Query 023975
Match_columns 274
No_of_seqs 193 out of 1937
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.9E-36 8.5E-41 250.2 15.5 258 12-272 3-324 (454)
2 PRK06116 glutathione reductase 100.0 1E-35 2.2E-40 253.4 17.6 253 13-270 4-315 (450)
3 PRK05249 soluble pyridine nucl 100.0 2.8E-35 6.2E-40 251.7 19.0 256 12-270 4-322 (461)
4 PRK08010 pyridine nucleotide-d 100.0 5.9E-35 1.3E-39 248.1 18.9 256 13-272 3-306 (441)
5 PLN02507 glutathione reductase 100.0 4.6E-35 1E-39 250.6 18.4 257 12-271 24-351 (499)
6 TIGR01424 gluta_reduc_2 glutat 100.0 3.2E-35 7E-40 249.6 17.3 256 13-272 2-315 (446)
7 TIGR01421 gluta_reduc_1 glutat 100.0 7.9E-35 1.7E-39 247.0 18.8 253 13-270 2-315 (450)
8 PRK06467 dihydrolipoamide dehy 100.0 2.4E-34 5.1E-39 245.4 17.0 255 12-270 3-324 (471)
9 PRK06370 mercuric reductase; V 100.0 4.9E-34 1.1E-38 243.8 18.6 254 12-270 4-321 (463)
10 PTZ00318 NADH dehydrogenase-li 100.0 3.1E-33 6.7E-38 235.9 21.8 245 12-264 9-322 (424)
11 PRK07846 mycothione reductase; 100.0 5.6E-34 1.2E-38 241.7 17.3 254 13-272 1-314 (451)
12 PRK06416 dihydrolipoamide dehy 100.0 7E-34 1.5E-38 243.0 17.3 253 12-269 3-320 (462)
13 TIGR01423 trypano_reduc trypan 100.0 1.3E-33 2.9E-38 240.2 18.5 260 12-272 2-340 (486)
14 COG1252 Ndh NADH dehydrogenase 100.0 9.8E-33 2.1E-37 224.5 21.4 246 13-265 3-306 (405)
15 TIGR02053 MerA mercuric reduct 100.0 7.7E-34 1.7E-38 242.7 15.7 252 14-269 1-315 (463)
16 PRK07251 pyridine nucleotide-d 100.0 2.3E-33 4.9E-38 238.2 18.3 252 13-268 3-301 (438)
17 PRK14694 putative mercuric red 100.0 7.8E-33 1.7E-37 236.4 19.3 254 9-269 2-321 (468)
18 PRK14727 putative mercuric red 100.0 1.1E-32 2.3E-37 235.9 19.4 254 12-270 15-333 (479)
19 PRK13512 coenzyme A disulfide 100.0 1.2E-32 2.5E-37 233.3 19.3 240 14-262 2-281 (438)
20 TIGR03452 mycothione_red mycot 100.0 9.4E-33 2E-37 234.5 18.3 253 13-271 2-316 (452)
21 PRK13748 putative mercuric red 100.0 1.6E-32 3.5E-37 240.0 20.2 252 13-270 98-415 (561)
22 PLN02546 glutathione reductase 100.0 9.6E-33 2.1E-37 237.5 18.4 255 13-271 79-401 (558)
23 PRK07818 dihydrolipoamide dehy 100.0 6.3E-33 1.4E-37 237.0 17.2 254 13-270 4-323 (466)
24 PRK14989 nitrite reductase sub 100.0 1.3E-32 2.9E-37 246.3 19.0 248 14-266 4-289 (847)
25 PRK07845 flavoprotein disulfid 100.0 1.2E-32 2.6E-37 234.8 17.7 254 13-270 1-324 (466)
26 TIGR01350 lipoamide_DH dihydro 100.0 1.9E-32 4.2E-37 234.4 18.5 251 13-269 1-318 (461)
27 PRK06292 dihydrolipoamide dehy 100.0 3.3E-32 7.2E-37 232.7 18.7 254 13-272 3-320 (460)
28 PRK06115 dihydrolipoamide dehy 100.0 2.3E-32 4.9E-37 233.2 17.2 255 13-271 3-326 (466)
29 PRK09754 phenylpropionate diox 100.0 1.1E-31 2.3E-36 225.0 20.7 245 13-265 3-282 (396)
30 PTZ00058 glutathione reductase 100.0 5.7E-32 1.2E-36 232.6 19.4 248 11-263 46-378 (561)
31 PRK06327 dihydrolipoamide dehy 100.0 6.5E-32 1.4E-36 231.0 18.8 253 12-267 3-331 (475)
32 PRK05976 dihydrolipoamide dehy 100.0 1.1E-31 2.4E-36 229.7 17.3 250 12-266 3-326 (472)
33 PRK04965 NADH:flavorubredoxin 100.0 5.6E-31 1.2E-35 219.6 19.8 244 13-264 2-279 (377)
34 PRK09564 coenzyme A disulfide 100.0 6.2E-31 1.3E-35 224.1 20.3 244 15-264 2-288 (444)
35 PTZ00052 thioredoxin reductase 100.0 3.1E-31 6.7E-36 227.3 18.3 251 13-268 5-326 (499)
36 TIGR01438 TGR thioredoxin and 100.0 4.7E-31 1E-35 225.2 17.5 253 13-269 2-330 (484)
37 TIGR02374 nitri_red_nirB nitri 100.0 4.6E-31 9.9E-36 236.6 17.4 243 16-265 1-279 (785)
38 PRK06912 acoL dihydrolipoamide 100.0 2E-30 4.3E-35 221.1 18.0 249 15-268 2-315 (458)
39 TIGR03169 Nterm_to_SelD pyridi 100.0 3.5E-30 7.6E-35 214.2 18.9 241 15-264 1-285 (364)
40 PTZ00153 lipoamide dehydrogena 100.0 1.7E-30 3.8E-35 226.2 15.7 257 13-272 116-484 (659)
41 TIGR01292 TRX_reduct thioredox 100.0 1.7E-29 3.6E-34 205.0 19.8 246 14-272 1-288 (300)
42 COG0492 TrxB Thioredoxin reduc 100.0 6.8E-29 1.5E-33 197.7 19.0 237 12-264 2-279 (305)
43 KOG1335 Dihydrolipoamide dehyd 100.0 8.5E-29 1.8E-33 194.2 15.9 258 12-272 38-366 (506)
44 PRK10262 thioredoxin reductase 100.0 7.3E-28 1.6E-32 196.8 20.3 240 12-263 5-292 (321)
45 TIGR03140 AhpF alkyl hydropero 100.0 2.4E-28 5.2E-33 210.6 17.7 239 12-264 211-491 (515)
46 KOG1336 Monodehydroascorbate/f 100.0 7.2E-28 1.6E-32 194.9 18.5 247 13-266 74-356 (478)
47 KOG0405 Pyridine nucleotide-di 100.0 1.4E-28 3.1E-33 190.7 12.8 257 11-270 18-337 (478)
48 TIGR03143 AhpF_homolog putativ 100.0 9.1E-27 2E-31 202.3 21.6 237 12-261 3-284 (555)
49 PRK15317 alkyl hydroperoxide r 100.0 2.2E-27 4.7E-32 205.0 16.9 239 12-264 210-490 (517)
50 TIGR01316 gltA glutamate synth 100.0 2.9E-28 6.4E-33 206.7 10.6 239 11-265 131-430 (449)
51 PRK12831 putative oxidoreducta 99.9 3.7E-27 7.9E-32 200.4 12.1 240 11-265 138-441 (464)
52 PRK12770 putative glutamate sy 99.9 7.1E-27 1.5E-31 193.0 10.4 247 9-267 14-332 (352)
53 PRK09853 putative selenate red 99.9 3E-26 6.6E-31 204.9 15.1 238 11-266 537-823 (1019)
54 PRK11749 dihydropyrimidine deh 99.9 3.1E-26 6.7E-31 195.3 12.2 237 11-264 138-431 (457)
55 PRK12779 putative bifunctional 99.9 5.8E-26 1.3E-30 205.6 13.8 240 12-266 305-608 (944)
56 TIGR03315 Se_ygfK putative sel 99.9 1.8E-25 3.8E-30 200.9 15.2 236 12-266 536-821 (1012)
57 COG1251 NirB NAD(P)H-nitrite r 99.9 9.5E-26 2E-30 191.0 11.9 246 14-266 4-285 (793)
58 KOG2495 NADH-dehydrogenase (ub 99.9 9.5E-25 2.1E-29 174.1 16.5 250 12-266 54-375 (491)
59 PRK12778 putative bifunctional 99.9 9E-26 1.9E-30 202.7 10.9 241 11-266 429-731 (752)
60 TIGR03385 CoA_CoA_reduc CoA-di 99.9 6.4E-24 1.4E-28 180.1 18.2 232 27-265 1-276 (427)
61 PRK12810 gltD glutamate syntha 99.9 1.5E-24 3.3E-29 185.3 12.4 243 11-265 141-445 (471)
62 PRK12814 putative NADPH-depend 99.9 2.2E-24 4.8E-29 190.3 11.0 238 12-266 192-482 (652)
63 PRK12775 putative trifunctiona 99.9 1.1E-23 2.5E-28 192.4 11.9 239 12-265 429-735 (1006)
64 PRK12769 putative oxidoreducta 99.9 1.1E-23 2.3E-28 186.7 10.9 238 12-266 326-633 (654)
65 KOG4716 Thioredoxin reductase 99.9 2.4E-23 5.1E-28 161.4 10.9 257 10-270 16-352 (503)
66 TIGR01318 gltD_gamma_fam gluta 99.9 1.8E-23 3.9E-28 178.2 10.6 237 12-265 140-446 (467)
67 TIGR01372 soxA sarcosine oxida 99.9 4.9E-22 1.1E-26 182.6 17.2 236 13-265 163-453 (985)
68 PRK12809 putative oxidoreducta 99.9 4E-22 8.6E-27 176.0 10.8 237 12-265 309-615 (639)
69 COG3634 AhpF Alkyl hydroperoxi 99.9 9.3E-22 2E-26 153.2 11.0 237 12-265 210-494 (520)
70 KOG0404 Thioredoxin reductase 99.9 1.3E-21 2.8E-26 143.4 11.1 238 12-262 7-295 (322)
71 COG0446 HcaD Uncharacterized N 99.9 2.3E-20 4.9E-25 158.2 20.5 247 16-266 1-283 (415)
72 PRK13984 putative oxidoreducta 99.9 1.9E-21 4E-26 171.5 14.3 242 11-264 281-582 (604)
73 TIGR01317 GOGAT_sm_gam glutama 99.9 6.2E-22 1.3E-26 169.4 10.0 243 12-265 142-459 (485)
74 PLN02852 ferredoxin-NADP+ redu 99.9 1.6E-20 3.5E-25 158.7 15.1 245 11-264 24-400 (491)
75 PLN02172 flavin-containing mon 99.9 7.3E-21 1.6E-25 161.2 12.3 232 12-259 9-328 (461)
76 PRK12771 putative glutamate sy 99.8 7.1E-21 1.5E-25 166.3 11.4 238 11-265 135-424 (564)
77 KOG3851 Sulfide:quinone oxidor 99.8 4.4E-20 9.5E-25 142.3 10.9 250 11-268 37-342 (446)
78 KOG1346 Programmed cell death 99.8 3.6E-19 7.8E-24 142.0 15.0 250 12-265 177-492 (659)
79 KOG2755 Oxidoreductase [Genera 99.8 2.3E-19 4.9E-24 134.6 8.6 247 15-273 1-333 (334)
80 PF00743 FMO-like: Flavin-bind 99.8 5.6E-18 1.2E-22 145.5 13.0 39 14-52 2-41 (531)
81 COG3486 IucD Lysine/ornithine 99.7 2E-16 4.4E-21 126.5 16.6 253 10-262 2-388 (436)
82 PF07992 Pyr_redox_2: Pyridine 99.7 2.3E-19 4.9E-24 137.1 -1.5 34 15-48 1-35 (201)
83 COG2081 Predicted flavoprotein 99.7 6.4E-16 1.4E-20 123.9 15.5 162 13-219 3-169 (408)
84 COG1148 HdrA Heterodisulfide r 99.7 8.2E-16 1.8E-20 125.2 13.0 132 131-266 386-527 (622)
85 PF13434 K_oxygenase: L-lysine 99.6 4.7E-16 1E-20 127.0 7.3 205 13-218 2-340 (341)
86 COG0493 GltD NADPH-dependent g 99.6 1.7E-15 3.7E-20 127.2 7.5 245 12-266 122-432 (457)
87 COG2072 TrkA Predicted flavopr 99.6 8E-14 1.7E-18 118.0 16.3 147 9-157 4-210 (443)
88 KOG1399 Flavin-containing mono 99.6 5.1E-14 1.1E-18 117.8 12.8 43 12-54 5-48 (448)
89 PRK05329 anaerobic glycerol-3- 99.5 4.1E-13 8.8E-18 112.3 15.7 136 129-266 224-396 (422)
90 KOG0399 Glutamate synthase [Am 99.5 1.1E-14 2.5E-19 128.7 6.4 94 12-112 1784-1881(2142)
91 PRK06567 putative bifunctional 99.5 1.1E-13 2.5E-18 123.7 12.6 36 11-46 381-417 (1028)
92 PF03486 HI0933_like: HI0933-l 99.5 1.8E-13 3.9E-18 114.1 11.2 162 14-219 1-166 (409)
93 PRK10157 putative oxidoreducta 99.4 1.2E-11 2.7E-16 104.9 14.0 55 164-218 109-163 (428)
94 PTZ00188 adrenodoxin reductase 99.4 1.9E-11 4.2E-16 102.6 14.6 95 12-113 38-138 (506)
95 PF01266 DAO: FAD dependent ox 99.4 1.6E-12 3.5E-17 108.0 8.3 64 163-228 147-211 (358)
96 PF13738 Pyr_redox_3: Pyridine 99.4 3.1E-13 6.8E-18 103.3 3.6 138 17-156 1-201 (203)
97 COG0644 FixC Dehydrogenases (f 99.3 2E-11 4.4E-16 102.7 12.9 55 165-219 97-152 (396)
98 PRK06847 hypothetical protein; 99.3 6.5E-11 1.4E-15 99.2 15.7 59 163-221 107-165 (375)
99 TIGR00292 thiazole biosynthesi 99.3 1.9E-11 4E-16 96.0 11.4 37 12-48 20-57 (254)
100 PRK10015 oxidoreductase; Provi 99.3 3.4E-11 7.4E-16 102.1 13.8 54 165-218 110-163 (429)
101 TIGR01377 soxA_mon sarcosine o 99.3 2E-11 4.4E-16 102.5 11.0 63 164-228 146-208 (380)
102 PRK08773 2-octaprenyl-3-methyl 99.3 1E-10 2.2E-15 98.6 14.7 57 164-220 114-170 (392)
103 PRK11728 hydroxyglutarate oxid 99.3 2.8E-11 6E-16 102.0 10.8 56 163-219 149-204 (393)
104 COG0579 Predicted dehydrogenas 99.3 1.9E-11 4.1E-16 101.3 9.4 202 12-229 2-220 (429)
105 KOG2820 FAD-dependent oxidored 99.3 8.9E-11 1.9E-15 92.2 11.5 61 164-225 154-217 (399)
106 PRK08163 salicylate hydroxylas 99.2 1E-10 2.3E-15 98.7 11.9 56 165-220 111-167 (396)
107 PRK04176 ribulose-1,5-biphosph 99.2 2.5E-10 5.3E-15 89.9 12.9 37 12-48 24-61 (257)
108 PRK12409 D-amino acid dehydrog 99.2 8.3E-11 1.8E-15 99.7 10.7 56 164-219 198-258 (410)
109 PRK05714 2-octaprenyl-3-methyl 99.2 5.3E-10 1.1E-14 94.7 15.2 57 164-220 113-169 (405)
110 PRK07333 2-octaprenyl-6-methox 99.2 1E-10 2.3E-15 98.9 10.9 57 164-220 112-168 (403)
111 PTZ00383 malate:quinone oxidor 99.2 4.8E-11 1E-15 102.2 8.7 64 164-229 212-282 (497)
112 TIGR00275 flavoprotein, HI0933 99.2 1.8E-10 3.9E-15 97.0 11.8 73 144-218 85-159 (400)
113 PLN02463 lycopene beta cyclase 99.2 8.5E-10 1.8E-14 93.6 15.5 55 164-219 115-169 (447)
114 PRK07190 hypothetical protein; 99.2 2.1E-10 4.5E-15 98.8 12.0 55 165-219 111-165 (487)
115 PRK11259 solA N-methyltryptoph 99.2 3.3E-10 7.1E-15 95.0 12.8 56 163-219 149-204 (376)
116 PRK13977 myosin-cross-reactive 99.2 2.6E-10 5.7E-15 97.6 12.0 58 163-220 226-294 (576)
117 PRK07494 2-octaprenyl-6-methox 99.2 2E-10 4.3E-15 96.7 11.2 54 165-219 113-167 (388)
118 PRK07608 ubiquinone biosynthes 99.2 7.7E-10 1.7E-14 93.2 14.6 55 164-219 112-167 (388)
119 PRK00711 D-amino acid dehydrog 99.2 2.4E-10 5.1E-15 97.2 11.6 60 164-225 202-262 (416)
120 PTZ00363 rab-GDP dissociation 99.2 3.8E-10 8.3E-15 95.3 12.4 59 162-220 231-291 (443)
121 TIGR02032 GG-red-SF geranylger 99.2 4.6E-10 1E-14 90.8 12.5 56 164-219 92-148 (295)
122 TIGR03378 glycerol3P_GlpB glyc 99.2 6.1E-09 1.3E-13 86.6 18.6 103 163-265 263-397 (419)
123 TIGR01373 soxB sarcosine oxida 99.2 7.5E-10 1.6E-14 93.8 13.7 55 164-219 184-240 (407)
124 PRK07233 hypothetical protein; 99.2 2.7E-10 5.9E-15 97.4 11.0 56 163-218 198-253 (434)
125 PRK08020 ubiF 2-octaprenyl-3-m 99.2 4.7E-10 1E-14 94.5 12.3 56 165-220 114-170 (391)
126 TIGR03364 HpnW_proposed FAD de 99.2 3.1E-10 6.7E-15 94.8 11.0 52 163-219 145-197 (365)
127 COG2907 Predicted NAD/FAD-bind 99.2 1.5E-10 3.2E-15 91.3 8.3 58 168-225 222-279 (447)
128 COG1233 Phytoene dehydrogenase 99.2 2.9E-10 6.4E-15 97.9 10.7 55 163-217 224-279 (487)
129 PRK08013 oxidoreductase; Provi 99.2 5.7E-10 1.2E-14 94.2 12.2 55 165-219 113-168 (400)
130 COG0654 UbiH 2-polyprenyl-6-me 99.1 7.3E-10 1.6E-14 93.1 12.6 56 164-219 105-162 (387)
131 COG1232 HemY Protoporphyrinoge 99.1 3.9E-10 8.4E-15 94.3 10.6 59 165-226 217-275 (444)
132 PRK09126 hypothetical protein; 99.1 3.6E-10 7.8E-15 95.3 10.7 56 165-220 112-168 (392)
133 PRK11101 glpA sn-glycerol-3-ph 99.1 1.2E-10 2.7E-15 101.7 7.7 62 163-225 149-216 (546)
134 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.6E-09 3.5E-14 91.1 14.0 56 164-219 107-163 (385)
135 PRK05868 hypothetical protein; 99.1 5.1E-10 1.1E-14 93.5 10.3 46 175-220 116-161 (372)
136 PRK07364 2-octaprenyl-6-methox 99.1 3.2E-09 7E-14 90.2 15.1 56 165-220 123-182 (415)
137 PRK07588 hypothetical protein; 99.1 4.7E-10 1E-14 94.5 9.9 55 165-220 105-159 (391)
138 TIGR03329 Phn_aa_oxid putative 99.1 9.2E-10 2E-14 94.6 11.8 54 163-218 183-236 (460)
139 PRK06834 hypothetical protein; 99.1 2.2E-09 4.8E-14 92.6 14.1 58 164-221 101-158 (488)
140 PRK06184 hypothetical protein; 99.1 7.8E-10 1.7E-14 96.1 11.3 55 165-219 111-168 (502)
141 TIGR01984 UbiH 2-polyprenyl-6- 99.1 1.5E-09 3.2E-14 91.3 11.8 56 164-219 106-162 (382)
142 KOG1800 Ferredoxin/adrenodoxin 99.1 3.6E-09 7.8E-14 84.6 13.0 95 13-112 20-119 (468)
143 PF01494 FAD_binding_3: FAD bi 99.1 3.6E-10 7.8E-15 93.9 7.9 57 164-220 112-173 (356)
144 PRK13369 glycerol-3-phosphate 99.1 7.9E-10 1.7E-14 95.9 10.2 57 163-219 155-215 (502)
145 PRK05257 malate:quinone oxidor 99.1 8.7E-10 1.9E-14 94.8 10.3 66 163-229 183-255 (494)
146 PRK06481 fumarate reductase fl 99.1 6E-09 1.3E-13 90.4 15.1 64 163-226 190-259 (506)
147 PRK12266 glpD glycerol-3-phosp 99.1 4.9E-09 1.1E-13 91.0 14.4 57 163-219 155-216 (508)
148 PRK12416 protoporphyrinogen ox 99.1 4E-10 8.6E-15 97.1 7.6 52 164-217 227-278 (463)
149 PRK08274 tricarballylate dehyd 99.1 7.3E-09 1.6E-13 89.3 15.2 62 163-224 131-198 (466)
150 PRK13339 malate:quinone oxidor 99.1 1E-09 2.2E-14 93.8 9.7 66 163-229 184-256 (497)
151 PRK11883 protoporphyrinogen ox 99.1 2.5E-09 5.4E-14 91.9 12.2 39 179-217 235-273 (451)
152 PRK06753 hypothetical protein; 99.0 5.1E-09 1.1E-13 87.7 13.5 54 165-220 100-153 (373)
153 PRK01747 mnmC bifunctional tRN 99.0 2.6E-10 5.6E-15 102.1 6.0 56 163-219 408-463 (662)
154 PRK08244 hypothetical protein; 99.0 1.5E-09 3.2E-14 94.2 10.6 56 165-220 102-160 (493)
155 COG0665 DadA Glycine/D-amino a 99.0 8.7E-10 1.9E-14 92.8 8.9 56 163-219 156-212 (387)
156 TIGR01320 mal_quin_oxido malat 99.0 2.2E-09 4.7E-14 92.3 11.0 66 163-229 178-249 (483)
157 PRK08849 2-octaprenyl-3-methyl 99.0 3.6E-09 7.9E-14 88.9 12.0 57 165-221 112-169 (384)
158 PRK07236 hypothetical protein; 99.0 6.9E-09 1.5E-13 87.3 13.6 44 177-220 112-155 (386)
159 PRK06185 hypothetical protein; 99.0 7.4E-09 1.6E-13 87.8 13.8 55 165-219 110-169 (407)
160 PF00070 Pyr_redox: Pyridine n 99.0 2E-09 4.3E-14 69.1 7.9 77 125-203 4-80 (80)
161 PRK09897 hypothetical protein; 99.0 7.6E-09 1.7E-13 89.3 13.8 52 168-219 112-166 (534)
162 PRK07045 putative monooxygenas 99.0 3.7E-09 8E-14 89.0 11.6 56 165-220 108-166 (388)
163 TIGR02733 desat_CrtD C-3',4' d 99.0 1.2E-09 2.7E-14 94.7 8.9 57 162-218 231-293 (492)
164 TIGR02734 crtI_fam phytoene de 99.0 1.9E-09 4.2E-14 93.8 10.0 56 163-218 219-275 (502)
165 COG1231 Monoamine oxidase [Ami 99.0 6.6E-09 1.4E-13 85.4 12.3 52 165-216 207-259 (450)
166 PRK06617 2-octaprenyl-6-methox 99.0 2.3E-09 5E-14 89.7 9.9 56 164-220 105-161 (374)
167 TIGR01813 flavo_cyto_c flavocy 99.0 4.5E-09 9.7E-14 89.9 11.6 63 163-225 130-199 (439)
168 COG0578 GlpA Glycerol-3-phosph 99.0 4.1E-10 8.8E-15 95.5 5.1 48 12-59 11-59 (532)
169 PRK05732 2-octaprenyl-6-methox 99.0 4.7E-09 1E-13 88.6 11.6 55 165-219 114-169 (395)
170 PF05834 Lycopene_cycl: Lycope 99.0 4.5E-09 9.7E-14 87.9 11.2 55 164-219 88-142 (374)
171 PRK06996 hypothetical protein; 99.0 5.9E-09 1.3E-13 88.1 12.0 54 164-217 116-172 (398)
172 PRK06183 mhpA 3-(3-hydroxyphen 99.0 1.4E-08 3E-13 89.1 14.7 57 164-220 114-175 (538)
173 TIGR02023 BchP-ChlP geranylger 99.0 5.5E-09 1.2E-13 87.9 11.8 54 165-219 94-155 (388)
174 PLN02697 lycopene epsilon cycl 99.0 7.1E-09 1.5E-13 89.5 12.5 55 164-219 193-248 (529)
175 PLN00093 geranylgeranyl diphos 99.0 2.2E-09 4.8E-14 91.5 8.7 38 9-46 35-73 (450)
176 TIGR01790 carotene-cycl lycope 99.0 9.9E-09 2.1E-13 86.5 12.5 55 164-219 86-141 (388)
177 PRK06475 salicylate hydroxylas 99.0 4.4E-09 9.5E-14 88.9 10.2 56 164-219 108-167 (400)
178 TIGR02730 carot_isom carotene 99.0 1.9E-09 4.2E-14 93.5 8.2 57 163-219 229-286 (493)
179 PRK08850 2-octaprenyl-6-methox 99.0 2E-08 4.3E-13 85.1 14.2 55 165-219 113-168 (405)
180 COG4529 Uncharacterized protei 99.0 2.7E-08 5.9E-13 82.6 14.3 36 13-48 1-40 (474)
181 TIGR00562 proto_IX_ox protopor 99.0 6E-09 1.3E-13 89.8 10.9 40 178-217 238-277 (462)
182 PRK06175 L-aspartate oxidase; 99.0 6.8E-09 1.5E-13 88.3 10.9 38 12-49 3-40 (433)
183 PRK11445 putative oxidoreducta 98.9 1.8E-08 3.9E-13 83.6 12.6 53 165-218 101-156 (351)
184 PRK08243 4-hydroxybenzoate 3-m 98.9 1.7E-08 3.6E-13 85.2 12.2 56 165-220 105-164 (392)
185 PF13450 NAD_binding_8: NAD(P) 98.9 1.4E-09 2.9E-14 67.1 3.8 37 18-54 1-38 (68)
186 PRK07804 L-aspartate oxidase; 98.9 6.9E-08 1.5E-12 84.5 15.9 37 12-48 15-52 (541)
187 PLN02661 Putative thiazole syn 98.9 2.7E-08 5.9E-13 80.6 12.3 37 12-48 91-129 (357)
188 PRK06126 hypothetical protein; 98.9 5.2E-08 1.1E-12 85.7 15.1 55 165-219 128-188 (545)
189 PLN02612 phytoene desaturase 98.9 3.3E-08 7.1E-13 86.9 13.7 55 163-217 308-364 (567)
190 PF00890 FAD_binding_2: FAD bi 98.9 8.2E-09 1.8E-13 87.8 9.4 58 163-220 141-204 (417)
191 PRK08132 FAD-dependent oxidore 98.9 3.3E-08 7.1E-13 86.9 13.0 56 165-220 127-186 (547)
192 TIGR01989 COQ6 Ubiquinone bios 98.9 3.1E-08 6.7E-13 84.7 12.3 56 165-220 119-184 (437)
193 PRK07121 hypothetical protein; 98.9 1.7E-08 3.7E-13 87.6 10.6 63 163-225 177-246 (492)
194 TIGR03219 salicylate_mono sali 98.9 6.8E-08 1.5E-12 82.1 13.9 53 165-219 107-159 (414)
195 PLN02464 glycerol-3-phosphate 98.9 4.3E-09 9.3E-14 93.2 6.7 58 162-219 231-296 (627)
196 PRK12842 putative succinate de 98.9 2.1E-08 4.5E-13 88.4 11.0 41 11-51 7-48 (574)
197 COG3380 Predicted NAD/FAD-depe 98.9 2.5E-08 5.4E-13 76.4 9.6 49 176-224 116-165 (331)
198 PF12831 FAD_oxidored: FAD dep 98.9 1.4E-09 3E-14 92.4 3.1 52 166-217 93-148 (428)
199 TIGR02731 phytoene_desat phyto 98.8 6.7E-08 1.4E-12 83.1 13.1 55 163-217 213-274 (453)
200 PRK08205 sdhA succinate dehydr 98.8 6.5E-08 1.4E-12 85.4 13.2 56 163-218 140-205 (583)
201 TIGR02732 zeta_caro_desat caro 98.8 4.4E-08 9.6E-13 84.4 11.6 62 164-225 220-290 (474)
202 PRK08401 L-aspartate oxidase; 98.8 4E-08 8.7E-13 84.5 11.3 55 163-219 120-175 (466)
203 PRK06263 sdhA succinate dehydr 98.8 1.1E-07 2.4E-12 83.4 14.2 56 163-218 134-196 (543)
204 COG1635 THI4 Ribulose 1,5-bisp 98.8 2.8E-09 6E-14 79.1 3.4 37 13-49 30-67 (262)
205 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 4.6E-08 1E-12 82.4 11.2 55 165-219 105-163 (390)
206 PRK05192 tRNA uridine 5-carbox 98.8 4.6E-08 1E-12 84.9 11.3 53 165-218 102-156 (618)
207 TIGR02028 ChlP geranylgeranyl 98.8 7.2E-08 1.6E-12 81.3 12.1 34 14-47 1-35 (398)
208 PRK12834 putative FAD-binding 98.8 1.8E-07 3.8E-12 82.3 14.9 38 12-49 3-43 (549)
209 PRK07803 sdhA succinate dehydr 98.8 1.2E-07 2.5E-12 84.4 13.7 37 12-48 7-44 (626)
210 PRK06452 sdhA succinate dehydr 98.8 5.7E-08 1.2E-12 85.4 11.5 55 163-217 136-196 (566)
211 PLN02676 polyamine oxidase 98.8 4.7E-08 1E-12 84.3 10.7 40 178-217 245-284 (487)
212 PF01946 Thi4: Thi4 family; PD 98.8 4.2E-09 9E-14 78.5 3.6 38 12-49 16-54 (230)
213 PRK05945 sdhA succinate dehydr 98.8 7.3E-08 1.6E-12 85.0 12.0 56 163-218 135-196 (575)
214 COG2509 Uncharacterized FAD-de 98.8 1.6E-07 3.5E-12 77.2 13.0 70 155-225 165-235 (486)
215 PRK07538 hypothetical protein; 98.8 4.6E-08 1E-12 83.1 10.3 55 165-219 104-165 (413)
216 PF01134 GIDA: Glucose inhibit 98.8 1E-08 2.2E-13 84.4 6.0 97 15-111 1-150 (392)
217 PRK06069 sdhA succinate dehydr 98.8 1.7E-07 3.7E-12 82.8 14.1 56 163-218 137-199 (577)
218 PLN02487 zeta-carotene desatur 98.8 7.6E-08 1.6E-12 84.0 11.6 62 164-225 296-366 (569)
219 PRK07395 L-aspartate oxidase; 98.8 7.2E-08 1.6E-12 84.4 11.4 38 12-49 8-45 (553)
220 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.8E-07 3.9E-12 82.6 14.0 56 163-218 129-190 (566)
221 KOG2665 Predicted FAD-dependen 98.8 1.8E-08 3.8E-13 78.9 6.5 197 12-229 47-266 (453)
222 TIGR00551 nadB L-aspartate oxi 98.8 1.6E-07 3.5E-12 81.3 12.8 57 163-219 128-189 (488)
223 PRK07843 3-ketosteroid-delta-1 98.8 4.5E-07 9.7E-12 79.8 15.4 64 163-226 208-277 (557)
224 PTZ00139 Succinate dehydrogena 98.7 3.7E-07 7.9E-12 81.1 14.8 55 163-217 166-227 (617)
225 PRK07573 sdhA succinate dehydr 98.7 1.3E-07 2.9E-12 84.1 11.7 51 167-217 174-230 (640)
226 PRK08071 L-aspartate oxidase; 98.7 2.2E-07 4.9E-12 80.7 12.4 37 13-49 3-39 (510)
227 PF06039 Mqo: Malate:quinone o 98.7 6.7E-08 1.4E-12 80.1 8.4 101 164-266 182-297 (488)
228 PRK09078 sdhA succinate dehydr 98.7 3E-07 6.6E-12 81.4 13.1 56 163-218 149-211 (598)
229 KOG2415 Electron transfer flav 98.7 1.2E-07 2.6E-12 77.0 9.6 57 164-220 184-257 (621)
230 PRK06854 adenylylsulfate reduc 98.7 5.8E-07 1.3E-11 79.7 14.7 54 164-217 133-193 (608)
231 PRK07057 sdhA succinate dehydr 98.7 4.6E-07 9.9E-12 80.2 13.5 56 163-218 148-210 (591)
232 PF13454 NAD_binding_9: FAD-NA 98.7 3.7E-07 8.1E-12 66.5 10.7 42 176-217 113-155 (156)
233 PRK12835 3-ketosteroid-delta-1 98.7 6.5E-07 1.4E-11 79.0 14.0 39 12-50 10-49 (584)
234 PLN00128 Succinate dehydrogena 98.7 4.1E-07 8.8E-12 80.9 12.6 56 162-217 186-248 (635)
235 PRK08958 sdhA succinate dehydr 98.6 3.4E-07 7.5E-12 80.8 11.4 55 163-217 143-204 (588)
236 PRK12845 3-ketosteroid-delta-1 98.6 1.3E-06 2.8E-11 76.8 14.8 41 11-52 14-55 (564)
237 KOG0029 Amine oxidase [Seconda 98.6 3.9E-08 8.5E-13 84.3 5.2 41 11-51 13-54 (501)
238 PRK12843 putative FAD-binding 98.6 2E-06 4.3E-11 76.1 15.7 64 163-226 221-290 (578)
239 PRK08275 putative oxidoreducta 98.6 7.6E-07 1.6E-11 78.3 13.0 57 163-219 137-200 (554)
240 PRK09077 L-aspartate oxidase; 98.6 6E-07 1.3E-11 78.6 12.2 38 12-49 7-44 (536)
241 TIGR01176 fum_red_Fp fumarate 98.6 8.4E-07 1.8E-11 78.2 13.2 55 163-217 132-193 (580)
242 PRK08641 sdhA succinate dehydr 98.6 7.5E-07 1.6E-11 78.8 12.7 36 13-48 3-39 (589)
243 PRK06134 putative FAD-binding 98.6 1.9E-06 4.1E-11 76.2 15.2 56 164-219 218-278 (581)
244 PLN02815 L-aspartate oxidase 98.6 6.1E-07 1.3E-11 79.1 11.8 36 13-49 29-65 (594)
245 PRK09231 fumarate reductase fl 98.6 7.7E-07 1.7E-11 78.6 12.4 54 164-217 134-194 (582)
246 TIGR01789 lycopene_cycl lycope 98.6 4.1E-07 8.8E-12 75.9 9.6 35 15-49 1-38 (370)
247 PRK08626 fumarate reductase fl 98.6 6.3E-07 1.4E-11 80.0 11.4 52 165-216 160-217 (657)
248 PRK07512 L-aspartate oxidase; 98.6 9.6E-07 2.1E-11 76.9 12.1 56 163-218 136-196 (513)
249 KOG0685 Flavin-containing amin 98.6 9.2E-07 2E-11 73.2 11.1 39 13-51 21-61 (498)
250 PF04820 Trp_halogenase: Trypt 98.6 6.1E-08 1.3E-12 82.8 4.3 55 164-219 155-211 (454)
251 PRK07208 hypothetical protein; 98.5 9.2E-08 2E-12 82.9 5.1 56 163-218 218-279 (479)
252 PRK12839 hypothetical protein; 98.5 4.7E-06 1E-10 73.5 15.5 40 12-51 7-47 (572)
253 TIGR01811 sdhA_Bsu succinate d 98.5 1.4E-06 3.1E-11 77.1 12.4 32 16-47 1-33 (603)
254 TIGR00136 gidA glucose-inhibit 98.5 5.5E-07 1.2E-11 78.3 9.5 55 164-219 97-154 (617)
255 TIGR02485 CobZ_N-term precorri 98.5 2E-06 4.4E-11 73.5 12.2 64 163-226 123-191 (432)
256 COG3349 Uncharacterized conser 98.5 1.7E-07 3.8E-12 78.6 5.0 39 14-52 1-40 (485)
257 PTZ00306 NADH-dependent fumara 98.5 3.4E-06 7.3E-11 80.2 13.9 39 12-50 408-447 (1167)
258 KOG2404 Fumarate reductase, fl 98.5 9.9E-08 2.1E-12 75.0 2.8 43 14-56 10-53 (477)
259 PLN02268 probable polyamine ox 98.4 1.9E-07 4.1E-12 79.9 4.5 49 168-217 202-250 (435)
260 PLN02576 protoporphyrinogen ox 98.4 2.9E-07 6.3E-12 80.2 5.1 40 12-51 11-52 (496)
261 KOG2853 Possible oxidoreductas 98.4 3.6E-06 7.7E-11 67.0 10.5 36 13-48 86-126 (509)
262 PLN02568 polyamine oxidase 98.4 3.4E-07 7.3E-12 79.8 5.3 51 165-217 244-294 (539)
263 KOG4254 Phytoene desaturase [C 98.4 7.3E-07 1.6E-11 73.3 6.3 67 163-229 264-332 (561)
264 TIGR00031 UDP-GALP_mutase UDP- 98.4 3.5E-07 7.5E-12 75.8 4.5 38 13-50 1-39 (377)
265 TIGR02061 aprA adenosine phosp 98.4 1.1E-05 2.3E-10 71.5 13.5 55 164-218 127-190 (614)
266 TIGR01292 TRX_reduct thioredox 98.3 6.9E-06 1.5E-10 66.6 10.8 97 125-224 5-117 (300)
267 COG0029 NadB Aspartate oxidase 98.3 1.1E-05 2.4E-10 67.5 11.8 55 162-216 132-193 (518)
268 COG1053 SdhA Succinate dehydro 98.3 1.3E-06 2.9E-11 76.1 6.5 40 11-50 4-44 (562)
269 COG1249 Lpd Pyruvate/2-oxoglut 98.3 1.5E-06 3.2E-11 73.8 6.2 99 12-121 172-280 (454)
270 PTZ00367 squalene epoxidase; P 98.3 7.5E-07 1.6E-11 77.9 4.4 34 12-45 32-66 (567)
271 KOG2844 Dimethylglycine dehydr 98.3 1E-06 2.2E-11 75.8 4.3 56 163-219 187-243 (856)
272 COG0445 GidA Flavin-dependent 98.2 5.3E-07 1.1E-11 76.0 2.3 33 13-45 4-37 (621)
273 PRK05335 tRNA (uracil-5-)-meth 98.2 1.3E-06 2.8E-11 72.9 4.6 35 13-47 2-37 (436)
274 PLN02985 squalene monooxygenas 98.2 1.3E-06 2.9E-11 75.9 4.9 36 11-46 41-77 (514)
275 COG0562 Glf UDP-galactopyranos 98.2 1.7E-06 3.6E-11 68.2 4.2 38 13-50 1-39 (374)
276 PLN02927 antheraxanthin epoxid 98.2 2.1E-06 4.6E-11 75.9 4.5 35 11-45 79-114 (668)
277 PRK08294 phenol 2-monooxygenas 98.1 3.1E-06 6.7E-11 75.5 5.0 35 12-46 31-67 (634)
278 PRK12837 3-ketosteroid-delta-1 98.1 3.1E-06 6.8E-11 73.8 4.5 37 12-49 6-43 (513)
279 PLN02529 lysine-specific histo 98.1 4E-06 8.7E-11 75.2 4.8 39 12-50 159-198 (738)
280 KOG2614 Kynurenine 3-monooxyge 98.1 4.7E-06 1E-10 68.1 4.3 35 13-47 2-37 (420)
281 PLN02328 lysine-specific histo 98.1 4.9E-06 1.1E-10 75.1 4.8 40 12-51 237-277 (808)
282 PF13738 Pyr_redox_3: Pyridine 98.1 3E-05 6.5E-10 59.1 8.5 91 126-218 3-137 (203)
283 KOG2852 Possible oxidoreductas 98.0 2.5E-05 5.3E-10 60.9 7.6 48 12-59 9-63 (380)
284 PRK13512 coenzyme A disulfide 98.0 1.3E-05 2.7E-10 68.7 6.6 96 13-117 148-245 (438)
285 KOG0042 Glycerol-3-phosphate d 98.0 1.2E-06 2.6E-11 73.5 0.2 45 13-57 67-112 (680)
286 PF00070 Pyr_redox: Pyridine n 98.0 9.3E-06 2E-10 51.9 4.2 34 15-48 1-35 (80)
287 PRK12844 3-ketosteroid-delta-1 98.0 7.2E-06 1.6E-10 72.2 4.8 39 12-50 5-44 (557)
288 PRK07251 pyridine nucleotide-d 98.0 1.5E-05 3.3E-10 68.3 6.6 96 13-117 157-257 (438)
289 PF00732 GMC_oxred_N: GMC oxid 98.0 5.9E-06 1.3E-10 67.0 3.9 64 166-229 196-268 (296)
290 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 7.1E-06 1.5E-10 68.9 4.3 35 14-48 1-36 (433)
