RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023972
(274 letters)
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 147
Score = 145 bits (366), Expect = 2e-44
Identities = 67/141 (47%), Positives = 101/141 (71%)
Query: 127 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 186
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 63
Query: 187 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 246
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 64 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 123
Query: 247 VAERALDLPLYSKYRDDPYLK 267
A++ L+LP Y K ++D + +
Sbjct: 124 EAKKRLELPEYLKIKEDNFFQ 144
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 154
Score = 142 bits (358), Expect = 4e-43
Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 106 RPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP 165
RPE G + ++ P G VV G GRGSK LGIPTAN+S + ++L
Sbjct: 1 RPEIVG----PEKVQ---SPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRD 53
Query: 166 SGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYI 225
SGVYFG+ + + V+ MVMS+GWNPY+ N ++ E L+ EDFY+E + ++++GYI
Sbjct: 54 SGVYFGY-AMVQKRVFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYI 112
Query: 226 RPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLK 267
RPE N+ L+ LI IH D +VA ++D P YS Y+ DP+ K
Sbjct: 113 RPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKDPFFK 154
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 130
Score = 107 bits (268), Expect = 6e-30
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 128 WYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSI 187
+ I G V K G K LG PTAN+ V + GVY L VM++
Sbjct: 2 FEIEGIVHKDREFGRK-LGFPTANIDRGNEKLV--DLKRGVYLVRVHLPDGKKKFGVMNV 58
Query: 188 GWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKV 247
G+ P +A + +F+ D Y + L L ++ ++R E F S+E L A I +D K
Sbjct: 59 GFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQDVKS 118
Query: 248 AERALDLPLYSK 259
A +D + SK
Sbjct: 119 ARNMIDDIINSK 130
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
[TaxId: 9606]}
Length = 253
Score = 65.2 bits (157), Expect = 5e-13
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 2/107 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + S+ + + + V D K + + + A + ++ L
Sbjct: 146 VYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNIL 205
Query: 61 VIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 105
+ D A + A + V V P T +I S +L
Sbjct: 206 FLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL 252
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 57.5 bits (138), Expect = 3e-10
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 33/138 (23%)
Query: 1 MALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTG-----------KPSPDIFLE 47
+ +A+ G F I + +V KP+P ++
Sbjct: 234 LGIATGRPYTETV-VPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA 292
Query: 48 AAKRLNME--------------PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--- 90
A N + ++ DS+ +++ + G + + K
Sbjct: 293 ALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAG 352
Query: 91 --RYTAADEVINSLLDLR 106
AD VIN L +LR
Sbjct: 353 ELEAHHADYVINHLGELR 370
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 54.8 bits (130), Expect = 9e-10
Identities = 13/84 (15%), Positives = 30/84 (35%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+ + SN++R ++ I S ++ KP I+ + PS ++
Sbjct: 103 VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV 162
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPS 84
+D+ + G+ + V
Sbjct: 163 FFDDNADNIEGANQLGITSILVKD 186
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId:
562]}
Length = 218
Score = 53.7 bits (127), Expect = 3e-09
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 43 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINS 101
++L+ A +L ++P + + +EDSV G++A KAA M + VP+ Q R+ A+ ++S
Sbjct: 148 QVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSS 207
Query: 102 LLDLRPE 108
L +L +
Sbjct: 208 LTELTAK 214
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 222
Score = 53.2 bits (126), Expect = 5e-09
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 19 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 78
++ F ++ S +V KP P I+ L +P+ + ++D + + GM
Sbjct: 137 MCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMV 196
Query: 79 VVAVPS 84
+ V +
Sbjct: 197 TILVHN 202
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 51.7 bits (122), Expect = 2e-08
Identities = 16/77 (20%), Positives = 27/77 (35%)
Query: 8 HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 67
RA + F ++ S +V KP P I+ L PS + ++D
Sbjct: 128 DRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGA 187
Query: 68 GVVAGKAAGMEVVAVPS 84
+ + GM + V
Sbjct: 188 NLKPARDLGMVTILVQD 204
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 245
Score = 51.3 bits (121), Expect = 2e-08
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
A+ SN ++ + G +SF ++ D R KP PD + + L + P+ L
Sbjct: 110 RAILSNGAPDMLQ-ALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL 168
