L+ EDFY+E + ++
Sbjct: 57 LRYRDSGVYFGYAMVQKR-VFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVI 115
Query: 221 IVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKI 268
++GYIRPE N+ L+ LI IH D +VA ++D P YS Y+ DP+ K+
Sbjct: 116 VLGYIRPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKDPFFKV 163
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
structural genomics of P protozoa consortium, SGPP,
transferase; 2.40A {Trypanosoma brucei}
Length = 181
Score = 192 bits (491), Expect = 4e-62
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 115 FQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGY-SDVLSEHPSGVYFGWA 173
+ T +P+++ G VV G GRG LG PTAN+ + + L + + V +GW
Sbjct: 5 HHHHMRQTGSFQPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWG 64
Query: 174 GLSTR--------GVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYI 225
+S G Y SIG+N FD T+EP+ LHEF DFY + ++++G I
Sbjct: 65 TVSQVPGKERESFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEI 124
Query: 226 RPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKITSSK 272
R +F SL+ L+ I D + L P ++ + SS
Sbjct: 125 RSMGSFHSLQALVDTIKSDVQFTRDMLQKPQLQEFSRHSLFESPSST 171
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 159 bits (404), Expect = 4e-48
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLNMEPSS 58
ALA++S A+ + K S + FS IV D EV+ GKP PDIFL AKR + P+
Sbjct: 131 FALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAM 190
Query: 59 S--LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 116
LV ED+ GV A AAGM+VV VP T A V+NSL D +PE +GLP ++
Sbjct: 191 EKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 250
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 134 bits (340), Expect = 6e-39
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS+S +A I + ++ F +++ +E + KP+P+I+L A K+LN++ S +L
Sbjct: 108 IGLASSSVKADIFRALE-ENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRAL 166
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+IEDS G+ AG AA +EV A+ + +AA +++SL D+
Sbjct: 167 IIEDSEKGIAAGVAADVEVWAIRD-NEFGMDQSAAKGLLDSLTDV 210
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 132 bits (333), Expect = 1e-37
Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + S + ++ ++++ +++V + +V+ GKP+P+ +L A K+ +P+ +L
Sbjct: 127 PMVVTGSGQTSLLDRLNHNFPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNEAL 186
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDW 118
VIE++ +GV AG AAG+ +AV + L A+ + +S+ D + W +
Sbjct: 187 VIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDF-NKNW------ET 239
Query: 119 IEGTLPSE 126
++ L +
Sbjct: 240 LQSALKQD 247
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 131 bits (331), Expect = 2e-37
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS S +E ++ +SF + ++++ KP P ++L+ A +L ++P + +
Sbjct: 113 VGLASASPLHMLEKVLT-MFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV 171
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLRPEK 109
+EDSV G++A KAA M + VP+ Q R+ A+ ++SL +L +
Sbjct: 172 ALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKD 221
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 129 bits (327), Expect = 1e-36
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + S + ++ ++ + ++V + +V+ GKP+P+ +L A K+ ++ ++
Sbjct: 128 PMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAV 187
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 105
VIE++ +GV AG AG+ +AV + L Q AD + S+ L
Sbjct: 188 VIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 120 bits (304), Expect = 1e-33
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ALAS S + + F I EV KP+PDIF+ AA + + PS S+
Sbjct: 110 IALASASKNGPFLLE---RMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESI 166
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 109
+EDS G+ A K +G + V ++ E
Sbjct: 167 GLEDSQAGIQAIKDSGALPIGVGR----PEDLGDDIVIVPDTSHYTLEF 211
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 120 bits (302), Expect = 3e-33
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS+S A KI + + F IV + GKP PDIFL AA L++ P+
Sbjct: 111 IGLASSSRNAP---KILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCA 167
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 109
IED+ G+ A K+AGM V V AD V+ DL E
Sbjct: 168 AIEDAEAGISAIKSAGMFAVGVGQ----GQPMLGADLVVRQTSDLTLEL 212
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 118 bits (299), Expect = 6e-33
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ALA+++ + ++ + + F V+V D+V+ GKP P+I+L +RLN+ P +
Sbjct: 103 LALATSTPQREALERLR-RLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVV 161
Query: 61 VIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDL 105
V EDS GV A K+AG+E + SL A + ++
Sbjct: 162 VFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEI 208
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 117 bits (295), Expect = 4e-32
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+A++ T + + + IV D+V GKP PD+FL AAK++ L
Sbjct: 110 WCIATSGGIDTATINLK-ALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECL 168
