BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023975
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum
GN=aifA PE=3 SV=1
Length = 408
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 143/291 (49%), Gaps = 44/291 (15%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
KRV++IG G GS VAK L + +VT+++ K+ F + AS+RA+VEP K+ I +
Sbjct: 28 KRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKL 87
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQY 126
L NG+ + I I+ V +G+ + +DYLVIATG K P+ K + TE N Y
Sbjct: 88 LKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYY 147
Query: 127 Q----------------AGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEF-IGP 163
+ G G E+ GEI +P KK+T+VH G++L+
Sbjct: 148 KDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKLVSSKTNN 207
Query: 164 KAGDKTRDWLISKKVDVKLGERVNL-DSVSE------------GSDTYLTSTGDTINADC 210
K + + + + V V L +R+ + D + + TY T G +I +D
Sbjct: 208 KFNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSIESDF 267
Query: 211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
G + S+ K T + ++ G + V+++ +V+G NIFAIGDITD
Sbjct: 268 VIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAIGDITD 317
>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum
GN=aifB PE=3 SV=1
Length = 387
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 50/295 (16%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
KRV++IGGG G VAK L +VT+++ K+ F + S+RA+VEP K+ I +
Sbjct: 6 KRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKL 65
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQY 126
L NG+ + I I+ +G+ + +DYLVIATG P K+ +E LN +
Sbjct: 66 LKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYF 125
Query: 127 Q----------------AGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 164
Q G EL EI +P KK+T+VH GS+L + PK
Sbjct: 126 QNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VNPK 182
Query: 165 AGDKTRD----WLISKKVDVKLGERVNL-------------DSVSEGSDTYLTSTGDTIN 207
DK + + + V+V L +R+ + ++ S Y T G I
Sbjct: 183 MNDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQ 242
Query: 208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
AD G S+ + + ++ G L V+ + +V+G N+FAIGD TD
Sbjct: 243 ADLIIWTVGIKTNSESYQSH-FSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDF 296
>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1
Length = 374
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 124/262 (47%), Gaps = 37/262 (14%)
Query: 34 FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN----GRIVASPAINITE 89
F L+D K+ F A+LRA VE F +++ I++ D + G++V IN+
Sbjct: 32 FGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQT 88
Query: 90 NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
V+ + + +L+IATG P P E +++ QA
Sbjct: 89 QLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVG 148
Query: 129 -GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 186
G GVE+A E+ D+PEK+VTL+H L + + P ++ L+ K V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKV 208
Query: 187 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
NLD V+ E + L + +N D C G V S + + L D + G L+
Sbjct: 209 TNLDQVTPNVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLI 267
Query: 241 VDENLRVKGQKNIFAIGDITDI 262
V++ L+V+G +N++A+GD I
Sbjct: 268 VNDYLQVQGHENVYAVGDCAYI 289
>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2
SV=1
Length = 374
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 37/262 (14%)
Query: 34 FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAINITE 89
F L+D K+ F A+LRA VE F +++ I++ D + G++V IN+
Sbjct: 32 FGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQT 88
Query: 90 NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
V+ + + +L+IATG P P +++ QA
Sbjct: 89 QRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVG 148
Query: 129 -GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 186
G GVE+A E+ D+PEK+VTLVH L + + PK ++ L+SK V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKV 208
Query: 187 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
NLD V+ E + L + + D CTG + S D L G L+
Sbjct: 209 TNLDQVTSNVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALI 267
Query: 241 VDENLRVKGQKNIFAIGDITDI 262
V++ L+V+G N++A+GD I
Sbjct: 268 VNDYLQVQGHANVYAVGDCAYI 289
>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1
Length = 373
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 36/256 (14%)
Query: 40 LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
L+D K+ F A+LRA VE F K++ I+++ D G +V I++ VL
Sbjct: 39 LVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQ 95
Query: 96 EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----------------------GPTGV 133