291 PRK04965 NADH:flavorubredoxin 98.0 2E-05 4.4E-10 66.2 7.1 95 13-115 141-241 (377)
292 TIGR01421 gluta_reduc_1 glutat 98.0 1.7E-05 3.8E-10 68.1 6.6 95 13-117 166-269 (450)
293 TIGR02462 pyranose_ox pyranose 98.0 8.2E-06 1.8E-10 70.8 4.3 39 14-52 1-40 (544)
294 KOG1276 Protoporphyrinogen oxi 97.9 1.1E-05 2.5E-10 66.1 4.5 40 12-51 10-52 (491)
295 PRK05976 dihydrolipoamide dehy 97.9 2.1E-05 4.5E-10 68.1 6.4 96 13-117 180-285 (472)
296 TIGR01350 lipoamide_DH dihydro 97.9 1.9E-05 4E-10 68.3 6.1 95 13-116 170-272 (461)
297 PRK06116 glutathione reductase 97.9 1.9E-05 4.2E-10 67.9 6.1 96 13-117 167-269 (450)
298 PRK07846 mycothione reductase; 97.9 3.1E-05 6.6E-10 66.6 7.2 95 13-117 166-266 (451)
299 COG3075 GlpB Anaerobic glycero 97.9 1.4E-05 3.1E-10 63.3 4.2 102 164-265 259-392 (421)
300 PRK08255 salicylyl-CoA 5-hydro 97.9 1.2E-05 2.6E-10 73.4 4.4 34 14-47 1-37 (765)
301 PTZ00318 NADH dehydrogenase-li 97.9 3.8E-05 8.2E-10 65.6 7.1 92 14-114 174-281 (424)
302 PRK06416 dihydrolipoamide dehy 97.9 2.6E-05 5.5E-10 67.4 5.9 96 13-117 172-276 (462)
303 PRK02106 choline dehydrogenase 97.9 2.1E-05 4.6E-10 69.5 5.1 37 10-46 2-40 (560)
304 PRK05249 soluble pyridine nucl 97.8 3.6E-05 7.8E-10 66.5 6.3 96 13-117 175-276 (461)
305 PF06100 Strep_67kDa_ant: Stre 97.8 0.00013 2.8E-09 61.6 8.9 39 13-51 2-45 (500)
306 TIGR03452 mycothione_red mycot 97.8 6.4E-05 1.4E-09 64.7 7.4 95 13-117 169-269 (452)
307 KOG1298 Squalene monooxygenase 97.8 2.3E-05 5E-10 63.5 4.2 34 11-44 43-77 (509)
308 TIGR03385 CoA_CoA_reduc CoA-di 97.8 3.6E-05 7.9E-10 65.8 5.8 97 13-117 137-237 (427)
309 PLN03000 amine oxidase 97.8 2.2E-05 4.9E-10 71.1 4.6 41 12-52 183-224 (881)
310 COG0446 HcaD Uncharacterized N 97.8 3.8E-05 8.2E-10 65.2 5.5 92 13-114 136-238 (415)
311 PRK15317 alkyl hydroperoxide r 97.8 0.00026 5.6E-09 62.1 10.7 98 122-221 213-324 (517)
312 TIGR01424 gluta_reduc_2 glutat 97.8 5E-05 1.1E-09 65.3 6.1 95 13-116 166-266 (446)
313 TIGR01423 trypano_reduc trypan 97.8 5.3E-05 1.1E-09 65.6 6.1 95 13-117 187-292 (486)
314 TIGR03140 AhpF alkyl hydropero 97.8 0.00027 5.9E-09 61.9 10.6 97 123-221 215-325 (515)
315 PLN02976 amine oxidase 97.8 3E-05 6.6E-10 73.2 4.7 40 12-51 692-732 (1713)
316 PRK06912 acoL dihydrolipoamide 97.8 5.6E-05 1.2E-09 65.2 6.0 96 13-117 170-272 (458)
317 KOG2311 NAD/FAD-utilizing prot 97.7 2.3E-05 5.1E-10 65.2 3.3 34 11-44 26-60 (679)
318 PLN02507 glutathione reductase 97.7 6.5E-05 1.4E-09 65.4 6.2 95 13-117 203-304 (499)
319 PRK07845 flavoprotein disulfid 97.7 6.9E-05 1.5E-09 64.8 6.2 94 14-117 178-278 (466)
320 PRK13800 putative oxidoreducta 97.7 3.7E-05 8E-10 71.6 4.8 35 12-46 12-47 (897)
321 PRK06370 mercuric reductase; V 97.7 9.2E-05 2E-09 64.0 6.9 95 13-116 171-274 (463)
322 TIGR03862 flavo_PP4765 unchara 97.7 0.0019 4E-08 53.8 13.9 66 152-219 73-141 (376)
323 COG1252 Ndh NADH dehydrogenase 97.7 6.6E-05 1.4E-09 62.5 5.4 90 14-114 156-263 (405)
324 TIGR02053 MerA mercuric reduct 97.7 7.9E-05 1.7E-09 64.4 6.1 96 13-117 166-270 (463)
325 PRK09754 phenylpropionate diox 97.7 0.00041 8.9E-09 58.8 9.9 96 123-220 6-113 (396)
326 PRK06327 dihydrolipoamide dehy 97.7 0.0001 2.2E-09 63.9 6.3 96 13-117 183-288 (475)
327 PTZ00058 glutathione reductase 97.6 0.0001 2.3E-09 64.7 6.1 96 13-118 237-341 (561)
328 PRK06292 dihydrolipoamide dehy 97.6 0.00013 2.7E-09 63.1 6.6 36 13-48 169-205 (460)
329 PRK07818 dihydrolipoamide dehy 97.6 0.00012 2.7E-09 63.2 6.4 96 13-117 172-277 (466)
330 PRK06467 dihydrolipoamide dehy 97.6 0.00011 2.4E-09 63.6 6.0 35 14-48 175-210 (471)
331 PRK14694 putative mercuric red 97.6 0.00019 4E-09 62.2 7.3 94 13-117 178-277 (468)
332 PRK09564 coenzyme A disulfide 97.6 0.00042 9E-09 59.7 9.4 98 125-222 5-118 (444)
333 PTZ00052 thioredoxin reductase 97.6 0.00014 3.1E-09 63.3 6.2 94 14-117 183-282 (499)
334 COG2303 BetA Choline dehydroge 97.6 9.5E-05 2E-09 64.9 4.7 62 168-229 208-276 (542)
335 PRK06115 dihydrolipoamide dehy 97.5 0.0002 4.3E-09 61.9 6.3 35 13-47 174-209 (466)
336 TIGR02374 nitri_red_nirB nitri 97.5 0.00052 1.1E-08 63.1 8.8 98 126-225 4-114 (785)
337 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00058 1.2E-08 57.2 8.3 97 125-224 4-112 (364)
338 KOG1336 Monodehydroascorbate/f 97.5 0.00034 7.4E-09 58.5 6.4 97 13-119 213-319 (478)
339 PLN02785 Protein HOTHEAD 97.4 0.00018 3.8E-09 63.7 4.6 34 13-46 55-88 (587)
340 PLN02546 glutathione reductase 97.4 0.00027 5.9E-09 62.2 5.7 35 13-47 252-287 (558)
341 PRK13748 putative mercuric red 97.4 0.00043 9.3E-09 61.4 7.0 94 13-117 270-369 (561)
342 PLN02172 flavin-containing mon 97.4 0.00059 1.3E-08 58.8 7.6 89 12-118 203-293 (461)
343 PRK14989 nitrite reductase sub 97.4 0.0011 2.5E-08 61.2 9.4 101 122-224 5-118 (847)
344 PRK08010 pyridine nucleotide-d 97.4 0.00042 9.2E-09 59.5 6.2 95 13-117 158-258 (441)
345 TIGR01438 TGR thioredoxin and 97.4 0.00046 9.9E-09 59.9 6.3 32 13-44 180-212 (484)
346 TIGR01810 betA choline dehydro 97.3 0.00021 4.6E-09 62.9 4.0 61 169-229 200-265 (532)
347 KOG2960 Protein involved in th 97.3 6E-05 1.3E-09 56.1 0.2 36 13-48 76-114 (328)
348 COG3573 Predicted oxidoreducta 97.3 0.0004 8.6E-09 55.6 4.7 34 13-46 5-39 (552)
349 KOG1335 Dihydrolipoamide dehyd 97.3 0.00016 3.5E-09 58.7 2.3 101 13-122 211-323 (506)
350 PRK14727 putative mercuric red 97.3 0.001 2.2E-08 57.8 7.3 94 13-117 188-287 (479)
351 PRK10262 thioredoxin reductase 97.3 0.00075 1.6E-08 55.4 6.2 35 13-47 146-181 (321)
352 PTZ00153 lipoamide dehydrogena 97.2 0.00065 1.4E-08 60.8 6.0 36 13-48 312-348 (659)
353 KOG2495 NADH-dehydrogenase (ub 97.0 0.00036 7.8E-09 57.6 2.2 90 14-114 219-330 (491)
354 TIGR03143 AhpF_homolog putativ 97.0 0.0082 1.8E-07 53.2 10.5 94 125-222 9-117 (555)
355 TIGR03197 MnmC_Cterm tRNA U-34 97.0 0.0014 3E-08 55.2 5.4 56 163-219 135-190 (381)
356 PF00996 GDI: GDP dissociation 97.0 0.0008 1.7E-08 57.0 3.9 58 163-220 232-290 (438)
357 KOG1238 Glucose dehydrogenase/ 96.9 0.0012 2.5E-08 57.6 4.3 37 11-47 55-93 (623)
358 PRK12779 putative bifunctional 96.9 0.002 4.4E-08 60.2 5.9 91 120-220 306-406 (944)
359 KOG3855 Monooxygenase involved 96.7 0.0018 4E-08 53.3 3.8 32 13-44 36-72 (481)
360 TIGR02352 thiamin_ThiO glycine 96.7 0.0045 9.8E-08 51.1 6.3 57 162-219 136-193 (337)
361 PRK01438 murD UDP-N-acetylmura 96.7 0.0028 6.1E-08 55.1 5.2 33 13-45 16-49 (480)
362 PF07992 Pyr_redox_2: Pyridine 96.7 0.0016 3.5E-08 49.4 3.1 136 125-263 4-200 (201)
363 PF01134 GIDA: Glucose inhibit 96.6 0.016 3.5E-07 48.4 8.9 52 165-217 97-150 (392)
364 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.003 6.4E-08 46.0 3.9 31 15-45 1-32 (157)
365 COG0492 TrxB Thioredoxin reduc 96.6 0.027 5.7E-07 45.8 9.7 59 162-222 60-118 (305)
366 PRK12810 gltD glutamate syntha 96.6 0.01 2.2E-07 51.5 7.8 34 13-46 281-316 (471)
367 COG0569 TrkA K+ transport syst 96.6 0.0028 6E-08 49.1 3.8 34 14-47 1-35 (225)
368 PRK11749 dihydropyrimidine deh 96.5 0.0047 1E-07 53.4 5.1 88 120-218 140-236 (457)
369 PRK02705 murD UDP-N-acetylmura 96.4 0.0037 8E-08 54.1 4.2 33 15-47 2-35 (459)
370 PF00743 FMO-like: Flavin-bind 96.4 0.024 5.2E-07 49.8 8.8 35 12-46 182-217 (531)
371 PRK12770 putative glutamate sy 96.4 0.017 3.7E-07 48.1 7.6 96 121-218 19-129 (352)
372 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0034 7.3E-08 50.3 3.1 34 13-46 3-37 (439)
373 PF13241 NAD_binding_7: Putati 96.3 0.0052 1.1E-07 41.2 3.6 34 12-45 6-40 (103)
374 COG1251 NirB NAD(P)H-nitrite r 96.3 0.037 7.9E-07 49.4 9.2 56 170-227 66-121 (793)
375 PRK09853 putative selenate red 96.2 0.015 3.3E-07 54.4 7.1 88 120-219 539-635 (1019)
376 PF02737 3HCDH_N: 3-hydroxyacy 96.2 0.0059 1.3E-07 45.5 3.8 32 15-46 1-33 (180)
377 COG3634 AhpF Alkyl hydroperoxi 96.2 0.0069 1.5E-07 49.0 4.3 37 10-46 351-388 (520)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0048 1E-07 46.2 2.9 33 14-46 1-34 (185)
379 TIGR01470 cysG_Nterm siroheme 96.1 0.01 2.2E-07 45.2 4.7 34 13-46 9-43 (205)
380 PRK06249 2-dehydropantoate 2-r 96.1 0.0086 1.9E-07 49.0 4.6 34 12-45 4-38 (313)
381 KOG4405 GDP dissociation inhib 96.1 0.0072 1.6E-07 49.8 3.9 44 12-55 7-51 (547)
382 PRK14106 murD UDP-N-acetylmura 96.1 0.0092 2E-07 51.5 4.8 33 13-45 5-38 (450)
383 PRK07819 3-hydroxybutyryl-CoA 96.0 0.0088 1.9E-07 48.2 4.2 35 13-47 5-40 (286)
384 TIGR01316 gltA glutamate synth 96.0 0.02 4.3E-07 49.4 6.3 90 120-220 133-232 (449)
385 PLN02852 ferredoxin-NADP+ redu 95.9 0.015 3.2E-07 50.4 5.2 91 120-219 26-126 (491)
386 COG2072 TrkA Predicted flavopr 95.9 0.23 5.1E-06 42.8 12.3 133 123-261 11-186 (443)
387 PRK12778 putative bifunctional 95.9 0.011 2.5E-07 54.4 4.7 90 122-221 433-532 (752)
388 PRK06719 precorrin-2 dehydroge 95.9 0.016 3.5E-07 42.1 4.5 33 12-44 12-45 (157)
389 PF02558 ApbA: Ketopantoate re 95.9 0.012 2.6E-07 42.5 3.8 30 16-45 1-31 (151)
390 PF01593 Amino_oxidase: Flavin 95.9 0.012 2.7E-07 50.0 4.6 53 165-217 211-263 (450)
391 PRK12831 putative oxidoreducta 95.8 0.032 6.9E-07 48.4 6.9 91 120-220 140-242 (464)
392 PF01593 Amino_oxidase: Flavin 95.8 0.0076 1.6E-07 51.4 3.0 30 23-52 1-31 (450)
393 KOG0405 Pyridine nucleotide-di 95.8 0.0056 1.2E-07 49.5 1.9 102 12-123 188-297 (478)
394 PRK06718 precorrin-2 dehydroge 95.8 0.018 3.9E-07 43.8 4.6 33 12-44 9-42 (202)
395 COG1004 Ugd Predicted UDP-gluc 95.7 0.012 2.7E-07 48.5 3.7 32 14-45 1-33 (414)
396 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.016 3.4E-07 47.4 3.8 33 14-46 3-36 (308)
397 PRK05708 2-dehydropantoate 2-r 95.5 0.02 4.3E-07 46.7 4.3 32 14-45 3-35 (305)
398 PF01262 AlaDh_PNT_C: Alanine 95.5 0.02 4.3E-07 42.2 3.9 33 13-45 20-53 (168)
399 PRK08229 2-dehydropantoate 2-r 95.4 0.021 4.5E-07 47.4 4.3 32 14-45 3-35 (341)
400 PF01488 Shikimate_DH: Shikima 95.4 0.034 7.3E-07 39.3 4.7 34 12-45 11-46 (135)
401 TIGR03467 HpnE squalene-associ 95.3 0.037 8E-07 47.1 5.6 52 167-218 201-253 (419)
402 PRK04148 hypothetical protein; 95.3 0.017 3.6E-07 40.5 2.7 33 13-46 17-50 (134)
403 PRK12775 putative trifunctiona 95.3 0.047 1E-06 51.9 6.4 85 126-220 436-531 (1006)
404 COG1635 THI4 Ribulose 1,5-bisp 95.3 0.21 4.6E-06 38.1 8.5 131 126-260 36-228 (262)
405 TIGR01317 GOGAT_sm_gam glutama 95.2 0.066 1.4E-06 46.7 6.8 87 121-218 144-239 (485)
406 PRK07530 3-hydroxybutyryl-CoA 95.2 0.027 5.9E-07 45.6 4.2 33 14-46 5-38 (292)
407 KOG3923 D-aspartate oxidase [A 95.2 0.024 5.2E-07 44.9 3.5 44 164-219 152-195 (342)
408 PRK08293 3-hydroxybutyryl-CoA 95.2 0.025 5.5E-07 45.7 3.9 33 14-46 4-37 (287)
409 KOG1399 Flavin-containing mono 95.2 0.11 2.4E-06 44.5 7.8 96 121-218 7-152 (448)
410 PRK09424 pntA NAD(P) transhydr 95.2 0.021 4.6E-07 49.5 3.6 34 13-46 165-199 (509)
411 cd01080 NAD_bind_m-THF_DH_Cycl 95.1 0.04 8.6E-07 40.5 4.4 33 12-44 43-77 (168)
412 PRK09260 3-hydroxybutyryl-CoA 95.1 0.026 5.6E-07 45.6 3.8 33 14-46 2-35 (288)
413 TIGR03377 glycerol3P_GlpA glyc 95.1 0.065 1.4E-06 47.2 6.5 66 163-229 128-199 (516)
414 PRK06522 2-dehydropantoate 2-r 95.1 0.029 6.2E-07 45.7 4.0 31 15-45 2-33 (304)
415 cd00401 AdoHcyase S-adenosyl-L 95.1 0.031 6.6E-07 47.3 4.2 33 13-45 202-235 (413)
416 TIGR00518 alaDH alanine dehydr 95.1 0.034 7.3E-07 46.6 4.3 33 13-45 167-200 (370)
417 TIGR01318 gltD_gamma_fam gluta 95.0 0.074 1.6E-06 46.2 6.6 90 120-220 141-239 (467)
418 KOG0404 Thioredoxin reductase 95.0 0.067 1.4E-06 40.8 5.3 65 161-227 68-132 (322)
419 PRK07066 3-hydroxybutyryl-CoA 95.0 0.031 6.6E-07 45.7 3.9 33 14-46 8-41 (321)
420 PRK12921 2-dehydropantoate 2-r 95.0 0.033 7.1E-07 45.4 4.0 29 15-43 2-31 (305)
421 TIGR01763 MalateDH_bact malate 94.9 0.048 1E-06 44.4 4.7 33 14-46 2-36 (305)
422 cd05292 LDH_2 A subgroup of L- 94.9 0.041 8.8E-07 44.9 4.3 32 15-46 2-36 (308)
423 TIGR01372 soxA sarcosine oxida 94.8 0.27 5.9E-06 46.9 10.2 99 122-222 165-289 (985)
424 PTZ00082 L-lactate dehydrogena 94.8 0.06 1.3E-06 44.2 5.2 36 12-47 5-42 (321)
425 PRK01368 murD UDP-N-acetylmura 94.8 0.055 1.2E-06 46.7 5.0 33 13-45 6-38 (454)
426 PRK06130 3-hydroxybutyryl-CoA 94.7 0.046 1E-06 44.7 4.4 34 13-46 4-38 (311)
427 PRK06035 3-hydroxyacyl-CoA deh 94.7 0.037 8.1E-07 44.8 3.7 33 14-46 4-37 (291)
428 PRK02472 murD UDP-N-acetylmura 94.7 0.05 1.1E-06 47.0 4.7 33 13-45 5-38 (447)
429 PRK00066 ldh L-lactate dehydro 94.7 0.071 1.5E-06 43.6 5.2 36 11-46 4-42 (315)
430 PRK01438 murD UDP-N-acetylmura 94.7 0.12 2.7E-06 45.0 7.0 79 122-225 18-96 (480)
431 PTZ00188 adrenodoxin reductase 94.6 0.083 1.8E-06 45.6 5.6 90 120-219 39-138 (506)
432 COG5044 MRS6 RAB proteins gera 94.6 0.079 1.7E-06 43.4 5.0 43 13-55 6-49 (434)
433 PRK12814 putative NADPH-depend 94.6 0.04 8.7E-07 49.9 3.8 89 120-219 193-290 (652)
434 PRK05808 3-hydroxybutyryl-CoA 94.6 0.045 9.8E-07 44.1 3.8 33 14-46 4-37 (282)
435 PF13478 XdhC_C: XdhC Rossmann 94.5 0.036 7.7E-07 39.2 2.8 31 16-46 1-32 (136)
436 PRK14618 NAD(P)H-dependent gly 94.5 0.065 1.4E-06 44.2 4.6 33 14-46 5-38 (328)
437 COG0686 Ald Alanine dehydrogen 94.4 0.038 8.3E-07 44.1 3.0 32 13-44 168-200 (371)
438 TIGR01789 lycopene_cycl lycope 94.4 0.36 7.9E-06 40.6 9.0 39 177-219 100-138 (370)
439 PLN02268 probable polyamine ox 94.4 0.11 2.3E-06 44.8 6.0 38 14-51 1-39 (435)
440 COG1748 LYS9 Saccharopine dehy 94.4 0.06 1.3E-06 45.0 4.2 33 13-45 1-35 (389)
441 PLN02545 3-hydroxybutyryl-CoA 94.4 0.061 1.3E-06 43.7 4.3 33 14-46 5-38 (295)
442 TIGR03315 Se_ygfK putative sel 94.4 0.11 2.3E-06 49.1 6.2 88 120-219 537-633 (1012)
443 KOG1346 Programmed cell death 94.4 0.087 1.9E-06 44.0 4.9 47 173-221 267-313 (659)
444 PRK04308 murD UDP-N-acetylmura 94.3 0.079 1.7E-06 45.7 5.1 34 13-46 5-39 (445)
445 PRK15057 UDP-glucose 6-dehydro 94.3 0.052 1.1E-06 45.8 3.8 32 15-46 2-33 (388)
446 TIGR02354 thiF_fam2 thiamine b 94.3 0.077 1.7E-06 40.3 4.3 32 13-44 21-54 (200)
447 PRK03369 murD UDP-N-acetylmura 94.3 0.063 1.4E-06 46.9 4.3 32 13-44 12-44 (488)
448 PRK00094 gpsA NAD(P)H-dependen 94.3 0.057 1.2E-06 44.4 3.9 32 14-45 2-34 (325)
449 PRK01710 murD UDP-N-acetylmura 94.2 0.066 1.4E-06 46.4 4.4 33 13-45 14-47 (458)
450 PRK08306 dipicolinate synthase 94.1 0.078 1.7E-06 43.0 4.3 33 13-45 152-185 (296)
451 TIGR00936 ahcY adenosylhomocys 94.1 0.073 1.6E-06 44.9 4.3 34 12-45 194-228 (406)
452 PF00899 ThiF: ThiF family; I 94.1 0.084 1.8E-06 37.3 4.0 33 13-45 2-36 (135)
453 cd01075 NAD_bind_Leu_Phe_Val_D 94.1 0.094 2E-06 39.9 4.4 33 13-45 28-61 (200)
454 PRK11064 wecC UDP-N-acetyl-D-m 94.1 0.06 1.3E-06 45.9 3.7 33 14-46 4-37 (415)
455 PRK14620 NAD(P)H-dependent gly 94.0 0.065 1.4E-06 44.2 3.7 31 15-45 2-33 (326)
456 PF00670 AdoHcyase_NAD: S-aden 94.0 0.076 1.6E-06 38.5 3.5 34 12-45 22-56 (162)
457 PRK06223 malate dehydrogenase; 93.9 0.097 2.1E-06 42.8 4.6 33 14-46 3-37 (307)
458 PLN02695 GDP-D-mannose-3',5'-e 93.9 0.1 2.3E-06 43.8 4.8 41 5-45 13-55 (370)
459 PF02254 TrkA_N: TrkA-N domain 93.8 0.073 1.6E-06 36.4 3.2 31 16-46 1-32 (116)
460 TIGR00561 pntA NAD(P) transhyd 93.8 0.069 1.5E-06 46.4 3.6 34 13-46 164-198 (511)
461 KOG2304 3-hydroxyacyl-CoA dehy 93.8 0.072 1.6E-06 40.5 3.2 35 12-46 10-45 (298)
462 cd05291 HicDH_like L-2-hydroxy 93.8 0.1 2.2E-06 42.6 4.4 33 15-47 2-37 (306)
463 TIGR03026 NDP-sugDHase nucleot 93.8 0.07 1.5E-06 45.5 3.6 32 15-46 2-34 (411)
464 TIGR02853 spore_dpaA dipicolin 93.8 0.089 1.9E-06 42.4 4.0 34 13-46 151-185 (287)
465 PF03446 NAD_binding_2: NAD bi 93.7 0.094 2E-06 38.4 3.7 33 13-45 1-34 (163)
466 PF00056 Ldh_1_N: lactate/mala 93.6 0.13 2.8E-06 36.7 4.3 33 14-46 1-37 (141)
467 PRK05476 S-adenosyl-L-homocyst 93.6 0.11 2.4E-06 44.2 4.3 35 12-46 211-246 (425)
468 PRK04690 murD UDP-N-acetylmura 93.5 0.1 2.2E-06 45.3 4.3 33 13-45 8-41 (468)
469 cd05311 NAD_bind_2_malic_enz N 93.5 0.12 2.5E-06 40.2 4.2 34 12-45 24-61 (226)
470 PRK00141 murD UDP-N-acetylmura 93.4 0.12 2.6E-06 45.0 4.6 34 12-45 14-48 (473)
471 PRK12475 thiamine/molybdopteri 93.3 0.13 2.8E-06 42.5 4.4 33 13-45 24-58 (338)
472 COG0771 MurD UDP-N-acetylmuram 93.3 0.11 2.3E-06 44.5 3.8 35 13-47 7-42 (448)
473 PRK14619 NAD(P)H-dependent gly 93.3 0.15 3.2E-06 41.7 4.6 33 14-46 5-38 (308)
474 PRK07531 bifunctional 3-hydrox 93.3 0.12 2.7E-06 45.1 4.4 33 14-46 5-38 (495)
475 PRK12549 shikimate 5-dehydroge 93.2 0.14 3.1E-06 41.2 4.4 33 13-45 127-161 (284)
476 KOG4716 Thioredoxin reductase 93.2 0.016 3.4E-07 46.8 -1.1 34 14-47 199-233 (503)
477 PLN02353 probable UDP-glucose 93.2 0.12 2.6E-06 44.7 4.1 32 14-45 2-36 (473)
478 PRK08268 3-hydroxy-acyl-CoA de 93.2 0.13 2.9E-06 45.0 4.4 34 13-46 7-41 (507)
479 PRK15116 sulfur acceptor prote 93.2 0.16 3.4E-06 40.4 4.4 35 12-46 29-65 (268)
480 TIGR02964 xanthine_xdhC xanthi 93.1 0.16 3.5E-06 39.9 4.4 34 13-46 100-134 (246)
481 PLN02494 adenosylhomocysteinas 93.1 0.15 3.2E-06 43.8 4.3 33 13-45 254-287 (477)
482 PTZ00117 malate dehydrogenase; 93.1 0.17 3.8E-06 41.5 4.7 35 12-46 4-40 (319)
483 TIGR02356 adenyl_thiF thiazole 93.0 0.18 3.9E-06 38.4 4.4 34 12-45 20-55 (202)
484 cd05293 LDH_1 A subgroup of L- 93.0 0.2 4.2E-06 41.0 4.9 34 13-46 3-39 (312)
485 PRK12809 putative oxidoreducta 93.0 0.26 5.7E-06 44.7 6.1 89 120-219 310-407 (639)
486 PRK05562 precorrin-2 dehydroge 93.0 0.2 4.3E-06 38.6 4.5 33 13-45 25-58 (223)
487 PRK00421 murC UDP-N-acetylmura 92.8 0.16 3.6E-06 44.0 4.5 35 12-46 6-42 (461)
488 COG1893 ApbA Ketopantoate redu 92.8 0.12 2.6E-06 42.1 3.3 33 14-46 1-34 (307)
489 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.7 0.13 2.9E-06 45.0 3.8 33 14-46 6-39 (503)
490 TIGR01915 npdG NADPH-dependent 92.7 0.17 3.6E-06 39.2 3.9 31 15-45 2-34 (219)
491 COG0445 GidA Flavin-dependent 92.7 0.44 9.5E-06 41.5 6.6 52 166-218 103-157 (621)
492 PRK07417 arogenate dehydrogena 92.6 0.13 2.8E-06 41.3 3.4 32 15-46 2-34 (279)
493 PRK12769 putative oxidoreducta 92.6 0.34 7.3E-06 44.1 6.3 89 120-219 327-424 (654)
494 PRK02006 murD UDP-N-acetylmura 92.6 0.18 3.9E-06 44.2 4.5 33 13-45 7-40 (498)
495 PRK10669 putative cation:proto 92.5 0.18 3.9E-06 45.0 4.3 34 13-46 417-451 (558)
496 PRK07502 cyclohexadienyl dehyd 92.5 0.19 4E-06 41.1 4.1 32 14-45 7-41 (307)
497 cd01078 NAD_bind_H4MPT_DH NADP 92.5 0.24 5.2E-06 37.4 4.5 34 12-45 27-62 (194)
498 KOG1439 RAB proteins geranylge 92.5 0.1 2.2E-06 43.2 2.5 43 13-55 4-47 (440)
499 PRK07688 thiamine/molybdopteri 92.4 0.21 4.5E-06 41.4 4.4 33 13-45 24-58 (339)
500 PRK09496 trkA potassium transp 92.4 0.16 3.5E-06 43.9 3.9 31 15-45 2-33 (453)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.9e-36 Score=250.18 Aligned_cols=258 Identities=23% Similarity=0.294 Sum_probs=202.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeec--------------C-C-----------cccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV--------------E-P-----------SFGK 64 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~--------------~-~-----------~~~~ 64 (274)
++||++|||+||+|..+|..+++ |.+|.++|+...+|++.-...... . . .+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999974 888999999977765542221100 0 0 0000
Q ss_pred ceeeecc------------cc--ccccEEEEEeeEEEecCeEEeCC--CeEEecCEEEEccCCCCCCChh---H------
Q 023975 65 RSVINHT------------DY--LVNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPKT---R------ 119 (274)
Q Consensus 65 ~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~li~a~G~~~~~~~~---~------ 119 (274)
.....+. .+ ..+++++.+.....+++.+.... .+++.++++++|||++|..|+. +
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~ 162 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILD 162 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEe
Confidence 0000000 01 12578888888888877777655 4789999999999999876651 1
Q ss_pred ----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 ----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
.+++..+++|+.|+|+|..+. ..|.+|+++.+.++++|.+++++.+.+.+.+++.|+++.+++.++.+
T Consensus 163 s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 163 SSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred chhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 122333556999999999999 78999999999999999999999999999999989999999999999
Q ss_pred ccCCCceeEECCCCc--EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975 190 SVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 267 (274)
Q Consensus 190 ~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~ 267 (274)
+..++.+.+.+++|+ ++++|.|++|+|..||.+-+..+..++.++++|+|.||..++| +.|+|||+|||++.|.+++
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~Lah 319 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPMLAH 319 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcccHh
Confidence 877766778887776 7999999999999999997666666668899999999966776 8999999999998888887
Q ss_pred CCCCC
Q 023975 268 MIFPQ 272 (274)
Q Consensus 268 ~~~~~ 272 (274)
.+.+|
T Consensus 320 ~A~~e 324 (454)
T COG1249 320 VAMAE 324 (454)
T ss_pred HHHHH
Confidence 77655
No 2
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1e-35 Score=253.37 Aligned_cols=253 Identities=22% Similarity=0.303 Sum_probs=189.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------c---------C---Cccccc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------V---------E---PSFGKR 65 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~---------~---~~~~~~ 65 (274)
+|||+||||||+|++||..|+ .|++|+|+|+. .+|+.+...... . . ......
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 589999999999999999998 49999999986 566543211000 0 0 000000
Q ss_pred eeeec------------cccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH-----------
Q 023975 66 SVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------- 120 (274)
Q Consensus 66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------- 120 (274)
..... .+.+ .+++++...+..++.+.+.+ ++.++.||++|+|||+.|..|+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 161 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGFF 161 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhh
Confidence 00000 0001 25677777777777777777 6778999999999999976655321
Q ss_pred ------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975 121 ------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 194 (274)
Q Consensus 121 ------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~ 194 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.|++++.+++|.+++.+++
T Consensus 162 ~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~ 239 (450)
T PRK06116 162 ALEELPKRVAVVGAGYIAVEFAGVLN--GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD 239 (450)
T ss_pred CccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC
Confidence 11223455999999999988 5689999999998888888888999999999999999999999999986544
Q ss_pred c-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975 195 S-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF 270 (274)
Q Consensus 195 ~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~ 270 (274)
. +.+.+.+|+++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+.
T Consensus 240 g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~A~ 315 (450)
T PRK06116 240 GSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELTPVAI 315 (450)
T ss_pred ceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcHHHHH
Confidence 4 6677888889999999999999999886543334446778899999999998 8999999999997665544433
No 3
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.8e-35 Score=251.66 Aligned_cols=256 Identities=25% Similarity=0.299 Sum_probs=191.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC----------------Ccc---ccceeeecc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE----------------PSF---GKRSVINHT 71 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~----------------~~~---~~~~~~~~~ 71 (274)
.+|||+||||||+|+++|+.|+ .|++|+|+|+.+.+|+.+........ ..+ .......+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 4599999999999999999997 49999999998888866532211000 000 000000000
Q ss_pred ------------------cc--ccccEEEEEeeEEEecCe--EEeCCCe--EEecCEEEEccCCCCCCChhH--------
Q 023975 72 ------------------DY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR-------- 119 (274)
Q Consensus 72 ------------------~~--~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~~~li~a~G~~~~~~~~~-------- 119 (274)
+. ..+++++......++.+. +...++. .+.||++|+|||+.|..|+..
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~ 163 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY 163 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEE
Confidence 00 124666666666566553 4444553 789999999999997765411
Q ss_pred -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
. +++..+++|.+++|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+++.|++++.++++++
T Consensus 164 ~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 164 DSDSILSLDHLPRSLIIYGAGVIGCEYASIFA--ALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cHHHhhchhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 1 22333456999999999998 6789999999999999988999999999999999999999999999
Q ss_pred eccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 268 (274)
Q Consensus 189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~ 268 (274)
++.+++.+.+++.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...+.
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~~~ 320 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLASA 320 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccHhH
Confidence 98666666777778889999999999999999886543444446778899999999998 89999999999987766544
Q ss_pred CC
Q 023975 269 IF 270 (274)
Q Consensus 269 ~~ 270 (274)
+.
T Consensus 321 A~ 322 (461)
T PRK05249 321 SM 322 (461)
T ss_pred HH
Confidence 43
No 4
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.9e-35 Score=248.13 Aligned_cols=256 Identities=23% Similarity=0.279 Sum_probs=188.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-ceeeccceeeecC----------Ccccc-----cee---ee---
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAMVE----------PSFGK-----RSV---IN--- 69 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~-~g~~~~~~~~~~~----------~~~~~-----~~~---~~--- 69 (274)
.|||+||||||+|++||..|+ .|++|+|+|+.+. +|+.+........ ..+.. +.. ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 489999999999999999998 4999999999763 6765532111100 00000 000 00
Q ss_pred ccc--cccccEEEEEeeEEEecC--eEEeCCCe-EEecCEEEEccCCCCCCChhHH----------H----------HHH
Q 023975 70 HTD--YLVNGRIVASPAINITEN--EVLTAEGR-RVVYDYLVIATGHKDPVPKTRT----------E----------RLN 124 (274)
Q Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~li~a~G~~~~~~~~~~----------~----------~~~ 124 (274)
... ...+++++.+....++.+ .+.+.++. ++.||++|+|||+.|..|+.+. . ++.