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 107
VI D++ ++A + V + S A V LDL
Sbjct: 169 VIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRVYEDPLDLLN 217
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 116 bits (293), Expect = 1e-31
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 1 MALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 58
A+ SNS R + K+ G E + S GKP PD++ AA++L + P
Sbjct: 129 FAIGSNSERGRLHLKLR-VAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPER 187
Query: 59 SLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQTH----RYTAADEVINSLLDLRP--EKW 110
+VIEDSV G AG AAG + + P P A V+ S +LR +
Sbjct: 188 CVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAELRAALAEA 247
Query: 111 GLP 113
GL
Sbjct: 248 GLL 250
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 114 bits (288), Expect = 5e-31
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ LAS S A E F+ + +++ KP P+IFL A L + P + +
Sbjct: 114 VGLASVSLNAPTILA---ALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACI 170
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 109
IED+ G+ A A+GM V + + T A ++ S L +
Sbjct: 171 GIEDAQAGIDAINASGMRSVGIGA------GLTGAQLLLPSTESLTWPR 213
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 112 bits (282), Expect = 3e-30
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDE---VRTGKPSPDIFLEAAKRLNMEPS 57
+ SNS ++ ++ + G F+ + S + KP PDIFL A + + P
Sbjct: 103 RCICSNSSSHRLDMMLT-KVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD 161
Query: 58 SSLVIEDSVIGVVAGKAAGMEVVAVPSLP------KQTHRYTAADEVINSLLDLRPEKWG 111
+V+EDSV G+ +AAGM V+ A+ VI+ + DL P
Sbjct: 162 RVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDL-PAVIA 220
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 112 bits (282), Expect = 3e-29
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRG------- 179
+Y+ GPVV+G GRG K LG PTAN + GVY GW +
Sbjct: 186 HFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALP---ADGVYAGWLTILPTEAPVSGNM 242
Query: 180 ----VYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLE 235
Y +S+G NP F + ++++E ++L + D D Y ++ + V ++R F S+E
Sbjct: 243 EPEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSVE 301
Query: 236 TLIAKIHEDRKVAERAL 252
L+ + +D + L
Sbjct: 302 QLLEVMAKDVQKTRTLL 318
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 110 bits (277), Expect = 9e-29
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP-SGVYFGWAGLSTRGVYKMVM 185
P G VV G RG +G PTANL + + P GVY + + Y+ +
Sbjct: 189 PLPSRGMVVHGNARGRT-IGYPTANLVLLDRTYM----PADGVYVVDVEIQRQ-KYRAMA 242
Query: 186 SIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDR 245
S+G N FD E E + +F++D Y E + + + IR F S++ L+ ++ D
Sbjct: 243 SVGKNVTFDGEEARFEVNIF-DFNQDIYGETVMVYWLDRIRDMTKFDSVDQLVDQLKADE 301
Query: 246 KVAER 250
+V
Sbjct: 302 EVTRN 306
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 108 bits (272), Expect = 2e-28
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN------- 53
A+A++ R + + + +++V+ GKP P+ +L+ L
Sbjct: 134 WAVATSGTRDMAKKWF--DILKIKRPEYFITANDVKQGKPHPEPYLKGRNGLGFPINEQD 191
Query: 54 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS-LPKQTHRYTAADEVINSLLDLRPEKW 110
S +V ED+ G+ AGKAAG ++V + + + D ++ + +R ++
Sbjct: 192 PSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRVGEY 249
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
binding domain, 6-stranded beta barrel nucleotide
binding domain; HET: CIT; 1.90A {Thermotoga maritima}
SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
1t6z_A* 2i1l_A
Length = 293
Score = 108 bits (273), Expect = 3e-28
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP-SGVYFGWAGLSTRGVYKMVM 185
+ I G V K G K LG PTAN+ V GVY L VM
Sbjct: 159 YFEIEGIVHKDREFGRK-LGFPTANIDRGNEKLVD---LKRGVYLVRVHLPDGKKKFGVM 214
Query: 186 SIGWNPYFDNAEK-TIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHED 244
++G+ P +A E ++L +F+ D Y + L L ++ ++R E F S+E L A I +D
Sbjct: 215 NVGFRPTVGDARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQD 273
Query: 245 RKVAERALDLPLYSKYRDD 263
K A +D + SK+ +
Sbjct: 274 VKSARNMIDDIINSKFEKE 292
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 86.5 bits (214), Expect = 3e-20
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS- 59
+ + + + + + V + +V G+P PD+ L+ A L + +
Sbjct: 130 VGGNTGYGPGMMAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGHVNGC 189
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVPS 84
+ ++D++ G+ G AGM V V
Sbjct: 190 IKVDDTLPGIEEGLRAGMWTVGVSC 214
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 82.9 bits (205), Expect = 4e-20
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ SN + I + N ++ S E+ KP F AA +++ +
Sbjct: 37 TVILSNDPGGLGAAPIR-ELETNGVVDKVLLSGELGVEKPEEAAFQAAADAIDLPMRDCV 95
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 108
+++DS++ V AG+ V + A I L L E
Sbjct: 96 LVDDSILNVRGAVEAGLVGVYYQQFDR-------AVVEIVGLFGLEGE 136
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 80.8 bits (200), Expect = 2e-18
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS- 59