G + + +L++ATG P P E +Q A G GV
Sbjct: 96 GGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGV 155
Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 191
E+A EI ++PEK+VTL+H L + + P + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVSNLEEL 215
Query: 192 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
Y+ T G + + LCTG + S + + L + G L V+E+L+V
Sbjct: 216 PLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQV 274
Query: 248 KGQKNIFAIGDITDIR 263
+G N++AIGD D+R
Sbjct: 275 EGHSNVYAIGDCADVR 290
>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2
SV=1
Length = 373
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 36/256 (14%)
Query: 40 LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
L+D ++ F A+LRA VE F K++ I+++ D G++VA I+ +V+ +
Sbjct: 38 LVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLS 94
Query: 96 EGRRVVYDYLVIATGHKDPVPKT----------------------RTERLNQYQAGPTGV 133
+G + Y +L++ATG P P +++R+ G GV
Sbjct: 95 DGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGV 154
Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV----NL 188
E+A EI ++P K++ L+H + L + + P ++ L+ K V + L E+V NL
Sbjct: 155 EMAAEIKTEYPGKEIILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEKVSDIENL 214
Query: 189 DSVSEGSDTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
D + T G + D LCTG + S D + + G L V+++L++
Sbjct: 215 RPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQL 273
Query: 248 KGQKNIFAIGDITDIR 263
+G +NI+AIGD D++
Sbjct: 274 EGYENIYAIGDCADLK 289
>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1
Length = 373
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 30/253 (11%)
Query: 40 LIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINITENEVLTAEGR 98
L+D K+ F A+LRA VE F K++ I+++ + N R I++ VL +G+
Sbjct: 39 LVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQ 98
Query: 99 RVVYDYLVIATG---------------------HKDPVPKT-RTERLNQYQAGPTGVELA 136
+ + +L++ATG ++D V + R++ + G GVE+A
Sbjct: 99 ALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMA 158
Query: 137 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDS--VS 192
EI ++PEK+VTL+H L + + P + ++ L+ K V + L ERV NL++ V+
Sbjct: 159 AEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPVN 218
Query: 193 EGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 250
E + T G ++A+ +C G + S + + D L ++G L V+E L+V+G
Sbjct: 219 ERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYLQVEGY 277
Query: 251 KNIFAIGDITDIR 263
+I+AIGD D+R
Sbjct: 278 SHIYAIGDCADVR 290
>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1
Length = 373
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 36/256 (14%)
Query: 40 LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
L+D K+ F A+LRA VE F K++ I+++ D G+++ I++ VL
Sbjct: 39 LVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQ 95
Query: 96 EGRRVVYDYLVIATGHKDPVPK----------------------TRTERLNQYQAGPTGV 133
G + + +L++ATG P P R++ + G GV
Sbjct: 96 GGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGV 155
Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 191
E+A EI ++PEK+VTL+H L + + P + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVSNLEEL 215
Query: 192 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
Y+ T G + + +C G + S + + + L ++G L V+E L+V
Sbjct: 216 PRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYR-SAFESRLASNGALKVNEFLQV 274
Query: 248 KGQKNIFAIGDITDIR 263
+G NI+AIGD D +
Sbjct: 275 EGYSNIYAIGDCADTK 290
>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1
Length = 378
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 67/274 (24%)
Query: 38 VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINITENEVLTAE 96
+ L+ Y +++R V + K S++ + L +G ++ A + + EV+
Sbjct: 34 IKLVTASNYVYFLPSAVRLTVSKDYTK-SILPLKNVLDSGIEVIKDTAASFDDKEVVLGS 92
Query: 97 GRRVVYDYLVIATGHK--DPVPKTRT--ERLNQY-----------------QAGPTGVEL 135
R + +D LV+ATG K DP+ T T + +Y G EL
Sbjct: 93 DRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCEL 152
Query: 136 AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAG---DKTR----DWLISKKVDVKL 182
AGE+ + E K+++++H +LL P +G D R D+L + + L
Sbjct: 153 AGELLFKYLEEIRSGKKRISIIHNSDKLL----PDSGLYNDTLRKNVTDYLSKNGITLYL 208
Query: 183 GE-RVNLDS------VSEGSDTYLTSTGDTINADCHFLCTG----KPVGSDWLKDTILKD 231
+LD+ + EGS Y I+AD + G PV S + D
Sbjct: 209 NTVGASLDTSPKRIFLGEGSSKY-------IDADLIYRGVGISPNVPVNS-------ISD 254
Query: 232 SLDTHGMLMVDENLRVKGQK--NIFAIGDITDIR 263
D G + V++N RVK + N+FAIGD+T+ R
Sbjct: 255 LCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNFR 288
>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana
GN=NDB2 PE=1 SV=1
Length = 582
