BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023975
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 108/286 (37%), Gaps = 54/286 (18%)
Query: 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHT 71
V +IG GV G A++L+ F ++LI + + SL +A+++ S + ++
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64
Query: 72 DYLVNGRI--VASP---AINITENEVLTAEGRRVVYDYLVIATGHK--------DPVPK- 117
D+ RI + P A+++ + +G + D +VIATG + +P
Sbjct: 65 DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 118 ----------------TRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF 160
T RL G G E+A VT++ G LL
Sbjct: 125 VTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA--TTARKLGLSVTILEAGDELLVRV 182
Query: 161 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPV 219
+G + G R L V V+LG V S + + S G + AD +C G +P
Sbjct: 183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEP- 241
Query: 220 GSDWLKDTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDIT 260
D L L D + V K +FA+GD+
Sbjct: 242 ----------ADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVA 277
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 20/203 (9%)
Query: 76 NGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHK---------DPVPKTRTERLNQ 125
N I S A+ + E+ + L+ G R+ + ++IATG K + T E +
Sbjct: 128 NVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFD- 186
Query: 126 YQAGPTGVEL--AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177
+ P + + G I V+F K TL+H+G +L D +++K
Sbjct: 187 LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKG 246
Query: 178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 237
+ + V+ +E + + G TI AD L TG+ + L ++ G
Sbjct: 247 ISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFG 306
Query: 238 MLMVDENLRVKGQKNIFAIGDIT 260
++VDE + +I+A+GD+T
Sbjct: 307 AVVVDEKMTTN-VSHIWAVGDVT 328
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 133 VELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNL 188
VE AG A P KVTL ++ + +L ++ L + +++ E +V+L
Sbjct: 204 VEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 248
++ +GS +G T++ D + G+ ++ L+ + L G + VDE R
Sbjct: 264 NT--DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN 321
Query: 249 GQKNIFAIGDITD 261
NI+AIGDITD
Sbjct: 322 -VPNIYAIGDITD 333
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 133 VELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNL 188
VE AG A P KVTL ++ + +L ++ L + +++ E +V+L
Sbjct: 201 VEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSL 260
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 248
++ +GS +G T++ D + G+ ++ L+ + L G + VDE R
Sbjct: 261 NT--DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN 318
Query: 249 GQKNIFAIGDITD 261
NI+AIGDITD
Sbjct: 319 -VPNIYAIGDITD 330
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 47/278 (16%)
Query: 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
+VV++G G G +AK L + +VT+ID + + L + + + ++
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 69
Query: 75 VNGRIVASPAINITENEVLTAEGRRVV--------YDYLVIATGHKDPVPKTR------- 119
R + I + E L GR+VV YD LV+ATG + P+ +
Sbjct: 70 YRKRGI---EIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLT 126
Query: 120 ------TERLNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP 163
+R+ + G G+ELAG +A V L+H+G+ L +
Sbjct: 127 LRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDE 183
Query: 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDW 223
+ + +D L V L + L++ EG LT++G I G D
Sbjct: 184 ELSNMIKDMLEETGVKFFLNSEL-LEANEEGV---LTNSG-FIEGKVKICAIGIVPNVDL 238
Query: 224 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
+ + + T +++D+N R K+++AIGD +
Sbjct: 239 AR----RSGIHTGRGILIDDNFRTSA-KDVYAIGDCAE 271
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
Length = 550
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 5 RQQQSEGKNKRVVVIGGGVAG----SLVAKSLQFSADVTLI 41
R GK +++++GGG AG S + K+LQ +AD+TL+
Sbjct: 17 RGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLL 57
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLIDPKEYFEITWASL--RAMVEPS 61
N VV++G G+AG VA L+ S D T+I P ++ A L +A E
Sbjct: 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI-PHHLPPLSKAYLAGKATAESL 62
Query: 62 FGKR--SVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD-PVP 116
+ + + L+ G V AIN +V+ ++GR + YD LV+ATG + P+P
Sbjct: 63 YLRTPDAYAAQNIQLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRPLP 118
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVEPS 61
VV++G G G A ++L +VTLI +YF+ + W + P
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFP- 61
Query: 62 FGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 ------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVEPS 61
VV++G G G A ++L +VTLI +YF+ + W + P