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ 162 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG 162 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence 001 112567777776666655 44455664 6999999999999865544221 1 112
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 204 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 204 (274)
.+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.||++++++.+++++.+++.+.+.++++
T Consensus 163 ViGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g- 239 (441)
T PRK08010 163 ILGGGYIGVEFASMFA--NFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA- 239 (441)
T ss_pred EECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence 2344889999999998 5789999999999888888888999999999999999999999999987665566665555
Q ss_pred EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975 205 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ 272 (274)
Q Consensus 205 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~ 272 (274)
++.+|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+.+.+.+|
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a~~~ 306 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYISLDD 306 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHHHHH
Confidence 5899999999999999887654444446778899999999999 899999999999987766655443
No 5
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.6e-35 Score=250.63 Aligned_cols=257 Identities=21% Similarity=0.221 Sum_probs=190.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcC---------CCCceeeccceeee----------------------cC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP---------KEYFEITWASLRAM----------------------VE 59 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~---------~~~~g~~~~~~~~~----------------------~~ 59 (274)
.+||++||||||+|+.+|..++ .|.+|+|+|+ ...+|+.+...... ..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3689999999999999999997 5999999996 24566554221000 00
Q ss_pred ----Cccccceeeec------------ccc--ccccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCCh
Q 023975 60 ----PSFGKRSVINH------------TDY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 60 ----~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~ 117 (274)
..+........ ... ..+++++...+..++.+ .+.+.+|. .+.||+||+|||+.|..|.
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ 183 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN 183 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCC
Confidence 00000000000 000 13577788877777766 44555664 5889999999999866544
Q ss_pred hHH-----------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEE
Q 023975 118 TRT-----------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 180 (274)
Q Consensus 118 ~~~-----------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 180 (274)
.+. +++..+++|.+++|+|..+. ..+.+|+++.+.+.+++.+++.+...+.+.+++.||++
T Consensus 184 ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i 261 (499)
T PLN02507 184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWR--GMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINL 261 (499)
T ss_pred CCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEE
Confidence 221 11223445999999999988 67899999999988888888889999999999999999
Q ss_pred EcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975 181 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260 (274)
Q Consensus 181 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~ 260 (274)
+.++.|++++.+++.+.+.+.+|+++++|.|++++|+.|+.+++.....++.++++|++.||++++| +.|+|||+|||+
T Consensus 262 ~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~ 340 (499)
T PLN02507 262 HPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVT 340 (499)
T ss_pred EeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcC
Confidence 9999999998666667777888889999999999999999887543333446778899999999998 899999999999
Q ss_pred CCCCCCCCCCC
Q 023975 261 DIRVSASMIFP 271 (274)
Q Consensus 261 ~~~~~~~~~~~ 271 (274)
+.+...+.+..
T Consensus 341 ~~~~l~~~A~~ 351 (499)
T PLN02507 341 NRINLTPVALM 351 (499)
T ss_pred CCCccHHHHHH
Confidence 87766554443
No 6
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.2e-35 Score=249.61 Aligned_cols=256 Identities=19% Similarity=0.211 Sum_probs=188.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec------------------------C-Cccccce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV------------------------E-PSFGKRS 66 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~------------------------~-~~~~~~~ 66 (274)
+|||+||||||+|++||..++ +|++|+|+|+. .+|+......... . ..+....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999997 59999999985 5665432110000 0 0000000
Q ss_pred e--------ee----ccccc--cccEEEEEeeEEEecCeEEe-CCCeEEecCEEEEccCCCCCCChhHH-------H---
Q 023975 67 V--------IN----HTDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRT-------E--- 121 (274)
Q Consensus 67 ~--------~~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~li~a~G~~~~~~~~~~-------~--- 121 (274)
. .. ....+ .+++++...+..++.+.+.. .++..+.||++|+|||+.|..|+.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~ 160 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF 160 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence 0 00 00111 25677777776676654433 45678999999999999976554221 1
Q ss_pred -------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975 122 -------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 194 (274)
Q Consensus 122 -------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~ 194 (274)
++..+++|.+++|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+++.|++++.++.+.+++.+++
T Consensus 161 ~l~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 161 HLPTLPKSILILGGGYIAVEFAGIWR--GLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 1122345899999999988 6789999999999888888888888999999999999999999999986656
Q ss_pred ceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975 195 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ 272 (274)
Q Consensus 195 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~ 272 (274)
...+.+.+|+++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+..|
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~A~~~ 315 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTPVAIME 315 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchhHHHHH
Confidence 66777778889999999999999999876543334446778899999999999 899999999999876666554433
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.9e-35 Score=246.98 Aligned_cols=253 Identities=19% Similarity=0.194 Sum_probs=187.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec----------------------CCc----cccc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV----------------------EPS----FGKR 65 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~----------------------~~~----~~~~ 65 (274)
+|||+||||||+|++||..|+ .|++|+|+||. .+|+.+....... ... ....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999998 59999999996 4665432110000 000 0000
Q ss_pred eeee------------ccccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCC-hhHH-------HH-
Q 023975 66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRT-------ER- 122 (274)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~-~~~~-------~~- 122 (274)
.... ....+ .+++++.......+.+.+.. ++..+.||++|+|||+.|..| +.+. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~ 159 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF 159 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence 0000 00001 24666666665555555655 466899999999999997666 3221 12
Q ss_pred ---------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975 123 ---------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 193 (274)
Q Consensus 123 ---------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 193 (274)
+..+++|.+|+|+|..+. ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||++++++.+++++.+.
T Consensus 160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~ 237 (450)
T TIGR01421 160 FALEELPKRVVIVGAGYIAVELAGVLH--GLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237 (450)
T ss_pred hCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence 222355999999999998 578999999999998888899999999999999999999999999997654
Q ss_pred Cc-eeEECCCC-cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975 194 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF 270 (274)
Q Consensus 194 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~ 270 (274)
+. ..+.+++| +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+||++|||++.+...+.+.
T Consensus 238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~~A~ 315 (450)
T TIGR01421 238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTPVAI 315 (450)
T ss_pred CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHHHHH
Confidence 33 56777777 57999999999999999987544444456788899999999998 8999999999998776655443
No 8
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-34 Score=245.43 Aligned_cols=255 Identities=17% Similarity=0.182 Sum_probs=188.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR 65 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~ 65 (274)
.+|||+||||||+|+++|..|++ |++|+|+|+.+.+|+.+........ ..+...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35999999999999999999985 9999999998777764421110000 000000
Q ss_pred eeeecc------------cc--ccccEEEEEeeEEEecCeEE--eCCC--eEEecCEEEEccCCCCC-CChhH-------
Q 023975 66 SVINHT------------DY--LVNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR------- 119 (274)
Q Consensus 66 ~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~~~li~a~G~~~~-~~~~~------- 119 (274)
....+. .. ..+++++.......+.+.+. ..++ .++.||++|+|||+.|. .|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~ 162 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW 162 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence 000000 00 12577888777777766443 3345 47899999999999875 33211
Q ss_pred -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
. +++..+++|.+|+|+|..+. ..+.+|+++.+.+.+++.+++.+...+.+.+++. +++++++.++.
T Consensus 163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYH--RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred ChHHhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 1 12233455999999999998 6789999999999999988999999999999888 99999999999
Q ss_pred eccCCCceeEECCC--C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 189 DSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 189 i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
++.+++.+.+.+.+ + +++++|.||+++|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.|.
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~ 318 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM 318 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence 98666666665543 2 46999999999999999987655555557788999999999999 8999999999998776
Q ss_pred CCCCCC
Q 023975 265 SASMIF 270 (274)
Q Consensus 265 ~~~~~~ 270 (274)
..+.+.
T Consensus 319 la~~A~ 324 (471)
T PRK06467 319 LAHKGV 324 (471)
T ss_pred cHHHHH
Confidence 554443
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.9e-34 Score=243.82 Aligned_cols=254 Identities=21% Similarity=0.244 Sum_probs=183.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------------cC------Ccccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------------VE------PSFGK 64 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------------~~------~~~~~ 64 (274)
.++||+||||||+|+++|..|+ .|++|+|+|+.. +|+.+...... .. .....
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 4599999999999999999998 499999999864 44432211100 00 00000
Q ss_pred ceee------------eccccc---cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH---------
Q 023975 65 RSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------- 120 (274)
Q Consensus 65 ~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~--------- 120 (274)
.... ....++ .+++++.......+.+.+.. ++.++.||++|+|||+.|..|+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~ 161 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLTN 161 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcc
Confidence 0000 001111 25677666666666666666 4567999999999999977655221
Q ss_pred ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.|+++++++.+.+++
T Consensus 162 ~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 162 ETIFSLDELPEHLVIIGGGYIGLEFAQMFR--RFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE 239 (463)
T ss_pred hHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 11223445999999999998 568899999999998888888889999999999999999999999998
Q ss_pred cCCCceeEEC--C-CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975 191 VSEGSDTYLT--S-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 267 (274)
Q Consensus 191 ~~~~~~~v~~--~-~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~ 267 (274)
.+++...+.+ . +++++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+
T Consensus 240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~~ 318 (463)
T PRK06370 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFTH 318 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccHH
Confidence 7655544433 2 3457999999999999999874422223336778899999999999 8999999999998776654
Q ss_pred CCC
Q 023975 268 MIF 270 (274)
Q Consensus 268 ~~~ 270 (274)
.+.
T Consensus 319 ~A~ 321 (463)
T PRK06370 319 TAY 321 (463)
T ss_pred HHH
Confidence 433
No 10
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=235.89 Aligned_cols=245 Identities=26% Similarity=0.319 Sum_probs=182.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
.+++|+|||||++|+.+|..|.+ +++|+|||+++++.+.+.. ......... .....+..+.+ .+++++.+.+..+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLL-PQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhH-HHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 34799999999999999999975 7999999999886544321 111111111 11111111111 2467788887777
Q ss_pred ec--CeEEe----------CCCeEEecCEEEEccCCCCCC---ChhHH---------------H----------------
Q 023975 88 TE--NEVLT----------AEGRRVVYDYLVIATGHKDPV---PKTRT---------------E---------------- 121 (274)
Q Consensus 88 ~~--~~v~~----------~~~~~~~~~~li~a~G~~~~~---~~~~~---------------~---------------- 121 (274)
+. +.+.+ +++.++.||+||+|||+.+.. |+... +
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 64 35655 466789999999999998543 43210 0
Q ss_pred -------HHHHccCCchhhhHHHHhhhhC------------CCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975 122 -------RLNQYQAGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 182 (274)
Q Consensus 122 -------~~~~~~~g~~~~e~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 182 (274)
.+..+++|.+|+|+|.++.+.. .+.+++++++.+.+++.+++.+.+.+.+.+++.||+++.
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~ 247 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT 247 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 1122445899999999887421 367899999999888888888999999999999999999
Q ss_pred CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975 183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262 (274)
Q Consensus 183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~ 262 (274)
++.|.++..+ .+.+++|+++++|.+|+++|..|+ +++...++ .++++|++.||++++++++|+|||+|||+..
T Consensus 248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 9999998643 467888999999999999999986 56665554 5677899999999997689999999999986
Q ss_pred CC
Q 023975 263 RV 264 (274)
Q Consensus 263 ~~ 264 (274)
+.
T Consensus 321 ~~ 322 (424)
T PTZ00318 321 EE 322 (424)
T ss_pred CC
Confidence 43
No 11
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.6e-34 Score=241.67 Aligned_cols=254 Identities=22% Similarity=0.318 Sum_probs=188.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCceeecccee------------------e----ecC---Ccccc---
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR------------------A----MVE---PSFGK--- 64 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~~~~~~~------------------~----~~~---~~~~~--- 64 (274)
+||++||||||+|..+|..+ .|.+|+|+|+.. +|+..-... . .+. .....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 38999999999999988664 599999999864 443221100 0 000 00000
Q ss_pred --------ceeee-cccc----ccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhH---------HH-
Q 023975 65 --------RSVIN-HTDY----LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TE- 121 (274)
Q Consensus 65 --------~~~~~-~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------~~- 121 (274)
..+.. .... ..+++++.......+++.|.+.++.++.||++|+|||+.|..|+.+ ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 158 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT 158 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence 00000 0111 1367788888877888888888787899999999999997665522 11
Q ss_pred ---------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975 122 ---------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS 192 (274)
Q Consensus 122 ---------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 192 (274)
++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++++.+.+.+.+ +.++++++++++++++.+
T Consensus 159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 159 IMRLPELPESLVIVGGGFIAAEFAHVFS--ALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred HhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence 1122345999999999998 5789999999999988888888887776654 568999999999999866
Q ss_pred CCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975 193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ 272 (274)
Q Consensus 193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~ 272 (274)
++.+.+.+.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+++.+..|
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~A~~~ 314 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHVANHE 314 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhHHHHH
Confidence 6666777778889999999999999999998764445557778899999999998 899999999999887666554433
No 12
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7e-34 Score=243.03 Aligned_cols=253 Identities=22% Similarity=0.249 Sum_probs=185.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR 65 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~ 65 (274)
..|||+||||||+|++||..|+ .|++|+|+|+.. +|+.+........ ..+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 4589999999999999999997 599999999987 7765432111000 000000
Q ss_pred eeeec------------ccc--ccccEEEEEeeEEEecCeEEeC---CCeEEecCEEEEccCCCCCCCh-hH--------
Q 023975 66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA---EGRRVVYDYLVIATGHKDPVPK-TR-------- 119 (274)
Q Consensus 66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~li~a~G~~~~~~~-~~-------- 119 (274)
....+ ... ..+++++...+..++.+.+... ++..+.||++|+|||+.|..|+ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 00001 001 1256777777766666644442 2468999999999999975432 21
Q ss_pred H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
. +++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.|+++++++.|.++
T Consensus 162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYA--SLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred chHhhCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 0 12233445999999999998 56889999999999888888889999999999999999999999999
Q ss_pred ccCCCceeEECCCC---cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 190 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 190 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+.+++.+.+.+.++ +++++|.||+|+|..|+.+++.....++.++ +|++.||++++| +.|+||++|||++.+...
T Consensus 240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~ 317 (462)
T PRK06416 240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPMLA 317 (462)
T ss_pred EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcchH
Confidence 87666666666665 6799999999999999988763233333566 889999999998 899999999999766544
Q ss_pred CCC
Q 023975 267 SMI 269 (274)
Q Consensus 267 ~~~ 269 (274)
..+
T Consensus 318 ~~A 320 (462)
T PRK06416 318 HKA 320 (462)
T ss_pred HHH
Confidence 433
No 13
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.3e-33 Score=240.24 Aligned_cols=260 Identities=20% Similarity=0.217 Sum_probs=190.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCC--------CCceeeccceee---------------------e-cC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPK--------EYFEITWASLRA---------------------M-VE 59 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~--------~~~g~~~~~~~~---------------------~-~~ 59 (274)
++|||+||||||+|..||..++ . |.+|+|+|+. ..+|++.-.... + +.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 4699999999999999999987 4 8999999984 456654311100 0 00
Q ss_pred -----Cccccceeeec------------cccc---cccEEEEEeeEEEecCeEEeCC--------CeEEecCEEEEccCC
Q 023975 60 -----PSFGKRSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH 111 (274)
Q Consensus 60 -----~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~li~a~G~ 111 (274)
..........+ ...+ .+++++.+.....+++.+.... ...+.||++|+|||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 00000000000 0112 3678888888777777655431 347999999999999
Q ss_pred CCCCChhHH-----------------HHHHHccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCCcCChhHHHHHHHHH
Q 023975 112 KDPVPKTRT-----------------ERLNQYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 173 (274)
Q Consensus 112 ~~~~~~~~~-----------------~~~~~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (274)
.|..|+++. +.+..+++|.+|+|+|..+... ..+.+|+++.+.+.+++.+++.+.+.+.+.+
T Consensus 162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L 241 (486)
T TIGR01423 162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241 (486)
T ss_pred CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence 976655321 1122344599999999877521 2378999999999999989999999999999
Q ss_pred HhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCC
Q 023975 174 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN 252 (274)
Q Consensus 174 ~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 252 (274)
++.|+++++++.+++++.+++. ..+.+.+|+++++|.|++|+|..|+..++.....++.++++|++.||++++| +.|+
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~ 320 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN 320 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence 9999999999999999765443 5677777889999999999999999887654444446778899999999998 8999
Q ss_pred eEEeccccCCCCCCCCCCCC
Q 023975 253 IFAIGDITDIRVSASMIFPQ 272 (274)
Q Consensus 253 i~~~Gd~~~~~~~~~~~~~~ 272 (274)
|||+|||++.+...+.+..|
T Consensus 321 IyA~GDv~~~~~l~~~A~~q 340 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPVAINE 340 (486)
T ss_pred EEEeeecCCCcccHHHHHHH
Confidence 99999999987766655443
No 14
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=9.8e-33 Score=224.48 Aligned_cols=246 Identities=31% Similarity=0.418 Sum_probs=187.8
Q ss_pred CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc---cccEEEEEeeEE
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN 86 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 86 (274)
+++|+|||||++|+.+|..|.+ +.+++++|++++.-..+-................++.+.+ .+++++.+++..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 4799999999999999999974 3899999999886544322221111111222223333322 257888888887
Q ss_pred Eec--CeEEeCCCeEEecCEEEEccCCCCCCChhH------------------HHH-------------------HHHcc
Q 023975 87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------------TER-------------------LNQYQ 127 (274)
Q Consensus 87 ~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------------~~~-------------------~~~~~ 127 (274)
++. +.|.+.++..+.||+||+|+|+.+..++.+ ..+ +...+
T Consensus 83 ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvG 162 (405)
T COG1252 83 IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVG 162 (405)
T ss_pred EcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEEC
Confidence 764 489998878899999999999985544311 000 11234
Q ss_pred CCchhhhHHHHhhhhCC-----------CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce
Q 023975 128 AGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD 196 (274)
Q Consensus 128 ~g~~~~e~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~ 196 (274)
+|.+|+|+|.+|.+... ..+++++++.++++|.+++.+.+...+.|++.||++.+++.|++++.+
T Consensus 163 gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---- 238 (405)
T COG1252 163 GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD---- 238 (405)
T ss_pred CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----
Confidence 49999999998875321 138899999999999999999999999999999999999999999854
Q ss_pred eEECCCCc-EEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 197 TYLTSTGD-TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 197 ~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
.|.+.+|+ +|++|.+|+|+|.++ +++.+. .++ ..+..|++.||++++++++++||++|||+..+..
T Consensus 239 ~v~~~~g~~~I~~~tvvWaaGv~a-~~~~~~l~~~--e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 239 GVTLKDGEEEIPADTVVWAAGVRA-SPLLKDLSGL--ETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred cEEEccCCeeEecCEEEEcCCCcC-ChhhhhcChh--hhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 37777777 599999999999998 555655 243 5677899999999999999999999999988774
No 15
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.7e-34 Score=242.72 Aligned_cols=252 Identities=24% Similarity=0.284 Sum_probs=184.1
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------cC-C---------ccccceee
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------VE-P---------SFGKRSVI 68 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~~-~---------~~~~~~~~ 68 (274)
|||+||||||+|+++|..|+ +|.+|+|+|+.. +|+.+...... .. . ........
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999998 599999999976 66554221000 00 0 00000000
Q ss_pred e-------------ccccc--cccEEEEEeeEEEecCeEEeCCC-eEEecCEEEEccCCCCCCChhHH------------
Q 023975 69 N-------------HTDYL--VNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPKTRT------------ 120 (274)
Q Consensus 69 ~-------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~li~a~G~~~~~~~~~~------------ 120 (274)
. ....+ .+++++.+.....+.+.+...++ ..+.+|++|+|||+.|..|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 0 01111 14677777776666777777665 36789999999999976554221
Q ss_pred -------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975 121 -------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 193 (274)
Q Consensus 121 -------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 193 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+...+.+.+++.||+++++++|++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFA--RLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 12223455899999999998 568999999999998888888899999999999999999999999998765
Q ss_pred CceeEECC---CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975 194 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI 269 (274)
Q Consensus 194 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~ 269 (274)
+...+.+. +++++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~~~A 315 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLEYVA 315 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccHhHH
Confidence 55555443 2358999999999999999884322333345678899999999999 899999999999876654443
No 16
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.3e-33 Score=238.25 Aligned_cols=252 Identities=18% Similarity=0.222 Sum_probs=181.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-ceeeccceeeecCC--------ccccceeee------------c
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAMVEP--------SFGKRSVIN------------H 70 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~-~g~~~~~~~~~~~~--------~~~~~~~~~------------~ 70 (274)
.|||+||||||+|++||..|+ +|++|+|+||.+. +|+........... ......... .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999997 5999999999864 56543211100000 000000000 0
Q ss_pred cccc--cccEEEEEeeEEEecCeEEeCC---CeEEecCEEEEccCCCCCCChhHH----------H----------HHHH
Q 023975 71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTRT----------E----------RLNQ 125 (274)
Q Consensus 71 ~~~~--~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~li~a~G~~~~~~~~~~----------~----------~~~~ 125 (274)
.+.+ .+++++......++.+.+.... ...+.||++|+|||+.|..|+.+. . ++..
T Consensus 83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI 162 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI 162 (438)
T ss_pred HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence 0111 2567777766666666555432 347899999999999865443211 1 1122
Q ss_pred ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcE
Q 023975 126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT 205 (274)
Q Consensus 126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~ 205 (274)
+++|..++|+|..+. ..+.+|+++.+.+.+++..++.+...+.+.+++.|+++++++++++++.+++.+.+. .++++
T Consensus 163 IGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~ 239 (438)
T PRK07251 163 IGGGNIGLEFAGLYN--KLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET 239 (438)
T ss_pred ECCCHHHHHHHHHHH--HcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence 344899999999998 578999999999998888888888888899999999999999999998655555444 45678
Q ss_pred EeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975 206 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 268 (274)
Q Consensus 206 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~ 268 (274)
+++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+.....
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~~ 301 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTYI 301 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHhH
Confidence 999999999999999876544333445677899999999999 89999999999987655443
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=7.8e-33 Score=236.43 Aligned_cols=254 Identities=22% Similarity=0.261 Sum_probs=184.3
Q ss_pred CCCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee-----------------------cC---Cc
Q 023975 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----------------------VE---PS 61 (274)
Q Consensus 9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~-----------------------~~---~~ 61 (274)
|...++||+||||||+|+++|..|++ |.+|+|||+. .+|++|..-... +. +.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 45568999999999999999999985 9999999986 466554321000 00 00
Q ss_pred cccceeee-------------ccc---cccccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-
Q 023975 62 FGKRSVIN-------------HTD---YLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT- 120 (274)
Q Consensus 62 ~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~- 120 (274)
........ +.. ...+++++.+.+..++.+ .+.+.++ .+++||++|+|||+.|..|+++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 160 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL 160 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence 00000000 000 112567777777777655 5555565 47999999999999976554221
Q ss_pred ------------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975 121 ------------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 182 (274)
Q Consensus 121 ------------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 182 (274)
+++..+++|.+++|+|..+. ..+.+++++.+ +.+++..++.+.+.+.+.+++.||+++.
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~--~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~ 237 (468)
T PRK14694 161 AETPYLTSTSALELDHIPERLLVIGASVVALELAQAFA--RLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLK 237 (468)
T ss_pred CCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 11222344899999999998 56889999986 4667777888999999999999999999
Q ss_pred CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975 183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262 (274)
Q Consensus 183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~ 262 (274)
++.+.+++.+++.+.+.+.++ ++++|.||+|+|..|+.+++....+++.. ++|++.||++++| +.|+|||+|||++.
T Consensus 238 ~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~ 314 (468)
T PRK14694 238 QTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ 314 (468)
T ss_pred CCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC
Confidence 999999986665555655544 69999999999999998876443344444 5789999999999 89999999999987
Q ss_pred CCCCCCC
Q 023975 263 RVSASMI 269 (274)
Q Consensus 263 ~~~~~~~ 269 (274)
+...+.+
T Consensus 315 ~~~~~~A 321 (468)
T PRK14694 315 PQFVYVA 321 (468)
T ss_pred cccHHHH
Confidence 7665444
No 18
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=235.88 Aligned_cols=254 Identities=20% Similarity=0.235 Sum_probs=186.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee--------------c-C-C---------ccccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------V-E-P---------SFGKR 65 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~--------------~-~-~---------~~~~~ 65 (274)
.++|++|||||++|+++|..|++ |.+|+++|+.+.+|+.|...... . . + .+...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 46899999999999999999985 99999999987888776432100 0 0 0 00000
Q ss_pred eee-------------eccccc---cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-----
Q 023975 66 SVI-------------NHTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT----- 120 (274)
Q Consensus 66 ~~~-------------~~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~----- 120 (274)
... .+...+ .+++++.+.....+.+ .+...++ .++.||++|+|||+.|..|+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~ 174 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP 174 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence 000 000111 1456666666556655 3444455 36899999999999976654321
Q ss_pred --------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975 121 --------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 186 (274)
Q Consensus 121 --------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 186 (274)
+++..+++|.+++|+|..+. ..+.+|+++.+. .+++..++.+.+.+.+.+++.||++++++++
T Consensus 175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYA--RLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred eecchHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 12223445999999999998 578999999874 5667778888999999999999999999999
Q ss_pred eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+.++.+++.+.+.+.++ ++++|.|++|+|..|+..++.....++.++++|++.||++++| +.|+|||+|||++.|...
T Consensus 252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~ 329 (479)
T PRK14727 252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV 329 (479)
T ss_pred EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence 99986666666666655 6999999999999999887644444446778899999999999 899999999999887765
Q ss_pred CCCC
Q 023975 267 SMIF 270 (274)
Q Consensus 267 ~~~~ 270 (274)
+.+.
T Consensus 330 ~~A~ 333 (479)
T PRK14727 330 YVAA 333 (479)
T ss_pred hHHH
Confidence 5443
No 19
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=233.32 Aligned_cols=240 Identities=16% Similarity=0.271 Sum_probs=179.9
Q ss_pred CcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeec--cccc--cccEEE-EEee
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPA 84 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~ 84 (274)
++|+|||||++|+++|..|+ ++++|+|+|+++.+++....+......... ....... ..+. .++++. ...+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 58999999999999999996 378999999998877554333333221111 1111111 1121 245553 3455
Q ss_pred EEEec--CeEEeCCC-----eEEecCEEEEccCCCCCCChhH------------HH------------HHHHccCCchhh
Q 023975 85 INITE--NEVLTAEG-----RRVVYDYLVIATGHKDPVPKTR------------TE------------RLNQYQAGPTGV 133 (274)
Q Consensus 85 ~~~~~--~~v~~~~~-----~~~~~~~li~a~G~~~~~~~~~------------~~------------~~~~~~~g~~~~ 133 (274)
..++. +.+.+.++ .++.||++|+|||+.|..|+.+ .. ++..+++|.+|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 55553 45555432 2468999999999998766532 11 112244599999
Q ss_pred hHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEE
Q 023975 134 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL 213 (274)
Q Consensus 134 e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~ 213 (274)
|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.+++++. ..+.+++|+++++|.|++
T Consensus 162 E~A~~l~--~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~ 235 (438)
T PRK13512 162 EVLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE 235 (438)
T ss_pred HHHHHHH--hCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence 9999998 6789999999999888888888999999999999999999999999863 246667788899999999
Q ss_pred cccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975 214 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262 (274)
Q Consensus 214 a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~ 262 (274)
|+|..|+.+++...++ .++++|++.||++++| +.|+|||+|||++.
T Consensus 236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~ 281 (438)
T PRK13512 236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITS 281 (438)
T ss_pred CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEe
Confidence 9999999998877665 5677899999999998 89999999999974
No 20
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=9.4e-33 Score=234.46 Aligned_cols=253 Identities=22% Similarity=0.316 Sum_probs=186.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCceeecccee-----------------------eec-C-Cccc----
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR-----------------------AMV-E-PSFG---- 63 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~~~~~~~-----------------------~~~-~-~~~~---- 63 (274)
+||++|||+||+|..+|..+ .|.+|+++|+.. +|++.-... ... . ....
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 58999999999999987554 599999999854 443321000 000 0 0000
Q ss_pred --------cceeeec-ccc-c----cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChh-H--------H
Q 023975 64 --------KRSVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-R--------T 120 (274)
Q Consensus 64 --------~~~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~-~--------~ 120 (274)
....... ..+ . .+++++.......+.+.+.+.++.+++||++|+|||+.|..|+. . .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~ 159 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN 159 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence 0000000 111 1 46777777777777778888778789999999999999876651 1 1
Q ss_pred ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+ +.++++++++.|++++
T Consensus 160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~ 236 (452)
T TIGR03452 160 EDIMRLPELPESLVIVGGGYIAAEFAHVFS--ALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVE 236 (452)
T ss_pred HHHHhhhhcCCcEEEECCCHHHHHHHHHHH--hCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEE
Confidence 11222345999999999998 6789999999998888878888887777655 4689999999999998
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF 270 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~ 270 (274)
.+++.+.+.+.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+.+.+.
T Consensus 237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~A~ 315 (452)
T TIGR03452 237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKHVAN 315 (452)
T ss_pred EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChhHHH
Confidence 766666777778889999999999999999988655444446778899999999998 8999999999998876665544
Q ss_pred C
Q 023975 271 P 271 (274)
Q Consensus 271 ~ 271 (274)
.
T Consensus 316 ~ 316 (452)
T TIGR03452 316 A 316 (452)
T ss_pred H
Confidence 3
No 21
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=240.03 Aligned_cols=252 Identities=23% Similarity=0.264 Sum_probs=184.3
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee-----------------------ec---CCccccc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MV---EPSFGKR 65 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~-----------------------~~---~~~~~~~ 65 (274)
.|||+||||||+|+++|..|++ |.+|+|||++ .+|+.|..... .+ .+.....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 5899999999999999999985 9999999997 67766532100 00 0000000
Q ss_pred eeee-------------ccccc---cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-----
Q 023975 66 SVIN-------------HTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT----- 120 (274)
Q Consensus 66 ~~~~-------------~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~----- 120 (274)
.... ....+ .+++++.+.+...+.+ .+.+.++ .++.||++|+|||+.|..|+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~ 256 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETP 256 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccc
Confidence 0000 00011 1467777777666665 3444455 36899999999999976554221
Q ss_pred --------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975 121 --------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 186 (274)
Q Consensus 121 --------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 186 (274)
+++..+++|.+|+|+|..+. ..+.+|+++.+. .+++..++.+...+.+.+++.||++++++.+
T Consensus 257 ~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 257 YWTSTEALVSDTIPERLAVIGSSVVALELAQAFA--RLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred eEccHHHhhcccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 12233455999999999998 578999999885 4566678889999999999999999999999
Q ss_pred eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
++++.+++.+.+.++++ ++.+|.|++|+|..|+..++.....++.++++|++.||++++| +.|+|||+|||++.+...
T Consensus 334 ~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~~ 411 (561)
T PRK13748 334 SQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQFV 411 (561)
T ss_pred EEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccch
Confidence 99986665566666555 6999999999999999887543334446778899999999999 899999999999887665
Q ss_pred CCCC
Q 023975 267 SMIF 270 (274)
Q Consensus 267 ~~~~ 270 (274)
+.+.
T Consensus 412 ~~A~ 415 (561)
T PRK13748 412 YVAA 415 (561)
T ss_pred hHHH
Confidence 5443
No 22
>PLN02546 glutathione reductase
Probab=100.00 E-value=9.6e-33 Score=237.50 Aligned_cols=255 Identities=18% Similarity=0.214 Sum_probs=185.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCceeeccceee---------------------e-c--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWASLRA---------------------M-V-- 58 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~---------~~~g~~~~~~~~---------------------~-~-- 58 (274)
+|||+||||||+|+.+|..++ .|.+|+|+|+. ..+|++.-.... + +
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999997 59999999962 334433211100 0 0
Q ss_pred --CCccccceeee------------ccccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH--
Q 023975 59 --EPSFGKRSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-- 120 (274)
Q Consensus 59 --~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~-- 120 (274)
...++...... +...+ .+++++.+....++.+.+.. +|..+.||++|+|||+.|..|+++.
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~~ 237 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGIE 237 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCChh
Confidence 00000000000 01111 25788887777777776766 5778999999999999976654321
Q ss_pred ---------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975 121 ---------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER 185 (274)
Q Consensus 121 ---------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~ 185 (274)
+.+..+++|.+++|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.
T Consensus 238 ~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~--~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~ 315 (558)
T PLN02546 238 HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFN--GLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES 315 (558)
T ss_pred hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHH--hcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence 11222345899999999998 5688999999999888888998999999999999999999999
Q ss_pred eeeeccCC-CceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 186 VNLDSVSE-GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 186 v~~i~~~~-~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
+.+++..+ +.+.+.+.+++...+|.||+++|..|+.+++.....++.++++|+|.||++++| +.|+|||+|||++.+.
T Consensus 316 v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~~ 394 (558)
T PLN02546 316 PQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRIN 394 (558)
T ss_pred EEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCcc
Confidence 99997543 334555555555568999999999999987533333446778899999999999 8999999999998776
Q ss_pred CCCCCCC
Q 023975 265 SASMIFP 271 (274)
Q Consensus 265 ~~~~~~~ 271 (274)
..+.+..
T Consensus 395 l~~~A~~ 401 (558)
T PLN02546 395 LTPVALM 401 (558)
T ss_pred cHHHHHH
Confidence 6554443
No 23
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-33 Score=237.04 Aligned_cols=254 Identities=20% Similarity=0.222 Sum_probs=179.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC--------------C---cc--ccceeeecc-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE--------------P---SF--GKRSVINHT- 71 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~--------------~---~~--~~~~~~~~~- 71 (274)
+|||+||||||+|++||..|+ .|.+|+|+|++ .+|+.+........ . .+ .......+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 489999999999999999997 49999999986 34433221110000 0 00 000000000
Q ss_pred ----------------cc---ccccEEEEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCCCCC-ChhH-------H
Q 023975 72 ----------------DY---LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV-PKTR-------T 120 (274)
Q Consensus 72 ----------------~~---~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~~~~-~~~~-------~ 120 (274)
.+ ..+++.+.......+.+.+.. .++ .+++||++|+|||+.|.. |+.+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~ 162 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence 00 013455555555555554333 344 468999999999998754 3211 0
Q ss_pred ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+...+.+.+++.||+++++++|++++
T Consensus 163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 163 EEQILSRELPKSIVIAGAGAIGMEFAYVLK--NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID 240 (466)
T ss_pred HHHhccccCCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 11223445999999999998 568899999999998888888899999999999999999999999998
Q ss_pred cCCCceeEECC--CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 191 VSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 191 ~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
.+++.+.+.+. +| +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...
T Consensus 241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~ 319 (466)
T PRK07818 241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLA 319 (466)
T ss_pred EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccH
Confidence 66555555443 56 37999999999999999886433333345677899999999999 899999999999876555
Q ss_pred CCCC
Q 023975 267 SMIF 270 (274)
Q Consensus 267 ~~~~ 270 (274)
+.+.
T Consensus 320 ~~A~ 323 (466)
T PRK07818 320 HVAE 323 (466)
T ss_pred hHHH
Confidence 4443
No 24
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.3e-32 Score=246.34 Aligned_cols=248 Identities=18% Similarity=0.266 Sum_probs=189.8
Q ss_pred CcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeE
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI 85 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 85 (274)
++|+|||+|++|+.+|..|. .+++|+||++++++.+....+...+.............+++ .+++++.. .+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 58999999999999998885 25899999999988765544444333221112222222222 25666654 345
Q ss_pred EEec--CeEEeCCCeEEecCEEEEccCCCCCCChhH------------HH---H----------HHHccCCchhhhHHHH
Q 023975 86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TE---R----------LNQYQAGPTGVELAGE 138 (274)
Q Consensus 86 ~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------~~---~----------~~~~~~g~~~~e~a~~ 138 (274)
.++. +.|.+.++..+.||+||+|||+.|..|+++ .. . +..+++|.+|+|+|..
T Consensus 84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~ 163 (847)
T PRK14989 84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGA 163 (847)
T ss_pred EEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHH
Confidence 5554 467788888899999999999997655421 11 1 1223448999999999
Q ss_pred hhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC--CceeEECCCCcEEeecEEEEcc
Q 023975 139 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCT 215 (274)
Q Consensus 139 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~ 215 (274)
|. ..+.+++++.+.+.+++ .+++.....+.+.+++.||++++++.++++..++ ....+.+.+|+++++|.||+|+
T Consensus 164 L~--~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 164 LK--NLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HH--HcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 98 56889999999988776 5788889999999999999999999999997543 2456778899999999999999
Q ss_pred cCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 216 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 216 G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
|..|+.+++...++ .++++|+|.||++++| +.|+|||+|||+..+...
T Consensus 242 G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~ 289 (847)
T PRK14989 242 GIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRV 289 (847)
T ss_pred CcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcc
Confidence 99999988776666 5678899999999999 899999999999876543
No 25
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=234.81 Aligned_cols=254 Identities=24% Similarity=0.231 Sum_probs=186.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----c-----------------CC------ccc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----V-----------------EP------SFG 63 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----~-----------------~~------~~~ 63 (274)
++||+|||||++|+.+|..++ +|.+|+|+|+.. +|+.+...... + .. ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 469999999999999999997 599999999875 45433111100 0 00 000
Q ss_pred cceee------------eccccc--cccEEEEEeeEE----EecC--eEEeCCCe--EEecCEEEEccCCCCCCChh---
Q 023975 64 KRSVI------------NHTDYL--VNGRIVASPAIN----ITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKT--- 118 (274)
Q Consensus 64 ~~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~--- 118 (274)
..... ...+.+ .+++++...+.. .+.+ .+.+.+|. ++.||++|+|||+.|..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 00000 000111 256777777665 4444 34445564 78999999999999864331
Q ss_pred H------H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975 119 R------T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 182 (274)
Q Consensus 119 ~------~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 182 (274)
. . +++..+++|.+++|+|..+. ..+.+|+++.+.+.+++..++.+...+.+.+++.||++++
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 237 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYT--ELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK 237 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence 0 1 12233455999999999988 6789999999999988888888999999999999999999
Q ss_pred CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975 183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262 (274)
Q Consensus 183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~ 262 (274)
++++.+++.+++.+.+.+.+|+++++|.|++++|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.
T Consensus 238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~ 316 (466)
T PRK07845 238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV 316 (466)
T ss_pred CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence 99999997666666777778889999999999999999886533334446778899999999999 89999999999987
Q ss_pred CCCCCCCC
Q 023975 263 RVSASMIF 270 (274)
Q Consensus 263 ~~~~~~~~ 270 (274)
+.+.+.+.
