BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023974
         (274 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68DQ2|CRBG3_HUMAN Beta/gamma crystallin domain-containing protein 3 OS=Homo sapiens
           GN=CRYBG3 PE=2 SV=2
          Length = 1022

 Score = 35.0 bits (79), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 194 DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC 250
           D   + +  R +PGA+V +    G +  QK R      I S L DQ+ L    GN+C
Sbjct: 943 DTCLDVIGGRDTPGAKVALWTEHG-QFRQKWRLNKNGTISSYLSDQLVLDVKGGNYC 998


>sp|P90593|GPDA_TRYBB Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal
           OS=Trypanosoma brucei brucei GN=GPD PE=3 SV=1
          Length = 354

 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 183 LYFLPAMPFPLDQVFETLANRCSPGARVVI 212
           +YFLP  P P +  F   A  C+ GA +V+
Sbjct: 54  VYFLPGAPLPANLTFTADAEECAKGAEIVL 83


>sp|Q26756|GPDA_TRYBR Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal
           OS=Trypanosoma brucei rhodesiense GN=GPD PE=3 SV=1
          Length = 354

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 183 LYFLPAMPFPLDQVFETLANRCSPGARVVI 212
           +YFLP  P P +  F   A  C+ GA +V+
Sbjct: 54  VYFLPGAPLPANLTFTADAEECAKGAEIVL 83


>sp|C9SE96|ARO1_VERA1 Pentafunctional AROM polypeptide OS=Verticillium albo-atrum (strain
            VaMs.102 / ATCC MYA-4576 / FGSC 10136) GN=VDBG_03429 PE=3
            SV=1
          Length = 1574

 Score = 31.6 bits (70), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 109  ISAGEIDESSKVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE- 167
            +SA EI  +  +L +I+++ F       S S    +H+SLF L G+  KY  V+  Q + 
Sbjct: 1262 LSAAEIRRALFLLGNINAQSFHLFGKPISKSRSPALHNSLFNLTGLPHKYGLVETDQADE 1321

Query: 168  ---LIYVPDKWGPLDVVFLYFLPAMPFPLDQVFET 199
               +I  PD +G   V     L  MP  LD+V E+
Sbjct: 1322 VAAVIREPD-FGGASVTIPLKLDVMPL-LDEVSES 1354


>sp|A8TX70|CO6A5_HUMAN Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1
          Length = 2615

 Score = 31.2 bits (69), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 70  PDEGTVSVVNFEDFTEIDWSFLD-SDELNFKEHIQRIDQIISAGEIDESSKVLVSISSEE 128
           PD+  V VV + D TE+++   D S++++ ++ I  I Q+       ++   ++ I    
Sbjct: 476 PDKVRVGVVQYSDDTEVEFYITDYSNDIDLRKAIFNIKQLTGGTYTGKALDYILQIIKNG 535

Query: 129 FVDRVVESSPSLLLVVHDSL 148
             DR +   P  L+V+ D +
Sbjct: 536 MKDR-MSKVPCYLIVLTDGM 554


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,017,909
Number of Sequences: 539616
Number of extensions: 4208071
Number of successful extensions: 10780
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10777
Number of HSP's gapped (non-prelim): 10
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)