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFP- 61
Query: 62 FGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 ------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLIDPKEYFEITWASL--RAMVEPS 61
N VV++G G+AG VA L+ S D T+I P ++ A L +A E
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI-PHHLPPLSKAYLAGKATAESL 61
Query: 62 FGKR--SVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD-PVP 116
+ + + L+ G V AIN +V+ ++GR + YD LV+ATG + P+P
Sbjct: 62 YLRTPDAYAAQNIQLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRPLP 117
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 120/304 (39%), Gaps = 65/304 (21%)
Query: 16 VVVIGGGVAGSLVA-KSLQFSADVTLIDPKEYF-----------EITW--ASLRAMVE-- 59
++ IGGG G VA K+ F V LI+ K ++ W + L V
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDA 66
Query: 60 PSFGKRSVINHTDY--LVNGRIVASPAIN--------------------ITENEVLTAEG 97
P FG ++ D+ LV GR AIN + + EG
Sbjct: 67 PGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEG 126
Query: 98 RRVVYDYLVIATGHKDPVPK-----------------TRTERLNQYQAGPTGVELAGEIA 140
+R+ D++VIATG + VP+ + +R+ AG G+ELAG +
Sbjct: 127 QRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLR 186
Query: 141 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLDSVSEGSDTYL 199
E VT+V RLL P + + ++ ++ L V L+ ++G+ T +
Sbjct: 187 SFGSE--VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGT-TLV 243
Query: 200 TSTGDTINA-DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD--ENLRVKGQKNIFAI 256
G + D G+ + L + ++GM+ D +N V G ++A+
Sbjct: 244 AQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPG---VYAL 300
Query: 257 GDIT 260
GDIT
Sbjct: 301 GDIT 304
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK 112
+I+ N V T G+++ YDYLVIATG K
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPK 108
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK 112
+I+ N V T G+++ YDYLVIATG K
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPK 108
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 117/275 (42%), Gaps = 39/275 (14%)
Query: 12 KNKRVVVIGGGVAGSLVAKS-LQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-IN 69
K+ +++++G G AG AK+ L D+T+I+ ++Y L ++ + + I
Sbjct: 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIK 67
Query: 70 HTDYLV--NGRIVASP-AINITENEVLTA--EGRRVVYDYLVIATG---HKDPVPKTRTE 121
D+ N +++ S A +I N L G ++ Y+ L+IA+G +K VP E
Sbjct: 68 KNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA-DE 126
Query: 122 RLNQY----------QAGPTGVELAGEIAVDFPEKKVTLVHKGSR-----LLEFIGPKAG 166
+ Y + G + E ++ G+ +LE+ +
Sbjct: 127 IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQL 186
Query: 167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD 226
D+ + K+D +LG ++ +S E GD I + C G D++KD
Sbjct: 187 DRDGGLFLKDKLD-RLGIKIYTNSNFE-------EMGDLIRSSCVITAVGVKPNLDFIKD 238
Query: 227 TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
T + + ++V++++ K+I+A GD+ +
Sbjct: 239 T----EIASKRGILVNDHMET-SIKDIYACGDVAE 268
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 107 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 141
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 202 TGDTINADCHFLCTG---KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
T +TI TG +PV +D K ++S + L V++ L+VKG NIFAIGD
Sbjct: 315 TEETIPYGTLIWATGNKARPVITDLFKKIPEQNS--SKRGLAVNDFLQVKGSNNIFAIGD 372
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 202 TGDTINADCHFLCTG---KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
T +TI TG +PV +D K ++S + L V++ L+VKG NIFAIGD
Sbjct: 284 TEETIPYGTLIWATGNKARPVITDLFKKIPEQNS--SKRGLAVNDFLQVKGSNNIFAIGD 341
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 6 QQQSEGKNKRVVVIGGGVAG-SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
Q + K+KR+++IGGG G + + K +TL+ P L + P FGK
Sbjct: 6 QLAHQLKDKRILLIGGGEVGLTRLYKLXPTGCKLTLVSP---------DLHKSIIPKFGK 56
Query: 65 R-SVINHTDYLVNGRIVASPAINITENEV 92
+ DY + + +P + T+NE+
Sbjct: 57 FIQNKDQPDYREDAKRFINPNWDPTKNEI 85
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 129 GPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE--- 184
G VE AG P + +VTL ++G +L ++ L + + + E
Sbjct: 197 GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPA 256
Query: 185 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LDTHGMLMVD 242
+V L++ +GS + +G ++ D + G+ S KD L+++ + +G + VD
Sbjct: 257 KVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMIKNGGVQVD 311
Query: 243 ENLRVKGQKNIFAIGDITD 261
E R NI+AIGD+T+
Sbjct: 312 EYSRTN-VSNIYAIGDVTN 329
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 129 GPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE--- 184
G VE AG P + +VTL ++G +L ++ L + + + E
Sbjct: 197 GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPA 256