T Consensus 317 ~~l~~~A~ 324 (466)
T PRK07845 317 LPLASVAA 324 (466)
T ss_pred ccchhHHH
Confidence 66554443
No 26
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.9e-32 Score=234.36 Aligned_cols=251 Identities=22% Similarity=0.294 Sum_probs=184.2
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC------------------Cccc-cceeeeccc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE------------------PSFG-KRSVINHTD 72 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~------------------~~~~-~~~~~~~~~ 72 (274)
.|||+||||||+|+++|+.|++ |++|+|+|+ +.+|+.+........ .... ......+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 3899999999999999999984 999999999 677765432211000 0000 000000000
Q ss_pred ------------------c--ccccEEEEEeeEEEecCeEE--eCCC-eEEecCEEEEccCCCCCCChhH----------
Q 023975 73 ------------------Y--LVNGRIVASPAINITENEVL--TAEG-RRVVYDYLVIATGHKDPVPKTR---------- 119 (274)
Q Consensus 73 ------------------~--~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~li~a~G~~~~~~~~~---------- 119 (274)
+ ..+++++.+.....+.+.+. ..++ .++.||++|+|||+.|..|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~ 159 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence 0 11356666666666655333 3333 4799999999999997654431
Q ss_pred ----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 ----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
.+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+...+.+.+++.|++++.++.+.++
T Consensus 160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 160 STGALNLKEVPESLVIIGGGVIGIEFASIFA--SLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred chHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 122333456999999999998 56889999999999888888889999999999999999999999999
Q ss_pred ccCCCceeEECCCC--cEEeecEEEEcccCCCCch--hhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 190 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 190 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
+.+++.+.+.+.+| +++.+|.+|+|+|..|+.+ ++...++ .++.+|++.||++++| +.|+||++|||++.+..
T Consensus 238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGV--ELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML 314 (461)
T ss_pred EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCc--eECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence 87666666776667 4799999999999999987 3444444 6778899999999998 89999999999986654
Q ss_pred CCCC
Q 023975 266 ASMI 269 (274)
Q Consensus 266 ~~~~ 269 (274)
...+
T Consensus 315 ~~~A 318 (461)
T TIGR01350 315 AHVA 318 (461)
T ss_pred HHHH
Confidence 4433
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.3e-32 Score=232.72 Aligned_cols=254 Identities=25% Similarity=0.345 Sum_probs=184.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee------------------e----cC---Cccccce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------M----VE---PSFGKRS 66 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~------------------~----~~---~~~~~~~ 66 (274)
+|||+||||||+|+++|..|+ .|.+|+|+|+ +.+|+.+..... . +. .......
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 489999999999999999997 4999999999 566665432100 0 00 0000000
Q ss_pred eeec-------------c--ccccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCC-CCCChhH---------H-
Q 023975 67 VINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---------T- 120 (274)
Q Consensus 67 ~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~-~~~~~~~---------~- 120 (274)
...+ . ....+++++......++.+.+.. ++.++.||++|+|||+. |.+|+.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~ 160 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD 160 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence 0000 0 01124566666555556665655 66789999999999998 7777641 1
Q ss_pred ---------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975 121 ---------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 191 (274)
Q Consensus 121 ---------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 191 (274)
+++..+++|.+++|+|..+. ..+.+++++.+.+.+++..++.+...+.+.+++. +++++++.+.+++.
T Consensus 161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~ 237 (460)
T PRK06292 161 DAFELDKLPKSLAVIGGGVIGLELGQALS--RLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK 237 (460)
T ss_pred HHhCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence 11223455999999999988 5689999999999988888888999999999999 99999999999976
Q ss_pred CCC-ceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975 192 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 268 (274)
Q Consensus 192 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~ 268 (274)
+++ .+.+++.++ +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...+.
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~~ 316 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLHE 316 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchhH
Confidence 544 344433333 47999999999999999886543334446778899999999999 89999999999987766555
Q ss_pred CCCC
Q 023975 269 IFPQ 272 (274)
Q Consensus 269 ~~~~ 272 (274)
+..|
T Consensus 317 A~~q 320 (460)
T PRK06292 317 AADE 320 (460)
T ss_pred HHHH
Confidence 4433
No 28
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.3e-32 Score=233.16 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=179.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------cCC----cc--ccceeeecc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------VEP----SF--GKRSVINHT 71 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~~~----~~--~~~~~~~~~ 71 (274)
+|||+||||||+|++||..++ +|++|+|+|+...+|+........ ... .+ .......+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999997 599999999877777653211000 000 00 000000000
Q ss_pred ------------------ccc--cccEEEEEeeEEEecCeE--EeCCC--eEEecCEEEEccCCCCC-CChhH-------
Q 023975 72 ------------------DYL--VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDP-VPKTR------- 119 (274)
Q Consensus 72 ------------------~~~--~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~li~a~G~~~~-~~~~~------- 119 (274)
..+ .+++++.......+.+.+ ...++ ..+.||++|+|||+.|. +|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~ 162 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 001 135666665433344433 33455 36899999999999864 33321
Q ss_pred -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
. +++..+++|.+++|+|..+. ..+.+|+++.+.+.+++.+++.+...+.+.+++.||++++++.+++
T Consensus 163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~--~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWR--RLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CHHHHhCCccCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 1 11222345999999999888 6789999999999988888888999999999999999999999999
Q ss_pred eccCCCceeEECC---C--CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975 189 DSVSEGSDTYLTS---T--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263 (274)
Q Consensus 189 i~~~~~~~~v~~~---~--g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~ 263 (274)
++.+++.+.+.+. + ++++++|.|++++|..|+.+.+.....++.++.+| +.+|++++| +.|+|||+|||++.|
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~ 318 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP 318 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence 9865555544432 2 35799999999999999988654433344555565 778999998 899999999999877
Q ss_pred CCCCCCCC
Q 023975 264 VSASMIFP 271 (274)
Q Consensus 264 ~~~~~~~~ 271 (274)
..++.+..
T Consensus 319 ~la~~A~~ 326 (466)
T PRK06115 319 MLAHKAED 326 (466)
T ss_pred ccHHHHHH
Confidence 66555443
No 29
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.1e-31 Score=225.04 Aligned_cols=245 Identities=19% Similarity=0.251 Sum_probs=178.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceee-ecCCccccceeeeccccc--cccEEEEE-eeE
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYL--VNGRIVAS-PAI 85 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 85 (274)
.++|+|||||+||++||..|++ | .+|+|+++++...+....+.. ++.............+++ .++++... .+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 3689999999999999999974 4 489999998876543222221 211111111111112222 25666544 344
Q ss_pred EEe--cCeEEeCCCeEEecCEEEEccCCCCCCChh---------------HHH----------HHHHccCCchhhhHHHH
Q 023975 86 NIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT---------------RTE----------RLNQYQAGPTGVELAGE 138 (274)
Q Consensus 86 ~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~---------------~~~----------~~~~~~~g~~~~e~a~~ 138 (274)
.++ .+.+.++++..+.||+||+|||+.|..++. +.. ++..+++|.+++|+|..
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~ 162 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS 162 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 454 347778888899999999999998643321 111 12223458999999999
Q ss_pred hhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 139 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 139 l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
+. ..+.+++++.+.+.+++. .++.+.+.+.+.+++.||++++++.+++++. ++...+.+.+|+++.||.||+++|.
T Consensus 163 l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 163 AT--QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HH--HcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 98 568899999998887763 5667778888899999999999999999975 4456677888999999999999999
Q ss_pred CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
.|+..++...++ .. ++++.||++++| +.|+|||+|||+..+..
T Consensus 240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~ 282 (396)
T PRK09754 240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLD 282 (396)
T ss_pred ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence 999888766655 22 467999999999 89999999999976654
No 30
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=5.7e-32 Score=232.61 Aligned_cols=248 Identities=21% Similarity=0.290 Sum_probs=180.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee----------------------cC--Cccccc
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM----------------------VE--PSFGKR 65 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~----------------------~~--~~~~~~ 65 (274)
...|||+|||||++|++||..+++ |.+|+|||++ .+|++....... +. ......
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 356899999999999999999985 9999999986 455442110000 00 000000
Q ss_pred eeeec------------cccc--cccEEEEEeeEEEecCeEE----------------------------eCCCeEEecC
Q 023975 66 SVINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD 103 (274)
Q Consensus 66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~~~~~~~~ 103 (274)
....+ ...+ .+++++.+.....+++.|. .+++.+++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 00000 0111 2467777766555544332 2456789999
Q ss_pred EEEEccCCCCCCChhHH-------HH---------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHH
Q 023975 104 YLVIATGHKDPVPKTRT-------ER---------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD 167 (274)
Q Consensus 104 ~li~a~G~~~~~~~~~~-------~~---------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (274)
++|+|||+.|..|+.+. .. +..+++|.+|+|+|..+. ..+.+++++.+.+.+++.+++.+.+
T Consensus 205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~--~~G~~Vtli~~~~~il~~~d~~i~~ 282 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVN--RLGAESYIFARGNRLLRKFDETIIN 282 (561)
T ss_pred EEEEecCCCCCCCCCCCceeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHH--HcCCcEEEEEecccccccCCHHHHH
Confidence 99999999977665321 12 223445999999999998 6789999999999888888999999
Q ss_pred HHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCC-CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCc
Q 023975 168 KTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTST-GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL 245 (274)
Q Consensus 168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 245 (274)
.+.+.+++.||++++++.+.+++.+++ .+.+.+.+ ++++++|.|++|+|..|+.+.+...++... .++|+|.||+++
T Consensus 283 ~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l 361 (561)
T PTZ00058 283 ELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ 361 (561)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence 999999999999999999999986543 34444434 457999999999999999988866555433 467899999999
Q ss_pred cccCCCCeEEeccccCCC
Q 023975 246 RVKGQKNIFAIGDITDIR 263 (274)
Q Consensus 246 ~~~~~~~i~~~Gd~~~~~ 263 (274)
+| +.|+|||+|||++.+
T Consensus 362 qT-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 362 RT-SVKHIYAVGDCCMVK 378 (561)
T ss_pred cc-CCCCEEEeEeccCcc
Confidence 98 899999999999843
No 31
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.5e-32 Score=231.01 Aligned_cols=253 Identities=20% Similarity=0.239 Sum_probs=182.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcC------CCCceeeccceeeec--------------C---Cc--cc-c
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP------KEYFEITWASLRAMV--------------E---PS--FG-K 64 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~------~~~~g~~~~~~~~~~--------------~---~~--~~-~ 64 (274)
..||++||||||+|++||..+++ |.+|+|+|+ ...+|+.+....... . .. .. .
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 35899999999999999999985 999999998 244554432211100 0 00 00 0
Q ss_pred ceeeec------------------ccc--ccccEEEEEeeEEEe----cCeEEeC--CCeEEecCEEEEccCCCCCC-Ch
Q 023975 65 RSVINH------------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK 117 (274)
Q Consensus 65 ~~~~~~------------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~~~~~~~~~li~a~G~~~~~-~~ 117 (274)
.....+ ... ..+++++......++ ...+... ++.+++||++|+|||+.|.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~ 162 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG 162 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence 000000 000 124677777766655 3455543 34589999999999998743 32
Q ss_pred hH------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcE
Q 023975 118 TR------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 179 (274)
Q Consensus 118 ~~------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 179 (274)
.. .+.+..+++|.+++|+|..+. ..+.+|+++.+.+.+++..++.+...+.+.+++.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWR--RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence 11 012223444999999999888 5689999999999888888888899999999999999
Q ss_pred EEcCceeeeeccCCCceeEECCC--C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEE
Q 023975 180 VKLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA 255 (274)
Q Consensus 180 i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~ 255 (274)
+++++.|++++.+++.+.+.+.+ | +++++|.|++++|..|+.+++....+++.++++|++.||++++| +.|+||+
T Consensus 241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA 319 (475)
T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA 319 (475)
T ss_pred EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence 99999999998766666666544 3 47999999999999999886544444446778899999999998 8999999
Q ss_pred eccccCCCCCCC
Q 023975 256 IGDITDIRVSAS 267 (274)
Q Consensus 256 ~Gd~~~~~~~~~ 267 (274)
+|||++.+...+
T Consensus 320 ~GD~~~~~~~~~ 331 (475)
T PRK06327 320 IGDVVRGPMLAH 331 (475)
T ss_pred EEeccCCcchHH
Confidence 999998665443
No 32
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=1.1e-31 Score=229.71 Aligned_cols=250 Identities=20% Similarity=0.234 Sum_probs=178.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR 65 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~ 65 (274)
..|||+||||||+|++||..|+ .|++|+|+|+. .+|+.+........ ......
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4699999999999999999998 49999999996 56655422110000 000000
Q ss_pred eeee------------cccc--ccccEEEEEeeEEEecC---------eEEeCCC--eEEecCEEEEccCCCCCC-ChhH
Q 023975 66 SVIN------------HTDY--LVNGRIVASPAINITEN---------EVLTAEG--RRVVYDYLVIATGHKDPV-PKTR 119 (274)
Q Consensus 66 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~---------~v~~~~~--~~~~~~~li~a~G~~~~~-~~~~ 119 (274)
.... .... ..+++++.+....++.+ .+.+.+| .++.||++|+|||+.|.. |...
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 0000 0011 12567888877766654 3444555 579999999999999753 3211
Q ss_pred --------H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975 120 --------T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 181 (274)
Q Consensus 120 --------~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 181 (274)
. +++..+++|..++|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~--~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLA--DFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 0 12223445999999999998 568999999999998888888899999999999999999
Q ss_pred cCceeeeecc--CCCceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEec
Q 023975 182 LGERVNLDSV--SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 257 (274)
Q Consensus 182 ~~~~v~~i~~--~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~G 257 (274)
.++.+.+++. +++...+.+.+| +++++|.||+|+|..|+.+.+.....++.. .+|++.||+++++ +.++||++|
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG 317 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG 317 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence 9999999974 333333344566 369999999999999998765433333333 4688999999998 799999999
Q ss_pred cccCCCCCC
Q 023975 258 DITDIRVSA 266 (274)
Q Consensus 258 d~~~~~~~~ 266 (274)
||++.+...
T Consensus 318 D~~~~~~~~ 326 (472)
T PRK05976 318 DVIGEPQLA 326 (472)
T ss_pred ecCCCcccH
Confidence 999765443
No 33
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.98 E-value=5.6e-31 Score=219.56 Aligned_cols=244 Identities=23% Similarity=0.308 Sum_probs=178.1
Q ss_pred CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceee--ecccccc--ccEEEE-Eee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI--NHTDYLV--NGRIVA-SPA 84 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~-~~~ 84 (274)
+++|+|||||+||+++|..|++ ..+|+|+++++...+....+...+.......... ...+++. +++++. ..+
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 3699999999999999999963 6799999988764432222222222111111111 1112221 455543 344
Q ss_pred EEEec--CeEEeCCCeEEecCEEEEccCCCCCCChhHH----------H-------------HHHHccCCchhhhHHHHh
Q 023975 85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------E-------------RLNQYQAGPTGVELAGEI 139 (274)
Q Consensus 85 ~~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------~-------------~~~~~~~g~~~~e~a~~l 139 (274)
..++. +.+.+ ++..+.||+||+|||+.|..|+++. . ++..+++|.+++|+|..+
T Consensus 82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL 160 (377)
T ss_pred EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence 45543 35555 5678999999999999876554221 1 112234589999999999
Q ss_pred hhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 140 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 140 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
. ..+.+++++.+.+.+++. .++.+...+.+.+++.|++++.++++.+++.+++...+.+.+|++++||.||+|+|..
T Consensus 161 ~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 161 C--RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred H--hcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 8 568899999998887764 4667788889999999999999999999987766677888899999999999999999
Q ss_pred CCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 219 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
|+.+++...++. . .+ ++.||++++| +.|+|||+|||+..+.
T Consensus 239 p~~~l~~~~gl~--~-~~-gi~vd~~l~t-s~~~VyA~GD~a~~~~ 279 (377)
T PRK04965 239 PNTALARRAGLA--V-NR-GIVVDSYLQT-SAPDIYALGDCAEING 279 (377)
T ss_pred cchHHHHHCCCC--c-CC-CEEECCCccc-CCCCEEEeeecEeECC
Confidence 998888776663 3 23 4999999999 8999999999997654
No 34
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.98 E-value=6.2e-31 Score=224.13 Aligned_cols=244 Identities=21% Similarity=0.294 Sum_probs=175.9
Q ss_pred cEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCcccc--ceeeeccccc--cccEEE-EEeeEE
Q 023975 15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRIV-ASPAIN 86 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~~ 86 (274)
+|+|||||++|+++|..|++ +.+|+|||+++.+++....+.......+.. .......+.+ .++++. ...+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 79999999999999999973 569999999998765443333332221111 1111111111 245554 334555
Q ss_pred Ee--cCeEEeCC---CeEEe--cCEEEEccCCCCCCChhH---------------HHH------------HHHccCCchh
Q 023975 87 IT--ENEVLTAE---GRRVV--YDYLVIATGHKDPVPKTR---------------TER------------LNQYQAGPTG 132 (274)
Q Consensus 87 ~~--~~~v~~~~---~~~~~--~~~li~a~G~~~~~~~~~---------------~~~------------~~~~~~g~~~ 132 (274)
++ .+.+.+.+ +..+. ||++|+|||+.|..|..+ ... +..+++|.++
T Consensus 82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g 161 (444)
T PRK09564 82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG 161 (444)
T ss_pred EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 54 34555533 55566 999999999986544311 011 1223448899
Q ss_pred hhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEE
Q 023975 133 VELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCH 211 (274)
Q Consensus 133 ~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~v 211 (274)
+|+|..+. ..+.+++++.+.+.+++ .+++.+.+.+.+.+++.|+++++++++.++..+++...+.++ +.++.+|.+
T Consensus 162 ~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~v 238 (444)
T PRK09564 162 LEAVEAAK--HLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVV 238 (444)
T ss_pred HHHHHHHH--hcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEE
Confidence 99999987 56889999998887776 577889999999999999999999999999654433344554 447999999
Q ss_pred EEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 212 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 212 v~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
|+|+|..|+.++++..++ .++++|++.||++++| +.|+|||+|||++.+.
T Consensus 239 i~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~ 288 (444)
T PRK09564 239 IVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN 288 (444)
T ss_pred EECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence 999999999999887766 4567899999999998 8999999999998643
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=3.1e-31 Score=227.32 Aligned_cols=251 Identities=20% Similarity=0.197 Sum_probs=177.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Cceeeccceeeec---------------------C---
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWASLRAMV---------------------E--- 59 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~--------~~g~~~~~~~~~~---------------------~--- 59 (274)
+|||+||||||+|++||..|+ .|.+|+|+|+.. .+|+......... .
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 589999999999999999997 599999999632 3565421110000 0
Q ss_pred -Cccccceeeec------------cccc--cccEEEEEeeEEEecCeEEeCC---CeEEecCEEEEccCCCCCCCh-hH-
Q 023975 60 -PSFGKRSVINH------------TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TR- 119 (274)
Q Consensus 60 -~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~li~a~G~~~~~~~-~~- 119 (274)
.......+..+ .... .+++++.......+.+.+...+ +..++||++|+|||+.|..|. ++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G 164 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG 164 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence 00000000000 0001 2455566665555555555432 357999999999999976542 11
Q ss_pred -------HH----------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975 120 -------TE----------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 182 (274)
Q Consensus 120 -------~~----------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 182 (274)
.. ++..+++|.+++|+|..+. ..+.+|+++.+. .+++.+++.+.+.+.+.+++.||+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~ 241 (499)
T PTZ00052 165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLN--ELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE 241 (499)
T ss_pred ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence 11 1223455999999999998 578999999874 566778888999999999999999999
Q ss_pred CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC-
Q 023975 183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD- 261 (274)
Q Consensus 183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~- 261 (274)
++.+.+++..++...+.+.+|+++.+|.|++++|..|+.+++....+++.++++|++.+++. +| +.|+|||+|||+.
T Consensus 242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~ 319 (499)
T PTZ00052 242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG 319 (499)
T ss_pred CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC
Confidence 99998887655556677778888999999999999999988754444456778888777766 87 8999999999985
Q ss_pred CCCCCCC
Q 023975 262 IRVSASM 268 (274)
Q Consensus 262 ~~~~~~~ 268 (274)
.+...+.
T Consensus 320 ~~~l~~~ 326 (499)
T PTZ00052 320 RPELTPV 326 (499)
T ss_pred CcccHHH
Confidence 4444433
No 36
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=4.7e-31 Score=225.20 Aligned_cols=253 Identities=19% Similarity=0.162 Sum_probs=181.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC--------Cceeeccceee--------------ecC--Ccc--c-c
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLRA--------------MVE--PSF--G-K 64 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~g~~~~~~~~--------------~~~--~~~--~-~ 64 (274)
.||++||||||+|+.+|..+++ |.+|+++|+.. .+|+.+..... ... ..+ . .
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999984 99999999731 35544321000 000 000 0 0
Q ss_pred c-eeee------------------ccccc--cccEEEEEeeEEEecCeEEeC--CC--eEEecCEEEEccCCCCCCChhH
Q 023975 65 R-SVIN------------------HTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR 119 (274)
Q Consensus 65 ~-~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~li~a~G~~~~~~~~~ 119 (274)
. .... ....+ .+++++......++++.+... ++ ..+.||++|+|||+.|..|+++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 0 0000 00011 256788888877777755442 33 4799999999999997765532
Q ss_pred H--------H----------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975 120 T--------E----------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 181 (274)
Q Consensus 120 ~--------~----------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 181 (274)
. . ++..+++|.+|+|+|..+. ..+.+|+++.+ +.+++.+++.+.+.+.+.+++.||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHH--HhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 1 1 1222345999999999998 56889999987 467788899999999999999999999
Q ss_pred cCceeeeeccCCCceeEECCCC---cEEeecEEEEcccCCCCchhhcccccccccCC-CCcEEeCCCccccCCCCeEEec
Q 023975 182 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG 257 (274)
Q Consensus 182 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~i~~~G 257 (274)
+++.+.+++..++...+++.++ +++++|.|++|+|..|+.+++.....++.++. +|+|.||++++| +.|+|||+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence 9999988876555556666555 37999999999999999987654444445654 488999999998 899999999
Q ss_pred cccC-CCCCCCCC
Q 023975 258 DITD-IRVSASMI 269 (274)
Q Consensus 258 d~~~-~~~~~~~~ 269 (274)
||+. .+...+.+
T Consensus 318 Dv~~~~~~l~~~A 330 (484)
T TIGR01438 318 DILEDKQELTPVA 330 (484)
T ss_pred EecCCCccchHHH
Confidence 9996 44444333
No 37
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=4.6e-31 Score=236.63 Aligned_cols=243 Identities=18% Similarity=0.269 Sum_probs=185.0
Q ss_pred EEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEE-eeEEE
Q 023975 16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVAS-PAINI 87 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~ 87 (274)
|+|||+|+||+++|..|+ .+++|+|||+++.+++....+...+..... ........+++ .+++++.. .+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999998875 368999999999876554444433322211 11222223333 25666543 44455
Q ss_pred e--cCeEEeCCCeEEecCEEEEccCCCCCCChhH---------------HHH----------HHHccCCchhhhHHHHhh
Q 023975 88 T--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TER----------LNQYQAGPTGVELAGEIA 140 (274)
Q Consensus 88 ~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------~~~----------~~~~~~g~~~~e~a~~l~ 140 (274)
+ .+.+.+.++.++.||+||+|||+.|..|+++ ... +..+++|.+|+|+|..|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~ 160 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 4 3478888888999999999999987655421 111 122445899999999998
Q ss_pred hhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 141 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+.+++++.+.+.+++ .+++.....+.+.+++.||++++++.++++..++....+.+.+|+++++|.||+++|..|
T Consensus 161 --~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 161 --NLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred --hcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 56889999999888765 467788888999999999999999999999766555678889999999999999999999
Q ss_pred CchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 220 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
+.++....++. . +|++.||++++| +.|+|||+|||+..+..
T Consensus 239 n~~la~~~gl~--~--~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~ 279 (785)
T TIGR02374 239 NDELAVSAGIK--V--NRGIIVNDSMQT-SDPDIYAVGECAEHNGR 279 (785)
T ss_pred CcHHHHhcCCc--c--CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence 99988776663 3 377999999999 89999999999987654
No 38
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2e-30 Score=221.09 Aligned_cols=249 Identities=20% Similarity=0.207 Sum_probs=175.7
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccce-----eee---------------cCC-------ccccce
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL-----RAM---------------VEP-------SFGKRS 66 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~-----~~~---------------~~~-------~~~~~~ 66 (274)
+|+||||||+|+++|..++ .|.+|+|+||.. +|+..... ..+ ..- ......
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 8999999999999999997 499999999975 44321100 000 000 000000
Q ss_pred eeec------------ccc--ccccEEEEEeeEEEecCeEE--eCCC-eEEecCEEEEccCCCCCCChhH----------
Q 023975 67 VINH------------TDY--LVNGRIVASPAINITENEVL--TAEG-RRVVYDYLVIATGHKDPVPKTR---------- 119 (274)
Q Consensus 67 ~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~li~a~G~~~~~~~~~---------- 119 (274)
...+ ... ..+++++.+....++.+.+. .+++ .++.||++|+|||+.|..|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~ 160 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS 160 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence 0000 000 12567777777767766443 3344 4799999999999987543311
Q ss_pred ---------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 ---------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ---------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|.+|+|+|..+. ..+.+++++.+.+.+++..++.+.+.+.+.+++.||++++++.+++++
T Consensus 161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYS--RLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred hHHhCccccCCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 112333456999999999887 568899999999998888888899999999999999999999999997
Q ss_pred cCCCceeEECCCC-cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975 191 VSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 268 (274)
Q Consensus 191 ~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~ 268 (274)
.++..+.+...++ +++++|.|++|+|..|+.+.+.....++.++++| +.||++++| +.|+|||+|||++.+...+.
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la~~ 315 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLAHV 315 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccHHH
Confidence 6554444443222 3699999999999999987654333333455555 999999998 89999999999986655543
No 39
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=3.5e-30 Score=214.15 Aligned_cols=241 Identities=28% Similarity=0.404 Sum_probs=175.3
Q ss_pred cEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEEeeEEE
Q 023975 15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
+|+|||||+||+.+|..|+ ++++|+|||+++...+.+. +......... .+......+++ .+++++...+..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 5899999999999999984 3789999999987543322 1111111111 11222222222 2577877777777
Q ss_pred ec--CeEEeCCCeEEecCEEEEccCCCCCCChhHH------------------HHHH-------------HccCCchhhh
Q 023975 88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------------ERLN-------------QYQAGPTGVE 134 (274)
Q Consensus 88 ~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~------------------~~~~-------------~~~~g~~~~e 134 (274)
+. +.|.++++++++||+||+|||+.+..|..+. ..+. .+++|..++|
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E 159 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE 159 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence 64 4788888888999999999999865443210 0011 1233889999
Q ss_pred HHHHhhhhCC----CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecE
Q 023975 135 LAGEIAVDFP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 210 (274)
Q Consensus 135 ~a~~l~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~ 210 (274)
+|..+.+.++ ..+++++ ..+.+++..++.+...+.+.+++.||+++.++.+.++..+ .+.+.+|+++++|.
T Consensus 160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~ 234 (364)
T TIGR03169 160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA 234 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence 9998874321 2478888 5566666677778888999999999999999999988632 57778888999999
Q ss_pred EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 211 vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
+|+|+|..|+. ++...++ .++++|++.||+.+++.+.|+||++|||+..+.
T Consensus 235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~ 285 (364)
T TIGR03169 235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD 285 (364)
T ss_pred EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence 99999999864 5555554 467789999999999878999999999997653
No 40
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=1.7e-30 Score=226.25 Aligned_cols=257 Identities=20% Similarity=0.254 Sum_probs=180.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-CCceeeccce------------------eee-------cC------
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-EYFEITWASL------------------RAM-------VE------ 59 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~-~~~g~~~~~~------------------~~~-------~~------ 59 (274)
+|||+|||+|++|..+|..++ .|.+|+|||+. ..+|++.-.. ... +.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999997 59999999975 2455432110 000 00
Q ss_pred -------------C--ccccceeeec------------cccc---------cccEEEEEeeEEEecCeEEe-CCCeEEec
Q 023975 60 -------------P--SFGKRSVINH------------TDYL---------VNGRIVASPAINITENEVLT-AEGRRVVY 102 (274)
Q Consensus 60 -------------~--~~~~~~~~~~------------~~~~---------~~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 102 (274)
. .+.......+ ...+ ..++++.......+++.+.. .++.++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a 275 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV 275 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence 0 0000000000 0001 12466666666666665554 35678999
Q ss_pred CEEEEccCCCCCCChhH------------H-------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCCh
Q 023975 103 DYLVIATGHKDPVPKTR------------T-------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP 163 (274)
Q Consensus 103 ~~li~a~G~~~~~~~~~------------~-------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~ 163 (274)
|++|+|||+.|.+|+.. . +.+..+++|++|+|+|..+. ..+.+|+++.+.+.+++.+++
T Consensus 276 d~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~--~~G~eVTLIe~~~~ll~~~d~ 353 (659)
T PTZ00153 276 KNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYT--ALGSEVVSFEYSPQLLPLLDA 353 (659)
T ss_pred CEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHH--hCCCeEEEEeccCcccccCCH
Confidence 99999999998776511 0 12333455999999999888 568999999999999998888
Q ss_pred hHHHHHHHHH-HhCCcEEEcCceeeeeccCCCc--eeEECCC-------C--------cEEeecEEEEcccCCCCchhhc
Q 023975 164 KAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTST-------G--------DTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 164 ~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--------~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.+.+.+.+.+ ++.||++++++.|.+++.+++. +.+.+.+ + +++++|.|++|+|..|+.+.+.
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~ 433 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLG 433 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCC
Confidence 8888888875 6789999999999999865433 4443321 1 2799999999999999998764
Q ss_pred ccccccccCCCCcEEeCCCccccC-----CCCeEEeccccCCCCCCCCCCCC
Q 023975 226 DTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDITDIRVSASMIFPQ 272 (274)
Q Consensus 226 ~~~~~~~~~~~g~~~v~~~~~~~~-----~~~i~~~Gd~~~~~~~~~~~~~~ 272 (274)
....++.++ +|+|.||+++||.. +|+|||+|||++.+.+.+.+..|
T Consensus 434 l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~q 484 (659)
T PTZ00153 434 LDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQ 484 (659)
T ss_pred chhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHH
Confidence 433333454 58999999999831 69999999999877666555433
No 41
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=1.7e-29 Score=205.03 Aligned_cols=246 Identities=22% Similarity=0.273 Sum_probs=167.1
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec-CCcccc----cee-eeccccc--cccEEEEEee
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFGK----RSV-INHTDYL--VNGRIVASPA 84 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~-~~~~~~----~~~-~~~~~~~--~~~~~~~~~~ 84 (274)
+||+|||||++|+++|..|+ +|++|+|+|+++ .|+.+....... .+.+.. ... ....+.. .++++....+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 68999999999999999997 599999999886 443322111000 011100 000 0011111 1345544555
Q ss_pred EEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhHHHH
Q 023975 85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVELAGE 138 (274)
Q Consensus 85 ~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~a~~ 138 (274)
..++.. .+.+.++.++.||++|+|+|..|..|..+.. ++..+++|.+++|++..
T Consensus 80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~ 159 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY 159 (300)
T ss_pred EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence 555432 4566677789999999999998664432211 11123448899999999
Q ss_pred hhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECC---CC--cEEeecEEE
Q 023975 139 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS---TG--DTINADCHF 212 (274)
Q Consensus 139 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~~~~d~vv 212 (274)
+. ..+.+++++.+.+.+. ....+.+.+++. |++++.++.+.+++.++....+.+. ++ +++++|.+|
T Consensus 160 l~--~~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 160 LT--RIAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HH--hhcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 88 4578999999876542 234566677777 9999999999999865533334332 23 579999999
Q ss_pred EcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC-CCCCCCCCCCC
Q 023975 213 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD-IRVSASMIFPQ 272 (274)
Q Consensus 213 ~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~-~~~~~~~~~~~ 272 (274)
+|+|+.|+.+++... + .++++|++.+|+++++ +.|+||++|||++ .+.....++.|
T Consensus 232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~~~~~~~~A~~~ 288 (300)
T TIGR01292 232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDKGYRQAVTAAGD 288 (300)
T ss_pred EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCcchhhhhhhhhh
Confidence 999999998888765 3 4677899999999998 8999999999998 34444444443
No 42
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-29 Score=197.67 Aligned_cols=237 Identities=24% Similarity=0.267 Sum_probs=166.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCc-EEEEcCCCCceeeccceeeecC--Ccccc-----ceeeecccc--ccccEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAMVE--PSFGK-----RSVINHTDY--LVNGRIV 80 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~g~~~~~~~~~~~--~~~~~-----~~~~~~~~~--~~~~~~~ 80 (274)
+++||+|||||||||+||.++++ +.+ ++|+|+.. .|+...... ... +.+.. .......+. ..+.++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 45899999999999999999985 888 66666543 332211111 111 00100 000001111 1234444
Q ss_pred EEeeEEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhH---------------------HHHHHHccCCchhhhH
Q 023975 81 ASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------------TERLNQYQAGPTGVEL 135 (274)
Q Consensus 81 ~~~~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------------~~~~~~~~~g~~~~e~ 135 (274)
...+..++.. .+.++++. +.++++|+|||..+..|+.. .+.+..+++|.+++|.
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~ 158 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEE 158 (305)
T ss_pred EEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCccccCCeEEEEcCCHHHHHH
Confidence 4444444322 67777876 99999999999986655432 1222334449999999
Q ss_pred HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCC--C--cEEeecE
Q 023975 136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST--G--DTINADC 210 (274)
Q Consensus 136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~ 210 (274)
|..|. ..+++|++++|.+.+.. .+.+.+.+++. ++++++++.+.++..++ ...+++.+ + +.+.+|.
T Consensus 159 Al~L~--~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~g 229 (305)
T COG0492 159 ALYLS--KIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDG 229 (305)
T ss_pred HHHHH--HhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEece
Confidence 99998 66788999999987653 35666667666 89999999999998766 33455444 2 3789999
Q ss_pred EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 211 vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
+++++|..|+..++...+. ++++|++.+|+.++| |.|+|||+|||+..+.
T Consensus 230 vf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~ 279 (305)
T COG0492 230 VFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG 279 (305)
T ss_pred EEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc
Confidence 9999999999998887665 788999999999999 8999999999998775
No 43
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=8.5e-29 Score=194.21 Aligned_cols=258 Identities=20% Similarity=0.277 Sum_probs=198.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----c---------CC-ccccce---------
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----V---------EP-SFGKRS--------- 66 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----~---------~~-~~~~~~--------- 66 (274)
..||++|||+||.|..||...+ .|.+.+++|++..+|++.-..... + .. .+..+-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 3599999999999999998886 599999999999988664322110 0 00 100000
Q ss_pred ---eeec------------cccc--cccEEEEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCC-CCCChhH-----
Q 023975 67 ---VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHK-DPVPKTR----- 119 (274)
Q Consensus 67 ---~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~-~~~~~~~----- 119 (274)
.... ...+ .++.++.+.....+++.|.. .+| ..+.++.+++|||+. +.+|++.
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk 197 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence 0000 0011 13555666666667664443 333 478899999999995 6667632
Q ss_pred -------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975 120 -------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 186 (274)
Q Consensus 120 -------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 186 (274)
.+++..+++|.+|+|+...+. +.|++|+++.-.+.+.+.++.+++..+++.|++.|+.+.+++.|
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 334455666999999999998 78999999999999999999999999999999999999999999
Q ss_pred eeeccCCC-ceeEECCC---C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975 187 NLDSVSEG-SDTYLTST---G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260 (274)
Q Consensus 187 ~~i~~~~~-~~~v~~~~---g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~ 260 (274)
...+.+++ .+.++..+ + ++++||.+.+++|.+|...-|..+.+++..|..|++.+|..++| .+|+||++||+.
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence 99988776 55555433 2 48999999999999998887777777778899999999999999 799999999999
Q ss_pred CCCCCCCCCCCC
Q 023975 261 DIRVSASMIFPQ 272 (274)
Q Consensus 261 ~~~~~~~~~~~~ 272 (274)
.-|.+++.+-.|
T Consensus 355 ~gpMLAhkAeee 366 (506)
T KOG1335|consen 355 LGPMLAHKAEEE 366 (506)
T ss_pred Ccchhhhhhhhh
Confidence 999998776544
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=7.3e-28 Score=196.81 Aligned_cols=240 Identities=15% Similarity=0.160 Sum_probs=159.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---cC--Cccccce----eeeccccccccEEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS----VINHTDYLVNGRIVA 81 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---~~--~~~~~~~----~~~~~~~~~~~~~~~ 81 (274)
..+||+||||||+||+||..|+ +|++++++|+. ..|+.+...... .. ....... +......+ ..++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEe
Confidence 4689999999999999999997 59999999965 344332211111 00 0000000 00011111 123333
Q ss_pred EeeEEE--ecCe--EEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhH
Q 023975 82 SPAINI--TENE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVEL 135 (274)
Q Consensus 82 ~~~~~~--~~~~--v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~ 135 (274)
..+..+ ..+. +..+. ..+.||++|+|||..|..|+.+.. ++..+++|.+++|+
T Consensus 83 ~~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~ 161 (321)
T PRK10262 83 DHINKVDLQNRPFRLTGDS-GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEE 161 (321)
T ss_pred eEEEEEEecCCeEEEEecC-CEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHH
Confidence 222223 2232 33333 368999999999998765543321 11223348899999
Q ss_pred HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC------CcEEee
Q 023975 136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST------GDTINA 208 (274)
Q Consensus 136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~~~~ 208 (274)
|..+. ..+.+++++.+.+.+. .++.+.+.+.+.+++.||++++++.++++..++... .+++.+ .+++++
T Consensus 162 A~~l~--~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~ 237 (321)
T PRK10262 162 ALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV 237 (321)
T ss_pred HHHHH--hhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEEC
Confidence 99998 5688999999877542 235567778888899999999999999998655332 344332 247999
Q ss_pred cEEEEcccCCCCchhhcccccccccCCCCcEEeCC-----CccccCCCCeEEeccccCCC
Q 023975 209 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR 263 (274)
Q Consensus 209 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~i~~~Gd~~~~~ 263 (274)
|.||+++|..|+..++.. ++ .+ ++|++.+|+ .++| +.|+|||+|||++.+
T Consensus 238 D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 238 AGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI 292 (321)
T ss_pred CEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC
Confidence 999999999999887754 44 33 468899997 5777 899999999999754
No 45
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.96 E-value=2.4e-28 Score=210.64 Aligned_cols=239 Identities=21% Similarity=0.245 Sum_probs=163.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee---ecCCc-cccceee-eccccc--cccEEEE-E
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---MVEPS-FGKRSVI-NHTDYL--VNGRIVA-S 82 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~---~~~~~-~~~~~~~-~~~~~~--~~~~~~~-~ 82 (274)
..+||+||||||||++||.+|++ |++|+|+++ .+|+.+..... +.... .....+. ...+.. .++++.. .