MA+ SN + + + F I+GS + T KPSP+ L A +N+EPS
Sbjct: 122 MAIVSNKNGERLR-SEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEV 180
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDL 105
I DS+ + + AG + ++ K + ++ N + L
Sbjct: 181 FFIGDSISDIQSAIEAGCLPIKYGSTNIIKDILSFKNFYDIRNFICQL 228
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 78.7 bits (195), Expect = 6e-18
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
L S+ + +E I + F+ +V S KP+P+ L ++ + L
Sbjct: 101 HFLVSHRNDQVLE--ILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISS--GL 156
Query: 61 VIEDSVIGVVAGKAAGMEVVAVP 83
VI D I + AG+AAG++
Sbjct: 157 VIGDRPIDIEAGQAAGLDTHLFT 179
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 78.7 bits (195), Expect = 8e-18
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ + ++ + + +V + +D+ KP P L A +++N+ P ++
Sbjct: 101 LGIVTSQRRNELE--SGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNA 158
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 107
L I DSV +AA ++ P H+ LD+
Sbjct: 159 LFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQ--KVAHRFQKPLDILE 206
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 77.2 bits (191), Expect = 4e-17
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ + S + H ++ F +I+G ++V KP P+ L A RL P
Sbjct: 108 IGIISTKYRFRIL--SFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEV 165
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP---EKWGLP 113
L I DS + AAG+ V S Q + D +I++L L +K G P
Sbjct: 166 LYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCP 224
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 74.2 bits (183), Expect = 4e-16
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ ++ + A I G F+ I+ S KPSP+ + + ++
Sbjct: 104 QFIYTHKGNNAF---TILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNT 160
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 107
I D + V + +G++ + + I +L D+
Sbjct: 161 YYIGDRTLDVEFAQNSGIQSINF------LESTYEGNHRIQALADISR 202
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 74.9 bits (184), Expect = 4e-16
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 1 MALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ + R ++ + +V D+V G+P P + + A L + P +
Sbjct: 122 IGSTTGYTREMMDIVAK-EAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH 180
Query: 60 -LVIEDSVIGVVAGKAAGMEVVAVPS-------LPKQTHRYTA----------------- 94
+ + D+V + G+ AGM V V ++ +
Sbjct: 181 MIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVEN 240
Query: 95 -ADEVINSLLDLRP 107
A I ++ +L
Sbjct: 241 GAHFTIETMQELES 254
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 74.3 bits (183), Expect = 4e-16
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL---NMEPS 57
+ L + + A+ K+ G + F +D+ P I LE A+R+ N PS
Sbjct: 113 LGLLTGNFEASGRHKLK-LPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSPS 171
Query: 58 SSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 107
++I D+ + + +AV + + + + +
Sbjct: 172 QIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDE 223
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 72.8 bits (179), Expect = 9e-16
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
M +N R E +I G E S + KP+P ++ + P ++
Sbjct: 104 MYSLNNEGRDLNEYRIR-TFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAV 162
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+++D + V A +A GM + A ++ L L
Sbjct: 163 MVDDRLQNVQAARAVGM----------HAVQCVDAAQLREELAAL 197
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 69.4 bits (170), Expect = 2e-14
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 1 MALASNSHRATIESKISYQH-----GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 55
+ L SN++ ++ +S + + F + S ++ KP+ DIFLE M+
Sbjct: 107 LFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMK 166
Query: 56 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 109
P +L I+D V + G T+ + I ++ L E+
Sbjct: 167 PEETLFIDDGPANVATAERLGF----------HTYCPDNGENWIPAITRLLREQ 210
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 69.1 bits (170), Expect = 3e-14
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+A+ SN + KI + F +IVG D KPSP L+ + L EP +
Sbjct: 102 LAVVSNKLEELSK--KILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKA 159
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 107
L++ D+ + AGK AG + + + D ++ DL
Sbjct: 160 LIVGDTDADIEAGKRAGTKTALALWGYVKLNSQI---PDFTLSRPSDLVK 206
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 68.8 bits (169), Expect = 3e-14
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ + + + R + G + F+ V + KP P L+ A+ ++ PS
Sbjct: 89 LGILTRNARELAHVTLE-AIGLADCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRM 147
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 107
+++ D + G+AAG V V D LR
Sbjct: 148 VMVGDYRFDLDCGRAAGTRTVLVN--LPDNPWPELTDWHARDCAQLRD 193
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 69.2 bits (170), Expect = 3e-14
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+A+ +N + I G + FS ++G + KP P F + + P