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEIT---------WASLRAMVEP- 60
K K+VV++G G AG+ K+L S +V +I P+ YF T R++VEP
Sbjct: 57 KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116
Query: 61 -SFGKRSVINHTDYLVNGRIVASPA---INITENEVLTAEGRR---VVYDYLVIATG--- 110
+ G+++V T YL PA + + L++ G++ V YDYLVIATG
Sbjct: 117 RNIGRKNV--DTSYLEAECFKIDPASKKVYCRSKQGLSSNGKKEFSVDYDYLVIATGAQS 174
Query: 111 --------------------------------HKDPVP------KTRTERLNQYQAGPTG 132
K +P + R GPTG
Sbjct: 175 NTFNIPGVEENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGPTG 234
Query: 133 VELAGEIAVDF---------PEKK----VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 179
VE A E+ DF P K +TL+ +L + + + +D
Sbjct: 235 VEFAAELH-DFVTEDLVSLYPRAKGSVRITLLEAADHILTMFDKRITEFAEEKFSRDGID 293
Query: 180 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGM 238
VKLG V V+E + T G+ + + +G+ +KD + +
Sbjct: 294 VKLGSMVT--KVNEKDISAKTKGGEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRA 351
Query: 239 LMVDENLRVKGQKNIFAIGDITDI 262
L DE LRV+G NI+A+GD I
Sbjct: 352 LATDEWLRVEGTDNIYALGDCATI 375
>sp|P48639|GSHR_BURCE Glutathione reductase OS=Burkholderia cepacia GN=gor PE=3 SV=1
Length = 449
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 93 LTAEGRRVVYDYLVIATGHKDPVPKTRTERLN-------QYQAGPTGVEL--AGEIAVDF 143
+T G V ++IATG + +P L GP + + G IA +F
Sbjct: 123 VTVTGASVSARTILIATGARPVMPPVAGANLMITSDDVFDLPVGPPRIAIIGGGYIACEF 182
Query: 144 PE------KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 197
+ V +H+GS++L + + D L +D++LG V G+ +
Sbjct: 183 AGIFNGLGRHVVQLHRGSQVLRGFDDELREHLGDELKKSGIDLRLGVDVVAVERQRGALS 242
Query: 198 YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 257
+TGD + D TG+ + L + LD +G + VDE R I+A+G
Sbjct: 243 VQLTTGDAMEVDAVMAATGRLPNTWGLGLETVDVGLDQNGAIKVDEYSRTS-SPGIYAVG 301
Query: 258 DITD 261
D+T+
Sbjct: 302 DVTN 305
>sp|Q8GXR9|DHNA_ARATH NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NDC1 PE=1 SV=2
Length = 519
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 126/344 (36%), Gaps = 81/344 (23%)
Query: 4 RRQQQSEGKNKRVVVIGGGVAG---SLVAKSLQFSAD----VTLIDPKEYF---EITWAS 53
R + K RV ++GGG G +L +SL + D V L+D E F + +
Sbjct: 71 RTYSWPDNKRPRVCILGGGFGGLYTALRLESLVWPEDKKPQVVLVDQSERFVFKPMLYEL 130
Query: 54 LRAMVE-----PSFG-------------KRSVINHTDYL-VNGRIVASPAINITENEVLT 94
L V+ P F + + D+L VNG I++T VL
Sbjct: 131 LSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLLPCDHLGVNGS-----EISVTGGTVLL 185
Query: 95 AEGRRVVYDYLVIATGHK---DPVPKTR---------------TERLNQYQ--------- 127
G ++ YD+LV+A G + D VP E+L++ +
Sbjct: 186 ESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIRVNEKLSKLERKNFKDGSA 245
Query: 128 -------AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG-DKTRDWLISKKVD 179
G GVELA I+ ++ + S+ + P + L S+KV
Sbjct: 246 IKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNILTSAPDGNREAAMKVLTSRKVQ 305
Query: 180 VKLG---ERVNLDSVSEGSDTYLTST--------GDTINADCHFLCTG-KPVGSDWLKDT 227
+ LG + + S E + Y I AD G KP+ +
Sbjct: 306 LLLGYLVQSIKRASNLEEDEGYFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSG 365
Query: 228 ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFP 271
L+ G DE LRVKG IFA+GD + +R S I P
Sbjct: 366 PNVLPLNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKILP 409
>sp|B2VGA0|STHA_ERWT9 Soluble pyridine nucleotide transhydrogenase OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=sthA PE=3
SV=1
Length = 466
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 126 YQAGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 182
Y AG G E A +AV KV L++ RLL F+ + D + V ++
Sbjct: 182 YGAGVIGCEYASIFRGLAV-----KVDLINTRDRLLAFLDQEMSDSLSYHFWNNGVVIRH 236
Query: 183 GERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 241
E ++ V++G +L S G + ADC G+ +D L + D G+L V
Sbjct: 237 NEEFEKVEGVADGVIMHLKS-GKKLKADCLLYANGRTGNTDSLSLENVGLEADGRGLLKV 295
Query: 242 DENLRVKGQKNIFAIGDITDIRVSASMIFPQ 272
+ ++ Q NI+A+GD+ AS + Q
Sbjct: 296 N-SMYQTAQPNIYAVGDVIGYPSLASAAYDQ 325
>sp|P57112|STHA_PSEAE Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=sthA PE=1 SV=2
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
Query: 91 EVLTAEG--RRVVYDYLVIATGHKDPVPK-------------------TRTERLNQYQAG 129
EV+T G R+V D VIATG + P RL Y AG
Sbjct: 125 EVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184
Query: 130 PTGVELAG-----EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 184
G E A + VD L+ +LL F+ + D L + V ++ E
Sbjct: 185 VIGCEYASIFSGLGVLVD-------LIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNE 237
Query: 185 RVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
++ + G +L S G I AD C G+ +D L + +++ G + VDE