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~ 288 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ 288 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence 46899999999999999999985 999999975 35544321110 00000 0000000 000111 1344433 2
Q ss_pred eeEEEec--C--eEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhHH
Q 023975 83 PAINITE--N--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVELA 136 (274)
Q Consensus 83 ~~~~~~~--~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~a 136 (274)
.+..++. + .+.++++..+.|+++++|+|..+..|+.+. +++..+++|.+|+|+|
T Consensus 289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A 368 (515)
T TIGR03140 289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAA 368 (515)
T ss_pred EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHH
Confidence 2333322 1 456667778999999999999865443221 1223344589999999
Q ss_pred HHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCC---C--cEEeec
Q 023975 137 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINAD 209 (274)
Q Consensus 137 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~d 209 (274)
..+. ..+.+++++.+.+.+. ....+.+.+++ .||+++.++.+++++.+++.+ .+.+.+ + +++++|
T Consensus 369 ~~L~--~~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D 440 (515)
T TIGR03140 369 IDLA--GIVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLD 440 (515)
T ss_pred HHHH--hcCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcC
Confidence 9998 5688999998776542 23445666766 699999999999998665443 354432 2 479999
Q ss_pred EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
.|++++|..|+.+++... + .++.+|++.||++++| +.|+|||+|||++.+.
T Consensus 441 ~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 441 GVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY 491 (515)
T ss_pred EEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence 999999999999988754 3 5677899999999999 8999999999998764
No 46
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=7.2e-28 Score=194.89 Aligned_cols=247 Identities=21% Similarity=0.349 Sum_probs=187.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEE---EEee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV---ASPA 84 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~ 84 (274)
...++|||+|++|..|+..+++ -.+++++-+..++.+....+........ ........+|+. +++++ ....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeEE
Confidence 4689999999999999999973 3477777766665554443333322111 111112223333 33443 3344
Q ss_pred EEEecCeEEeCCCeEEecCEEEEccCCC---CCCChhHHHHHH----------------------HccCCchhhhHHHHh
Q 023975 85 INITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLN----------------------QYQAGPTGVELAGEI 139 (274)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~li~a~G~~---~~~~~~~~~~~~----------------------~~~~g~~~~e~a~~l 139 (274)
+++..+.+.+.+|+.+.|+++++|||+. +.+|+...+.+. ..++|+.++|++..+
T Consensus 153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 5566779999999999999999999995 444543211111 122388999999999
Q ss_pred hhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEccc
Q 023975 140 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG 216 (274)
Q Consensus 140 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G 216 (274)
. ..+.+++++.+.+.+++ .+.+.+.+.+.+.++++||+++.++.+.+++...+ ...|.+.+|++++||.||+.+|
T Consensus 233 ~--~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG 310 (478)
T KOG1336|consen 233 V--SKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG 310 (478)
T ss_pred H--hcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec
Confidence 8 56889999999999887 56778899999999999999999999999987663 4568899999999999999999
Q ss_pred CCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 217 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
.+|+..+++. +. .+++.|++.||+++|+ +.|+|||+||++..|...
T Consensus 311 ~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~ 356 (478)
T KOG1336|consen 311 IKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG 356 (478)
T ss_pred cccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence 9999999986 33 5789999999999999 799999999999887653
No 47
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.4e-28 Score=190.72 Aligned_cols=257 Identities=21% Similarity=0.254 Sum_probs=195.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee--------------eecC------------Cccc
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------------AMVE------------PSFG 63 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~--------------~~~~------------~~~~ 63 (274)
...+|.+|||||..|+++|+..+ .|.++.|+|..-.+|++.-... ..+. ..+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 34799999999999999999987 4999999998756654432110 0000 0011
Q ss_pred cceeeec------------cccc--cccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCChhHH-----
Q 023975 64 KRSVINH------------TDYL--VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRT----- 120 (274)
Q Consensus 64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~~~----- 120 (274)
+..+... ++.+ ..+.++.+....+.+. .|...++. .++++++++|+|.+|.+|.++.
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi 177 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI 177 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence 1111000 0011 1345566666555555 55555664 3778999999999976665332
Q ss_pred ------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 121 ------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 121 ------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
++...+++|++++|+|..+. ..+.+++++.|.+.+++.+++.+.+.+.+.++..|++++.++.+++
T Consensus 178 dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~ 255 (478)
T KOG0405|consen 178 DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTK 255 (478)
T ss_pred ccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccccee
Confidence 22233445999999999998 7899999999999999999999999999999999999999999999
Q ss_pred eccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975 189 DSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 267 (274)
Q Consensus 189 i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~ 267 (274)
+....++ ..+..+.|....+|.+++|+|..|+..-+..+..+..++++|.|.+|++.+| |+|+||++||+++.-.+.+
T Consensus 256 v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTP 334 (478)
T KOG0405|consen 256 VIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTP 334 (478)
T ss_pred eeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecch
Confidence 9876655 5566677766679999999999999988888888889999999999999999 9999999999999877776
Q ss_pred CCC
Q 023975 268 MIF 270 (274)
Q Consensus 268 ~~~ 270 (274)
+++
T Consensus 335 VAi 337 (478)
T KOG0405|consen 335 VAI 337 (478)
T ss_pred HHH
Confidence 554
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.95 E-value=9.1e-27 Score=202.31 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=155.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-Ccc---ccceeee-ccccc--cccEEEEEe
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSF---GKRSVIN-HTDYL--VNGRIVASP 83 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-~~~---~~~~~~~-~~~~~--~~~~~~~~~ 83 (274)
..|||+|||||||||+||..|+ +|++|+|+|+.. +|+.......... +.. ....+.. ..... .++++....
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~ 81 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE 81 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence 4599999999999999999997 499999999964 5543221111000 000 0000000 00011 134555444
Q ss_pred eEEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhHHH
Q 023975 84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVELAG 137 (274)
Q Consensus 84 ~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~a~ 137 (274)
+..++.. .+.+.++ .+.++++|+|||+.|..|+++.. ++..+++|.+|+|+|.
T Consensus 82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~ 160 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV 160 (555)
T ss_pred EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence 4444421 3455455 68899999999999765543321 1122345999999999
Q ss_pred HhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---CCCCcEE----eecE
Q 023975 138 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTI----NADC 210 (274)
Q Consensus 138 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~~----~~d~ 210 (274)
.+. ..+.+|+++.+.+.+.. .. ....+.+++.||+++.++.|+++..++....+. ..+|+.. .+|.
T Consensus 161 ~L~--~~g~~Vtli~~~~~~~~--~~---~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~ 233 (555)
T TIGR03143 161 FLT--RYASKVTVIVREPDFTC--AK---LIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDA 233 (555)
T ss_pred HHH--ccCCEEEEEEeCCcccc--CH---HHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccc
Confidence 887 66899999998876421 11 122233345699999999999997544322222 3456532 3666
Q ss_pred ----EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC
Q 023975 211 ----HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261 (274)
Q Consensus 211 ----vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~ 261 (274)
|++++|..|+..++.. ++ .++++|++.||++++| +.|+|||+|||+.
T Consensus 234 ~~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~ 284 (555)
T TIGR03143 234 GTFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRP 284 (555)
T ss_pred cceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence 9999999999988765 33 5677899999999999 8999999999975
No 49
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=2.2e-27 Score=205.01 Aligned_cols=239 Identities=21% Similarity=0.235 Sum_probs=162.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---cCC-ccccceee-eccccc--cccEEEE-E
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEP-SFGKRSVI-NHTDYL--VNGRIVA-S 82 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---~~~-~~~~~~~~-~~~~~~--~~~~~~~-~ 82 (274)
..+||+||||||+|++||.+|+ .|++|+|+++. +|+.+...... ... ......+. ...+.. .++++.. .
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 4689999999999999999997 49999999864 56544321110 000 00000000 000001 1233332 2
Q ss_pred eeEEEec----CeEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhHH
Q 023975 83 PAINITE----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVELA 136 (274)
Q Consensus 83 ~~~~~~~----~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~a 136 (274)
.+..+.. ..+.+.++.++.++.+|+|+|..+..++.+. +.+..+++|.+|+|+|
T Consensus 288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A 367 (517)
T PRK15317 288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA 367 (517)
T ss_pred EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence 3333332 1456677778999999999999765443221 1222344489999999
Q ss_pred HHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECC---CC--cEEeec
Q 023975 137 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TG--DTINAD 209 (274)
Q Consensus 137 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~~~~d 209 (274)
..|. ..+.+++++.+.+.+.. ...+.+.+.+ .||+++.++.+.+++.+++.+ .+.+. +| +++++|
T Consensus 368 ~~L~--~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D 439 (517)
T PRK15317 368 IDLA--GIVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE 439 (517)
T ss_pred HHHH--hcCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence 9998 56889999988776432 2345556665 699999999999998765543 24432 33 369999
Q ss_pred EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
.|++++|..|+.+++... +.++++|++.+|++++| +.|+|||+|||++.+.
T Consensus 440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY 490 (517)
T ss_pred EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence 999999999999988764 35677899999999998 8999999999998764
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=2.9e-28 Score=206.73 Aligned_cols=239 Identities=20% Similarity=0.161 Sum_probs=157.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeeccccc--cccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (274)
...++|+|||||++||++|+.|+ +|++|+|+|+.+.+|+.+. ..+.. ...........+.+ .++++.....+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~---~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v- 206 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT---YGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV- 206 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee---ecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc-
Confidence 34689999999999999999998 5999999999887764321 11110 00001000001111 13444433322
Q ss_pred EecCeEEeCCCeEEecCEEEEccCC-CCCC---ChhHH-------------------------------HHHHHccCCch
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGH-KDPV---PKTRT-------------------------------ERLNQYQAGPT 131 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~-~~~~---~~~~~-------------------------------~~~~~~~~g~~ 131 (274)
.+.+.+++. ...||++++|||+ .|.. |+.+. +++..+++|.+
T Consensus 207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 283 (449)
T TIGR01316 207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT 283 (449)
T ss_pred --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence 122333322 3479999999998 4543 33210 11122344899
Q ss_pred hhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEECC--------
Q 023975 132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS-------- 201 (274)
Q Consensus 132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~-------- 201 (274)
++|+|..+. ..+++|+++.+....- + .......+.+++.||++++++.+.++..++ +.+ .+.+.
T Consensus 284 a~d~A~~l~--~~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 357 (449)
T TIGR01316 284 AVDSARTAL--RLGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQI 357 (449)
T ss_pred HHHHHHHHH--HcCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcC
Confidence 999999988 5688899998875411 1 122334466788999999999999987543 322 23321
Q ss_pred -CC-----------cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 202 -TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 202 -~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
+| .++++|.||+|+|..|+..++...++ .++.+|++.||+.++| +.|+||++|||++.+..
T Consensus 358 ~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~~ 430 (449)
T TIGR01316 358 DSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAAT 430 (449)
T ss_pred CCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcHH
Confidence 22 26999999999999999887776655 5677899999999998 89999999999975544
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=3.7e-27 Score=200.38 Aligned_cols=240 Identities=18% Similarity=0.181 Sum_probs=153.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccc-eeeeccccc--cccEEEEEeeE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKR-SVINHTDYL--VNGRIVASPAI 85 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~ 85 (274)
.+.+||+||||||+||++|+.|+ +|++|+|+|+.+.+|+.+. ..+.. .+... ......+++ .++++.....+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV---YGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee---ecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 45689999999999999999998 4999999999888774431 11110 00111 110011111 13444333322
Q ss_pred EEecCeEEeCCC-eEEecCEEEEccCC-CCC---CChhHH------------------------------HHHHHccCCc
Q 023975 86 NITENEVLTAEG-RRVVYDYLVIATGH-KDP---VPKTRT------------------------------ERLNQYQAGP 130 (274)
Q Consensus 86 ~~~~~~v~~~~~-~~~~~~~li~a~G~-~~~---~~~~~~------------------------------~~~~~~~~g~ 130 (274)
. +.+..++. ..+.||++++|||+ .|. +|+.+. +++..+++|+
T Consensus 215 ~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 291 (464)
T PRK12831 215 G---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN 291 (464)
T ss_pred C---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence 1 12222222 23569999999998 454 333110 1122234499
Q ss_pred hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEECC-------
Q 023975 131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS------- 201 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~------- 201 (274)
+|+|+|..+. ..+++|+++.+... ..+.. ....+ +.+++.||++++++.+.++..++ +.+ .+.+.
T Consensus 292 va~d~A~~l~--r~Ga~Vtlv~r~~~--~~m~a-~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 365 (464)
T PRK12831 292 VAMDAARTAL--RLGAEVHIVYRRSE--EELPA-RVEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP 365 (464)
T ss_pred HHHHHHHHHH--HcCCEEEEEeecCc--ccCCC-CHHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence 9999999888 56888999987653 11111 11222 34667899999999998886543 222 12211
Q ss_pred -----------CCc--EEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCC
Q 023975 202 -----------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 202 -----------~g~--~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
+|+ ++++|.||+|+|..|+..++.. .++ .++.+|++.+|+. ++| +.|+||++|||+..+..
T Consensus 366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~~ 441 (464)
T PRK12831 366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAAT 441 (464)
T ss_pred CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCchH
Confidence 222 6999999999999998887765 455 4667899999988 888 89999999999876544
No 52
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=7.1e-27 Score=193.02 Aligned_cols=247 Identities=19% Similarity=0.134 Sum_probs=155.2
Q ss_pred CCCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceee-eccccc-cccEEEEEeeE
Q 023975 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI-NHTDYL-VNGRIVASPAI 85 (274)
Q Consensus 9 ~~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 85 (274)
++...++|+|||+|++|+++|..|+ +|++|+++|+.+.+++.+... ............ ....+. .++++.....+
T Consensus 14 ~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v 91 (352)
T PRK12770 14 PPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEFRIPIERVREGVKELEEAGVVFHTRTKV 91 (352)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--CcccccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence 3445689999999999999999997 599999999998876432210 000000000000 000010 13333322222
Q ss_pred EEe-------c-----CeEEeCCCeEEecCEEEEccCCC-CC---CChhHHH----------------------------
Q 023975 86 NIT-------E-----NEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTE---------------------------- 121 (274)
Q Consensus 86 ~~~-------~-----~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~~---------------------------- 121 (274)
... . +.+..+ +..+.||++|+|||+. +. +|+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 92 CCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred eeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence 110 0 011111 1246899999999983 43 3332110
Q ss_pred ---HHHHccCCchhhhHHHHhhhhCCCCe-EEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee
Q 023975 122 ---RLNQYQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 197 (274)
Q Consensus 122 ---~~~~~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~ 197 (274)
.+..+++|.+++|+|..+. ..+.+ ++++.+.+.... .....+.+.++++||++++++.+.+++.++....
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~--~~g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAV--LLGAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence 1112234889999999887 34665 999887653211 1224455668899999999999999875543223
Q ss_pred EEC--------------------CCCcEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCCccccCCCCeEEe
Q 023975 198 YLT--------------------STGDTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAI 256 (274)
Q Consensus 198 v~~--------------------~~g~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~ 256 (274)
+.+ .+++++++|.||+++|..|+..+... .++ .++++|++.||+++++ +.|+||++
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vyai 321 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT-SREGVFAA 321 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-CCCCEEEE
Confidence 321 12357999999999999998876655 444 5667889999999998 89999999
Q ss_pred ccccCCCCCCC
Q 023975 257 GDITDIRVSAS 267 (274)
Q Consensus 257 Gd~~~~~~~~~ 267 (274)
|||++.+....
T Consensus 322 GD~~~~~~~~~ 332 (352)
T PRK12770 322 GDVVTGPSKIG 332 (352)
T ss_pred cccccCcchHH
Confidence 99998665443
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.94 E-value=3e-26 Score=204.90 Aligned_cols=238 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (274)
...++|+||||||||+++|+.|+ +|++|+|+|+.+.+|+... ..+... ..........++. .++++.....+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr---~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd 613 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK---NIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD 613 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee---eecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence 35689999999999999999998 4999999999988875432 111110 0001110111111 134443333221
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCCCC----CChhH------HH----------------HHHHccCCchhhhHHHHhh
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TE----------------RLNQYQAGPTGVELAGEIA 140 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~------~~----------------~~~~~~~g~~~~e~a~~l~ 140 (274)
+..++.....||+||+|||+.+. +|+.. .. ++..+++|.+|+|+|..+.
T Consensus 614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~ 688 (1019)
T PRK09853 614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL 688 (1019)
T ss_pred -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence 23334455679999999999732 22211 11 1222345999999998766
Q ss_pred hhCCC-CeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-----------------EECC
Q 023975 141 VDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-----------------YLTS 201 (274)
Q Consensus 141 ~~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~~ 201 (274)
+ ..+ .+|+++.+... ..+. ..+.+.+.+ +.||+++.++.+.++..+ +.+. +...
T Consensus 689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg 761 (1019)
T PRK09853 689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETG 761 (1019)
T ss_pred h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCC
Confidence 3 334 48999988653 2232 233444443 479999998888887532 2221 2233
Q ss_pred CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
++.++++|.||+|+|..|+.+++...++ .++++|++.||+.++| +.|+|||+|||+..|...
T Consensus 762 ~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~tv 823 (1019)
T PRK09853 762 ETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPSTI 823 (1019)
T ss_pred CeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCchHH
Confidence 3458999999999999999998876665 5677899999999998 899999999998766543
No 54
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.94 E-value=3.1e-26 Score=195.34 Aligned_cols=237 Identities=22% Similarity=0.232 Sum_probs=152.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 86 (274)
...++|+||||||+|+++|..|+ +|++|+|+|+.+.+|+.+.. .... ...........+++. ++++.....+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~---gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 214 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY---GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVG 214 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec---cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence 44689999999999999999997 59999999999887643211 1100 000000011111111 34443333221
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH----------H---------------HHHHHccCCchhhhHHH
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR----------T---------------ERLNQYQAGPTGVELAG 137 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~----------~---------------~~~~~~~~g~~~~e~a~ 137 (274)
..+..++. ...||++|+|||+. +. +|+.. . +++..+++|.+++|+|.
T Consensus 215 ---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~ 290 (457)
T PRK11749 215 ---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAAR 290 (457)
T ss_pred ---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHH
Confidence 11222222 36799999999985 33 23211 0 11122344889999999
Q ss_pred HhhhhCCCC-eEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc---eeEE-------------
Q 023975 138 EIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL------------- 199 (274)
Q Consensus 138 ~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~------------- 199 (274)
.+. ..+. +|+++.+.... ++. .....+.+++.||+++.++.+.++..+++. +.+.
T Consensus 291 ~l~--~~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~ 363 (457)
T PRK11749 291 TAK--RLGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRR 363 (457)
T ss_pred HHH--HcCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCc
Confidence 987 4555 89999876432 221 123456678899999999999998765543 2221
Q ss_pred ----CCCCcEEeecEEEEcccCCCCchhhc-ccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCC
Q 023975 200 ----TSTGDTINADCHFLCTGKPVGSDWLK-DTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 200 ----~~~g~~~~~d~vv~a~G~~~~~~~~~-~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
..+++++++|.||+|+|..|+..++. ..++ .++.+|++.+|. .++| +.|+||++|||+..+.
T Consensus 364 ~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl--~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~~ 431 (457)
T PRK11749 364 RVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL--ELNRWGTIIADDETGRT-SLPGVFAGGDIVTGAA 431 (457)
T ss_pred ccCCCCceEEEECCEEEECccCCCCchhhccccCc--cCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCch
Confidence 01234799999999999999876654 2334 567889999998 7887 8999999999996544
No 55
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=5.8e-26 Score=205.63 Aligned_cols=240 Identities=15% Similarity=0.174 Sum_probs=155.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
..++|+|||||||||+||+.|+ +|++|+|||+.+.+|+. +.+.+... ...+......+.+ .++++.....+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~---l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV---LRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce---EEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-
Confidence 4689999999999999999997 59999999999888743 22222111 1111111111111 144554433322
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH-------H-------------------------HHHHHccCCch
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------T-------------------------ERLNQYQAGPT 131 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~-------~-------------------------~~~~~~~~g~~ 131 (274)
+.+.+++.....||++++|||+. |. +|+.+ . +++..+++|.+
T Consensus 381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t 458 (944)
T PRK12779 381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT 458 (944)
T ss_pred --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence 23555555566899999999985 43 34321 0 11223445999
Q ss_pred hhhHHHHhhhhCCCCeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ce-eEEC-------
Q 023975 132 GVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SD-TYLT------- 200 (274)
Q Consensus 132 ~~e~a~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~------- 200 (274)
|+|+|..+. ..+++|+++.+... ..+ .....+.+ +.+.|++++++..++++..+++ .+ .+.+
T Consensus 459 A~D~A~ta~--R~Ga~Vtlv~rr~~~~mp----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~ 531 (944)
T PRK12779 459 AMDAARTAK--RLGGNVTIVYRRTKSEMP----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE 531 (944)
T ss_pred HHHHHHHHH--HcCCEEEEEEecCccccc----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence 999999988 67889999887643 122 12233333 4567999999998888865432 12 1111
Q ss_pred --C--------CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCCC
Q 023975 201 --S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 201 --~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
. +| .+++||.||+|+|+.|+..+ .....++.++++|.+.+|+ .++| +.|+|||+|||+..+...
T Consensus 532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~~v 608 (944)
T PRK12779 532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGSTA 608 (944)
T ss_pred ccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChHHH
Confidence 1 23 36999999999999997643 3333344667889999997 4777 899999999999765443
No 56
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.93 E-value=1.8e-25 Score=200.89 Aligned_cols=236 Identities=21% Similarity=0.251 Sum_probs=150.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
..++|+|||||||||+||+.|+ +|++|+|+|+.+.+|+... ..+... ..........+++ .++++.....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~---~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~--- 609 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK---NIIPEFRISAESIQKDIELVKFHGVEFKYGCS--- 609 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee---ecccccCCCHHHHHHHHHHHHhcCcEEEEecc---
Confidence 4589999999999999999998 4999999999988875432 111110 0001110111111 1334433211
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCCCC----CChh------HH----------------HHHHHccCCchhhhHHHHhhh
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKT------RT----------------ERLNQYQAGPTGVELAGEIAV 141 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~------~~----------------~~~~~~~~g~~~~e~a~~l~~ 141 (274)
..+..++.....||+|++|||+.+. +++. .. +++..+++|.+|+|+|..+..
T Consensus 610 --~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 610 --PDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred --cceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence 1122333345679999999998732 2221 01 112234559999999987763
Q ss_pred hCCC-CeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---------------CCCCc
Q 023975 142 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---------------TSTGD 204 (274)
Q Consensus 142 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---------------~~~g~ 204 (274)
..+ .+|+++.+... ..+. ..+.+.+.+ +.||++..+..+.+++ ++.+.+. ..+|+
T Consensus 688 -l~Ga~kVtLVyRr~~~~Mpa----~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Ge 759 (1012)
T TIGR03315 688 -VPGVEKVTVVYRRTKRYMPA----SREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGE 759 (1012)
T ss_pred -hCCCceEEEEEccCcccccc----CHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCC
Confidence 335 48999887653 2222 223444433 5799999888877775 2222211 11233
Q ss_pred --EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCCC
Q 023975 205 --TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 205 --~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+++||.||+|+|..|+..++...++ .++.+|++.+|+. ++| +.|+||++|||+..|...
T Consensus 760 e~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~tV 821 (1012)
T TIGR03315 760 TVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPATI 821 (1012)
T ss_pred eEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccHH
Confidence 6899999999999999998876555 5678899999986 787 899999999998666543
No 57
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=9.5e-26 Score=190.99 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=195.5
Q ss_pred CcEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEE-EeeE
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVA-SPAI 85 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~~~ 85 (274)
.+++|||.|++|..+...+. + -++++++-..++..+....++..+.+. ..++......+|+. +++++. ..++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 68999999999999987764 2 679999999998888877777776553 33444555556665 444433 3444
Q ss_pred EEe--cCeEEeCCCeEEecCEEEEccCCCCCCChhH------------HHHHH-------------HccCCchhhhHHHH
Q 023975 86 NIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLN-------------QYQAGPTGVELAGE 138 (274)
Q Consensus 86 ~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------~~~~~-------------~~~~g~~~~e~a~~ 138 (274)
.++ .+.|.++.|..+.||.|++|||+.|++++.+ .+.+. .+++|..++|.|..
T Consensus 84 ~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~ 163 (793)
T COG1251 84 QIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163 (793)
T ss_pred EeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHH
Confidence 554 4588899999999999999999998877632 11111 13348899999999
Q ss_pred hhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 139 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 139 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
|. ..+.++++++-.+.+.. +.++.....+++.+++.|++++++...+++...+....+.++||..+++|.||+|+|+
T Consensus 164 L~--~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 164 LK--DLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred HH--hCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 98 67888999988877654 6777788889999999999999999998888766677899999999999999999999
Q ss_pred CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+|+.++....++ ..+ .+|.||.+++| ++|+|||+|+|+.+....
T Consensus 242 rPn~ela~~aGl--avn--rGIvvnd~mqT-sdpdIYAvGEcae~~g~~ 285 (793)
T COG1251 242 RPNDELAKEAGL--AVN--RGIVVNDYMQT-SDPDIYAVGECAEHRGKV 285 (793)
T ss_pred ccccHhHHhcCc--CcC--CCeeecccccc-cCCCeeehhhHHHhcCcc
Confidence 999999988887 333 37999999999 899999999999765544
No 58
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=9.5e-25 Score=174.06 Aligned_cols=250 Identities=30% Similarity=0.384 Sum_probs=175.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecc----ccccccEEEEEeeEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAIN 86 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 86 (274)
..++|+|+|+|.+|.+.+..|- .-++|+|+.+.+++-++|-.-+.............+.. .......++......
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~ 133 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTK 133 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEe
Confidence 4589999999999999999997 58999999999998877654222221111111111111 111134555555555
Q ss_pred EecC--eEEe----CCC----eEEecCEEEEccCCCCCCChhH--------------HHHH-------------------
Q 023975 87 ITEN--EVLT----AEG----RRVVYDYLVIATGHKDPVPKTR--------------TERL------------------- 123 (274)
Q Consensus 87 ~~~~--~v~~----~~~----~~~~~~~li~a~G~~~~~~~~~--------------~~~~------------------- 123 (274)
+++. .+.+ .++ ..+.||+||+|+|+.+..++++ .+.+
T Consensus 134 iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~e 213 (491)
T KOG2495|consen 134 IDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDE 213 (491)
T ss_pred ecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChH
Confidence 5543 3332 333 5789999999999986544421 0000
Q ss_pred --------HHccCCchhhhHHHHhhhh--------CC----CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcC
Q 023975 124 --------NQYQAGPTGVELAGEIAVD--------FP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG 183 (274)
Q Consensus 124 --------~~~~~g~~~~e~a~~l~~~--------~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~ 183 (274)
-.+++|++|.|.|.+|.+. ++ ..+++++...+.+++.++..+.+...+.+.+.||.+..+
T Consensus 214 erkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~ 293 (491)
T KOG2495|consen 214 ERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTG 293 (491)
T ss_pred HhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecc
Confidence 1123399999999988753 22 247899999999999999999999999999999999999
Q ss_pred ceeeeeccCCCceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCC--cEEeCCCccccCCCCeEEeccc
Q 023975 184 ERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGDI 259 (274)
Q Consensus 184 ~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~i~~~Gd~ 259 (274)
+.|..+. +..+.+...+| ++|++..+|++||..| .++...... ..++.| ++.+|+.++.++.+||||+|||
T Consensus 294 t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~-rp~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGDc 368 (491)
T KOG2495|consen 294 TMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGP-RPVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGDC 368 (491)
T ss_pred cEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCC-chhhhhHhh--cCCccCceeeeeeceeeccCcCceEEeccc
Confidence 9999886 33555666666 4899999999999877 444444333 334455 8999999999999999999999
Q ss_pred cCCCCCC
Q 023975 260 TDIRVSA 266 (274)
Q Consensus 260 ~~~~~~~ 266 (274)
+..+..+
T Consensus 369 a~~~~~~ 375 (491)
T KOG2495|consen 369 ADQRGLK 375 (491)
T ss_pred cccccCc
Confidence 9554443
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=9e-26 Score=202.72 Aligned_cols=241 Identities=18% Similarity=0.156 Sum_probs=153.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 86 (274)
...++|+|||||||||+||+.|+ +|++|+|+|+.+.+|+... ..+.. .+.........+.+. ++++.....+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v- 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK---YGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV- 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence 34689999999999999999997 5999999999887764321 11110 011111101011111 3444333222
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH---------H---------------------HHHHHccCCchh
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR---------T---------------------ERLNQYQAGPTG 132 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~---------~---------------------~~~~~~~~g~~~ 132 (274)
.+.+.+++.....||++++|||+. |. +|+.+ . +++-.+++|.+|
T Consensus 505 --~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 582 (752)
T PRK12778 505 --GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582 (752)
T ss_pred --CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence 122334344456799999999984 44 33311 0 122234458999
Q ss_pred hhHHHHhhhhCCCCe-EEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ce-eEECC-------
Q 023975 133 VELAGEIAVDFPEKK-VTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS------- 201 (274)
Q Consensus 133 ~e~a~~l~~~~~~~~-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~------- 201 (274)
+|+|..+. ..+++ |+++.+.+.. .+. .... .+.+++.||+++.++.+.++..+++ .+ .+++.
T Consensus 583 ~d~A~~~~--r~Ga~~Vtlv~r~~~~~~~~----~~~e-~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 655 (752)
T PRK12778 583 MDSARTAK--RLGAERVTIVYRRSEEEMPA----RLEE-VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP 655 (752)
T ss_pred HHHHHHHH--HcCCCeEEEeeecCcccCCC----CHHH-HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence 99999887 56775 9999876531 221 1122 2457788999999998888865432 22 22221
Q ss_pred --C---------C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 202 --T---------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 202 --~---------g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+ | .+++||.||+|+|+.|+..++... .++.++.+|++.+|++++| +.|+|||+|||+..+...
T Consensus 656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~~v 731 (752)
T PRK12778 656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGATV 731 (752)
T ss_pred CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcHHH
Confidence 1 2 269999999999999987665442 1235677899999999988 899999999999765443
No 60
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.92 E-value=6.4e-24 Score=180.12 Aligned_cols=232 Identities=21% Similarity=0.342 Sum_probs=164.5
Q ss_pred HHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeec--cccc--cccEEE-EEeeEEEe--cCeEEeC
Q 023975 27 LVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPAINIT--ENEVLTA 95 (274)
Q Consensus 27 ~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~~~~~--~~~v~~~ 95 (274)
+||..|+ ++++|+|||+++.+.+.+..+......... .+....+ ..+. .++++. ...+..++ .+.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 4677776 368999999999877655434333322211 1111111 1121 145553 34555555 3344443
Q ss_pred ---CCeEEe--cCEEEEccCCCCCCChhHH---------------H------------HHHHccCCchhhhHHHHhhhhC
Q 023975 96 ---EGRRVV--YDYLVIATGHKDPVPKTRT---------------E------------RLNQYQAGPTGVELAGEIAVDF 143 (274)
Q Consensus 96 ---~~~~~~--~~~li~a~G~~~~~~~~~~---------------~------------~~~~~~~g~~~~e~a~~l~~~~ 143 (274)
++..+. ||++|+|||+.|..|+.+. . ++..+++|.+++|+|..+. .
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~--~ 158 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR--E 158 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH--h
Confidence 234677 9999999999865443211 0 1122344889999999888 5
Q ss_pred CCCeEEEEeCCCccC-CcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975 144 PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 222 (274)
Q Consensus 144 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 222 (274)
.+.+++++.+.+.++ +..++.+...+.+.+++.||+++.++.+.++..++. + +.+.+|+++++|.+|+|+|..|+.+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence 688999999988763 566778888899999999999999999999975433 3 4567788999999999999999999
Q ss_pred hhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 223 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 223 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
++...++ .++++|++.||++++| +.|+||++|||++.+..
T Consensus 237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~ 276 (427)
T TIGR03385 237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI 276 (427)
T ss_pred HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence 8877665 5677899999999998 89999999999986543
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.92 E-value=1.5e-24 Score=185.32 Aligned_cols=243 Identities=17% Similarity=0.156 Sum_probs=148.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 86 (274)
...++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+.+. ..+... ..........+++. ++++.....+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~---~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR---YGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee---ecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 34589999999999999999997 5999999999988874321 111100 00000001111111 34443333221
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhHHH------------------------------HHHHccCCchh
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTE------------------------------RLNQYQAGPTG 132 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~~------------------------------~~~~~~~g~~~ 132 (274)
.+ +.. +.....||++++|+|+. +. +|+.+.. ++..+++|+++
T Consensus 218 ~~---~~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g 293 (471)
T PRK12810 218 KD---ITA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG 293 (471)
T ss_pred Cc---CCH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence 11 001 11134799999999997 43 3332110 11123348999
Q ss_pred hhHHHHhhhhCCC-CeEEEEeCCCccCCcC-C----hhHH-HHHHHHHHhCCcEEEcCceeeeeccCCCcee-EE-----
Q 023975 133 VELAGEIAVDFPE-KKVTLVHKGSRLLEFI-G----PKAG-DKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL----- 199 (274)
Q Consensus 133 ~e~a~~l~~~~~~-~~v~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~----- 199 (274)
+|+|..+. ..+ .+++.....+...... . +... ....+.+++.||++++++.++++..+++.+. |+
T Consensus 294 ~e~A~~~~--~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~ 371 (471)
T PRK12810 294 MDCVGTAI--RQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTE 371 (471)
T ss_pred HHHHHHHH--HcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEE
Confidence 99998766 344 4777554433221110 0 0011 1134567788999999999999975444332 22
Q ss_pred CCCC---------cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeC-CCccccCCCCeEEeccccCCCCC
Q 023975 200 TSTG---------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 200 ~~~g---------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
..+| +++++|.||+|+|..|+. .++...++ .++.+|.+.+| ++++| +.|+||++|||++.+..
T Consensus 372 ~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~~ 445 (471)
T PRK12810 372 LGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQSL 445 (471)
T ss_pred ecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCchh
Confidence 2222 479999999999999874 46655554 56778999998 68888 89999999999975543
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=190.30 Aligned_cols=238 Identities=19% Similarity=0.197 Sum_probs=150.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
..++|+||||||+||++|+.|+ .|++|+|+|+.+.+|+.+. ..+... ..........+.+ .++++.....+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~---~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~ 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR---YGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee---ecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence 4589999999999999999998 5999999999998875432 111100 0000000000111 1333332222111
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH-------H---------------HHHHccCCchhhhHHHHhhh
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-------E---------------RLNQYQAGPTGVELAGEIAV 141 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~-------~---------------~~~~~~~g~~~~e~a~~l~~ 141 (274)
.+...+. ...||++++|||+.+ .+|+.+. . ++..+++|.+++|+|..+.
T Consensus 269 ---dv~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~- 343 (652)
T PRK12814 269 ---DITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTAL- 343 (652)
T ss_pred ---ccCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHH-
Confidence 1112111 235999999999873 2333211 1 1112344899999999877
Q ss_pred hCCCC-eEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---C---------------C
Q 023975 142 DFPEK-KVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---T---------------S 201 (274)
Q Consensus 142 ~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~---------------~ 201 (274)
..+. +|+++.+... .++.. ...+.+. .+.||+++.++.+.++..+++...+. + .
T Consensus 344 -~~Ga~~Vtlv~r~~~~~mpa~----~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~ 417 (652)
T PRK12814 344 -RLGAESVTILYRRTREEMPAN----RAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPV 417 (652)
T ss_pred -HcCCCeEEEeeecCcccCCCC----HHHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceec
Confidence 4454 7999887653 23322 2233333 45799999999888887555443221 1 1
Q ss_pred CCc--EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCCC
Q 023975 202 TGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 202 ~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+|+ ++++|.||+|+|..|+..++...++ .++.+|++.+|+ .++| +.|+|||+|||+..+...
T Consensus 418 ~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~v 482 (652)
T PRK12814 418 EGSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADIA 482 (652)
T ss_pred CCceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchHH
Confidence 222 6899999999999999888876665 566789999997 4777 899999999999766543
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=192.40 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=147.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
+.++|+|||||||||+||..|+ +|++|+|||+.+.+|+. +...+... ...+......+.+ .++++.....+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~---l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg- 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV---LQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG- 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce---eeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-
Confidence 4689999999999999999997 59999999999888742 21111111 0011111111111 144444333221
Q ss_pred ecCeEEeCCCe-EEecCEEEEccCCC-CC---CChhHH-------------------------------HHHHHccCCch
Q 023975 88 TENEVLTAEGR-RVVYDYLVIATGHK-DP---VPKTRT-------------------------------ERLNQYQAGPT 131 (274)
Q Consensus 88 ~~~~v~~~~~~-~~~~~~li~a~G~~-~~---~~~~~~-------------------------------~~~~~~~~g~~ 131 (274)
..+..++.. ...||+||+|||+. |. +|+... +++..+++|++
T Consensus 505 --~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 505 --KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred --CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 112221111 24699999999984 43 343110 11222345999
Q ss_pred hhhHHHHhhhhCCCC-eEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC--------
Q 023975 132 GVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT-------- 200 (274)
Q Consensus 132 ~~e~a~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------- 200 (274)
|+|+|..+. ..|+ .|+++.+....- . +... .-.+.+++.||++++++.+.++..++ +.+ .+.+
T Consensus 583 A~D~A~~a~--rlGa~~Vtiv~rr~~~e--m-~a~~-~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~ 656 (1006)
T PRK12775 583 AMDCLRVAK--RLGAPTVRCVYRRSEAE--A-PARI-EEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP 656 (1006)
T ss_pred HHHHHHHHH--HcCCCEEEEEeecCccc--C-CCCH-HHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence 999887776 4555 577776643211 1 1111 12245777899999999988886433 322 2221
Q ss_pred -C--------CC--cEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCC-----CccccCCCCeEEeccccCCC
Q 023975 201 -S--------TG--DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR 263 (274)
Q Consensus 201 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~-----~~~~~~~~~i~~~Gd~~~~~ 263 (274)
. +| .++++|.||+|+|..|+..++.. .++ .++.+|.+.+|+ .++| +.|+|||+|||+..+
T Consensus 657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~ 733 (1006)
T PRK12775 657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGL--ALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGG 733 (1006)
T ss_pred CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCc--ccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCc
Confidence 1 12 26999999999999998776543 234 566789999996 6787 899999999998765
Q ss_pred CC
Q 023975 264 VS 265 (274)
Q Consensus 264 ~~ 265 (274)
..