Sbjct: 133 LAVVTNKPTKHVQ--PILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQI 190
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 107
L + DS + A +AG VV + + D + + D+
Sbjct: 191 LFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILK 240
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 68.0 bits (167), Expect = 8e-14
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ +A++ + +I F IVGS D+ A + LN++ +
Sbjct: 105 LVVATSKPTVFSK--QILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDA 162
Query: 60 LVIEDSVIGVVAGKAAGMEVVAV 82
++I D V+ + + V
Sbjct: 163 IMIGDREYDVIGALKNNLPSIGV 185
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 67.5 bits (165), Expect = 1e-13
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 1 MALASN---SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 57
A+ N + + + G E +DEV + KP ++F + ++P
Sbjct: 118 TAVIGNVMFWPGSYTRLLLE-RFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPE 176
Query: 58 SSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 107
SL I D+ + GM V + + + I S+ +L+
Sbjct: 177 ESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANLKD 227
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 67.5 bits (165), Expect = 1e-13
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + ++ + KI + ++ F ++ SD KP P IF +A K N++P +L
Sbjct: 113 LGIITDGNPVKQWEKI-LRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEAL 171
Query: 61 VIEDSVIG-VVAGKAAGMEVVAV---PSLPKQTHRYTAADEVINSLLDL 105
++ D + + K GM+ V ++ AD I++L L
Sbjct: 172 MVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESL 220
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 66.5 bits (162), Expect = 2e-13
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS- 59
A A + ++ + G P PD A LN+
Sbjct: 55 CAWIDELPEALSTPLAAPV------NDWMIAAPRPTAGWPQPDACWMALMALNVSQLEGC 108
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVP 83
++I + +G AG+ + +
Sbjct: 109 VLISGDPRLLQSGLNAGLWTIGLA 132
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 66.5 bits (163), Expect = 3e-13
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+A+ SN + A + + SF +G KP+PD+ E K L +
Sbjct: 129 LAVVSNKPNEAVQVLV---EELFPGSFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKC 185
Query: 60 LVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 107
+ I DS I + + + M+ +AV + A ++++ L
Sbjct: 186 VYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEE 235
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 65.8 bits (161), Expect = 4e-13
Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + SN++R ++ I S ++ KP I+ + PS ++
Sbjct: 110 VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV 169
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+D+ + G+ + + + +
Sbjct: 170 FFDDNADNIEGANQLGI----------TSILVKDKTTIPDYFAKV 204
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 63.3 bits (155), Expect = 3e-12
Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 59
+ + + ++ + F I GS D+ +A + + P +
Sbjct: 102 LYITTTKDTSTAQ--DMAKNLEIHHFFDGIYGSSPE--APHKADVIHQALQTHQLAPEQA 157
Query: 60 LVIEDSVIGVVAGKAAGMEVVAV 82
++I D+ ++ + G++ +A+
Sbjct: 158 IIIGDTKFDMLGARETGIQKLAI 180
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 62.8 bits (153), Expect = 7e-12
Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + ++S + + G + F I S+E KP P IF A K+ ++ ++
Sbjct: 118 VGMITDSDTEQAMAFL-DALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAV 176
Query: 61 VIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+ D+ + K GM + + ++ + D +++ L ++
Sbjct: 177 YVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREV 222
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 62.5 bits (152), Expect = 1e-11
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+A+ SN +E + G E F ++ S+ KP P IF EA + +MEP +
Sbjct: 125 LAVISNFD-RRLEGILG-GLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAA 182
Query: 61 VIEDSVIG-VVAGKAAGMEVVAVP---SLPKQTHRYTAADEVINSLLDLRP 107
+ D+ + +A GM V +L + ++ SL L P
Sbjct: 183 HVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLP 233
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 62.0 bits (151), Expect = 1e-11
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSS 59
+ + +N T ++ G F I S++ KP + F +R+ +
Sbjct: 121 LYIVTNGVSHTQYKRL-RDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHT 179
Query: 60 LVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
L+I DS+ + G+ AG++ + K I L +L
Sbjct: 180 LIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEEL 226
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 60.2 bits (146), Expect = 4e-11
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 1 MALASNSHRATIE-----SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 55
+ L SN++ + + + F S E++ KP P+IF + ++
Sbjct: 130 VYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGID 189
Query: 56 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 102
P + I+DS I + G+ T+ A ++ +
Sbjct: 190 PKETFFIDDSEINCKVAQELGI----------STYTPKAGEDWSHLF 226
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 60.2 bits (146), Expect = 5e-11