Sbjct: 238 EYERVEGLDNGVILHLKS-GKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDE 296
Query: 244 NLRVKGQKNIFAIGDITDIRVSASMIFPQ 272
N R NIFA GD+ AS + Q
Sbjct: 297 NYRTS-VSNIFAAGDVIGWPSLASAAYDQ 324
>sp|Q02PF5|STHA_PSEAB Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=sthA PE=3 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
Query: 91 EVLTAEG--RRVVYDYLVIATGHKDPVPK-------------------TRTERLNQYQAG 129
EV+T G R+V D VIATG + P RL Y AG
Sbjct: 125 EVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184
Query: 130 PTGVELAG-----EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 184
G E A + VD L+ +LL F+ + D L + V ++ E
Sbjct: 185 VIGCEYASIFSGLGVLVD-------LIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNE 237
Query: 185 RVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
++ + G +L S G I AD C G+ +D L + +++ G + VDE
Sbjct: 238 EYERVEGLDNGVILHLKS-GKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDE 296
Query: 244 NLRVKGQKNIFAIGDITDIRVSASMIFPQ 272
N R NIFA GD+ AS + Q
Sbjct: 297 NYRTS-VSNIFAAGDVIGWPSLASAAYDQ 324
>sp|B7UZU5|STHA_PSEA8 Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
aeruginosa (strain LESB58) GN=sthA PE=3 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
Query: 91 EVLTAEG--RRVVYDYLVIATGHKDPVPK-------------------TRTERLNQYQAG 129
EV+T G R+V D VIATG + P RL Y AG
Sbjct: 125 EVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184
Query: 130 PTGVELAG-----EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 184
G E A + VD L+ +LL F+ + D L + V ++ E
Sbjct: 185 VIGCEYASIFSGLGVLVD-------LIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNE 237
Query: 185 RVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
++ + G +L S G I AD C G+ +D L + +++ G + VDE
Sbjct: 238 EYERVEGLDNGVILHLKS-GKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDE 296
Query: 244 NLRVKGQKNIFAIGDITDIRVSASMIFPQ 272
N R NIFA GD+ AS + Q
Sbjct: 297 NYRTS-VSNIFAAGDVIGWPSLASAAYDQ 324
>sp|P66006|STHA_MYCTU Probable soluble pyridine nucleotide transhydrogenase
OS=Mycobacterium tuberculosis GN=sthA PE=3 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 49 ITWASLRAMVEPSFGKRSVI-------NHTDYLV-NGRIVASPAINITENEVLTAEGRRV 100
IT A L A + GK + N D +V +GR + P + E++ E V
Sbjct: 79 ITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFI-DPHTILVEDQA-RREKTTV 136
Query: 101 VYDYLVIATGHKDPVP-------------------KTRTERLNQYQAGPTGVELAGEIAV 141
DY++IATG + P K+ + AG G+E A A
Sbjct: 137 TGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAA 196
Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLT 200
KVT+V K +L+F P+ + + L V + GE V +D S G+ T L
Sbjct: 197 --LGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLA 254
Query: 201 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
S G I A+ G+ +D L + G + VD+ + K +I+A+GD+
Sbjct: 255 S-GKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRGRIFVDDRFQTK-VDHIYAVGDV 311
>sp|A5U665|STHA_MYCTA Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=sthA PE=3
SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 49 ITWASLRAMVEPSFGKRSVI-------NHTDYLV-NGRIVASPAINITENEVLTAEGRRV 100
IT A L A + GK + N D +V +GR + P + E++ E V
Sbjct: 79 ITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFI-DPHTILVEDQA-RREKTTV 136
Query: 101 VYDYLVIATGHKDPVP-------------------KTRTERLNQYQAGPTGVELAGEIAV 141
DY++IATG + P K+ + AG G+E A A
Sbjct: 137 TGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAA 196
Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLT 200
KVT+V K +L+F P+ + + L V + GE V +D S G+ T L
Sbjct: 197 --LGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLA 254
Query: 201 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
S G I A+ G+ +D L + G + VD+ + K +I+A+GD+
Sbjct: 255 S-GKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRGRIFVDDRFQTK-VDHIYAVGDV 311
>sp|C1AFH2|STHA_MYCBT Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=sthA
PE=3 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 49 ITWASLRAMVEPSFGKRSVI-------NHTDYLV-NGRIVASPAINITENEVLTAEGRRV 100
IT A L A + GK + N D +V +GR + P + E++ E V
Sbjct: 79 ITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFI-DPHTILVEDQA-RREKTTV 136
Query: 101 VYDYLVIATGHKDPVP-------------------KTRTERLNQYQAGPTGVELAGEIAV 141
DY++IATG + P K+ + AG G+E A A
Sbjct: 137 TGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAA 196
Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLT 200
KVT+V K +L+F P+ + + L V + GE V +D S G+ T L
Sbjct: 197 --LGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLA 254
Query: 201 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
S G I A+ G+ +D L + G + VD+ + K +I+A+GD+
Sbjct: 255 S-GKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRGRIFVDDRFQTK-VDHIYAVGDV 311