T Consensus 734 ~~ 735 (1006)
T PRK12775 734 AT 735 (1006)
T ss_pred cH
Confidence 54
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=1.1e-23 Score=186.66 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=148.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (274)
+.++|+|||||||||++|..|+ .|++|+|+|+.+.+|+... ..+.. .+.........+++. ++++.....+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT---FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee---ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence 4689999999999999999998 4999999999988874322 11111 000111100111111 233322221111
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH---------------------------------HHHHHccCCc
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT---------------------------------ERLNQYQAGP 130 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~---------------------------------~~~~~~~~g~ 130 (274)
.+..++ ....||.+++|+|+.. .+|+... +++..+++|.
T Consensus 403 ---~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 403 ---DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred ---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 111111 1246999999999852 2222110 0112234488
Q ss_pred hhhhHHHHhhhhCCCC-eEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC------
Q 023975 131 TGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT------ 200 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------ 200 (274)
+++|+|..+. ..++ +|+++.+.+.. .+. .....+.+++.||++++++.+.++..++ +.+ .+++
T Consensus 479 ~a~d~A~~a~--r~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 551 (654)
T PRK12769 479 TAMDCVRTAL--RHGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLG 551 (654)
T ss_pred HHHHHHHHHH--HcCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEec
Confidence 9999988765 3454 78988876542 221 2233456788999999999888886432 322 2222
Q ss_pred ---CCC---------c--EEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeCC----CccccCCCCeEEeccccC
Q 023975 201 ---STG---------D--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITD 261 (274)
Q Consensus 201 ---~~g---------~--~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~~----~~~~~~~~~i~~~Gd~~~ 261 (274)
.+| + ++++|.||+|+|+.|+. .++...++ .++.+|.+.+|. +++| +.++|||+||++.
T Consensus 552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~ 628 (654)
T PRK12769 552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVR 628 (654)
T ss_pred CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence 122 2 69999999999999974 45555554 677889999986 4788 8999999999987
Q ss_pred CCCCC
Q 023975 262 IRVSA 266 (274)
Q Consensus 262 ~~~~~ 266 (274)
.+...
T Consensus 629 g~~~v 633 (654)
T PRK12769 629 GADLV 633 (654)
T ss_pred CCcHH
Confidence 66553
No 65
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-23 Score=161.43 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=169.8
Q ss_pred CCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC--CCceeeccceeeecC----------------Cc---------
Q 023975 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK--EYFEITWASLRAMVE----------------PS--------- 61 (274)
Q Consensus 10 ~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~--~~~g~~~~~~~~~~~----------------~~--------- 61 (274)
.+-.||.+|||||.+||+||.+.+. |.+|.++|-- ...|..|+.-....+ ..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3446999999999999999999985 9999999832 223333432111000 00
Q ss_pred -cccc-ee-------------eeccccccccEE-------EEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCCCCC
Q 023975 62 -FGKR-SV-------------INHTDYLVNGRI-------VASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV 115 (274)
Q Consensus 62 -~~~~-~~-------------~~~~~~~~~~~~-------~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~~~~ 115 (274)
..+. .. ....+|...+++ ++.....++.+.+.. ..+ +.+.++.+++|||.+|..
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY 175 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY 175 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence 0000 00 000111111222 222223333333322 223 467889999999999887
Q ss_pred ChhHH--------HHH----------HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCC
Q 023975 116 PKTRT--------ERL----------NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177 (274)
Q Consensus 116 ~~~~~--------~~~----------~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (274)
|+++. +.+ ...++++.++|+|..|. -.+..+++..|+ .++.+++.++++.+.+.+++.|
T Consensus 176 p~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~G 252 (503)
T KOG4716|consen 176 PDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERG 252 (503)
T ss_pred CCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHhC
Confidence 76442 111 22334899999999998 678888888775 4567899999999999999999
Q ss_pred cEEEcCceeeeeccCCCc-eeEEC---CCC--cEEeecEEEEcccCCCCchhhcccccccccC-CCCcEEeCCCccccCC
Q 023975 178 VDVKLGERVNLDSVSEGS-DTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQ 250 (274)
Q Consensus 178 v~i~~~~~v~~i~~~~~~-~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~ 250 (274)
+.+.....+..++..+++ ..|.. ..+ -+-++|.|++|.|..+..+-+.....+..++ ..|.|.+|+.-+| +.
T Consensus 253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~v 331 (503)
T KOG4716|consen 253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NV 331 (503)
T ss_pred CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CC
Confidence 999999888888866543 33332 222 2578999999999999877666555555554 3577899998888 89
Q ss_pred CCeEEecccc-CCCCCCCCCC
Q 023975 251 KNIFAIGDIT-DIRVSASMIF 270 (274)
Q Consensus 251 ~~i~~~Gd~~-~~~~~~~~~~ 270 (274)
|.|||+||+. +.|-+.++++
T Consensus 332 p~vyAvGDIl~~kpELTPvAI 352 (503)
T KOG4716|consen 332 PYVYAVGDILEDKPELTPVAI 352 (503)
T ss_pred CceEEecceecCCcccchhhh
Confidence 9999999997 4555555544
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=1.8e-23 Score=178.15 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=147.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (274)
+.++|+||||||+|+++|..|+ +|++|+++|+.+.+|+... ..+.. ...........+++. ++++.....+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~---~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v-- 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT---FGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV-- 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee---ecCccccCCHHHHHHHHHHHHHCCCEEECCCEe--
Confidence 4689999999999999999997 5999999999988774321 11111 000110001111111 2333222211
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCCCC----CChhHHH---------------------------------HHHHccCCc
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTE---------------------------------RLNQYQAGP 130 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~~~---------------------------------~~~~~~~g~ 130 (274)
.. .+..++ ....||.+++|||+.+. +|+.+.+ .+..+++|.
T Consensus 215 ~~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 292 (467)
T TIGR01318 215 GR-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD 292 (467)
T ss_pred CC-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence 10 111111 12479999999998752 3331110 111123378
Q ss_pred hhhhHHHHhhhhCCC-CeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC------
Q 023975 131 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT------ 200 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------ 200 (274)
++++.|..+. ..+ .+|+++.+.+.. .+.. ....+.+++.||+++.++.+.++..++ +.+ .+++
T Consensus 293 ~a~d~A~~a~--~~Ga~~Vtvv~r~~~~~~~~~-----~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 365 (467)
T TIGR01318 293 TAMDCVRTAI--RLGAASVTCAYRRDEANMPGS-----RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG 365 (467)
T ss_pred HHHHHHHHHH--HcCCCeEEEEEecCcccCCCC-----HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence 8999888766 455 479999876542 2221 223345677899999999998886433 222 1221
Q ss_pred ---CC---------C--cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeC----CCccccCCCCeEEeccccC
Q 023975 201 ---ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITD 261 (274)
Q Consensus 201 ---~~---------g--~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~----~~~~~~~~~~i~~~Gd~~~ 261 (274)
.+ | .++++|.||+|+|+.|+. .++...++ .++++|++.+| .+++| +.++||++|||++
T Consensus 366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence 01 2 378999999999999974 45555444 56778999999 57887 7999999999997
Q ss_pred CCCC
Q 023975 262 IRVS 265 (274)
Q Consensus 262 ~~~~ 265 (274)
.+..
T Consensus 443 ~~~~ 446 (467)
T TIGR01318 443 GADL 446 (467)
T ss_pred CccH
Confidence 6654
No 67
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.89 E-value=4.9e-22 Score=182.60 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=149.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc----cccceeeeccccccccEEEE-EeeEE
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS----FGKRSVINHTDYLVNGRIVA-SPAIN 86 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (274)
.+||+|||||||||+||..|+ .|++|+|+|+++.+|+.+.......... +.......... +.++++.. ..++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~v~v~~~t~V~~ 241 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA-MPEVTLLPRTTAFG 241 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc-CCCcEEEcCCEEEE
Confidence 579999999999999999997 5999999999988875443211111000 00000000000 11233332 12222
Q ss_pred EecC-eE--------E--------e-CCCeEEecCEEEEccCCCCCCCh---hHH---------------------HHHH
Q 023975 87 ITEN-EV--------L--------T-AEGRRVVYDYLVIATGHKDPVPK---TRT---------------------ERLN 124 (274)
Q Consensus 87 ~~~~-~v--------~--------~-~~~~~~~~~~li~a~G~~~~~~~---~~~---------------------~~~~ 124 (274)
+... .+ . . +....+.++++|+|||+.+..++ .+. +++.
T Consensus 242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv 321 (985)
T TIGR01372 242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV 321 (985)
T ss_pred EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence 2111 00 0 0 11126889999999999854432 111 1111
Q ss_pred HccCCchhhhHHHHhhhhCCC-CeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC--
Q 023975 125 QYQAGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-- 201 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-- 201 (274)
.+++|..++++|..|. ..+ ..++++...+. +...+.+.+++.||++++++.+.++..++....|++.
T Consensus 322 ViG~G~~g~e~A~~L~--~~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~ 391 (985)
T TIGR01372 322 VATNNDSAYRAAADLL--AAGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN 391 (985)
T ss_pred EECCCHHHHHHHHHHH--HcCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence 2344889999999988 456 45677766543 2345677888999999999999999765543334433
Q ss_pred --CCcEEeecEEEEcccCCCCchhhcccccccccCCC--CcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 202 --TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH--GMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 202 --~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
++++++||.|+++.|..|+.+++...++.+.+++. +++. .| +.++||++||+++....
T Consensus 392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t-~v~gVyaaGD~~g~~~~ 453 (985)
T TIGR01372 392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD-AVQGCILAGAANGLFGL 453 (985)
T ss_pred CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC-CCCCeEEeeccCCccCH
Confidence 45689999999999999999998877765444432 2211 14 68999999999987644
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.87 E-value=4e-22 Score=176.01 Aligned_cols=237 Identities=17% Similarity=0.205 Sum_probs=145.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (274)
+.++|+||||||+||++|+.|+ .|++|+|+|+.+.+|+.+ ...+.+. +.........+++. ++++.....+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l---~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~- 384 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGML---TFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG- 384 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCee---eccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC-
Confidence 4689999999999999999997 599999999999887432 2111111 11110100111111 23332222111
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH---------------------------------HHHHHccCCc
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT---------------------------------ERLNQYQAGP 130 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~---------------------------------~~~~~~~~g~ 130 (274)
..+..++ ....||.+++|+|+.+ .+|+.+. +++..+++|.
T Consensus 385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 1111211 2346899999999863 2232110 0111123377
Q ss_pred hhhhHHHHhhhhCCC-CeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC---C--
Q 023975 131 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT---S-- 201 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~---~-- 201 (274)
++++.+..+. ..+ .+|+++.+.+.. .+.. ...+ +.+++.||++++++.++++..++ +.+ .+.+ .
T Consensus 462 ~a~d~a~~~~--~~Ga~~Vt~v~rr~~~~~~~~----~~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 462 TTMDCLRTSI--RLNAASVTCAYRRDEVSMPGS----RKEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred HHHHHHHHHH--HcCCCeEEEeeecCcccCCCC----HHHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence 8889887655 345 489998876543 2221 2222 23567899999999998887443 322 1211 0
Q ss_pred ----CC-----------cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeCC----CccccCCCCeEEeccccC
Q 023975 202 ----TG-----------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITD 261 (274)
Q Consensus 202 ----~g-----------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~~----~~~~~~~~~i~~~Gd~~~ 261 (274)
+| .++++|.||+|+|+.|+. .++...++ .++.+|.+.+|+ .++| +.|+|||+||++.
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 12 268999999999998864 45554444 567789999985 3788 8999999999987
Q ss_pred CCCC
Q 023975 262 IRVS 265 (274)
Q Consensus 262 ~~~~ 265 (274)
.+..
T Consensus 612 g~~~ 615 (639)
T PRK12809 612 GADL 615 (639)
T ss_pred CchH
Confidence 6654
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.3e-22 Score=153.21 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=162.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEE-cCCCCceeeccce---eeecC------CccccceeeeccccccccEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLI-DPKEYFEITWASL---RAMVE------PSFGKRSVINHTDYLVNGRIV 80 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vi-e~~~~~g~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~ 80 (274)
..|||+||||||||.++|.+.+ +|.+.-++ || +|+..-.. ..++. +.+....-.+..+| .+++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer---fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDim 284 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVM 284 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh---hCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhh
Confidence 3599999999999999997775 58876555 33 55332111 11111 11110000111111 11111
Q ss_pred EE-eeEEEe-------cCeEEeCCCeEEecCEEEEccCCC---CCCCh-------------------hHHHHHHHccCCc
Q 023975 81 AS-PAINIT-------ENEVLTAEGRRVVYDYLVIATGHK---DPVPK-------------------TRTERLNQYQAGP 130 (274)
Q Consensus 81 ~~-~~~~~~-------~~~v~~~~~~~~~~~~li~a~G~~---~~~~~-------------------~~~~~~~~~~~g~ 130 (274)
.. +...+. -..+.+++|-.+..+.+|++||++ -.+|+ +..+++..+++|+
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN 364 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN 364 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence 00 111111 117889999999999999999987 34454 3356777788899
Q ss_pred hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEEC---CCCc-
Q 023975 131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLT---STGD- 204 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~- 204 (274)
++.|.|..|+ -.-.+|+++.-.+.+. ....+.+++++ .++.+.+|.+.++|..+++.+ .+.. .+|+
T Consensus 365 SGvEAAIDLA--Giv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 365 SGVEAAIDLA--GIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred chHHHHHhHH--hhhheeeeeecchhhh------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 9999999887 4456888887655432 44567777776 589999999999999886543 2332 2232
Q ss_pred -EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 205 -TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 205 -~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
.++-+-|++-.|-.||++|++.. . .+++.|-|.||....| +.|+|||+|||+..|..
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~-v--el~~rGEIivD~~g~T-svpGvFAAGD~T~~~yK 494 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGA-V--ELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYK 494 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhch-h--hcCcCccEEEecCCCc-CCCceeecCcccCCccc
Confidence 67889999999999999999886 3 5778999999999999 89999999999987764
No 70
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-21 Score=143.38 Aligned_cols=238 Identities=19% Similarity=0.239 Sum_probs=157.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec-cceeeecC----Ccccccee-------eeccccccccE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW-ASLRAMVE----PSFGKRSV-------INHTDYLVNGR 78 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~-~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~ 78 (274)
.+.+|+|||+|||+-++|+++++ ..+.+|+|-.-.-+..+ +.+..... +.|..-.. +.......+.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 34699999999999999998875 88999999543222111 11211110 11110000 00000111345
Q ss_pred EEEEeeEEEecC----eEEeCCCeEEecCEEEEccCCCC---CCChh-----------------------HHHHHHHccC
Q 023975 79 IVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKD---PVPKT-----------------------RTERLNQYQA 128 (274)
Q Consensus 79 ~~~~~~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~---~~~~~-----------------------~~~~~~~~~~ 128 (274)
++...+..++.. .+.+ +.+.+.+|.+|+|||+.. .+|+. +++-+..+++
T Consensus 87 i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG 165 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG 165 (322)
T ss_pred eeeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence 555555444422 4555 455789999999999873 23432 1233344555
Q ss_pred CchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHH-hCCcEEEcCceeeeeccCCC---ceeE---ECC
Q 023975 129 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEG---SDTY---LTS 201 (274)
Q Consensus 129 g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~---~~~v---~~~ 201 (274)
|.+++|-|..|. ..+.+|++++|.+.+. .+..|.++.+ ..+|++++|+.+.+...++. ++.+ .+.
T Consensus 166 GDsA~EEA~fLt--kyaskVyii~Rrd~fR------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tg 237 (322)
T KOG0404|consen 166 GDSAMEEALFLT--KYASKVYIIHRRDHFR------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTG 237 (322)
T ss_pred cHHHHHHHHHHH--hhccEEEEEEEhhhhh------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccC
Confidence 899999999998 5688999999988754 4556666554 46899999999888776643 2222 233
Q ss_pred CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCC
Q 023975 202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDI 262 (274)
Q Consensus 202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~ 262 (274)
+-+.++.+-+++++|..|++.+++. .. .+|.+|.+.+-+. ..| ++|++||+||+...
T Consensus 238 e~~dl~v~GlFf~IGH~Pat~~l~g-qv--e~d~~GYi~t~pgts~T-svpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 238 EETDLPVSGLFFAIGHSPATKFLKG-QV--ELDEDGYIVTRPGTSLT-SVPGVFAAGDVQDK 295 (322)
T ss_pred cccccccceeEEEecCCchhhHhcC-ce--eeccCceEEeccCcccc-cccceeeccccchH
Confidence 3357999999999999999999987 33 6789999988755 445 89999999999753
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=158.21 Aligned_cols=247 Identities=25% Similarity=0.350 Sum_probs=179.6
Q ss_pred EEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccc--cccccEEEE-EeeEEEe
Q 023975 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTD--YLVNGRIVA-SPAINIT 88 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~-~~~~~~~ 88 (274)
++|||+|++|+++|..|. .+.+++++.+.+...+....+......... ......... ...++.+.. ..+..++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 589999999999998775 477888888877665444433332222111 000111000 112344433 2344444
Q ss_pred --cCeEEeCCCeEEecCEEEEccCCCCCCCh-------------hHH----------HHHHHccCCchhhhHHHHhhhhC
Q 023975 89 --ENEVLTAEGRRVVYDYLVIATGHKDPVPK-------------TRT----------ERLNQYQAGPTGVELAGEIAVDF 143 (274)
Q Consensus 89 --~~~v~~~~~~~~~~~~li~a~G~~~~~~~-------------~~~----------~~~~~~~~g~~~~e~a~~l~~~~ 143 (274)
.+.+.+.++ ++.||++++|||+.+..++ ... +.+...++|..++++|..+. .
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~--~ 157 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA--K 157 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH--H
Confidence 457888888 8999999999999977652 001 12222445999999999998 6
Q ss_pred CCCeEEEEeCCCccCCcCC-hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee---EECCCCcEEeecEEEEcccCCC
Q 023975 144 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 144 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.|.+++++...+++.+... +.+.+.+.+.+++.||+++++..+.+++...+... +...++..+++|.+++++|..|
T Consensus 158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 7899999999999888666 78999999999999999999999999987766443 5777888999999999999999
Q ss_pred CchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975 220 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~ 266 (274)
+..+....+.. ....+|++.||+.+++...++||++|||+..+...
T Consensus 238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~ 283 (415)
T COG0446 238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283 (415)
T ss_pred cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeeccc
Confidence 87766665422 25577899999999982389999999999877665
No 72
>PRK13984 putative oxidoreductase; Provisional
Probab=99.87 E-value=1.9e-21 Score=171.48 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=144.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 86 (274)
...++|+|||+|++|+++|..|+ +|++|+|+|+.+.+++.+. ..+... ..........+.+. ++++.....+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~---~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR---YGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe---ecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 34689999999999999999997 4999999999988764322 111110 00000000011111 23332222221
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCCC----CCChhH----------H-----------------HHHHHccCCchhhhH
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR----------T-----------------ERLNQYQAGPTGVEL 135 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~----------~-----------------~~~~~~~~g~~~~e~ 135 (274)
.+ +..+. ....||++|+|+|+.+ .+|+.. . +++..+++|.+|+|+
T Consensus 358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~ 433 (604)
T PRK13984 358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI 433 (604)
T ss_pred Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence 11 11111 1357999999999752 333321 0 122334458999999
Q ss_pred HHHhhhhC----CCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--------C-
Q 023975 136 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S- 201 (274)
Q Consensus 136 a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~- 201 (274)
|..+.... ...+++++..... ...++. ....+.+ +.+.||+++++..+.++..+++.+ .+++ .
T Consensus 434 A~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~-~~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~ 510 (604)
T PRK13984 434 ARSMARLQKMEYGEVNVKVTSLERT-FEEMPA-DMEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE 510 (604)
T ss_pred HHHHHhccccccCceEEEEeccccC-cccCCC-CHHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence 99887321 1236776532211 111111 1223333 346899999998887776444332 2221 1
Q ss_pred ----------CCcEEeecEEEEcccCCCCchhhccc-ccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 202 ----------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 202 ----------~g~~~~~d~vv~a~G~~~~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
+.+++++|.||+|+|+.|+..++... +..+.. ++|++.||++++| +.|+|||+|||+..+.
T Consensus 511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~ 582 (604)
T PRK13984 511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD 582 (604)
T ss_pred CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH
Confidence 12379999999999999998877542 222233 4688999999998 8999999999997664
No 73
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.87 E-value=6.2e-22 Score=169.43 Aligned_cols=243 Identities=18% Similarity=0.183 Sum_probs=141.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (274)
..++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+.. ...+.. ...........+++. ++++.....+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l---~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL---MYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee---eccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 3479999999999999999997 599999999998776321 111110 000011111111111 344433222211
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhHH--------------------------------HHHHHccCCch
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRT--------------------------------ERLNQYQAGPT 131 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~--------------------------------~~~~~~~~g~~ 131 (274)
+ +.. +.....||.+++|||+. |. +|+.+. +++..+++|++
T Consensus 219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 1 111 11235799999999987 43 332110 01112344889
Q ss_pred hhhHHHHhhhhCCCCeEEEEeCCCccCCcCC-----hh------HHHHHHHHHHhCCcEE-EcCceeeeeccCC-Cce-e
Q 023975 132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GSD-T 197 (274)
Q Consensus 132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gv~i-~~~~~v~~i~~~~-~~~-~ 197 (274)
++|+|..+.. .....++++...+....... +. ....+.+..+..|+.+ ..+..+.++..++ +.+ .
T Consensus 295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~ 373 (485)
T TIGR01317 295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA 373 (485)
T ss_pred HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence 9998766552 34468998887665432110 11 1122333344456544 3466666665432 222 2
Q ss_pred EEC--------CCC-----------cEEeecEEEEcccCC-CCchhhcccccccccCCCCcEEe-CCCccccCCCCeEEe
Q 023975 198 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAI 256 (274)
Q Consensus 198 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~i~~~ 256 (274)
+.+ ++| .++++|.||+|+|.. |+..++...++ .++.+|++.+ |+.++| +.++||++
T Consensus 374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa 450 (485)
T TIGR01317 374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA 450 (485)
T ss_pred EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence 221 122 279999999999985 77788776655 4567788855 567888 89999999
Q ss_pred ccccCCCCC
Q 023975 257 GDITDIRVS 265 (274)
Q Consensus 257 Gd~~~~~~~ 265 (274)
|||+..+..
T Consensus 451 GD~~~g~~~ 459 (485)
T TIGR01317 451 GDCRRGQSL 459 (485)
T ss_pred eccCCCcHH
Confidence 999876544
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.85 E-value=1.6e-20 Score=158.67 Aligned_cols=245 Identities=15% Similarity=0.109 Sum_probs=142.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccccce--eeecccccc--ccEEEEEe
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRS--VINHTDYLV--NGRIVASP 83 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 83 (274)
...++|+||||||||++||..|+ +|++|+|||+.+.+|+ .++....+.+.... ...+..++. ++++....
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv 100 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNV 100 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCE
Confidence 34579999999999999999985 4999999999998873 33333322221100 001111111 23333222
Q ss_pred eEEEecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH-----------------------------HHHHHccCCc
Q 023975 84 AINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-----------------------------ERLNQYQAGP 130 (274)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~-----------------------------~~~~~~~~g~ 130 (274)
.+. ..+..++. ...||++|+|+|+.+ .+|+.+. +++-.+++|+
T Consensus 101 --~vg-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGn 176 (491)
T PLN02852 101 --TLG-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGN 176 (491)
T ss_pred --EEC-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCH
Confidence 222 12333333 347999999999863 2444210 1112234499
Q ss_pred hhhhHHHHhhhh------------------C-CCCeEEEEeCCCccCCcCC------------------h-h--------
Q 023975 131 TGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLEFIG------------------P-K-------- 164 (274)
Q Consensus 131 ~~~e~a~~l~~~------------------~-~~~~v~~~~~~~~~~~~~~------------------~-~-------- 164 (274)
.++|+|..+... . .-.+|+++.|....-..+. + +
T Consensus 177 vAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~ 256 (491)
T PLN02852 177 VALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDE 256 (491)
T ss_pred HHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchh
Confidence 999999887621 1 2247888887653100000 0 0
Q ss_pred -----------HHHHHHHHHHh---------CCcEEEcCceeeeeccC--C-Cce-eEECC-----------------CC
Q 023975 165 -----------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GSD-TYLTS-----------------TG 203 (274)
Q Consensus 165 -----------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~-~~~-~v~~~-----------------~g 203 (274)
..+.+.+...+ .++.+++.....+|... + +.+ .+++. +|
T Consensus 257 ~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tg 336 (491)
T PLN02852 257 EELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTG 336 (491)
T ss_pred hhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCC
Confidence 11222222222 47888888888888632 1 222 22211 23
Q ss_pred c--EEeecEEEEcccCC--CCchh-hcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975 204 D--TINADCHFLCTGKP--VGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 264 (274)
Q Consensus 204 ~--~~~~d~vv~a~G~~--~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~ 264 (274)
+ +++||.||.+.|+. |...+ +.. ..++..+.+|++.+|..++| +.|+||++|||...|.
T Consensus 337 e~~~i~~D~Vi~aIG~~~~p~~~l~f~~-~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~ 400 (491)
T PLN02852 337 EFEDLPCGLVLKSIGYKSLPVDGLPFDH-KRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT 400 (491)
T ss_pred CEEEEECCEEEEeecCCCCCCCCCcccc-CcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence 2 68999999999997 44432 221 11224567899999988887 7999999999987554
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.85 E-value=7.3e-21 Score=161.16 Aligned_cols=232 Identities=17% Similarity=0.246 Sum_probs=138.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee------------------c-------C------
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------V-------E------ 59 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~------------------~-------~------ 59 (274)
..++|+|||||++||+||++|+ .|++|+|+|+++.+|+.|...... . .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999997 599999999999999888432100 0 0
Q ss_pred Ccccc-----------ceeeecc---cccc------ccE--E-EEEeeEEEec--C--eEEeCCC----eEEecCEEEEc
Q 023975 60 PSFGK-----------RSVINHT---DYLV------NGR--I-VASPAINITE--N--EVLTAEG----RRVVYDYLVIA 108 (274)
Q Consensus 60 ~~~~~-----------~~~~~~~---~~~~------~~~--~-~~~~~~~~~~--~--~v~~~~~----~~~~~~~li~a 108 (274)
..+.. ..+.... +++. ++. + ....+..+.. . .|.+.++ .+..||+||+|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 00000 0000100 1111 111 1 2233444432 2 3444322 24579999999
Q ss_pred cCC--CCCCChhH----------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChh
Q 023975 109 TGH--KDPVPKTR----------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 164 (274)
Q Consensus 109 ~G~--~~~~~~~~----------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (274)
+|. .|.+|.++ .+++..+++|.+|+|+|.+|. ..+++|+++.+...+..
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~--~~a~~V~l~~r~~~~~~----- 241 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIA--KVAKEVHIASRASESDT----- 241 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHH--HhCCeEEEEEeeccccc-----
Confidence 994 46555422 122333455999999999998 55789999988653211
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN 244 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 244 (274)
...+......+..+..|..+..++ .|++.||+.+++|.||+|||+.++.+|+...+. +..+.+.-..+..+
T Consensus 242 -----~~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly~~ 312 (461)
T PLN02172 242 -----YEKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLYKH 312 (461)
T ss_pred -----cccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhHHh
Confidence 011111233455566666554322 488899999999999999999999999875332 12222221123333
Q ss_pred ccccC-CCCeEEeccc
Q 023975 245 LRVKG-QKNIFAIGDI 259 (274)
Q Consensus 245 ~~~~~-~~~i~~~Gd~ 259 (274)
.-.+. .|+++.+|=.
T Consensus 313 ~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 313 VFPPALAPGLSFIGLP 328 (461)
T ss_pred hcCCCCCCcEEEEecc
Confidence 22223 4899999965
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.85 E-value=7.1e-21 Score=166.29 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=143.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEE
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAIN 86 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (274)
...++|+|||+||+||++|+.|+ .|++|+++|+.+.+|+.+. ..+... +..+......+.. .++++.......
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 34689999999999999999997 5999999999998875332 111100 0000000000111 122322221110
Q ss_pred EecCeEEeCCCeEEecCEEEEccCCCCC----CChhH-------H---------------HHHHHccCCchhhhHHHHhh
Q 023975 87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------T---------------ERLNQYQAGPTGVELAGEIA 140 (274)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~-------~---------------~~~~~~~~g~~~~e~a~~l~ 140 (274)
.+ +..+ .....||.+++|+|.... ++... . +++..+++|.++++.+..+.
T Consensus 212 ~~---~~~~-~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~ 287 (564)
T PRK12771 212 ED---ITLE-QLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTAR 287 (564)
T ss_pred Cc---CCHH-HHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHH
Confidence 00 0000 012358999999998632 22210 0 11122334778888887655
Q ss_pred hhCCCCeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-e-----EEC----CC-------
Q 023975 141 VDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-----YLT----ST------- 202 (274)
Q Consensus 141 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-----v~~----~~------- 202 (274)
+ .....++++.+.+.. .+. ....+. .+.+.|++++++..+.++..++++. . +.. .+
T Consensus 288 ~-lga~~v~ii~r~~~~~~~~----~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~ 361 (564)
T PRK12771 288 R-LGAEEVTIVYRRTREDMPA----HDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT 361 (564)
T ss_pred H-cCCCEEEEEEecCcccCCC----CHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence 2 333678888776531 111 222333 3456899999999999987654332 1 221 12
Q ss_pred C--cEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCC
Q 023975 203 G--DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 203 g--~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
| .++++|.||+|+|..|+..++.. .++ . +++|++.+|. .++| +.++||++|||+..+..
T Consensus 362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~~~ 424 (564)
T PRK12771 362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGPRT 424 (564)
T ss_pred CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCchH
Confidence 2 37999999999999998888774 444 3 5789999998 5666 89999999999875543
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.83 E-value=4.4e-20 Score=142.32 Aligned_cols=250 Identities=19% Similarity=0.258 Sum_probs=153.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeec--cceeeecCCccccceeeeccccc-cccEEEEEee
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITW--ASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPA 84 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (274)
..+++|+|||||.+|++.|..+.+ .-+|.|+|..+.-.+.+ ......+... ........+.. .+..+++..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l--~~srr~~a~liP~~a~wi~ekv 114 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL--DSSRRKQASLIPKGATWIKEKV 114 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh--hhccCcccccccCCcHHHHHHH
Confidence 357899999999999999988862 45899999877533222 2111111100 00000111111 1223333444
Q ss_pred EEEe--cCeEEeCCCeEEecCEEEEccCCCC---CCChhH--------------------HHHHHHccCCc-------hh
Q 023975 85 INIT--ENEVLTAEGRRVVYDYLVIATGHKD---PVPKTR--------------------TERLNQYQAGP-------TG 132 (274)
Q Consensus 85 ~~~~--~~~v~~~~~~~~~~~~li~a~G~~~---~~~~~~--------------------~~~~~~~~~g~-------~~ 132 (274)
..++ ++.+.+.+|+++.||++|+|+|.+- .++++. .+.++.+..|+ ..
T Consensus 115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp 194 (446)
T KOG3851|consen 115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP 194 (446)
T ss_pred HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence 4444 4489999999999999999999872 223211 12223332211 11
Q ss_pred hhHH----------HHhhhh---CCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE
Q 023975 133 VELA----------GEIAVD---FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL 199 (274)
Q Consensus 133 ~e~a----------~~l~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~ 199 (274)
+.+| ....++ +.++++.....-+.++ .-....+.+.+..++++|++.+...+.++..++.....+
T Consensus 195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe 272 (446)
T KOG3851|consen 195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE 272 (446)
T ss_pred cccCCCchhhhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH
Confidence 1111 111111 1122333332222222 123467888888899999999999998887665543333
Q ss_pred C-CC-C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCCCCC
Q 023975 200 T-ST-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSASM 268 (274)
Q Consensus 200 ~-~~-g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~~~~ 268 (274)
. .+ | ++++++.+-+.+...+ ++++....+ .|..|++.||.. +|+..+||||++|||.+.|+.++.
T Consensus 273 ~L~kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTa 342 (446)
T KOG3851|consen 273 NLDKPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTA 342 (446)
T ss_pred hcCCCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhH
Confidence 1 22 4 3788999888877665 677776665 678999999954 888899999999999999999764
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.82 E-value=3.6e-19 Score=141.99 Aligned_cols=250 Identities=19% Similarity=0.272 Sum_probs=173.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceee----ecCCcc-----------c-cceeeeccc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRA----MVEPSF-----------G-KRSVINHTD 72 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~----~~~~~~-----------~-~~~~~~~~~ 72 (274)
++...+|||+|-+..+++...+ .+.+|++|...+.+-+....+.. .-++.. . ...+++-..
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 4678999999999888888775 48899999766654322111111 101110 0 011111111
Q ss_pred cc-----------cccEEEEE-eeEEEe--cCeEEeCCCeEEecCEEEEccCCCCCCChh-------------------H
Q 023975 73 YL-----------VNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT-------------------R 119 (274)
Q Consensus 73 ~~-----------~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~-------------------~ 119 (274)
|+ .++.++.+ .++.++ .+.|.+++|.++.||.+++|||..|..... +
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 11 12333333 233444 448999999999999999999998753320 1
Q ss_pred HHHH----------HHccCCchhhhHHHHhhhhCC--CCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975 120 TERL----------NQYQAGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV 186 (274)
Q Consensus 120 ~~~~----------~~~~~g~~~~e~a~~l~~~~~--~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v 186 (274)
.+++ ..+++|..+.|++..|.+++. +.+|+-+........ -.+.-++++-.+++++.||.++.|..|
T Consensus 337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v 416 (659)
T KOG1346|consen 337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKV 416 (659)
T ss_pred HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence 1222 224458999999998886554 446665554433222 223457788889999999999999999
Q ss_pred eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCC-CcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975 187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~ 265 (274)
.++......+.+.++||.++..|.||+|+|..||.++....++. +|++ |+++||.-++. -.|||++||++-....
T Consensus 417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe--iD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~ 492 (659)
T KOG1346|consen 417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE--IDEKLGGFRVNAELKA--RENVWVAGDAACFEDG 492 (659)
T ss_pred hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccce--eecccCcEEeeheeec--ccceeeecchhhhhcc
Confidence 99998888899999999999999999999999999999988885 4443 78999999986 8999999999855544
No 79
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=134.61 Aligned_cols=247 Identities=20% Similarity=0.283 Sum_probs=149.2
Q ss_pred cEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceee--ccceeeecC-Ccccc----ceeeeccccccccEEEEEee
Q 023975 15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT--WASLRAMVE-PSFGK----RSVINHTDYLVNGRIVASPA 84 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~--~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~ 84 (274)
+.+|||||+||.+||..|+ +..+++++..++..-.. +.....++. ....+ .....++.+...+. .
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~-----~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVV-----T 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhh-----h
Confidence 3689999999999998886 58899999987754210 000101100 00001 11111111111110 1
Q ss_pred EEEecCeEEeCCCeEEecCEEEEccCCCCCCChh------------H-----------HHHHHHccCCchhhhHHHHhhh
Q 023975 85 INITENEVLTAEGRRVVYDYLVIATGHKDPVPKT------------R-----------TERLNQYQAGPTGVELAGEIAV 141 (274)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~------------~-----------~~~~~~~~~g~~~~e~a~~l~~ 141 (274)
++-..+-+.+.+|..+-|++|++++|..|...-. + .+.+..++.|.+++|+..++.
T Consensus 76 ~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk- 154 (334)
T KOG2755|consen 76 WDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK- 154 (334)
T ss_pred hccccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh-
Confidence 1222346888899999999999999999754221 0 122233444888888888875
Q ss_pred hCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhC------------CcEEEcCce-----------------------
Q 023975 142 DFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISK------------KVDVKLGER----------------------- 185 (274)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------gv~i~~~~~----------------------- 185 (274)
..+|+|....+.+.. .++++..+.+...+... .++.+.+++
T Consensus 155 ---~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~e 231 (334)
T KOG2755|consen 155 ---ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISE 231 (334)
T ss_pred ---cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchh
Confidence 678888887776644 34455444443333100 111111110
Q ss_pred ------------eeeeccCCCceeEEC---CCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCcccc
Q 023975 186 ------------VNLDSVSEGSDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 248 (274)
Q Consensus 186 ------------v~~i~~~~~~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 248 (274)
+..+....+...+.. ..+ ..+.||.+|.|+|..|+.+++-...+ ...++|++.||..|++
T Consensus 232 seer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t- 308 (334)
T KOG2755|consen 232 SENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET- 308 (334)
T ss_pred hhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-
Confidence 000000001111111 111 26889999999999999997766555 5678999999999999
Q ss_pred CCCCeEEeccccCCCCCCCCCCCCC
Q 023975 249 GQKNIFAIGDITDIRVSASMIFPQV 273 (274)
Q Consensus 249 ~~~~i~~~Gd~~~~~~~~~~~~~~~ 273 (274)
+.|++|++||++......+..|.|+
T Consensus 309 slpdvFa~gDvctt~~~~s~~wqQm 333 (334)
T KOG2755|consen 309 SLPDVFAAGDVCTTTWEPSTLWQQM 333 (334)
T ss_pred cccceeeecceeccCCCCchhhhcc
Confidence 8999999999999888888888886
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.77 E-value=5.6e-18 Score=145.52 Aligned_cols=39 Identities=36% Similarity=0.493 Sum_probs=33.0
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
++|+|||||++||++|+.|. .|++++++||++.+|+.|.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 68999999999999999987 5999999999999999985
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=2e-16 Score=126.53 Aligned_cols=253 Identities=18% Similarity=0.176 Sum_probs=161.9
Q ss_pred CCCCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCceeeccceee--------------ecCCcc-----------
Q 023975 10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA--------------MVEPSF----------- 62 (274)
Q Consensus 10 ~~~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~g~~~~~~~~--------------~~~~~~----------- 62 (274)
+...+|++.||-||+-|+.|..|+. +.+++.+||.+.+.+.++.+-. +.++..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3456899999999999999999973 7899999999987655443311 000000
Q ss_pred --------ccceeeeccc----------cccccEE----EEEeeEEEecC---eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 63 --------GKRSVINHTD----------YLVNGRI----VASPAINITEN---EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 63 --------~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~---~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.+.......+ .+...++ .....+..+.. .+.+.++..++++.+|+++|..|.+|+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 0000000000 0111111 11111111111 356667779999999999999999987
Q ss_pred hH----------------------HH-HHHHccCCchhhhHHHHhhhhCCCC--eEEEEeCCCccCCcC---------Ch
Q 023975 118 TR----------------------TE-RLNQYQAGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFI---------GP 163 (274)
Q Consensus 118 ~~----------------------~~-~~~~~~~g~~~~e~a~~l~~~~~~~--~v~~~~~~~~~~~~~---------~~ 163 (274)
.- .+ .+..+++|++|.|+...|....+.. ++.|+.|+..+.|.. .|
T Consensus 162 ~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P 241 (436)
T COG3486 162 CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSP 241 (436)
T ss_pred HHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCc
Confidence 21 11 1445667999999999887555544 488899988775521 22
Q ss_pred hHHHH------------------------------HHHHH-------HhCCcEEEcCceeeeeccCCCc-eeEECC----
Q 023975 164 KAGDK------------------------------TRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLTS---- 201 (274)
Q Consensus 164 ~~~~~------------------------------~~~~~-------~~~gv~i~~~~~v~~i~~~~~~-~~v~~~---- 201 (274)
+.++. +.+.+ .+..+.+..+++|..++..+++ +.+.+.