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ L +N R T KI F IV E + KP+P IF L ++P +
Sbjct: 139 LLLLTNGDRQTQREKI-EACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV 197
Query: 61 VIEDSVIG-VVAGKAAGME--VVAVPSLPKQTHRYTAADEVINSLLDL 105
++ D++ + G AG++ V S +++S+L+L
Sbjct: 198 MVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL 245
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 59.6 bits (145), Expect = 9e-11
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 1 MALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM-EPSS 58
+ +A++ I + F I GS+ T ++ N+ +
Sbjct: 129 LLVATSKPTVFAE--TILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDK 186
Query: 59 SLVIEDSVIGVVAGKAAGMEVVAV 82
+++ D ++ K G++ + V
Sbjct: 187 VIMVGDRKYDIIGAKKIGIDSIGV 210
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 58.6 bits (142), Expect = 2e-10
Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+AL SN+ +++ + + + F + S E++ KP+P IF A ++ ++
Sbjct: 114 LALVSNAS-PRVKTLLE-KFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYP---AV 168
Query: 61 VIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+ D + K + ++ + + + Y + + +L +
Sbjct: 169 HVGDIYELDYIGAKRSYVDPILL----DRYDFYPDVRDRVKNLREA 210
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 57.4 bits (139), Expect = 5e-10
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + SN R K+ G + F I+ S+++ KP P+IF A E SL
Sbjct: 125 LYILSNGFRELQSRKMR-SAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESL 183
Query: 61 VIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+I DS + GM + + I+SL +L
Sbjct: 184 MIGDSWEADITGAHGVGMHQAFYNVTERTVFPFQ-PTYHIHSLKEL 228
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 57.2 bits (138), Expect = 6e-10
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 110 RAILSNGAPDMLQALVAN-AGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL 168
Query: 61 VIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRPEKWGLPP 114
+ + V K G V V +L ++ T A + L +R E + P
Sbjct: 169 FVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 56.4 bits (136), Expect = 1e-09
Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+A+ SN + +++ + + + +D+++ KP P I+ A RL + P+
Sbjct: 124 VAILSNGNDEMLQAALKA-SKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVC 182
Query: 61 VIEDSVIGVVAGKAAGMEVVAVP-SLPKQTHRYTAADEVINSLLDL 105
+ + + G V + + + +NSL +L
Sbjct: 183 FVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSEL 228
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 55.3 bits (133), Expect = 3e-09
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+A+ SN +I++ +S+ G + F ++ D V+ KP ++ A + L ++ S+ L
Sbjct: 114 LAILSNGSPQSIDAVVSH-AGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAIL 172
Query: 61 VIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 105
+ + + G + + D + SL +
Sbjct: 173 FVASNAWDATGARYFGFPTCWINRTGNVFEEMGQ-TPDWEVTSLRAV 218
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 55.2 bits (132), Expect = 4e-09
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 1 MALASNSHRATIESKISY--QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 58
+ + S+ + + + E D K + + + A + ++
Sbjct: 149 VYIYSSGSVEAQKLLFGHSTEGDILELVDGHF--DTKIGHKVESESYRKIADSIGCSTNN 206
Query: 59 SLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 105
L + D A + A + V V P T +I S +L
Sbjct: 207 ILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL 255
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 54.0 bits (129), Expect = 1e-08
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 33/139 (23%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSV--IVGSDEVRT-----------GKPSPDIFLE 47
+ +A+ G F I + +V GKP+P ++
Sbjct: 234 LGIATGRPYTETVVPFE-NLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA 292
Query: 48 AAKRLN--------------MEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQ 88
A N + ++ DS+ +++ + G +
Sbjct: 293 ALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAG 352
Query: 89 THRYTAADEVINSLLDLRP 107
AD VIN L +LR
Sbjct: 353 ELEAHHADYVINHLGELRG 371
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 51.7 bits (124), Expect = 2e-08
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 1 MALASN---SHRATIESKISYQHGWNESFSVIVGSD----EVRTGKPSPDIFLEAAKRLN 53
A+ SN S I+ ++ G + F I S+ + KP IF L
Sbjct: 53 QAILSNTATSDTEVIKRVLT-NFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQ 111
Query: 54 MEPSSSLVIEDSVIG-VVAGKAAGMEVV---------AVPSLPKQTHRYTAADEVINSLL 103
++ + ++++ ++ ++ AG+ + LP + + +
Sbjct: 112 IDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFVIPVWDLADVP 171
Query: 104 DL 105
+
Sbjct: 172 EA 173
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 50.2 bits (119), Expect = 2e-07
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS- 59
A +H + ++ + KP F +A K + +
Sbjct: 166 FTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENA 225
Query: 60 LVIEDSVIGVVAGKAAGMEVVAV---PSLPKQTHRYTAADEVINSLLDLR 106
I+DS + G GM+ + + + VI+ +L+L
Sbjct: 226 YFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELP 275