Query: 185 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LDTHGMLMVD 242
+V L++ +GS + +G ++ D + G+ S KD L+++ + +G + VD
Sbjct: 257 KVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMIKNGGVQVD 311
Query: 243 ENLRVKGQKNIFAIGDITD 261
E R NI+AIGD+T+
Sbjct: 312 EYSRTN-VSNIYAIGDVTN 329
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 129 GPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE--- 184
G VE AG P + +VTL ++G +L ++ L + + + E
Sbjct: 196 GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPA 255
Query: 185 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LDTHGMLMVD 242
+V L++ +GS + +G ++ D + G+ S KD L+++ + +G + VD
Sbjct: 256 KVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMIKNGGVQVD 310
Query: 243 ENLRVKGQKNIFAIGDITD 261
E R NI+AIGD+T+
Sbjct: 311 EYSRTN-VSNIYAIGDVTN 328
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 129 GPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE--- 184
G VE AG P + +VTL ++G +L ++ L + + + E
Sbjct: 198 GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPA 257
Query: 185 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LDTHGMLMVD 242
+V L++ +GS + +G ++ D + G+ S KD L+++ + +G + VD
Sbjct: 258 KVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMIKNGGVQVD 312
Query: 243 ENLRVKGQKNIFAIGDITD 261
E R NI+AIGD+T+
Sbjct: 313 EYSRTN-VSNIYAIGDVTN 330
>pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 201
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE 96
G R ++NH LVNGRIV P+ + + A
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSYRCKPQDTIMAR 139
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID--PKEYFEITW 51
K KRVV IGGG +G++ A S+ ++ +VT+I+ PK E +
Sbjct: 154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAY 196
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSAD--VTLI-------DPKEYFEITWASLR 55
R + N +V++GGG AGSL+A L D V LI DP + W +L+
Sbjct: 9 RAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQ 68
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLI-------DPKEYFEITWAS 53
++G + V++GGG AG+ VA L + +VT++ +P++ EIT S
Sbjct: 2 TDGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPS 53
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 284 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 322
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 7 QQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLI 41
+Q E K +++G G AGS++A+ L S LI
Sbjct: 23 EQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLI 57
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2Z10|A Chain A, Crystal Structure Of Putative Acetyltransferase
pdb|2Z11|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 132 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNL-- 188
G E+AG I+V PE + + G+ L + F G A + + L+ +V ERV
Sbjct: 71 GKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKXLLLRHAFEVLRAERVQFKV 130
Query: 189 DSVSEGSDTYLTSTG 203
D +E S L + G
Sbjct: 131 DLRNERSQRALEALG 145
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 114 PVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS 155
PV K TERL V A + A+D K VTLVHKG+
Sbjct: 210 PVSKEGTERL---------VRKAIQYAIDNDRKSVTLVHKGN 242
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 3 SRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
+R + EG KR++VIGGG G + + + A+VTLI+
Sbjct: 159 TRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIE 199
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 29/194 (14%)
Query: 88 TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKK 147
T+ ++L EGR + D ++ G + +N+ G GVE G ++ E
Sbjct: 212 TKAQILEREGR--LPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGH-GIETGEHG 268
Query: 148 VTLVHKGSRLLEFIGPKAGD-KTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTG-- 203
L H R+ + G KA +T D I + + G LD S G YL STG
Sbjct: 269 APLKH--GRVGIYFGMKAPMMQTEDGQIEESYSISAG----LDFPSVGPQHAYLNSTGRA 322
Query: 204 -------DTINADCHFLCTGKPV-----GSDWLKDTI--LKDSLDTHGMLMVDENLRVKG 249
D LC + + S L + ++++ D +L+V NL +G
Sbjct: 323 DYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVV--NLSGRG 380
Query: 250 QKNIFAIGDITDIR 263
K+IF + DI R
Sbjct: 381 DKDIFTVHDILKAR 394
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 203 GDTINADCHFLC---TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
G+TI AD L TG P LK++ D +D G + D N+ N++A+GD
Sbjct: 254 GNTIPADITILLPPYTGNPA----LKNST-PDLVDDGGFIPTDLNMVSIKYDNVYAVGDA 308
Query: 260 TDIRV 264
+ V
Sbjct: 309 NSMTV 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,016,686
Number of Sequences: 62578
Number of extensions: 333930
Number of successful extensions: 1138
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 98
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)