BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023974
         (274 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GGG|D Chain D, The Crystal Structure Of A. Aeolicus Prephenate
           Dehydrogenase In Complex With Tyrosine And Nad+
 pdb|3GGG|A Chain A, The Crystal Structure Of A. Aeolicus Prephenate
           Dehydrogenase In Complex With Tyrosine And Nad+
 pdb|3GGO|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus With Hpp And Nadh
 pdb|3GGO|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus With Hpp And Nadh
 pdb|3GGO|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus With Hpp And Nadh
 pdb|3GGO|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus With Hpp And Nadh
 pdb|3GGP|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus In Complex With Hydroxyphenyl Propionate And
           Nad+
 pdb|3GGP|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus In Complex With Hydroxyphenyl Propionate And
           Nad+
 pdb|3GGP|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus In Complex With Hydroxyphenyl Propionate And
           Nad+
 pdb|3GGP|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
           Aeolicus In Complex With Hydroxyphenyl Propionate And
           Nad+
 pdb|3GGG|B Chain B, The Crystal Structure Of A. Aeolicus Prephenate
           Dehydrogenase In Complex With Tyrosine And Nad+
 pdb|3GGG|C Chain C, The Crystal Structure Of A. Aeolicus Prephenate
           Dehydrogenase In Complex With Tyrosine And Nad+
          Length = 314

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 71  DEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIIS 110
           DEGT S+   EDF+  D+  L S    F+E  +++  I+S
Sbjct: 81  DEGTTSIAKVEDFSP-DFVMLSSPVRTFREIAKKLSYILS 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,282,657
Number of Sequences: 62578
Number of extensions: 268332
Number of successful extensions: 771
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 13
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)