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 49.2 bits (118), Expect = 2e-07
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME-VVAVPS-LPKQTHRYTAAD 96
KP P + L A L+++ ++S ++ D + + A AA + V V + P AAD
Sbjct: 131 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 190
Query: 97 EVINSLLDL 105
V+NSL DL
Sbjct: 191 WVLNSLADL 199
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 48.7 bits (117), Expect = 3e-07
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS----LPKQTHRYTA 94
KP P ++ + A+R +++ + + DS+ + A AG V +
Sbjct: 101 KPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPE 160
Query: 95 ADEVINSLLD 104
V L
Sbjct: 161 GTRVCEDLAA 170
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic
process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB:
2w11_A
Length = 201
Score = 44.8 bits (106), Expect = 7e-06
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ SN ++ + ++G F I ++ V+ KPSP ++ + +
Sbjct: 91 VYALSNGSINEVKQHLE-RNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG--AKEAF 147
Query: 61 VIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 105
++ + V+ K AGM + V + D ++N +L
Sbjct: 148 LVSSNAFDVIGAKNAGMRSIFVNRKNTIVD-PIGGKPDVIVNDFKEL 193
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 45.0 bits (106), Expect = 9e-06
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ L + E KI Q G ++ F I + P + ++ +
Sbjct: 130 VVLITKGDLFHQEQKIE-QSGLSDLFPRIEVV-----SEKDPQTYARVLSEFDLPAERFV 183
Query: 61 VIEDSVI-GVVAGKAAGMEVVAVPSLPKQTHRYTAADEV-------INSLLDL 105
+I +S+ V A G + P H +
Sbjct: 184 MIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAADEPRLREVPDPSGW 236
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 44.8 bits (107), Expect = 1e-05
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 96
GKP FLEA + + P +++I D V + GM + V +T +Y AAD
Sbjct: 178 GKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILV-----KTGKYKAAD 232
Query: 97 E---------VINSLLDL 105
E S
Sbjct: 233 EEKINPPPYLTCESFPHA 250
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 44.1 bits (105), Expect = 2e-05
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 96
GKPSP+ F A + + +E +++I D ++G V + GM + V +T ++ +D
Sbjct: 189 GKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQV-----RTGKFRPSD 243
Query: 97 E---------VINSLLDL 105
E +++L +
Sbjct: 244 EHHPEVKADGYVDNLAEA 261
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYT 93
KP+P + +EA KRL ++ SL++ D + + AGK AG+ + P R
Sbjct: 137 KPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPL 196
Query: 94 AADEVINSLLD 104
+ LL
Sbjct: 197 RDSSELGDLLA 207
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein),
struct genomics, PSI, protein structure initiative;
2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Length = 253
Score = 41.7 bits (97), Expect = 1e-04
Identities = 8/67 (11%), Positives = 19/67 (28%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 98
K + + + + S L + D+ + + A G+ +V
Sbjct: 187 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQV 246
Query: 99 INSLLDL 105
+ L
Sbjct: 247 YKNFETL 253
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 41.0 bits (96), Expect = 3e-04
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 26 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 85
F ++ S +V KP P I+ L PS + ++D + + GM + V
Sbjct: 147 FDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT 206
Query: 86 PK 87
Sbjct: 207 DT 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 56/173 (32%)
Query: 93 TAADEVINSLLDLRPE-----KWGLPPFQDWIEG--TLPSEPWYIGGPV-VKGLG----- 139
+ E ++ L+ + GL +W+E P + + + P+ +G
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 140 ---RGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTR--GVYKMV---MSIGWNP 191
+K+LG L L G + G+ V + W
Sbjct: 248 HYVVTAKLLGFTPGELR-----SYLK-----------GATGHSQGLVTAVAIAETDSWES 291
Query: 192 YFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHED 244
+F + K I L F+ +G R +P+ +L I ED
Sbjct: 292 FFVSVRKAIT-VL-------FF--------IGV-RCYEAYPNT-SLPPSILED 326
Score = 36.2 bits (83), Expect = 0.010
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 37/117 (31%)
Query: 152 LSTEGYS--DVLSEHPSG--VYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHE 207
T G+S D++ +P ++FG G + + + ++ + D KT + + E
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFG--GEKGKRIRENYSAMIFETIVDGKLKTEK--IFKE 1709
Query: 208 FDED-----FY--DEELH--------LVIVGY-----IRPEANFP--------SL-E 235
+E F L L ++ ++ + P SL E
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Score = 35.0 bits (80), Expect = 0.027
Identities = 59/311 (18%), Positives = 99/311 (31%), Gaps = 110/311 (35%)
Query: 9 RATIESKISYQHG-----WNESFSVIVGSDEVRTGKPS-PDIFL-------EAAKRLNME 55
R T++++ + G W E+ S D + + S P I + AK L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 56 PSSSLVIEDSVIGVVAGKAAGMEVVAV--------PSLPKQTHRYTAADEVINSL--LDL 105
P + + G G + G+ V AV S + + + I L + +
Sbjct: 260 PGE---LRSYLKGAT-GHSQGL-VTAVAIAETDSWESF------FVSVRKAITVLFFIGV 308