T Consensus 242 ~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~ 321 (436)
T COG3486 242 EYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHET 321 (436)
T ss_pred hhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccC
Confidence 22211 11111 1346889999999999988865 555432
Q ss_pred -CCcEEeecEEEEcccCCCC-chhhcccccccccCCCCcEEeCCCccccC----CCCeEEeccccCC
Q 023975 202 -TGDTINADCHFLCTGKPVG-SDWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDI 262 (274)
Q Consensus 202 -~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~i~~~Gd~~~~ 262 (274)
+.++++.|.||+|||+... +.|+....-.+.++++|.+.|++++.... .-.||+.|-+...
T Consensus 322 ~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 322 GELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred CCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 2348899999999999744 45777765455788999999999877632 2369999877543
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.73 E-value=2.3e-19 Score=137.13 Aligned_cols=34 Identities=38% Similarity=0.434 Sum_probs=30.6
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
||+|||||+||++||.+|+ ++++++++|+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~ 35 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTP 35 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 7999999999999999998 599999999987543
No 83
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.71 E-value=6.4e-16 Score=123.88 Aligned_cols=162 Identities=21% Similarity=0.156 Sum_probs=100.2
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecCe
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENE 91 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (274)
.+||+|||||||||.||..+++ |++|+|||+.+.+|-.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrK----------------------------------------- 41 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRK----------------------------------------- 41 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccce-----------------------------------------
Confidence 4799999999999999999975 9999999999988711
Q ss_pred EEeCCCeEEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC--cCChhHHHHH
Q 023975 92 VLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKT 169 (274)
Q Consensus 92 v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~ 169 (274)
+..+.|.+.++-......-....+|+ ....+......++.-++-..+. ..+..... ....+.+| .-...+.+.+
T Consensus 42 il~sGgGrCN~Tn~~~~~~~ls~~p~-~~~fl~sal~~ft~~d~i~~~e--~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~l 117 (408)
T COG2081 42 ILMSGGGRCNFTNSEAPDEFLSRNPG-NGHFLKSALARFTPEDFIDWVE--GLGIALKE-EDLGRMFPDSDKASPIVDAL 117 (408)
T ss_pred eEecCCCCccccccccHHHHHHhCCC-cchHHHHHHHhCCHHHHHHHHH--hcCCeeEE-ccCceecCCccchHHHHHHH
Confidence 11111111111000000000001111 0111221111222233333332 23333322 12233344 2334688999
Q ss_pred HHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc--CCC
Q 023975 170 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPV 219 (274)
Q Consensus 170 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~ 219 (274)
...+++.||+++++++|.+++.++....+.+++|+++.||.+|+|+| ..|
T Consensus 118 l~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 118 LKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred HHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 99999999999999999999988888999999999999999999999 455
No 84
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.68 E-value=8.2e-16 Score=125.20 Aligned_cols=132 Identities=21% Similarity=0.203 Sum_probs=84.0
Q ss_pred hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC---C--cE
Q 023975 131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---G--DT 205 (274)
Q Consensus 131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~ 205 (274)
.++..|..+.+++|..+++++.-+-+-. +...-+.+.+.-++.||++..+..-.-.+..++...|+.+| | .+
T Consensus 386 ~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e 462 (622)
T COG1148 386 VSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKE 462 (622)
T ss_pred HHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCcccee
Confidence 4456667777778888888776554322 22233344444447899998876443333344444665444 3 37
Q ss_pred EeecEEEEcccCCCCc--hhhcccccccccCCCCcEEeC-CCccc--cCCCCeEEeccccCCCCCC
Q 023975 206 INADCHFLCTGKPVGS--DWLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 206 ~~~d~vv~a~G~~~~~--~~~~~~~~~~~~~~~g~~~v~-~~~~~--~~~~~i~~~Gd~~~~~~~~ 266 (274)
+++|.||+++|..|.. +-+. ..+++..+++|++.-. +.++. .+.++||.+|-+.++-..+
T Consensus 463 ~~~DLVVLa~Gmep~~g~~kia-~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~ 527 (622)
T COG1148 463 IEADLVVLATGMEPSEGAKKIA-KILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIA 527 (622)
T ss_pred cccceEEEeeccccCcchHHHH-HhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHH
Confidence 8999999999988742 2221 2344578889998765 44443 2679999999998876654
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.64 E-value=4.7e-16 Score=126.98 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=108.6
Q ss_pred CCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCceeeccceeee--cC------------Cc--ccc----------
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRAM--VE------------PS--FGK---------- 64 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~g~~~~~~~~~--~~------------~~--~~~---------- 64 (274)
.+|+++||.||++|+.|..|.. ..+++++|+.+.+...++.+... ++ +. +..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 3799999999999999999973 68999999998876444332110 00 00 000
Q ss_pred ------c-e---eeec-------cccccc-cEEEEEeeEEEe----c----CeEEeC----CCeEEecCEEEEccCCCCC
Q 023975 65 ------R-S---VINH-------TDYLVN-GRIVASPAINIT----E----NEVLTA----EGRRVVYDYLVIATGHKDP 114 (274)
Q Consensus 65 ------~-~---~~~~-------~~~~~~-~~~~~~~~~~~~----~----~~v~~~----~~~~~~~~~li~a~G~~~~ 114 (274)
. . ..++ .+.+.+ +.+ ...+..+. . -.|.+. ++..+.++.||+|+|..|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence 0 0 0000 011122 222 22222222 1 144442 4568899999999999888
Q ss_pred CChhH------------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC---------
Q 023975 115 VPKTR------------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--------- 161 (274)
Q Consensus 115 ~~~~~------------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~--------- 161 (274)
+|..- .+++..+++|.+|.|++..|....+..+++++.|++.+.+..
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f 240 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIF 240 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGG
T ss_pred CCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhc
Confidence 87621 112233566999999999998766667999999988763321
Q ss_pred C-------------------------------hhHHHHHHHH-----H-HhCCcEEEcCceeeeeccCC-CceeEECCC-
Q 023975 162 G-------------------------------PKAGDKTRDW-----L-ISKKVDVKLGERVNLDSVSE-GSDTYLTST- 202 (274)
Q Consensus 162 ~-------------------------------~~~~~~~~~~-----~-~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~- 202 (274)
. +++.+.+.+. + .+..+.++.+++|+.++..+ +.+.+.+.+
T Consensus 241 ~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~ 320 (341)
T PF13434_consen 241 SPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHR 320 (341)
T ss_dssp SHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEET
T ss_pred CchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEEC
Confidence 1 1222222222 2 22357899999999998887 477776654
Q ss_pred --C--cEEeecEEEEcccCC
Q 023975 203 --G--DTINADCHFLCTGKP 218 (274)
Q Consensus 203 --g--~~~~~d~vv~a~G~~ 218 (274)
+ .++++|.||+|||+.
T Consensus 321 ~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 321 QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp TT--EEEEEESEEEE---EE
T ss_pred CCCCeEEEecCEEEEcCCcc
Confidence 2 478999999999985
No 86
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.60 E-value=1.7e-15 Score=127.18 Aligned_cols=245 Identities=22% Similarity=0.116 Sum_probs=145.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCcccc-ceeeecccccc--ccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLV--NGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~ 87 (274)
+.++|+||||||+||++|..|++ |++|+++|+.+..| +.+.+-+...... +......+++. +++|.....+..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G---Gll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~ 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG---GLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc---eeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence 34899999999999999999984 99999999999988 3333332222111 11111222222 244433333322
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH---------------H----------------HHHHHccCCchh
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR---------------T----------------ERLNQYQAGPTG 132 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~---------------~----------------~~~~~~~~g~~~ 132 (274)
+ ++.+.- .-.||++++++|.. |. +|+.+ . +++..+++|.++
T Consensus 199 ~---it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta 274 (457)
T COG0493 199 D---ITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTA 274 (457)
T ss_pred c---CCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCH
Confidence 1 222111 23569999999976 22 23211 0 222234448999
Q ss_pred hhHHHHhhhhCCCC-eEEEEeCCCccCC-c-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Ccee-E---E--CC-
Q 023975 133 VELAGEIAVDFPEK-KVTLVHKGSRLLE-F-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDT-Y---L--TS- 201 (274)
Q Consensus 133 ~e~a~~l~~~~~~~-~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v---~--~~- 201 (274)
+|++.... ..++ .++.+.+...--. . ....-.....+.+...|+.........++..++ +.+. + . ..
T Consensus 275 ~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~ 352 (457)
T COG0493 275 MDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE 352 (457)
T ss_pred HHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence 99997665 5565 6665542211100 0 011123445566777888888777777776533 2221 1 1 10
Q ss_pred -------------CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCc-cccCCCCeEEeccccCCCCC
Q 023975 202 -------------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 202 -------------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~i~~~Gd~~~~~~~ 265 (274)
.| ..+.+|.|+.|.|+.+...........+..+..|.+.++... +| +.+++|+.||+......
T Consensus 353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g~~~ 431 (457)
T COG0493 353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRGAAL 431 (457)
T ss_pred cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccchhh
Confidence 12 267899999999988764432222223356788999999998 77 89999999999875444
Q ss_pred C
Q 023975 266 A 266 (274)
Q Consensus 266 ~ 266 (274)
.
T Consensus 432 v 432 (457)
T COG0493 432 V 432 (457)
T ss_pred h
Confidence 3
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.59 E-value=8e-14 Score=118.03 Aligned_cols=147 Identities=24% Similarity=0.324 Sum_probs=94.5
Q ss_pred CCCCCCcEEEEcCChHHHHHHHHhhc-CCc-EEEEcCCCCceeeccceee-----ecCCccccc---------eeeecc-
Q 023975 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRA-----MVEPSFGKR---------SVINHT- 71 (274)
Q Consensus 9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~g~~~~~~~~-----~~~~~~~~~---------~~~~~~- 71 (274)
+...++||+|||||++||++|++|++ |.+ ++|+||++.+|+.|...++ ........- .+..+.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 34457899999999999999999974 887 9999999999988654221 111110000 000000
Q ss_pred --c----ccc------ccEEE-EEeeEEEecC----eEEeCCCeE--EecCEEEEccCCC--CCCChh------------
Q 023975 72 --D----YLV------NGRIV-ASPAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKT------------ 118 (274)
Q Consensus 72 --~----~~~------~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~li~a~G~~--~~~~~~------------ 118 (274)
+ ++. .+.+. .......+.+ .|.++++.. +.++.||+|||.. |.+|.+
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 0 000 11211 1122333322 566766655 4599999999975 555552
Q ss_pred ----------HHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc
Q 023975 119 ----------RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL 157 (274)
Q Consensus 119 ----------~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~ 157 (274)
..+++..++.|.||++++.++. ..+++|+++.|++..
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~--~~ga~vt~~qRs~~~ 210 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELA--EVGASVTLSQRSPPH 210 (443)
T ss_pred hhcCCCccccCCCeEEEECCCccHHHHHHHHH--hcCCeeEEEecCCCc
Confidence 2455666777999999999998 456999999988754
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=5.1e-14 Score=117.79 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=38.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL 54 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~ 54 (274)
+.++|+|||||+|||++|++|. .|++++++||.+.+|+.|.-.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 3579999999999999999997 599999999999999888543
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.53 E-value=4.1e-13 Score=112.33 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=91.8
Q ss_pred CchhhhHH-HHhhh--hCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeE-ECCCCc
Q 023975 129 GPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTGD 204 (274)
Q Consensus 129 g~~~~e~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g~ 204 (274)
+..|+|.+ ..+.. ...+.+++.+...+..++.. .+.+.+.+.+++.|++++.+++|.+++.+++.+.+ ...+|+
T Consensus 224 avIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~ 301 (422)
T PRK05329 224 AVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG 301 (422)
T ss_pred ceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc
Confidence 66777877 33321 24688999988877766643 58888999999999999999999999876665543 344443
Q ss_pred --EEeecEEEEcccCCCCchhh------cc--cccccccCC-----------------CCcEEeCCCccc------cCCC
Q 023975 205 --TINADCHFLCTGKPVGSDWL------KD--TILKDSLDT-----------------HGMLMVDENLRV------KGQK 251 (274)
Q Consensus 205 --~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~~~~-----------------~g~~~v~~~~~~------~~~~ 251 (274)
.+.+|.||+|+|..+...+. .+ .++++...+ .-++.+|+.++. +..+
T Consensus 302 ~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~ 381 (422)
T PRK05329 302 DIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIE 381 (422)
T ss_pred eEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeecc
Confidence 58999999999976543331 11 112111000 113667766664 1479
Q ss_pred CeEEeccccCCCCCC
Q 023975 252 NIFAIGDITDIRVSA 266 (274)
Q Consensus 252 ~i~~~Gd~~~~~~~~ 266 (274)
|+|++|++.+.+++.
T Consensus 382 nl~a~G~vl~g~d~~ 396 (422)
T PRK05329 382 NLYAAGAVLGGYDPI 396 (422)
T ss_pred ceEEeeehhcCCchH
Confidence 999999998877664
No 90
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.53 E-value=1.1e-14 Score=128.65 Aligned_cols=94 Identities=28% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC-Cccccceeeeccccc--cccEEEEEeeEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYL--VNGRIVASPAINI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (274)
+.++|+|||+||+||+||-.|.+ ||.|+|+||.+..| +.+.+.+. ...+........+++ ++++|+....+.-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g---gll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG---GLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC---ceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence 35899999999999999999976 99999999999998 44433322 111111111222222 2445543332221
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCC
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHK 112 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~ 112 (274)
+ +.. ++..-.+|.+|+|+|+.
T Consensus 1861 --~-vs~-d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 --H-VSL-DELKKENDAIVLATGST 1881 (2142)
T ss_pred --c-ccH-HHHhhccCeEEEEeCCC
Confidence 1 222 22234679999999986
No 91
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.53 E-value=1.1e-13 Score=123.70 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
...++|+|||||||||+||++|+ +|++|+++|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 35689999999999999999997 5999999998754
No 92
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.50 E-value=1.8e-13 Score=114.12 Aligned_cols=162 Identities=18% Similarity=0.193 Sum_probs=82.5
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecCeE
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEV 92 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 92 (274)
|||+|||||+|||.||+.|+ +|++|+|+||++.+|-..... -.... .+.+ ...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~t---G~GrC---------------N~tn---~~~----- 54 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILIT---GNGRC---------------NLTN---LNI----- 54 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC---GGGT----------------EEEE---TTS-----
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeec---CCCCc---------------cccc---ccc-----
Confidence 79999999999999999997 599999999999887211000 00000 0000 000
Q ss_pred EeCCCeEEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC--ChhHHHHHH
Q 023975 93 LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--GPKAGDKTR 170 (274)
Q Consensus 93 ~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~ 170 (274)
+-..+... .+..+... ...+..+. .-++...+. ..+... ....+.++.|.. ...+.+.+.
T Consensus 55 ---~~~~~~~~-----~~~~~~f~---~~~l~~f~----~~d~~~ff~--~~Gv~~-~~~~~gr~fP~s~~a~~Vv~~L~ 116 (409)
T PF03486_consen 55 ---DPSEFLSG-----YGRNPKFL---KSALKRFS----PEDLIAFFE--ELGVPT-KIEEDGRVFPKSDKASSVVDALL 116 (409)
T ss_dssp ---SGGGEECS------TBTTTCT---HHHHHHS-----HHHHHHHHH--HTT--E-EE-STTEEEETT--HHHHHHHHH
T ss_pred ---chhhHhhh-----cccchHHH---HHHHhcCC----HHHHHHHHH--hcCCeE-EEcCCCEECCCCCcHHHHHHHHH
Confidence 00001000 11111111 12222221 223333333 223322 233444555533 346778889
Q ss_pred HHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975 171 DWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 171 ~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+++.||+++++++|.+++.+++. +.|.+++++++.||.||+|+|-..
T Consensus 117 ~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 117 EELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 9999999999999999999887766 778887778999999999999544
No 93
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.38 E-value=1.2e-11 Score=104.92 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
.+.+.+.+.+++.|++++.+++|++++.+++.+.....+|+++.||.||.|+|..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 3667788888889999999999999876665554444567789999999999974
No 94
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.37 E-value=1.9e-11 Score=102.60 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCcEEEEcCChHHHHHHHHh-h-cCCcEEEEcCCCCceeeccceeeecCCccccc-eee-eccccc--cccEEEEEeeE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSL-Q-FSADVTLIDPKEYFEITWASLRAMVEPSFGKR-SVI-NHTDYL--VNGRIVASPAI 85 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L-~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~~~ 85 (274)
..++|+||||||||+.||.+| + .|++|+|+||.+.++ +.++..+.+..... ... .+...+ .++++.. .+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g--nv 112 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG--NV 112 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe--ee
Confidence 357899999999999999876 3 499999999999988 44444444322110 010 111111 1233331 12
Q ss_pred EEecCeEEeCCCeEEecCEEEEccCCCC
Q 023975 86 NITENEVLTAEGRRVVYDYLVIATGHKD 113 (274)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~li~a~G~~~ 113 (274)
.+.. .+..++- ...||.+|+|+|+.+
T Consensus 113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 113 HVGV-DLKMEEL-RNHYNCVIFCCGASE 138 (506)
T ss_pred EecC-ccCHHHH-HhcCCEEEEEcCCCC
Confidence 2221 1222222 237999999999773
No 95
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.37 E-value=1.6e-12 Score=108.01 Aligned_cols=64 Identities=23% Similarity=0.147 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~ 228 (274)
..+.+.+.+.+++.|++++.+++|+++..+++.+. |.+++|+ +.+|.||+|+|... ..++...+
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~ 211 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLG 211 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeeccc
Confidence 46888899999999999999999999998888877 9999997 99999999999865 34454443
No 96
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.37 E-value=3.1e-13 Score=103.35 Aligned_cols=138 Identities=28% Similarity=0.395 Sum_probs=73.7
Q ss_pred EEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCceeeccceee---ecCCcccc-----c-----------------eeee
Q 023975 17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRA---MVEPSFGK-----R-----------------SVIN 69 (274)
Q Consensus 17 ~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~~~g~~~~~~~~---~~~~~~~~-----~-----------------~~~~ 69 (274)
+||||||+||++|.+|. .|.+ ++|+|+++.+|+.|..... ...+.... . ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 69999999999999997 5999 9999999999988764211 11111000 0 0000
Q ss_pred cc---cccc------ccEEE-EEeeEEEe--cC--eEEeCCCeEEecCEEEEccCC--CCCCChhHH-------------
Q 023975 70 HT---DYLV------NGRIV-ASPAINIT--EN--EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT------------- 120 (274)
Q Consensus 70 ~~---~~~~------~~~~~-~~~~~~~~--~~--~v~~~~~~~~~~~~li~a~G~--~~~~~~~~~------------- 120 (274)
.. +++. +..+. ...+..+. .. .+.+.++..+.+++||+|||. .|..|.++.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~ 160 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR 160 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence 00 0000 12221 12222222 22 677778878999999999996 455554322
Q ss_pred -------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCc
Q 023975 121 -------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR 156 (274)
Q Consensus 121 -------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~ 156 (274)
+.+..+++|.+|++++..|. ..+.+|+++.|.+.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~--~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALA--KAGKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHT--TTCSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHH--hhCCEEEEEecCCC
Confidence 12222344889999999988 45789999998764
No 97
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.34 E-value=2e-11 Score=102.71 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE-CCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+++.+..++.|++++.++.+..+..+++...+. ..++.++.++.||.|.|...
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 66788999999999999999999999887665544 33346899999999999643
No 98
>PRK06847 hypothetical protein; Provisional
Probab=99.33 E-value=6.5e-11 Score=99.20 Aligned_cols=59 Identities=22% Similarity=0.101 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
..+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 35677788888888999999999999987777788888899999999999999976543
No 99
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.33 E-value=1.9e-11 Score=95.95 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g 48 (274)
..+||+||||||+||+||+.|++ |.+|+|+||+..+|
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46899999999999999999985 99999999998876
No 100
>PRK10015 oxidoreductase; Provisional
Probab=99.33 E-value=3.4e-11 Score=102.13 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
+.+.+.+.+++.|++++.+++|+++..+++.+.....++.++.||.||.|.|..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 566788888889999999999999876655554333445679999999999963
No 101
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.30 E-value=2e-11 Score=102.46 Aligned_cols=63 Identities=21% Similarity=0.075 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~ 228 (274)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|... ..+....+
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g 208 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhcc
Confidence 5677788888889999999999999987777777777766 799999999999754 34443333
No 102
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.29 E-value=1e-10 Score=98.58 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+++.|+++..++++++++.+++.+.+++++|+++.+|.||.|.|....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 467778888888999999999999998887778888888889999999999998764
No 103
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.29 E-value=2.8e-11 Score=101.97 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+.+.+.+.+++.|++++.+++|.+++.+++.+.+.+.+| ++.+|.||+|+|...
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 45788888889999999999999999987776677777776 799999999999865
No 104
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=101.32 Aligned_cols=202 Identities=17% Similarity=0.136 Sum_probs=107.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceeeec-CCccccceeeeccccccccEEEEEee--E
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMV-EPSFGKRSVINHTDYLVNGRIVASPA--I 85 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 85 (274)
+++||+|||||+.|+++|+.|++ + ++|+|+||.+.++...+...+.. ...++.... +....+.. .... .
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~----slka~l~~-~g~~~~~ 76 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG----SLKAKLCV-AGNINEF 76 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCc----chhhHHHH-HHHHHHH
Confidence 35899999999999999999983 4 99999999998874332211110 000000000 00000000 0000 0
Q ss_pred EEecCeEEeCCCeEEecCEEEEccCCCCCCChhHHHHHHH-ccC-Cc---hhhhHHHHhhhhCCCCe----EEEEeCCCc
Q 023975 86 NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ-YQA-GP---TGVELAGEIAVDFPEKK----VTLVHKGSR 156 (274)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~-~~~-g~---~~~e~a~~l~~~~~~~~----v~~~~~~~~ 156 (274)
.+-+ .+ .-......++++|+|....- . .+.+.+ ... +. .-++ ..++.+..|... -.+......
T Consensus 77 ~~~k-q~---~~~f~~~g~l~vA~~e~e~~-~--L~~l~~~~~~ngv~~~~~ld-~~~i~~~eP~l~~~~~aal~~p~~g 148 (429)
T COG0579 77 AICK-QL---GIPFINCGKLSVATGEEEVE-R--LEKLYERGKANGVFDLEILD-KEEIKELEPLLNEGAVAALLVPSGG 148 (429)
T ss_pred HHHH-Hh---CCcccccCeEEEEEChHHHH-H--HHHHHHHHhhCCCcceeecC-HHHHHhhCccccccceeeEEcCCCc
Confidence 0000 00 00123347888898865211 0 111111 000 11 0011 112222222221 111111111
Q ss_pred cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcE-EeecEEEEcccCCCCchhhccccc
Q 023975 157 LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
. -....+...+.+.+.++|+++.++++|+.++.+++ ...+.+.+|++ ++|+.||.|.|-.. .+++...+.
T Consensus 149 i--V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~ 220 (429)
T COG0579 149 I--VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI 220 (429)
T ss_pred e--EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence 1 11234778888999999999999999999999888 56677888876 99999999999664 555555444
No 105
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.26 E-value=8.9e-11 Score=92.17 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeecc---CCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSV---SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.....++..+++.|+.++.+..+..++- .+..+.|++.+|..+.++.+|+++|.+-+ .+++
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 3456778888999999999999887762 34467889999999999999999998763 4444
No 106
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.24 E-value=1e-10 Score=98.70 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+.+. +++++.++++++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 666777777665 49999999999998877778888889989999999999997543
No 107
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.23 E-value=2.5e-10 Score=89.95 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..+||+||||||+|++||+.|+ +|++|+|+||...+|
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G 61 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG 61 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4589999999999999999997 599999999988776
No 108
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.23 E-value=8.3e-11 Score=99.73 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC-----cEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~ 219 (274)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ .++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4667778888999999999999999987666665543332 3799999999999764
No 109
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.22 E-value=5.3e-10 Score=94.67 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+++.|++++.++++.+++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 355677777888899999999999998888788888889989999999999997543
No 110
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.22 E-value=1e-10 Score=98.92 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+.+.|++++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 467788888888899999999999998877788888888989999999999997653
No 111
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.21 E-value=4.8e-11 Score=102.16 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHh----CC--cEEEcCceeeeeccC-CCceeEECCCCcEEeecEEEEcccCCCCchhhccccc
Q 023975 164 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 164 ~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
.+...+.+.+++ .| +++.++++|++++.+ ++.+.|.+.+| ++.||.||+|+|... .+++...++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi 282 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence 577888888888 77 889999999999877 44566777777 699999999999765 455554443
No 112
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.21 E-value=1.8e-10 Score=96.97 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=53.1
Q ss_pred CCCeEEEEeCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 144 PEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 144 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
.+..+..... ...+| .....+.+.+.+.+++.|+++++++.|++++.+++.+.+.+ +++++.+|.||+|+|..
T Consensus 85 ~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 85 LGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred cCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 4555554332 22333 23356788888889999999999999999977666666666 45679999999999964
No 113
>PLN02463 lycopene beta cyclase
Probab=99.20 E-value=8.5e-10 Score=93.60 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+.|+++. ..+|++++.+++...|.+++|+++.||.||.|+|...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 366777787888899996 5689999887777888899998999999999999754
No 114
>PRK07190 hypothetical protein; Provisional
Probab=99.20 E-value=2.1e-10 Score=98.78 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+...+.+.+++.|+++..+++|++++.+++.+.+.+.+|+++.|+.||.|.|...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4556667788889999999999999988877777778888999999999999754
No 115
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.20 E-value=3.3e-10 Score=95.03 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+.+.|++++.+++|++++.+++.+.+.+++| ++.+|.||+|+|...
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 34666677778889999999999999988777777888877 799999999999764
No 116
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.19 E-value=2.6e-10 Score=97.65 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CC---ceeEECC-CCc-----EEeecEEEEcccCCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EG---SDTYLTS-TGD-----TINADCHFLCTGKPVG 220 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~---~~~v~~~-~g~-----~~~~d~vv~a~G~~~~ 220 (274)
..+...+.+.++++||+++++++|+++..+ ++ ...+... +|+ ....|.||+++|....
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 568889999999999999999999999864 32 1223332 232 3578999999996443
No 117
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.19 E-value=2e-10 Score=96.75 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+.+ +. +.+++|.+++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 5667777777764 55 789999999887888888888898999999999999754
No 118
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.19 E-value=7.7e-10 Score=93.19 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+++.| +++. ++.+++++.+++.+.+++.+|+++.+|.||.|.|...
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 46677778888777 9998 8899999877777888888888899999999999754
No 119
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.19 E-value=2.4e-10 Score=97.18 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.+...+.+.+++.|++++++++|++++.+++.+ .++++++ ++.+|.||+|+|... ..++.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~-~~l~~ 262 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS-TALLK 262 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch-HHHHH
Confidence 567778888889999999999999998766654 3555544 799999999999765 34443
No 120
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.18 E-value=3.8e-10 Score=95.33 Aligned_cols=59 Identities=7% Similarity=-0.164 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCCC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
...+.+.+.+.++..|.+++++++|++|+.++++ ..|++.+|+++.|+.||....+.|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3467888888889999999999999999766433 5688889999999999999888775
No 121
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.18 E-value=4.6e-10 Score=90.84 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC-CcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+ +.++.+|.||.|+|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 366778888888999999999999988777766665443 45899999999999753
No 122
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.17 E-value=6.1e-09 Score=86.60 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCC--cEEeecEEEEcccCCCCchhhcc--------ccccc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKD--------TILKD 231 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~--------~~~~~ 231 (274)
..+.+.+.+.+++.|++++.+++|.++..+++.+. +.+.++ ..+.+|.+|+|+|..-...++.. .++++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v 342 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDV 342 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCc
Confidence 35677888999999999999999999987777555 454555 48999999999998722333221 12222
Q ss_pred ccCC-----------------CCcEEeCCCccc----cCCCCeEEeccccCCCCC
Q 023975 232 SLDT-----------------HGMLMVDENLRV----KGQKNIFAIGDITDIRVS 265 (274)
Q Consensus 232 ~~~~-----------------~g~~~v~~~~~~----~~~~~i~~~Gd~~~~~~~ 265 (274)
...+ .-++.+|++++. ...+|+|++|-+.+..++
T Consensus 343 ~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~ 397 (419)
T TIGR03378 343 LQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDP 397 (419)
T ss_pred CCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCCh
Confidence 1111 123778988884 137999999999876554
No 123
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.17 E-value=7.5e-10 Score=93.83 Aligned_cols=55 Identities=15% Similarity=-0.108 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+...+.+.+++.|+++..+++|++++.. ++. ..+.+++| ++.++.||+|+|...
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 45566778889999999999999999643 344 34677777 699999999887543
No 124
>PRK07233 hypothetical protein; Provisional
Probab=99.16 E-value=2.7e-10 Score=97.36 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
..+.+.+.+.+++.|+++.++++|++|+.+++.+.+...+++.+.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 45778888889889999999999999987777665555677789999999999853
No 125
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.16 E-value=4.7e-10 Score=94.54 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+++. |++++.++++++++.+++.+.+.+++|+++.+|.||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 556777777766 99999999999998777777888888889999999999997653
No 126
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.16 E-value=3.1e-10 Score=94.75 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+.+. |++++.+++|.+++.. .|++++|+ +.||.||+|+|...
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCCh
Confidence 34667777777665 9999999999999642 57777774 78999999999764
No 127
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=91.34 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=45.0
Q ss_pred HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975 168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.+++....-+.++.+++.|..+..-.+++.++-.+|++..+|.+|+||-......++.
T Consensus 222 yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~ 279 (447)
T COG2907 222 YVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLD 279 (447)
T ss_pred HHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcC
Confidence 3344334445679999999999998999999999999999999999998655444444
No 128
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.15 E-value=2.9e-10 Score=97.93 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
..+.+.+.+.+++.|++|.++++|++|..+++ ..+++..+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 45889999999999999999999999998876 46788888878999999999887
No 129
>PRK08013 oxidoreductase; Provisional
Probab=99.15 E-value=5.7e-10 Score=94.25 Aligned_cols=55 Identities=7% Similarity=-0.044 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+|+++.+|.||-|.|...
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 666777777764 8999999999999877778888888999999999999999754
No 130
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.15 E-value=7.3e-10 Score=93.11 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECC-CCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.++++ +|+++.||.||-|-|...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 37778888887765 999999999999998888878877 999999999999999654
No 131
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.14 E-value=3.9e-10 Score=94.29 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcc
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD 226 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~ 226 (274)
+.+.+.+.+. .+++++++|+++..+....++++.+|+++.+|.||++....-...++..
T Consensus 217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~ 275 (444)
T COG1232 217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD 275 (444)
T ss_pred HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC
Confidence 4444555554 4499999999999887788999999999999999999875443444444
No 132
>PRK09126 hypothetical protein; Provisional
Probab=99.14 E-value=3.6e-10 Score=95.30 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHH-HhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+ +..|++++.++++++++.+++.+.+.+++|+++.+|.||.|.|....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 444455554 44699999999999998777777888888999999999999997654
No 133
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.14 E-value=1.2e-10 Score=101.65 Aligned_cols=62 Identities=10% Similarity=-0.154 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCC--cEEeecEEEEcccCCCCchhhc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
..+...+.+.+.++|+++..+++|+++..+++.+ .+++ .++ .++.|+.||+|+|.+. ..+..
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~ 216 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAE 216 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHH
Confidence 3466677777888999999999999998766543 3443 223 3799999999999765 33433
No 134
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.13 E-value=1.6e-09 Score=91.10 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+.| ++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 46777888888877 999999999999887778888888998999999999999754
No 135
>PRK05868 hypothetical protein; Validated
Probab=99.12 E-value=5.1e-10 Score=93.50 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=40.6
Q ss_pred hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 175 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 175 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
..|++++.++++++++.+++.+.+.+++|+++.+|.||-|-|....
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 4689999999999998777788899999999999999999997554
No 136
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=3.2e-09 Score=90.23 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCC-C--cEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+ + .++.||.||.|.|....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 556677766664 79999999999998777777777653 2 36999999999997553
No 137
>PRK07588 hypothetical protein; Provisional
Probab=99.11 E-value=4.7e-10 Score=94.53 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+. .+++++.+++|++++.+++.+.+.+++|+++.+|.||-|.|....
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 4455555443 479999999999998888888889999999999999999997543
No 138
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.11 E-value=9.2e-10 Score=94.56 Aligned_cols=54 Identities=13% Similarity=-0.018 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.|++++.+++|++++. ++.+.|.+++| ++.||.||+|+|..
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 35778888999999999999999999974 44566777777 69999999999954
No 139
>PRK06834 hypothetical protein; Provisional
Probab=99.11 E-value=2.2e-09 Score=92.61 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
.+.+.+.+.+++.|++++.++++++++.+++.+.+++.+|+++.+|.||.|.|.....
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 4666777888888999999999999998888888888888899999999999986643
No 140
>PRK06184 hypothetical protein; Provisional
Probab=99.11 E-value=7.8e-10 Score=96.14 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+.|+++..++++++++.+++.+.+.+ .+++++.||.||.|.|...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 556777888888999999999999988877777666 5667899999999999754
No 141
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.08 E-value=1.5e-09 Score=91.29 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 367788888877 49999999999999877777888888888999999999999754
No 142
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.08 E-value=3.6e-09 Score=84.57 Aligned_cols=95 Identities=23% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCcEEEEcCChHHHHHHHHh-h--cCCcEEEEcCCCCceeeccceeeecCCcccccee--eeccccccccEEEEEeeEEE
Q 023975 13 NKRVVVIGGGVAGSLVAKSL-Q--FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV--INHTDYLVNGRIVASPAINI 87 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L-~--~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 87 (274)
..+|.|||+||||+.+|.+| + .+++|.|+|+.+.+. +..++-+.+...+-.. ..+.+..+..++.---.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 46999999999999999887 4 379999999998765 4445444444322210 01111111111110011111
Q ss_pred ecCeEEeCCCeEEecCEEEEccCCC
Q 023975 88 TENEVLTAEGRRVVYDYLVIATGHK 112 (274)
Q Consensus 88 ~~~~v~~~~~~~~~~~~li~a~G~~ 112 (274)
.. .+.+.+ .+-.||.+++|.|+.
T Consensus 97 G~-dvsl~e-L~~~ydavvLaYGa~ 119 (468)
T KOG1800|consen 97 GR-DVSLKE-LTDNYDAVVLAYGAD 119 (468)
T ss_pred cc-cccHHH-HhhcccEEEEEecCC
Confidence 11 122211 245799999999987
No 143
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.08 E-value=3.6e-10 Score=93.85 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC---CCc--EEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+++.|+++..++++..++.+.+...+.+. +|+ +++||.||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 36678888888889999999999999877776554432 332 7899999999997654
No 144
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.08 E-value=7.9e-10 Score=95.88 Aligned_cols=57 Identities=12% Similarity=-0.074 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC----cEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~ 219 (274)
..+...+...+++.|+++..+++|++++.+++.+.+.+.++ .++.++.||.|+|.+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 44666677778889999999999999987776666665554 2689999999999765
No 145
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.08 E-value=8.7e-10 Score=94.79 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCC-cEEEcCceeeeeccCCCc-eeEEC---CCCc--EEeecEEEEcccCCCCchhhccccc
Q 023975 163 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 163 ~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
..+...+.+.+++.| +++.++++|++++.+++. +.+.+ .+|+ ++.|+.||+|+|... ..++...+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi 255 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 357788888888876 899999999999875443 55543 3453 699999999999875 555555443
No 146
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.07 E-value=6e-09 Score=90.45 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eE--ECCCC--cEEeecEEEEccc-CCCCchhhcc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY--LTSTG--DTINADCHFLCTG-KPVGSDWLKD 226 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v--~~~~g--~~~~~d~vv~a~G-~~~~~~~~~~ 226 (274)
..+...+.+.+++.|++++++++++++..+++.+ .+ ...++ .++.++.||+|+| +..+.+++..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 3467788888899999999999999998665533 23 33443 3689999999998 6666555543
No 147
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.07 E-value=4.9e-09 Score=90.99 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC---Cc--EEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+++.|+++..+++|+++..+++.+.+.+.+ |+ ++.++.||+|+|.+.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 3455666777888999999999999998776666665543 43 789999999999865
No 148
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.06 E-value=4e-10 Score=97.07 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
.+.+.+.+.++. ++|.++++|+.|+.+++.+.|.+.+|+++.||.||+|+..