Query: 61 VIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRPEKWGLPP 114
+ + V K G V V +L ++ T A + L +R E + P
Sbjct: 169 FVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227
>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 225
Score = 51.0 bits (120), Expect = 3e-08
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 19 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 78
N + K + + + + S L + D+ + + A G+
Sbjct: 140 SLDLNSYIDGYFDIN-TSGKKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIA 198
Query: 79 VVAVPSLPKQTHRYTAADEVINSLLDL 105
+V + L
Sbjct: 199 TGLASRPGNAPVPDGQKYQVYKNFETL 225
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis
[TaxId: 1358]}
Length = 221
Score = 48.7 bits (114), Expect = 2e-07
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 16 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 75
+ + F I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +
Sbjct: 122 LLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDS 181
Query: 76 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 108
G + V ++ E
Sbjct: 182 GALPIGVGR----PEDLGDDIVIVPDTSHYTLE 210
>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 222
Score = 48.3 bits (113), Expect = 2e-07
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 8 HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 67
HR + + KP PDIFL A + + P +V+EDSV
Sbjct: 110 HRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVH 169
Query: 68 GVVAGKAAGMEVVAVPS------LPKQTHRYTAADEVINSLLDL 105
G+ +AAGM V+ A+ VI+ + DL
Sbjct: 170 GIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDL 213
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 187
Score = 45.9 bits (107), Expect = 1e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 40 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 84
P+P+ L ++ + LVI D I + AG+AAG++ S
Sbjct: 135 PNPESMLYLREKYQISSG--LVIGDRPIDIEAGQAAGLDTHLFTS 177
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 44.8 bits (105), Expect = 2e-06
Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 12/112 (10%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 60
+A AS + +++ + F F + + S +
Sbjct: 65 VAAASRTSEIQGANQLLELFDLGKYFIQREIYP-----GSKVTHFERLHHKTGVPFSQMV 119
Query: 61 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL 112
+D ++ G+ + + + + L + GL
Sbjct: 120 FFDDENRNIIDVGRLGVTCIHIR------DGMS-LQTLTQGLETFAKAQAGL 164
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 45.6 bits (106), Expect = 2e-06
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 43 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 102
+ + + ++ I D + V + +G++ + + I +L
Sbjct: 141 EAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINF------LESTYEGNHRIQAL 194
Query: 103 LDLRP 107
D+
Sbjct: 195 ADISR 199
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas
sp., strain YL [TaxId: 306]}
Length = 220
Score = 45.6 bits (106), Expect = 2e-06
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 18 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
G + F ++ D V+ KP ++ A + L ++ S+ L + + + G
Sbjct: 128 SHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATGARYFGF 187
Query: 78 EVVAVPSLPKQTHRY-TAADEVINSLLDL 105
+ D + SL +
Sbjct: 188 PTCWINRTGNVFEEMGQTPDWEVTSLRAV 216
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase
{Lactobacillus plantarum [TaxId: 1590]}
Length = 207
Score = 43.0 bits (99), Expect = 1e-05
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 62 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
I DSV +AA ++ + LD+
Sbjct: 160 IGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLDI 203
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 41.9 bits (97), Expect = 3e-05
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 33 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 92
+ L+ ++I DSV V A K + + A L +
Sbjct: 138 CKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDL-CFARDYLLNECREQ 196
Query: 93 TAADEVINSLLDLRPEKWGLPPFQDWIE 120
++R E + Q+W++
Sbjct: 197 NLNHLPYQDFYEIRKEIENVKEVQEWLQ 224
>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus
cereus [TaxId: 1396]}
Length = 257
Score = 41.7 bits (96), Expect = 4e-05
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 1 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSS 59
+ + R ++ +V D+V G+P P + + A L +
Sbjct: 118 IGSTTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHM 177
Query: 60 LVIEDSVIGVVAGKAAGMEVVAV 82
+ + D+V + G+ AGM V V
Sbjct: 178 IKVGDTVSDMKEGRNAGMWTVGV 200
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph
{Haemophilus somnus [TaxId: 731]}
Length = 224
Score = 39.5 bits (90), Expect = 2e-04
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 18 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
G + FS ++G + KP P F + + P L + DS + A +AG
Sbjct: 130 TAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGC 189
Query: 78 EVVAVPS--LPKQTHRYTAADEVINSLLDL 105
VV + + D + + D+
Sbjct: 190 AVVGLTYGYNYNIPIAQSKPDWIFDDFADI 219
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional
protein HisB, phosphatase domain {Escherichia coli
[TaxId: 562]}