Query: 106 R-----PEKWGLPP--FQDWIEG--TLPSEPWYIGGP--VVKGLGR-------------- 140
R P LPP +D +E +PS P + L +
Sbjct: 309 RCYEAYPNT-SLPPSILEDSLENNEGVPS-------PMLSISNLTQEQVQDYVNKTNSHL 360
Query: 141 -GSKVLGIPTANLSTEGYSD-VLSEHPSGVYFGWAGLSTRGVYKMVMSIGWN----PYFD 194
K + I N G + V+S P +Y GL+ + K G + P+
Sbjct: 361 PAGKQVEISLVN----GAKNLVVSGPPQSLY----GLNLT-LRKAKAPSGLDQSRIPF-- 409
Query: 195 NAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANF--PSLETLIAKIHED---RKVAE 249
+ K + F L + + F L I++D V+
Sbjct: 410 SERK---LKFSNRF----------LPV------ASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 250 RALDL--PLYS 258
A D+ P+Y
Sbjct: 451 NAKDIQIPVYD 461
Score = 34.3 bits (78), Expect = 0.045
Identities = 52/294 (17%), Positives = 88/294 (29%), Gaps = 93/294 (31%)
Query: 3 LASNSHRATIESKISYQHGWNE-SFSV-----IVGS---DEVRTGKPSPDIFLEAAKRLN 53
+ + S R ++ HG E V + S ++ P P A
Sbjct: 1 MDAYSTRP-----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--- 52
Query: 54 MEPSSSLVIEDSVIGVVA-----GKAAGMEVVAVPSLPKQTHRYTAADEVINSL---LDL 105
EP++ + +G V+ K + V L + + Y ++ I++L L
Sbjct: 53 -EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQ 110
Query: 106 RPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP 165
+ L ++ I+ YI + P S S +
Sbjct: 111 ENDT-TLVKTKELIKN-------YI---------TARIMAKRPFDKKSN---SALFRAVG 150
Query: 166 SG---VY--FGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDE--DFYDEELH 218
G + FG G +G + + F+E D Y
Sbjct: 151 EGNAQLVAIFG--G---QG-------------------NTDDY----FEELRDLYQTYHV 182
Query: 219 LVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDL------PLYSKYRDDPYL 266
LV I+ A +L LI + KV + L++ P S D YL
Sbjct: 183 LVG-DLIKFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYL 231
Score = 28.9 bits (64), Expect = 2.3
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 24 ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 81
E+ +V RTG +E N +E+ V AG ++ V
Sbjct: 1824 EALQYVVERVGKRTGW-----LVEIVN-YN--------VENQQY-VAAGDLRALDTVT 1866
Score = 28.1 bits (62), Expect = 4.4
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 23/74 (31%)
Query: 204 LLHEFDEDF-YDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYR- 261
L EF+ + ++H L AK+ ++ + +
Sbjct: 87 CLTEFENCYLEGNDIH-----------------ALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 262 ----DDPYLKITSS 271
P+ K ++S
Sbjct: 130 RIMAKRPFDKKSNS 143
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 39.4 bits (93), Expect = 5e-04
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKP I A L +E +++ D+ I +G G++ + V S +P
Sbjct: 182 GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDI--QSGIQNGIDSLLVTSGFTPKSAVPT 239
Query: 88 QTHRYTAADEVINSLLDLRPE 108
V++SL + E
Sbjct: 240 LPTP---PTYVVDSLDEWTFE 257
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 38.7 bits (91), Expect = 5e-04
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
KP + M+ ++S VI D + + G+
Sbjct: 116 KPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGI 154
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 39.0 bits (92), Expect = 7e-04
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKP I +A + L + S +L++ D+ I +AG AGM+ + V + +
Sbjct: 182 GKPESIIMEQAMRVLGTDVSETLMVGDNYATDI--MAGINAGMDTLLVHTGVTKREHMTD 239
Query: 88 QTHRYTAADEVINSLLDLRPE 108
+ I+SL + P
Sbjct: 240 DMEK---PTHAIDSLTEWIPY 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 8e-04
Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 56/184 (30%)
Query: 82 VPSLPK-QTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKG-LG 139
K R ++ +LL+LRP K + ++ G LG
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAK-------------------NV---LIDGVLG 160
Query: 140 RGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKT 199
G + + V + ++ W L + V+ +
Sbjct: 161 SGKTWVALDVCL-----SYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQK--------- 204
Query: 200 IEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSK 259
LL++ D ++ H + S++ + ++ + + E L L L
Sbjct: 205 ----LLYQIDPNWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPY-ENCL-LVL--- 250
Query: 260 YRDD 263
+
Sbjct: 251 --LN 252
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 37.9 bits (89), Expect = 0.002
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKPSP I A ++ ++++ D++ I +AG AG+E + V S +
Sbjct: 175 GKPSPWIIRAALNKMQAHSEETVIVGDNLRTDI--LAGFQAGLETILVLSGVSSLDDIDS 232
Query: 88 QTHRYTAADEVINSLLDL 105
R + S+ ++
Sbjct: 233 MPFR---PSWIYPSVAEI 247
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus}
Length = 268
Score = 37.5 bits (88), Expect = 0.002
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAV 82
GKPS I EA L ++ V+ D + + AGKA G E V V
Sbjct: 186 GKPSEVIMREALDILGLDAKDVAVVGDQIDVDV--AAGKAIGAETVLV 231
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydro PSI-2; 1.55A
{Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 37.5 bits (88), Expect = 0.002
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKP+ I +A + LN+ + ++++ D+ I +AG ++ + V + +P
Sbjct: 181 GKPNAIIMNKALEILNIPRNQAVMVGDNYLTDI--MAGINNDIDTLLVTTGFTTVEEVPD 238