>sp|A1KM51|STHA_MYCBP Soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=sthA PE=3 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 49 ITWASLRAMVEPSFGKRSVI-------NHTDYLV-NGRIVASPAINITENEVLTAEGRRV 100
IT A L A + GK + N D +V +GR + P + E++ E V
Sbjct: 79 ITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFI-DPHTILVEDQA-RREKTTV 136
Query: 101 VYDYLVIATGHKDPVP-------------------KTRTERLNQYQAGPTGVELAGEIAV 141
DY++IATG + P K+ + AG G+E A A
Sbjct: 137 TGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAA 196
Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLT 200
KVT+V K +L+F P+ + + L V + GE V +D S G+ T L
Sbjct: 197 --LGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLA 254
Query: 201 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
S G I A+ G+ +D L + G + VD+ + K +I+A+GD+
Sbjct: 255 S-GKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRGRIFVDDRFQTK-VDHIYAVGDV 311
>sp|P66007|STHA_MYCBO Probable soluble pyridine nucleotide transhydrogenase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=sthA PE=3 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 49 ITWASLRAMVEPSFGKRSVI-------NHTDYLV-NGRIVASPAINITENEVLTAEGRRV 100
IT A L A + GK + N D +V +GR + P + E++ E V
Sbjct: 79 ITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFI-DPHTILVEDQA-RREKTTV 136
Query: 101 VYDYLVIATGHKDPVP-------------------KTRTERLNQYQAGPTGVELAGEIAV 141
DY++IATG + P K+ + AG G+E A A
Sbjct: 137 TGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAGVIGIEYASMFAA 196
Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLT 200
KVT+V K +L+F P+ + + L V + GE V +D S G+ T L
Sbjct: 197 --LGTKVTVVEKRDNMLDFCDPEVVEALKFHLRDLAVTFRFGEEVTAVDVGSAGTVTTLA 254
Query: 201 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 259
S G I A+ G+ +D L + G + VD+ + K +I+A+GD+
Sbjct: 255 S-GKQIPAETVMYSAGRQGQTDHLDLHNAGLEVQGRGRIFVDDRFQTK-VDHIYAVGDV 311
>sp|A6V3A6|STHA_PSEA7 Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
aeruginosa (strain PA7) GN=sthA PE=3 SV=1
Length = 464
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
Query: 91 EVLTAEG--RRVVYDYLVIATGHKDPVPK-------------------TRTERLNQYQAG 129
EV+T G R+V D VIATG + P RL Y AG
Sbjct: 125 EVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184
Query: 130 PTGVELAG-----EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 184
G E A + VD L+ +LL F+ + D L + V ++ E
Sbjct: 185 VIGCEYASIFSGLGVLVD-------LIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNE 237
Query: 185 RVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
++ + G +L S G I AD C G+ +D L + +++ G + VDE
Sbjct: 238 EYERVEGLDNGVILHLKS-GKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQVEVDE 296
Query: 244 NLRVKGQKNIFAIGDITDIRVSASMIFPQ 272
N R NIFA GD+ AS + Q
Sbjct: 297 NYRTS-VSNIFAAGDVIGWPSLASAAYDQ 324
>sp|Q48A14|STHA_COLP3 Soluble pyridine nucleotide transhydrogenase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=sthA PE=3
SV=1
Length = 466
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 147 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 206
KV L++ RLL F+ + D L + V ++ GE + SE + +G +
Sbjct: 201 KVDLINTRERLLSFLDTEMSDSLSYHLWNSGVVIRHGEEIERVESSEDAVIVHLKSGKKM 260
Query: 207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266
ADC G+ + L D G L V++ + + NIFA+GD+ A
Sbjct: 261 RADCLLFANGRTGNTADLNLAAAGLKADGRGQLKVNDCYQTE-VDNIFAVGDVIGYPSLA 319
Query: 267 SMIFPQ 272
S F Q
Sbjct: 320 SAAFDQ 325
>sp|P23189|GSHR_PSEAE Glutathione reductase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=gor PE=3 SV=1
Length = 451
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 137 GEIAVDFPE------KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLD 189
G IAV+F + TL+++ L + RD L K +D++ + +D
Sbjct: 175 GYIAVEFASIFNGLGAETTLLYRRDLFLRGFDRSVREHLRDELGKKGLDLQFNSDIARID 234
Query: 190 SVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENLRV 247
++GS G + ADC F TG +P+ D L++T +K L G + VDE+ +
Sbjct: 235 KQADGSLAATLKDGRVLEADCVFYATGRRPMLDDLGLENTAVK--LTDKGFIAVDEHYQT 292
Query: 248 KGQKNIFAIGDI 259
+ +I A+GD+
Sbjct: 293 S-EPSILALGDV 303
>sp|A4XSQ1|STHA_PSEMY Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
mendocina (strain ymp) GN=sthA PE=3 SV=1
Length = 464
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 122 RLNQYQAGPTGVELAG-----EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 176
RL Y AG G E A + VD L+ +LL F+ + D L +
Sbjct: 177 RLIIYGAGVIGCEYASIFSGLGVLVD-------LIDNRDQLLSFLDSEISDALSYHLRNN 229
Query: 177 KVDVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 235
V ++ E ++ V G +L S G I AD C G+ +D L + ++++