Length = 161
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 18 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
+ +DE KP + M+ ++S VI D + + G+
Sbjct: 83 GVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGI 142
Query: 78 EVVAV 82
+
Sbjct: 143 NGLRY 147
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 37.1 bits (84), Expect = 0.001
Identities = 6/56 (10%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 51 RLNMEPSSSLVIEDSVI-GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 105
+ ++ ++ + D+ + K GM + + ++ + D +++ L ++
Sbjct: 167 KAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREV 222
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 210
Score = 36.0 bits (81), Expect = 0.003
Identities = 7/56 (12%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 52 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 105
+ P +++I D+ ++ + G++ +A+ + D + + L++
Sbjct: 150 HQLAPEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEV 205
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium
tepidum [TaxId: 1097]}
Length = 228
Score = 35.5 bits (80), Expect = 0.004
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 50 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 105
N PS ++I D+ + + +AV + + + + +
Sbjct: 162 TGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAET 219
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 33.8 bits (76), Expect = 0.013
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 18 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 77
++E+ + + KP+P + +EA KRL ++ SL++ D + + AGK AG+
Sbjct: 108 LACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGL 167
Query: 78 EVVAVPSLPKQTHRYTAADEVINSLLDL 105
+ I L D
Sbjct: 168 AQGWLVD----GEAAVQPGFAIRPLRDS 191
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 32.5 bits (72), Expect = 0.045
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 49 AKRLNMEPSSSLVIEDSVI-GVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 105
L ++P +++ D++ + G AG++ S +++S+L+L
Sbjct: 174 CDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL 233
>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate
phosphatase GmhB {Escherichia coli [TaxId: 562]}
Length = 182
Score = 31.1 bits (69), Expect = 0.083
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 39 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-GMEVVAVPS-LPKQTHRYTAAD 96
KP P + L A L+++ ++S ++ D + + A AA V V + P AAD
Sbjct: 108 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 167
Query: 97 EVINSLLDL 105
V+NSL DL
Sbjct: 168 WVLNSLADL 176
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 104
Score = 28.2 bits (63), Expect = 0.46
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 172 WAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVG 223
W + V K + + G NP+F + E+ I+ L + + + V
Sbjct: 12 WCVVLNGAVIKRLGTKGINPFFQSEEE-IQQKLTASLLPQLPEGKFNAVYFY 62
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
{Foot-and-mouth disease virus FMDV [TaxId: 12110]}
Length = 199
Score = 28.1 bits (62), Expect = 0.99
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 114 PFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYS 158
+ Y GG V+ G + ++G +A + GY
Sbjct: 141 TMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSAGGNGVGYC 185
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis
[TaxId: 1423]}
Length = 171
Score = 26.7 bits (58), Expect = 2.7
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 219 LVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPY 265
LVI G R + IA ++ + LP+++ +
Sbjct: 4 LVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSE 50
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 25.6 bits (55), Expect = 6.7
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 50 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 109
K L+M + ++ + V GMEV + P+ + A L +
Sbjct: 208 KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKA 267
Query: 110 WGLPPFQD 117
GLP D
Sbjct: 268 LGLPNAID 275
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 551
Score = 25.5 bits (56), Expect = 7.4
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 226 RPEANFPSLETLIAKIHEDRKVAERALDLP 255
+P ++F ++ IA+ + AE + +
Sbjct: 54 KPVSDFDLIDHFIARYGINLNRAEEVMAMD 83
>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 106
Score = 24.3 bits (52), Expect = 9.0
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 35/120 (29%)
Query: 122 TLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVL--SEHPSGVYFGWAGLSTRG 179
++ +E WY G ++ +L +E+P G + +T+G
Sbjct: 1 SIQAEEWYFG-------------------KITRRESERLLLNAENPRGTFLVRESETTKG 41
Query: 180 VYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIA 239
Y + +S N N ++ + + + D + YI F SL+ L+A
Sbjct: 42 AYCLSVSDFDNAKGLN----VKHYKIRKLDSGGF----------YITSRTQFNSLQQLVA 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.408
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,074
Number of extensions: 51656
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 34
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.5 bits)