Query: 88 QTHRYTAADEVINSLLDLRPEK 109
+ V+ SL + +
Sbjct: 239 LPIQ---PSYVLASLDEWTFNE 257
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 37.1 bits (87), Expect = 0.003
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKP+P + +++ + ++ D + + GK AG+ + V + L +
Sbjct: 194 GKPNPLVVDVISEKFGVPKERMAMVGDRLYTDV--KLGKNAGIVSILVLTGETTPEDLER 251
Query: 88 QTHRYTAADEVINSLLDLRP 107
+ D V +L +L
Sbjct: 252 AETK---PDFVFKNLGELAK 268
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 36.1 bits (84), Expect = 0.007
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS---LPKQTHR 91
GKPSP +F + +++P+ +L++ D + I + G GM V + ++
Sbjct: 214 GKPSPYMFECITENFSIDPARTLMVGDRLETDI--LFGHRCGMTTVLTLTGVSRLEEAQA 271
Query: 92 YTAA-------DEVINSLLDLRP 107
Y AA + S+ DL
Sbjct: 272 YLAAGQHDLVPHYYVESIADLTE 294
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like
hydrolase, structural GE joint center for structural
genomics, JCSG; 2.20A {Burkholderia xenovorans}
Length = 231
Score = 32.1 bits (72), Expect = 0.16
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ S+ KI+ + G + + ++ L+ +
Sbjct: 114 TVILSDGDVVFQPRKIA-RSGLWDEV------EGRVLIYIHKELMLDQVMEC-YPARHYV 165
Query: 61 VIEDSVIGVVAGKAA-GMEVVAV-------PSLPKQTHRYTAADEVINSLLDL 105
+++D + + A K A G + V PK+ + AD + + DL
Sbjct: 166 MVDDKLRILAAMKKAWGARLTTVFPRQGHYAFDPKEISSHPPADVTVERIGDL 218
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genom riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii}
Length = 263
Score = 31.7 bits (73), Expect = 0.17
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 38 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 87
GKP+ ++ + ++ D + I K GM+ + V + + K
Sbjct: 186 GKPNEPMYEVVREMFP--GEELWMVGDRLDTDI--AFAKKFGMKAIMVLTGVSSLEDIKK 241
Query: 88 QTHRYTAADEVINSLLDLRP 107
++ D V+ S+ +L
Sbjct: 242 SEYK---PDLVLPSVYELID 258
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG,
structural genomics, midwest center for structur
genomics; 1.60A {Porphyromonas gingivalis}
Length = 122
Score = 29.4 bits (66), Expect = 0.48
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 192 YFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEAN 230
YF + + E +D+ +EE+ LV + ++ AN
Sbjct: 84 YFKESTTDSLEEAMQELGKDYSEEEIRLVRIKFLSEMAN 122
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 29.6 bits (67), Expect = 1.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 188 GWNPYFDNAEKTIEPWLLHEFDE-DFY---DEEL 217
W+ PWLL FD+ +FY +EEL
Sbjct: 1053 AWDKLVIGDHPIDHPWLLTPFDQVEFYPVTEEEL 1086
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 29.1 bits (66), Expect = 1.3
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 38 GKPSPDIFLEAAKRL----NMEPSSSLVIEDSV---IGVVAGKAAGMEVVAV 82
GKP +F+ A L + L++ D++ I + G G++ V
Sbjct: 203 GKPDSQMFMFAYDMLRQKMEISKREILMVGDTLHTDI--LGGNKFGLDTALV 252
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 28.8 bits (64), Expect = 1.8
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 17 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 67
S+ + W+ S I+G +VRT + D+F K+ +++ +
Sbjct: 260 SFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIH 310
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 28.1 bits (62), Expect = 2.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 114 PFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLS 162
+ Y GG V+ G + ++G +A + GY +S
Sbjct: 148 TMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSAGGNGVGYCSCVS 196
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 28.5 bits (64), Expect = 2.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 182 KMVMSIGWNPYFDNAEKTIEPWLLH 206
K + ++G+ F E + P +L
Sbjct: 269 KALNNLGYEGLFPTDETKVSPAILS 293
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D,
NESG, structural genomics, PSI-2; 2.40A {Synechococcus
elongatus pcc 6301}
Length = 161
Score = 27.4 bits (61), Expect = 3.9
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 144 VLGIPTANLSTEGY-------SDVLSEHPSGVY--FGWAGLSTRGVYKMVMSIGWNPYFD 194
VLG P + S + ++ G++ +G + ++G + F
Sbjct: 56 VLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYGGDDEPIDALLAQFRNLGLHTAFP 115
Query: 195 NAE 197
Sbjct: 116 PIR 118
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 27.1 bits (60), Expect = 6.5
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 68 GVVAGKAAGMEVVAVPSLPKQTHRYTA-----ADEVINSLLDLRPEKWGLP-PFQD 117
+ A A E+ A Y + D I+SL D+ L D
Sbjct: 68 AMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGD 123
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli} PDB: 3rpu_A
Length = 440
Score = 27.3 bits (60), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 100 NSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 131
+ LLD+R E+ L + + G LP + Y
Sbjct: 321 DRLLDMRDEEMALRD--EEVTGELPEDLEYEE 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.408
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,446,046
Number of extensions: 278092
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 95
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)