Sbjct: 230 NVLIRHNEEYERIEGVENGVVLHLKS-GKKIKADALLWCNGRTGNTDQLGLENIGIAVNS 288
Query: 236 HGMLMVDENLRVKGQKNIFAIGDI 259
G + VDE+ R + NI+A GD+
Sbjct: 289 RGQIQVDEHYRTE-VSNIYAAGDV 311
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum
GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 127/331 (38%), Gaps = 85/331 (25%)
Query: 4 RRQQQSEG-KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT---------WA 52
RRQ++ + +N++++++G G K+L D+T+I P+ +F T
Sbjct: 29 RRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTL 88
Query: 53 SLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL------TAEGRRVVYDYLV 106
R++ EP R IN Y+ + +IN N VL + + YD LV
Sbjct: 89 EFRSIAEPVRTTRD-INEFKYIQ----ASVTSINPENNSVLVKSTFHNEKPFEMKYDKLV 143
Query: 107 IATGHKD-----------------------------------PVPKTRTE---RLNQY-- 126
I G ++ +P TE RL +
Sbjct: 144 IGVGSRNNTFGIKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVI 203
Query: 127 -QAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV----DVK 181
G TG+E E+ F E SRL F+ P K S K+ D K
Sbjct: 204 VGGGATGIEFTSELNDFFSEDL-------SRLFPFV-PVNEVKIILLEASGKILSTFDQK 255
Query: 182 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL-------KDTILKDSL- 233
L ++ ++ + G D S+ + D L G + L + ++K+S
Sbjct: 256 LVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIPYGLLVWSTGIGQHPLVKNSSF 315
Query: 234 --DTHGMLMVDENLRVKGQKNIFAIGDITDI 262
D+H ++VD++LRVK N+F+ GD ++
Sbjct: 316 EKDSHDRIIVDDHLRVKNYSNVFSFGDCANV 346
>sp|O32117|YUTJ_BACSU NADH dehydrogenase-like protein YutJ OS=Bacillus subtilis (strain
168) GN=yutJ PE=3 SV=2
Length = 355
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 53/293 (18%)
Query: 14 KRVVVIGGG-----VAGSLVAKSLQFSADVTLID--PKEYFEITWASLRA-MVEPSFGKR 65
K++V+IGGG V L+ L +TLID P + + +L A + +
Sbjct: 2 KKLVLIGGGYGNMRVLHRLLPNQLPDDVSITLIDRNPYHCLKTEYYALAAGTISDHHIRV 61
Query: 66 SVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP---VP------ 116
S H V + S I+I + +VL + + YD +I G +D VP
Sbjct: 62 SFPEHPRLDVQYGDITS--IDIVQKQVLFQDREPISYDDAIIGLGCEDKYHNVPGAPEFT 119
Query: 117 ---------KTRTERLNQYQA---------GPTGVELAGEIAVDFPEKKVTLVHKGSRLL 158
+ ++LN A G +GVELA E+ + + L +G+ +L
Sbjct: 120 YSIQTIDQSRETYQKLNNLSANATVAIVGAGLSGVELASELRESRDDLNIILFDRGNLIL 179
Query: 159 EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-K 217
+ + W ++ V++ R N+ V EG + + D I+AD G +
Sbjct: 180 SSFPERLSKYVQKWF--EEHGVRIINRANITKVEEG---VVYNHDDPISADAIVWTAGIQ 234
Query: 218 PVGSDWLKDTILKD---SLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 267
P + +++D D G +++ + + G ++++ +GD + + S
Sbjct: 235 P-------NKVVRDLDVEKDAQGRIVLTPHHNLPGDEHLYVVGDCASLPHAPS 280
>sp|B5FG80|NORW_VIBFM Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio fischeri
(strain MJ11) GN=norW PE=3 SV=1
Length = 381
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 53/211 (25%)
Query: 89 ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQA----------- 128
E + +TA G + YD LV+ATG VP + L ++ A
Sbjct: 87 EQQTITANGEQYTYDKLVLATGSHTFVPPFHGDGCEDILTLNSLKEFSAIQQKILDAKNI 146
Query: 129 -----GPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTRDWLISKKV 178
G G ELA ++A K VTLV S LL +FI + ++ K V
Sbjct: 147 LVIGGGLIGTELAMDLA--NAGKMVTLVEPNSHLLANMMPDFISLPLENACKE----KGV 200
Query: 179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 238
V L + V +V++ Y +T ++CH + + LK L T
Sbjct: 201 TVNLSDCV--QAVNKQEQGYRVTT-----SNCHSYYVDCVISAAGLKP---NTQLATEAN 250
Query: 239 LM------VDENLRVKGQKNIFAIGDITDIR 263
LM VD NL+ NI+A+GD +I
Sbjct: 251 LMVNRGIVVDSNLQTSA-NNIYALGDCAEIE 280
>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana
GN=NDB3 PE=2 SV=1
Length = 580
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 123/329 (37%), Gaps = 79/329 (24%)
Query: 8 QSEGKNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEIT---------WASLRAM 57
+++ + ++VV++G G AG+ K+L S+ +V +I P+ YF T R++
Sbjct: 50 ETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGTVEARSV 109
Query: 58 VEPSFGKRSVINHTDYLVNGRIV----ASPAINITENEVLTAEGRR---VVYDYLVIATG 110
VEP N + S + + + ++G++ V YDYLVIATG
Sbjct: 110 VEPIRNIARKQNVEMSFLEAECFKIDPGSKKVYCRSKQGVNSKGKKEFDVDYDYLVIATG 169
Query: 111 HK------------------------------DPVPKTRTERLNQYQ-----------AG 129
+ D K LN+ + G
Sbjct: 170 AQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRMLHFVVVGGG 229
Query: 130 PTGVELAGEIAVDF---------PEKK----VTLVHKGSRLLEFIGPKAGDKTRDWLISK 176
PTGVE A E+ DF P+ K +TL+ +L + + +
Sbjct: 230 PTGVEFASELH-DFVNEDLVKLYPKAKNLVQITLLEAADHILTMFDKRITEFAEEKFTRD 288
Query: 177 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG---KPVGSDWLKDTILKDSL 233
+DVKLG V + E S TI TG +PV D++K
Sbjct: 289 GIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTGIGTRPVIKDFMKQI----GQ 344
Query: 234 DTHGMLMVDENLRVKGQKNIFAIGDITDI 262
L DE LRV+G NI+A+GD I
Sbjct: 345 GNRRALATDEWLRVEGCDNIYALGDCATI 373
>sp|Q8D4F7|NORW_VIBVU Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio vulnificus
(strain CMCP6) GN=norW PE=3 SV=1
Length = 382
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 37/204 (18%)
Query: 87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQA--------- 128
+T+ + + A GR Y LV ATG + VP R + L +YQA
Sbjct: 85 LTQQQQVVANGRCYPYSKLVFATGAQAFVPPMRGDGLAKVMTLNSLQEYQAAEQPLSRAQ 144
Query: 129 -------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK-AGDKTRDWLISKKVDV 180
G GVE+A ++A K+VT+V +RLL + P+ L+ + +
Sbjct: 145 HVLVIGGGLIGVEIALDLATS--GKQVTVVEPNARLLANLLPEFIALPLEQQLMKHGIQL 202
Query: 181 KLGERVNLDSVSEGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 238
L RV +SV+E T + G D G + ++ L
Sbjct: 203 ALNSRV--ESVTEQGQTLAIALHDGREFAVDAVLCAAGLKANTAVAREA----GLSVERG 256
Query: 239 LMVDENLRVKGQKNIFAIGDITDI 262
+ VD L +I+A+GD I
Sbjct: 257 ICVDHQLNTS-DPHIYALGDCAQI 279
>sp|Q6LLT9|STHA_PHOPR Soluble pyridine nucleotide transhydrogenase OS=Photobacterium
profundum GN=sthA PE=3 SV=1
Length = 469
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 147 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 206
KV L++ RLLEF+ + D L + ++ GE ++ S +G +
Sbjct: 204 KVDLINTRHRLLEFLDNEISDSLSYHLWNSGAMIRNGETFEKIEGTDDSIILHLESGKKM 263
Query: 207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266
ADC G+ +D L + + D+ G L V++N +++A+GD+ A
Sbjct: 264 RADCLLYANGRTGNTDKLNLNKVGLTPDSRGQLAVNQNY-CTDVDHVYAVGDVIGYPSLA 322
Query: 267 SMIFPQ 272
S + Q
Sbjct: 323 SAAYDQ 328
>sp|Q8NXG0|Y823_STAAW NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus
(strain MW2) GN=MW0823 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q6GAY5|Y811_STAAS NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0811 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q5HHE4|Y944_STAAC NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus
(strain COL) GN=SACOL0944 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q99VE0|Y941_STAAM NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0941 PE=1 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q6GIE7|Y903_STAAR NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0903 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q2FZV7|Y878_STAA8 NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q2FID4|Y844_STAA3 NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q7A6J4|Y802_STAAN NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus
(strain N315) GN=SA0802 PE=1 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q2YWP9|Y807_STAAB NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1
Length = 402
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 84/315 (26%)
Query: 14 KRVVVIGGGVAGSLVAKSLQFS-----ADVTLIDPKEY-FEITWASLRAMVEPSFGKRSV 67
K+V+V+G G AG LQ + A++TLI+ EY +E TW + E S G
Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKTISTEEAEITLINKNEYHYEATW-----LHEASAG---T 57
Query: 68 INHTDYLVN-GRIVASPAINITENEVL-------TAEGRRVVYDY--LVIATG------- 110
+N+ D L ++ +N + EV E + +YD+ LV+A G
Sbjct: 58 LNYEDVLYPVESVLKKDKVNFVQAEVTKIDRDAKKVETNQGIYDFDILVVALGFVSETFG 117
Query: 111 ------HKDPVPKTRTER---------LNQYQ----------------AGPTGVELAGEI 139
H + T R Y AG TGVE GE+
Sbjct: 118 IEGMKDHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGEL 177
Query: 140 AVDFPEK-----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
PE K+T V ++L + + +L + V+ K+ +
Sbjct: 178 TDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPI-- 235
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLD--THGMLMVDENL 245
V+ ++ ++ + L G V + ++ + ++++S + G ++ ++L
Sbjct: 236 --VACNEKGFVVE----VDGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDL 289
Query: 246 RVKGQKNIFAIGDIT 260
+ G NIF IGD +
Sbjct: 290 TINGYDNIFVIGDCS 304
>sp|Q3K9F5|STHA_PSEPF Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas
fluorescens (strain Pf0-1) GN=sthA PE=3 SV=1
Length = 464
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 26/191 (13%)
Query: 91 EVLTAEG--RRVVYDYLVIATGHKDPVPK-------------------TRTERLNQYQAG 129
EV+ A G ++V +++IATG + P +L Y AG
Sbjct: 125 EVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIVYGAG 184
Query: 130 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-L 188
G E A + V LV +LL F+ + + + V+ E + +
Sbjct: 185 VIGCEYASIFS--GLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYDRV 242
Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 248
+ V G +L S G I AD C G+ +D L + +++ G + VDEN R
Sbjct: 243 EGVDNGVILHLKS-GKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRTC 301
Query: 249 GQKNIFAIGDI 259
Q NI+ GD+
Sbjct: 302 VQ-NIYGAGDV 311
>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana
GN=NDB1 PE=1 SV=1
Length = 571
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 120/327 (36%), Gaps = 90/327 (27%)
Query: 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
VVV+G G AG K L S DV ++ P+ YF T L ++ + RS++ +
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFT-PLLPSVTCGTVEARSIVESVRNI 110
Query: 75 --------------------VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-- 112
VN ++ P + +++ ++ + YDYL++A G +
Sbjct: 111 TKKKNGEIELWEADCFKIDHVNQKVHCRP---VFKDDPEASQEFSLGYDYLIVAVGAQVN 167
Query: 113 ----------------------------DPVPKTRTERLNQYQ-----------AGPTGV 133
D K L + Q GPTGV
Sbjct: 168 TFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTGV 227
Query: 134 ELAGE--------IAVDFPEKK----VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 181
E A E I +P K +TL+ G +L + +DV+
Sbjct: 228 EFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQ 287
Query: 182 LGERVNLDSVSEGSDTY-LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM-- 238
G RV SV++ T + S+G+ ++ + VG+ ++ D ++ G
Sbjct: 288 TGMRVM--SVTDKDITVKVKSSGELVSIPHGLILWSTGVGTR----PVISDFMEQVGQGG 341
Query: 239 ---LMVDENLRVKGQKNIFAIGDITDI 262
+ +E L+V G +N++A+GD I
Sbjct: 342 RRAVATNEWLQVTGCENVYAVGDCASI 368
>sp|O07220|Y1812_MYCTU NADH dehydrogenase-like protein Rv1812c/MT1860 OS=Mycobacterium
tuberculosis GN=Rv1812c PE=2 SV=1
Length = 400
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGH---KDPVPKTR-----------TERLNQYQAG 129
AI+ V T+ G YD LV+A+G K +P RL Q+ G
Sbjct: 81 AIDADGRRVTTSTGASYSYDRLVLASGSHVVKPALPGLAEFGFDVDTYDGAVRLQQHLQG 140
Query: 130 PTGVELAG---------------EIAVDFPEKKVTLVHKGSRLLE---------FIGPKA 165
G L E A + P + L +G + F+G
Sbjct: 141 LAGGPLTSAAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPRVVLIDHNPFVGSDM 200
Query: 166 GDKTR----DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221
G R L+ V+ + G V++ +VS G T S+G+ + A C G
Sbjct: 201 GLSARPVIEQALLDNGVETRTG--VSVAAVSPGGVTL--SSGERLAAATVVWCAGMRASR 256
Query: 222 DWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264
+ + +D L G L VD+ LRV G +FA GD+ R+
Sbjct: 257 LTEQLPVARDRL---GRLQVDDYLRVIGVPAMFAAGDVAAARM 296
>sp|Q7MFY7|NORW_VIBVY Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio vulnificus
(strain YJ016) GN=norW PE=3 SV=1
Length = 382
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 33/202 (16%)
Query: 87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQA--------- 128
+T+ + + A GR Y LV ATG + VP R + L +YQA
Sbjct: 85 LTQQQQVVANGRCYPYSKLVFATGAQAFVPPMRGDGLAKVMTLNSLQEYQAAEQPLSRAQ 144
Query: 129 -------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK-AGDKTRDWLISKKVDV 180
G GVE+A ++A K+VT+V +RLL + P+ L+ + +
Sbjct: 145 HVLVIGGGLIGVEIALDLATS--GKQVTVVEPNARLLANLLPEFIALPLEQQLMKHGIQL 202
Query: 181 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
L RV +V + G D G + ++ L +
Sbjct: 203 ALNSRVESVTVQGQTLAIALHDGREFAVDAVLCAAGLKANTAVAREA----GLSVERGIC 258
Query: 241 VDENLRVKGQKNIFAIGDITDI 262
VD L +I+A+GD I
Sbjct: 259 VDLQLNTS-DPHIYALGDCAQI 279
>sp|P69653|RR4_TRIDA 30S ribosomal protein S4, chloroplastic (Fragment) OS=Tripsacum
dactyloides GN=rps4 PE=3 SV=1
Length = 196
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
>sp|P69631|RR4_BOTIS 30S ribosomal protein S4, chloroplastic (Fragment) OS=Bothriochloa
ischaemum GN=rps4 PE=3 SV=1
Length = 196
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
>sp|A1E9S6|RR4_SORBI 30S ribosomal protein S4, chloroplastic OS=Sorghum bicolor GN=rps4
PE=3 SV=1
Length = 201
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
>sp|Q6ENW1|RR4_SACOF 30S ribosomal protein S4, chloroplastic OS=Saccharum officinarum
GN=rps4 PE=3 SV=1
Length = 201
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
>sp|Q6L397|RR4_SACHY 30S ribosomal protein S4, chloroplastic OS=Saccharum hybrid GN=rps4
PE=3 SV=1
Length = 201
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
>sp|P02355|RR4_MAIZE 30S ribosomal protein S4, chloroplastic OS=Zea mays GN=rps4 PE=3
SV=1
Length = 201
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE----GRRVVYDYLVIATGHKDPVPKT 118
G R ++NH LVNGRIV P+ +++T + +R+V +Y IA+ +PK
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNY--IASSDPGKLPKH 163
Query: 119 RTERLNQYQA 128
T QY+
Sbjct: 164 LTVDTLQYKG 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,349,332
Number of Sequences: 539616
Number of extensions: 4208133
Number of successful extensions: 14215
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 13988
Number of HSP's gapped (non-prelim): 306
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)