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 345555555543 6899999999999888888888888888999999999863
No 149
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.06 E-value=7.3e-09 Score=89.31 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--CCC--cEEeecEEEEcccC-CCCchhh
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STG--DTINADCHFLCTGK-PVGSDWL 224 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~~~~~d~vv~a~G~-~~~~~~~ 224 (274)
..+...+.+.+++.|++++++++++++..+++.+ .+.. .++ ..+.++.||+|+|- ..+.+++
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 4577788888899999999999999998765543 3433 233 36899999999984 4444433
No 150
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.06 E-value=1e-09 Score=93.81 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHh-CCcEEEcCceeeeeccC-CCceeEE---CCCCc--EEeecEEEEcccCCCCchhhccccc
Q 023975 163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
..+.+.+.+.+.+ .|++++++++|+.++.+ ++.+.+. +.+++ ++.||.||+|+|... ..++...+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi 256 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI 256 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 3567778787754 59999999999999866 5556554 44453 689999999999876 566655544
No 151
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.06 E-value=2.5e-09 Score=91.90 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=35.0
Q ss_pred EEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 179 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
+|+++++|++|+.+++.+.|.+++|+++.||.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 899999999999887777888888989999999999874
No 152
>PRK06753 hypothetical protein; Provisional
Probab=99.05 E-value=5.1e-09 Score=87.73 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+. +.+++.++++++++.+++.+.+++++|+++.+|.||-|.|....
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4444444443 46889999999998888888899999999999999999996543
No 153
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.05 E-value=2.6e-10 Score=102.13 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+++ |+++..+++|++++.+++.+.|.+++|..+.+|.||+|+|...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3577888888888 9999999999999877777778888887789999999999764
No 154
>PRK08244 hypothetical protein; Provisional
Probab=99.05 E-value=1.5e-09 Score=94.19 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC--CC-cEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS--TG-DTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+++.|++++.++++++++.+++.+.+.+. +| +++.+|.||.|.|....
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 5567777788889999999999999877777666543 45 47999999999997653
No 155
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.05 E-value=8.7e-10 Score=92.80 Aligned_cols=56 Identities=18% Similarity=-0.031 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+++.| ..+..++.+..++.+.+...|.+.+|+ +.+|.||+|+|...
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 467788888899999 566668889888764245678888886 99999999999764
No 156
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=2.2e-09 Score=92.28 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEEC---CCC--cEEeecEEEEcccCCCCchhhccccc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
..+...+.+.+++.|++++++++|++++.+++ .+.+.+ .+| .++.+|.||+|+|... ..+....+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi 249 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence 46788888889999999999999999987543 444542 334 2689999999999775 555554443
No 157
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.03 E-value=3.6e-09 Score=88.91 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
+...+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.+|.||.|.|.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 44455555544 4799999999999988888888999999999999999999986543
No 158
>PRK07236 hypothetical protein; Provisional
Probab=99.03 E-value=6.9e-09 Score=87.31 Aligned_cols=44 Identities=18% Similarity=0.005 Sum_probs=38.7
Q ss_pred CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 177 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 177 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+++++.++++++++.+++.+.+.+++|+++.+|.||.|-|....
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 57899999999999888888899999999999999999996543
No 159
>PRK06185 hypothetical protein; Provisional
Probab=99.03 E-value=7.4e-09 Score=87.79 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=41.9
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCce---eEECCCCc-EEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+ .|+++..++++.+++.+++.+ .+...+|+ ++.+|.||.|.|...
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 55667776665 489999999999998766644 34455664 799999999999764
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.03 E-value=2e-09 Score=69.10 Aligned_cols=77 Identities=26% Similarity=0.317 Sum_probs=69.4
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG 203 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g 203 (274)
.+++|.+|+|+|..+. ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.+.+++.+++.+.|+++||
T Consensus 4 ViGgG~ig~E~A~~l~--~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 4 VIGGGFIGIELAEALA--ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EESSSHHHHHHHHHHH--HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred EECcCHHHHHHHHHHH--HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 3577899999999998 5789999999999999999999999999999999999999999999998877766877775
No 161
>PRK09897 hypothetical protein; Provisional
Probab=99.02 E-value=7.6e-09 Score=89.32 Aligned_cols=52 Identities=17% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHhCC--cEEEcCceeeeeccCCCceeEECCC-CcEEeecEEEEcccCCC
Q 023975 168 KTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 219 (274)
Q Consensus 168 ~~~~~~~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.| +.++.+++|++++.+++.+.+.+.+ |..+.+|.||+|+|..+
T Consensus 112 ~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 112 RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence 3444555666 7888899999998887778887755 46899999999999743
No 162
>PRK07045 putative monooxygenase; Reviewed
Probab=99.02 E-value=3.7e-09 Score=89.03 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=44.7
Q ss_pred HHHHHHHHHH-hCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLI-SKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+. ..|++++.+++++.++.+++. +.+++++|+++.+|.||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 5566777665 468999999999999876554 3678888999999999999997543
No 163
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.02 E-value=1.2e-09 Score=94.73 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCC-----cEEeecEEEEcccCC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKP 218 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~ 218 (274)
...+.+.+.+.+++.|++|+++++|++|..+++. ..+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 3458888999999999999999999999877664 34444443 578999999998864
No 164
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.02 E-value=1.9e-09 Score=93.79 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
..+.+.+.+.+++.|++|+.+++|++|..+++. +.|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 357788888889999999999999999876654 56888888889999999998853
No 165
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.01 E-value=6.6e-09 Score=85.45 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=43.1
Q ss_pred HHHHHHHHHH-hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc
Q 023975 165 AGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 216 (274)
Q Consensus 165 ~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G 216 (274)
-.+.+.+++. +.+-.|.++.+|.+|..+++++.|++.+.++..+|.+|+++.
T Consensus 207 Gmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 207 GMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred cHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 3455555554 457889999999999999999999999866899999999987
No 166
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=2.3e-09 Score=89.74 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+.+.+ ++++.++++++++.+++.+.+.++++ ++.+|.||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 46777888777764 99999999999988877888888776 8999999999997543
No 167
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.00 E-value=4.5e-09 Score=89.94 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-e--EECCCCc--EEeecEEEEccc-CCCCchhhc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-T--YLTSTGD--TINADCHFLCTG-KPVGSDWLK 225 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~--v~~~~g~--~~~~d~vv~a~G-~~~~~~~~~ 225 (274)
..+...+.+.+++.|++++.+++++++..++ +.+ . +...+++ .+.++.||+|+| +..|.+++.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 4577888888999999999999999998653 322 2 3334453 478999999999 455444443
No 168
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.00 E-value=4.1e-10 Score=95.50 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=42.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE 59 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~ 59 (274)
..+||+|||||+.|+.+|+.++ +|++|+|+|+++.-.++.+....++.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiH 59 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIH 59 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCcc
Confidence 5689999999999999999998 79999999999988877776665554
No 169
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.00 E-value=4.7e-09 Score=88.62 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+ .|++++.++++++++.+++.+.+++++|.++.+|.||.|.|...
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 44566666655 58999999999999877777888888888899999999999764
No 170
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.00 E-value=4.5e-09 Score=87.85 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+. .+..+..+..|.+|+..++...+++++|+++.|+.||-|.|..+
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 36667777777 44566778999999988887888999999999999999999654
No 171
>PRK06996 hypothetical protein; Provisional
Probab=99.00 E-value=5.9e-09 Score=88.06 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC---cEEeecEEEEcccC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK 217 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~ 217 (274)
.+.+.+.+.+++.|+++..++++++++.+++.+.+.+.++ +++.||.||-|.|.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 3677888888888999999999999988888888887754 58999999999995
No 172
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.00 E-value=1.4e-08 Score=89.07 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECC--CC--cEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~ 220 (274)
.+.+.+.+.+.+ .|++++.++++++++.+++.+.+++. +| +++.+|.||-|.|....
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 355566666666 49999999999999988887777765 56 47999999999997544
No 173
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.00 E-value=5.5e-09 Score=87.91 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC------C--cEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+.|++++.. .++++..+++.+.+.+.+ | .++.+|.||.|.|...
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 5667778788889999765 588887777776666542 2 3799999999999643
No 174
>PLN02697 lycopene epsilon cyclase
Probab=99.00 E-value=7.1e-09 Score=89.50 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+.|+++ .+++|+.++.+++... +.+.+|.++.|+.||.|+|...
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 36677778888889998 6678999887666554 4567788999999999999865
No 175
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.98 E-value=2.2e-09 Score=91.48 Aligned_cols=38 Identities=39% Similarity=0.540 Sum_probs=33.6
Q ss_pred CCCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
++.+++||+||||||||+++|+.|++ |++|+|+||...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 45567999999999999999999984 999999999753
No 176
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.97 E-value=9.9e-09 Score=86.46 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+.|+++. ..++..++.+ ++...+.+++|+++.|+.||.|+|..+
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 466777787888899886 5578888766 455677888888999999999999765
No 177
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.97 E-value=4.4e-09 Score=88.91 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.+.+.+.+ .+++++.++++++++.+++.+.+++ .+++++.+|.||-|-|...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 366777777765 4899999999999987777776665 3446799999999999654
No 178
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.97 E-value=1.9e-09 Score=93.46 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+.+.+.+.+++.|++|+.+++|++|..+++ ...|++.+|+++.+|.||+++|...
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 45788889999999999999999999987655 4567888898999999999998643
No 179
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.97 E-value=2e-08 Score=85.11 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+...+.+.+.+ .|+++..++++++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 44566666655 47999999999999877778888899999999999999999754
No 180
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=2.7e-08 Score=82.57 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~g 48 (274)
+++|+|||+|++|++.|.+|. + ...+.|+|+.+.+|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 379999999999999999984 2 23399999999876
No 181
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.96 E-value=6e-09 Score=89.84 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.8
Q ss_pred cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
.+|+++++|+.|+.+++.+.|++++|+++.||.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 7899999999999888788888888888999999999885
No 182
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.96 E-value=6.8e-09 Score=88.31 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~ 49 (274)
..+||+|||+|.|||+||..++.|.+|+|+||.+..++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence 45899999999999999999878999999999887654
No 183
>PRK11445 putative oxidoreductase; Provisional
Probab=98.94 E-value=1.8e-08 Score=83.60 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC-CCCc--EEeecEEEEcccCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKP 218 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~ 218 (274)
+.+.+.+. .+.|+++..++.++.++.+++.+.+.+ ++|+ ++.||.||.|+|..
T Consensus 101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 101 FDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred HHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 44455553 457899999999999987777777764 5664 68999999999974
No 184
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.93 E-value=1.7e-08 Score=85.17 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeecc-CCCceeEEC-CCCc--EEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+.+.|++++.++++++++. +++...|++ .+|+ ++.+|.||-|-|....
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 455666666778999999999998876 555566666 4664 6899999999996543
No 185
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.92 E-value=1.4e-09 Score=67.12 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=31.7
Q ss_pred EEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccce
Q 023975 18 VIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (274)
Q Consensus 18 IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~ 54 (274)
|||||++||++|+.|++ |++|+|+|+++.+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999984 99999999999998665443
No 186
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.92 E-value=6.9e-08 Score=84.48 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=33.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..+||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 4689999999999999999997 499999999988765
No 187
>PLN02661 Putative thiazole synthesis
Probab=98.92 E-value=2.7e-08 Score=80.65 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE 48 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g 48 (274)
..+||+|||||++|++||++|+ . |++|+|+||...+|
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 3589999999999999999997 3 89999999987775
No 188
>PRK06126 hypothetical protein; Provisional
Probab=98.91 E-value=5.2e-08 Score=85.72 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEEC---CCCc--EEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~ 219 (274)
+...+.+.+++ .|++++.++++++++.+++.+.+.+ .+|+ ++.+|.||.|.|...
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 55566666665 5899999999999988777666554 3353 689999999999754
No 189
>PLN02612 phytoene desaturase
Probab=98.91 E-value=3.3e-08 Score=86.88 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
..+.+.+.+.+++.|++|+++++|++|+.++++ ..+++.+|+++.+|.||+|++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 347788888888899999999999999875444 3477778889999999999864
No 190
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.90 E-value=8.2e-09 Score=87.79 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCCc--EEeecEEEEcccCCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGKPVG 220 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~~ 220 (274)
..+...+.+.+++.|++++.++.++++..+++.+ .+.. .+|+ ++.|+.||+|||-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4567888889999999999999999998876644 3332 4555 6889999999996543
No 191
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.89 E-value=3.3e-08 Score=86.94 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEEC--CCCc-EEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT--STGD-TINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~~~~d~vv~a~G~~~~ 220 (274)
+...+.+.+.+. +++++.++++++++.+++.+.+.+ .+++ ++.+|.||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 455666666664 799999999999988777665543 4554 6999999999997654
No 192
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.88 E-value=3.1e-08 Score=84.67 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhC---CcEEEcCceeeeecc-------CCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 165 AGDKTRDWLISK---KVDVKLGERVNLDSV-------SEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 165 ~~~~~~~~~~~~---gv~i~~~~~v~~i~~-------~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+.+.+.+.+++. +++++.++++.+++. +++.+.+.+.+|+++.||.||-|-|....
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 556677777665 499999999999964 24567888899999999999999997543
No 193
>PRK07121 hypothetical protein; Validated
Probab=98.87 E-value=1.7e-08 Score=87.55 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cc-eeEECC-CCc--EEee-cEEEEcccC-CCCchhhc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYLTS-TGD--TINA-DCHFLCTGK-PVGSDWLK 225 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~-~g~--~~~~-d~vv~a~G~-~~~~~~~~ 225 (274)
..+...+.+.+++.|++++.+++++++..++ +. ..|... +++ .+.+ +.||+|+|- ..|.+++.
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 3567778888889999999999999997653 33 334332 332 5788 999999994 44444443
No 194
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=6.8e-08 Score=82.12 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+. +..++.+++|++++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 4444444442 4567889999999887778889899999999999999999654
No 195
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.87 E-value=4.3e-09 Score=93.25 Aligned_cols=58 Identities=12% Similarity=-0.118 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEEC---CCCc--EEeecEEEEcccCCC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLT---STGD--TINADCHFLCTGKPV 219 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~ 219 (274)
+..+...+.+.+++.|+++..+++|.++..+ ++.+ .|.. .+++ ++.+|.||+|+|.+.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 3467778888899999999999999998765 2433 3332 2333 689999999999764
No 196
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.87 E-value=2.1e-08 Score=88.43 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
..++||+|||+|++|++||+.++ +|++|+|+||....|+..
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 34689999999999999999997 599999999999877543
No 197
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.86 E-value=2.5e-08 Score=76.41 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCcEEEcCceeeeeccCCCceeEECCCCc-EEeecEEEEcccCCCCchhh
Q 023975 176 KKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWL 224 (274)
Q Consensus 176 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~~ 224 (274)
-..+|+.+++|+++...++..++.+++|. ...+|.||++........++
T Consensus 116 tdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL 165 (331)
T COG3380 116 TDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL 165 (331)
T ss_pred ccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence 46778889999999988888999997764 67899999998754444555
No 198
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.86 E-value=1.4e-09 Score=92.43 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC---CcEEeecEEEEcccC
Q 023975 166 GDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST---GDTINADCHFLCTGK 217 (274)
Q Consensus 166 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g~~~~~d~vv~a~G~ 217 (274)
...+.+.+++.|+++++++.+.++..+++.+ .|.+.+ ..++.|+.+|-|||-
T Consensus 93 ~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 93 KAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455566677899999999999999887544 354443 358999999999993
No 199
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.84 E-value=6.7e-08 Score=83.13 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-e-eEECCCCc-----EEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTSTGD-----TINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~-----~~~~d~vv~a~G~ 217 (274)
..+.+.+.+.+++.|++|+++++|++|+.++++ + .+++.+|+ ++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 346788888898899999999999999754332 3 46665554 7999999999875
No 200
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=6.5e-08 Score=85.44 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCC----Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE----GS-DTYL---TSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.||+++.++.++++..++ +. ..+. ..+|+ .+.|+.||+|||-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 4567778888888999999999999987544 33 3333 24554 57899999999954
No 201
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.83 E-value=4.4e-08 Score=84.35 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCC--Cc----eeEECCCC---cEEeecEEEEcccCCCCchhhc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.+.+.+.+.+++.|++|+++++|++|+.++ +. ..+.+.+| +++.+|.||+|++......+++
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence 356778899999999999999999998653 22 22334433 4689999999998643334443
No 202
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.83 E-value=4e-08 Score=84.52 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+.+.+.+.+++.|+++..+ .++.+..+++.+ .+.. +++.+.++.||+|||-..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 457788888888899999876 677776554443 3444 566899999999999644
No 203
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.1e-07 Score=83.36 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-e-eEE---CCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYL---TSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.||++++++.++++..+++. + .+. ..+|+ .+.|+.||+|||-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 456777888888899999999999998765443 3 332 24564 58999999999953
No 204
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.82 E-value=2.8e-09 Score=79.06 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~ 49 (274)
..||+||||||+||+||++|+ +|.+|+|+||+-.+|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence 469999999999999999998 5999999999988873
No 205
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.82 E-value=4.6e-08 Score=82.36 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeecc-CCCceeEECC-CCc--EEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G~~~ 219 (274)
+...+.+.+.+.|+.++.+..++.+.. +++...|.+. +|+ ++.+|.||-|-|...
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 455666667777999999888777644 4455666664 675 689999999999654
No 206
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.82 E-value=4.6e-08 Score=84.94 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975 165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
+...+.+.+++. |+.+. ...+.++..+++. ..|.+.+|..+.|+.||+|||..
T Consensus 102 y~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 455666777655 88885 4568887655554 45888889999999999999953
No 207
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.81 E-value=7.2e-08 Score=81.34 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=30.7
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
+||+||||||+|++||+.|+ +|++|+|+||....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999998 49999999997654
No 208
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.81 E-value=1.8e-07 Score=82.26 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=33.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--Ccee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--YFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~--~~g~ 49 (274)
..+||+|||+|.|||+||..++ .|.+|+|+||.+ ..|+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 4589999999999999999997 599999999998 5554
No 209
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=1.2e-07 Score=84.35 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..+||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 3579999999999999999997 599999999987554
No 210
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=5.7e-08 Score=85.41 Aligned_cols=55 Identities=11% Similarity=-0.151 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCCc--EEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~ 217 (274)
..+...+.+.+++.||++++++.++++..+++.+ .+.. .+++ .+.|+.||+|||-
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 3466677777777899999999999998765543 3432 2343 6789999999994
No 211
>PLN02676 polyamine oxidase
Probab=98.80 E-value=4.7e-08 Score=84.34 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=36.7
Q ss_pred cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
.+|+++++|++|..+++++.|.+.+|+++.||.||+|.+.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 6799999999999888889999999999999999999873
No 212
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.80 E-value=4.2e-09 Score=78.49 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~ 49 (274)
..+||+||||||+||+||+.|++ |++|+++|++..+|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 35899999999999999999985 999999999988873
No 213
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.3e-08 Score=85.01 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.||+++.++.+.++..+++.+ .+ ...+|+ .+.|+.||+|||-.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 4577778888888999999999999987655432 22 234554 58999999999954
No 214
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.80 E-value=1.6e-07 Score=77.20 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=57.9
Q ss_pred CccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975 155 SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
+++.....+.+.+.+.+.+++.|++++.+++|.+++..++. ..+.+++|.++++|.||+|+|... .+|+.
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~ 235 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE 235 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence 34444556678899999999999999999999999988774 568899999999999999999876 44443
No 215
>PRK07538 hypothetical protein; Provisional
Probab=98.79 E-value=4.6e-08 Score=83.07 Aligned_cols=55 Identities=13% Similarity=-0.031 Sum_probs=39.7
Q ss_pred HHHHHHHHHHh-CC-cEEEcCceeeeeccCCCceeEECCCC-----cEEeecEEEEcccCCC
Q 023975 165 AGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV 219 (274)
Q Consensus 165 ~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~ 219 (274)
+.+.+.+.+.+ .| ..++.++++++++.+++.+.+.+.++ +++.||.||-|.|...
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 55566666654 46 57999999999987666555554432 4899999999999644
No 216
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.79 E-value=1e-08 Score=84.37 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=56.2
Q ss_pred cEEEEcCChHHHHHHHHhhc-CCcEEEE-cCCCCceeec--cce---------------e--------------eecC--
Q 023975 15 RVVVIGGGVAGSLVAKSLQF-SADVTLI-DPKEYFEITW--ASL---------------R--------------AMVE-- 59 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~~-g~~v~vi-e~~~~~g~~~--~~~---------------~--------------~~~~-- 59 (274)
||+|||||+||+.||+.+++ |++|+|+ .+.+.++... ..+ . ..++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999985 9999999 4444332110 000 0 0000
Q ss_pred Ccccccee---e----------eccccccccEEEEEeeEEEec--C---eEEeCCCeEEecCEEEEccCC
Q 023975 60 PSFGKRSV---I----------NHTDYLVNGRIVASPAINITE--N---EVLTAEGRRVVYDYLVIATGH 111 (274)
Q Consensus 60 ~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~li~a~G~ 111 (274)
.....+.. . .......++.+.+..+.++.. . .|.+.+|..+.++.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000100 0 011112357777777777643 2 678889999999999999998
No 217
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.7e-07 Score=82.78 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+.+ .||+++.++.+.++..+++.+ .+ ...+|+ .+.|+.||+|||-.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3466677776665 699999999999987655533 22 234564 58999999999954
No 218
>PLN02487 zeta-carotene desaturase
Probab=98.79 E-value=7.6e-08 Score=83.96 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCC--c----eeEEC---CCCcEEeecEEEEcccCCCCchhhc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S----DTYLT---STGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
.+.+.+.+.++++|++|++++.|.+|+.+++ + ..+++ .+++.+.+|.||+|++......+++
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp 366 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP 366 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence 4788899999999999999999999987632 2 34555 3345789999999999643333443
No 219
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.78 E-value=7.2e-08 Score=84.40 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~ 49 (274)
..+||+|||+|.||++||..+++|.+|+|+||.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 45899999999999999999978999999999887654
No 220
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.78 E-value=1.8e-07 Score=82.62 Aligned_cols=56 Identities=14% Similarity=-0.047 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE---CCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.|++++.++.++++..+++.+ .+. ..+|+ .+.|+.||+|||-.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 3466777777888899999999999997665543 232 34564 68999999999953
No 221
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.77 E-value=1.8e-08 Score=78.87 Aligned_cols=197 Identities=13% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccce-eeecCC-------ccccceeeeccccccccEEE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEP-------SFGKRSVINHTDYLVNGRIV 80 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 80 (274)
..+|++|||||+.|++.|++|. ++.+|.|+|+...++-.-... +..+.. .+......+..+.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~L------- 119 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGREL------- 119 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHH-------
Confidence 4699999999999999999985 499999999998876321111 110000 0000000000000
Q ss_pred EEeeEEEecCeEEeCCCeEEec---CEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHh--hhhCCCCeE--EEEeC
Q 023975 81 ASPAINITENEVLTAEGRRVVY---DYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEI--AVDFPEKKV--TLVHK 153 (274)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~---~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l--~~~~~~~~v--~~~~~ 153 (274)
.-..-+.+.++| -++|+||+.. .+|.++..--.....+..++++.... .+..|..+- .+...
T Consensus 120 ----------lY~yc~e~~IpyKk~GKLIVAt~~~-EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sP 188 (453)
T KOG2665|consen 120 ----------LYEYCDEKKIPYKKTGKLIVATESE-EIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSP 188 (453)
T ss_pred ----------HHHHhhhcCCChhhcceEEEEeChh-hcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCC
Confidence 000012234444 4689999876 23332211112222233333321111 000111100 01111
Q ss_pred CCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-----eeEECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975 154 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228 (274)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~ 228 (274)
+..++. ...+...+.+.++..|.++.++-++..+....+. +.|.-..++++++..+|-|+|... .......+
T Consensus 189 htGIvD--~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sg 265 (453)
T KOG2665|consen 189 HTGIVD--WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSG 265 (453)
T ss_pred Ccceee--hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhC
Confidence 111111 1235566777799999999999999998765542 233333467999999999999764 33333344
Q ss_pred c
Q 023975 229 L 229 (274)
Q Consensus 229 ~ 229 (274)
+
T Consensus 266 c 266 (453)
T KOG2665|consen 266 C 266 (453)
T ss_pred C
Confidence 4
No 222
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.76 E-value=1.6e-07 Score=81.29 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCC-C--cEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST-G--DTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~-g--~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+++ .||+++.++.++++..+++.+ .+...+ + ..+.++.||+|||-..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4567778888877 699999999999997655533 343332 3 3689999999999643
No 223
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.75 E-value=4.5e-07 Score=79.75 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC-CCCc--EEeec-EEEEccc-CCCCchhhcc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT-STGD--TINAD-CHFLCTG-KPVGSDWLKD 226 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~-~~g~--~~~~d-~vv~a~G-~~~~~~~~~~ 226 (274)
..+...+.+.+++.|+++++++.++++..+++.+ .+.. .+++ .+.++ .||+|+| +..|.+++..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 4466677788888999999999999998765543 2333 2443 57885 6999777 5665554443
No 224
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.75 E-value=3.7e-07 Score=81.06 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeecc-CCCce-eEE---CCCCc--EEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSD-TYL---TSTGD--TINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~---~~~g~--~~~~d~vv~a~G~ 217 (274)
..+...+.+.+++.|++++.++.++++.. +++.+ .+. ..+|+ .+.|+.||+|||-
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 45677788888889999999999999875 34433 333 34564 6789999999983
No 225
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.3e-07 Score=84.07 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEEC---CCCc--EEeecEEEEcccC
Q 023975 167 DKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGK 217 (274)
Q Consensus 167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~ 217 (274)
+.+.+.+++.||++++++.++++..+++. ..+.. .+|+ .+.|+.||+|||-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 55666777889999999999999765553 33433 2453 6899999999995
No 226
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.72 E-value=2.2e-07 Score=80.74 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~ 49 (274)
.+||+|||+|.|||+||..+++|.+|+|+||.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence 4799999999999999999988999999999987553
No 227
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.71 E-value=6.7e-08 Score=80.06 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhC-CcEEEcCceeeeeccCCCc-eeEECC-----CCcEEeecEEEEcccCCCCchhhcccccccccCCC
Q 023975 164 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH 236 (274)
Q Consensus 164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~ 236 (274)
.+.+.+.+.+++. |+++.++++|++|+..+++ +.|... +.+++.++.|++..|-.. ..++...+++-... -
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~g-y 259 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKG-Y 259 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcc-c
Confidence 4777888888776 9999999999999988765 666542 235899999999999764 67777666522111 1
Q ss_pred CcEEeCCC-cccc-------CCCCeEEeccccCCCCCC
Q 023975 237 GMLMVDEN-LRVK-------GQKNIFAIGDITDIRVSA 266 (274)
Q Consensus 237 g~~~v~~~-~~~~-------~~~~i~~~Gd~~~~~~~~ 266 (274)
|.+.|-.. +.+. ....||-.-.+-.+|...
T Consensus 260 ggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSv 297 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSV 297 (488)
T ss_pred CCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccC
Confidence 22333322 2221 145677776655555544
No 228
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=3e-07 Score=81.39 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYL---TSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~---~~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+++.||++++++.++++..++ +. ..+. ..+|+ .+.|+.||+|||-.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4567778888888999999999999987654 32 3333 34564 68899999999943
No 229
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.71 E-value=1.2e-07 Score=77.00 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ceeEECCC---------------CcEEeecEEEEcccCCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTST---------------GDTINADCHFLCTGKPVG 220 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~---------------g~~~~~d~vv~a~G~~~~ 220 (274)
.+..++-+.+++.|++|+.+..+.++.-+++ .+.+.++| |-++.+..-|+|-|....
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 3788999999999999999988877764433 23344332 347889999999997654
No 230
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.70 E-value=5.8e-07 Score=79.72 Aligned_cols=54 Identities=9% Similarity=-0.093 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975 164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK 217 (274)
Q Consensus 164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~ 217 (274)
.+...+.+.+++.+ ++++.++.+.++..+++.+ .+ ...+++ .+.++.||+|||-
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 45566767777765 9999999999987554432 23 234554 6899999999994
No 231
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=4.6e-07 Score=80.15 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEEC---CCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLT---STGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~~~~d~vv~a~G~~ 218 (274)
..+...+.+.+.+.|++++.++.+.++..+ ++. ..+.. .+|+ .+.++.||+|||-.
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 346677777778889999999999998754 332 33432 3454 67899999999953
No 232
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.68 E-value=3.7e-07 Score=66.50 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCcEEE-cCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 176 KKVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 176 ~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
.|+++. ...+|+++...++...+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 465554 456899999888888899999999999999999995
No 233
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=6.5e-07 Score=79.03 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
...||+|||+|.+||+||+.++ .|.+|+|+||....|+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3589999999999999999987 59999999999887754
No 234
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.66 E-value=4.1e-07 Score=80.85 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEEC---CCCc--EEeecEEEEcccC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLT---STGD--TINADCHFLCTGK 217 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~~~~d~vv~a~G~ 217 (274)
...+...+.+.+.+.||+++.++.+.++..+ ++. ..+.. .+|+ .+.++.||+|||-
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 3456777888788889999999999997654 333 33332 3554 6799999999994
No 235
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=3.4e-07 Score=80.82 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEE---CCCCc--EEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~ 217 (274)
..+...+.+.+.+.|+++++++.++++..+ ++. ..+. ..+|+ .+.|+.||+|||-
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 456777777777889999999999998764 443 3333 33554 5789999999994
No 236
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64 E-value=1.3e-06 Score=76.80 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
+..+||+|||+| +|++||..++ .|.+|+|+||.+.+|+...
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 347899999999 8999999887 5999999999988886544
No 237
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=3.9e-08 Score=84.27 Aligned_cols=41 Identities=39% Similarity=0.640 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
.+.++|+|||||+|||+||+.|+ .|++|+|+|..+.+|+.-
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 34579999999999999999998 599999999999999553
No 238
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.63 E-value=2e-06 Score=76.05 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECC-CCc--EEee-cEEEEcccC-CCCchhhcc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS-TGD--TINA-DCHFLCTGK-PVGSDWLKD 226 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~-~g~--~~~~-d~vv~a~G~-~~~~~~~~~ 226 (274)
..+...+.+.+++.|+++++++.++++..+++. ..|... +++ .+.+ +.||+|+|- ..|.+++..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 346677888889999999999999998765443 334433 343 5676 689999994 444455443
No 239
>PRK08275 putative oxidoreductase; Provisional
Probab=98.62 E-value=7.6e-07 Score=78.35 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCce-eEE---CCCCc--EEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYL---TSTGD--TINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~~~~d~vv~a~G~~~ 219 (274)
..+.+.+.+.+++.|++++.++.++++..+ ++.+ .+. ..+|+ .+.++.||+|||-..
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 356778888888899999999999999765 4433 332 34564 578999999999643
No 240
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.62 E-value=6e-07 Score=78.61 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~ 49 (274)
..+||+|||+|.|||+||+.++++.+|+|+||....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCC
Confidence 45799999999999999999986689999999886553
No 241
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.62 E-value=8.4e-07 Score=78.22 Aligned_cols=55 Identities=20% Similarity=0.004 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975 163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK 217 (274)
Q Consensus 163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~ 217 (274)
..+...+.+.+.+ .+|+++.++.++++..+++.+ .+ ...+|+ .+.|+.||+|||-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 4566677776655 489999999999988765543 22 234663 6889999999994
No 242
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=7.5e-07 Score=78.77 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=32.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 369999999999999999997 599999999988755
No 243
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.61 E-value=1.9e-06 Score=76.22 Aligned_cols=56 Identities=13% Similarity=-0.066 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--CCCc-EEee-cEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STGD-TINA-DCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g~-~~~~-d~vv~a~G~~~ 219 (274)
.+...+.+.+++.|++++.+++++++..+++.+ .|.. .++. ++.+ +.||+|+|-..
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 356677888899999999999999987655533 3332 3443 5788 99999999544
No 244
>PLN02815 L-aspartate oxidase
Probab=98.60 E-value=6.1e-07 Score=79.07 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=32.1
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~ 49 (274)
.+||+|||+|.|||+||+.+++ | +|+|+||....++
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 4799999999999999999975 8 9999999887664
No 245
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.60 E-value=7.7e-07 Score=78.61 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975 164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK 217 (274)
Q Consensus 164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~ 217 (274)
.+...+.+.+.+ .+++++.++.++++..+++.+ .+ ...+|+ .+.|+.||+|||-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 455666666655 489999999999988665543 22 345663 7899999999994
No 246
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.58 E-value=4.1e-07 Score=75.92 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=31.1
Q ss_pred cEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCcee
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI 49 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~ 49 (274)
||+|||||+||+++|+.|+ . |++|+|+|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 7999999999999999996 3 999999999886553
No 247
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.58 E-value=6.3e-07 Score=80.03 Aligned_cols=52 Identities=15% Similarity=-0.009 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE---CCCCc--EEeecEEEEccc
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTG 216 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G 216 (274)
+...+.+.+.+.||+++.++.+.++..+++.+ .+. ..+|+ .+.|+.||+|||
T Consensus 160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 160 MLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 45566677788999999999999998665532 332 24564 568999999999
No 248
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.57 E-value=9.6e-07 Score=76.90 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCce-eEEC-CCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLT-STGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~-~~g~--~~~~d~vv~a~G~~ 218 (274)
..+.+.+.+.+++. ||+++.++.++++..+++.+ .+.. .+++ .+.++.||+|||-.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 35677777777764 89999999999986555433 3333 2332 58999999999953
No 249
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.57 E-value=9.2e-07 Score=73.24 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=33.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeec
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW 51 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~ 51 (274)
..+|+|||||+|||+||.+|- . ..+++|+|..+.+|+.-
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 468999999999999998885 4 67899999999998553
No 250
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.56 E-value=6.1e-08 Score=82.84 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+.|.+.+++.|++++.++ |+++..++++ ..|++.+|+++.||.+|=|+|+..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 467778888899999999886 6666554443 468888999999999999999754
No 251
>PRK07208 hypothetical protein; Provisional
Probab=98.54 E-value=9.2e-08 Score=82.87 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-e-EEC--CCCc--EEeecEEEEcccCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-YLT--STGD--TINADCHFLCTGKP 218 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-v~~--~~g~--~~~~d~vv~a~G~~ 218 (274)
..+.+.+.+.+++.|++|+++++|++|..++++. . +.. .+|+ ++.||.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 4577888888999999999999999998876643 2 222 3453 68999999998753
No 252
>PRK12839 hypothetical protein; Provisional
Probab=98.54 E-value=4.7e-06 Score=73.49 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
.++||+|||+|.+|+++|+.++ +|.+|+|+||.+.+|+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 4689999999999999999997 599999999998877543
No 253
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.54 E-value=1.4e-06 Score=77.11 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.0
Q ss_pred EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
|+|||+|.|||+||..++ .|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999997 49999999998744
No 254
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.53 E-value=5.5e-07 Score=78.27 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhC-CcEEEcCceeeeeccC-C-CceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISK-KVDVKLGERVNLDSVS-E-GSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+...+.+.+++. |+.+..+ .++++..+ + ....|.+.+|..+.|+.||+|||...
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3556677777776 7888765 56666443 3 34578888898999999999999774
No 255
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.51 E-value=2e-06 Score=73.52 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEECC-CCcEEeecEEEEccc-CCCCchhhcc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTS-TGDTINADCHFLCTG-KPVGSDWLKD 226 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~~~~d~vv~a~G-~~~~~~~~~~ 226 (274)
..+.+.+.+.+++.|++++++++++++..+ ++.+ .+... ++..+.++.||+|+| +..|.+++..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 457788888899999999999999999765 3333 34433 345899999999999 5555555543
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.7e-07 Score=78.59 Aligned_cols=39 Identities=33% Similarity=0.409 Sum_probs=35.3
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
++|+|+|||+|||+||+.|+ +|++|+|+|+++.+|+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence 48999999999999999998 6999999999999996543
No 257
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.47 E-value=3.4e-06 Score=80.21 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=34.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
...||+|||+|.||++||..++ .|.+|+|+||.+..|+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 3589999999999999999987 59999999999887754
No 258
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.46 E-value=9.9e-08 Score=74.99 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=35.3
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA 56 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~ 56 (274)
..|+|||+|.|||+++..+- +|-.|+++|+...+|+.......
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsS 53 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASS 53 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceeccc
Confidence 37999999999999998885 66669999999999876554433
No 259
>PLN02268 probable polyamine oxidase
Probab=98.45 E-value=1.9e-07 Score=79.93 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
.+.+.+. .+++++++++|++|...++.+.|++.+|+++.||.||+|+..
T Consensus 202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 202 PVINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 3444443 367899999999999888888888888988999999999864
No 260
>PLN02576 protoporphyrinogen oxidase
Probab=98.42 E-value=2.9e-07 Score=80.16 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=35.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW 51 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~ 51 (274)
.++||+|||||++||++|++|+ . |++|+|+|+++.+|+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 4579999999999999999997 5 89999999999998653
No 261
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.42 E-value=3.6e-06 Score=66.98 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g 48 (274)
+.||+|||||-.|++.|++|+ .|.+|+|+|+.+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 579999999999999999996 379999999988654
No 262
>PLN02568 polyamine oxidase
Probab=98.42 E-value=3.4e-07 Score=79.81 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
+.+.+.+.+. +-.|+++++|+.|..+++.+.|.+.+|+++.||.||+++..
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 3444444432 34689999999999888888899999989999999999863
No 263
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.39 E-value=7.3e-07 Score=73.26 Aligned_cols=67 Identities=7% Similarity=-0.082 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCCCc-hhhccccc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTIL 229 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~-~~~~~~~~ 229 (274)
..++..+.+.+++.|.+|.++..|.+|..+++ .+.|++.||+++.+..||..++.+-.. .+++.+-+
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence 45788889999999999999999999988775 467999999999998888877754333 55555444
No 264
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.39 E-value=3.5e-07 Score=75.85 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
++||+|||||++|+++|..|+ .|.+|+|+|+.+.+|+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 369999999999999999997 49999999999888863
No 265
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.37 E-value=1.1e-05 Score=71.46 Aligned_cols=55 Identities=5% Similarity=-0.063 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCC---Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSE---GS-DTYL---TSTGD--TINADCHFLCTGKP 218 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~---~~~g~--~~~~d~vv~a~G~~ 218 (274)
.....+...+++.+++++.++.++++..++ +. ..+. ..+|+ .+.|+.||+|||-.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 344455566677778999999999998653 33 2333 23554 57899999999954
No 266
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.33 E-value=6.9e-06 Score=66.65 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=74.3
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc---c--------CCcC-----ChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
.+++|..|++.|..+. ..+.+++++.+.+. + .+.+ ...+.+.+.+.+++.|++++. .+|..
T Consensus 5 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 81 (300)
T TIGR01292 5 IIGAGPAGLTAAIYAA--RANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIK 81 (300)
T ss_pred EECCCHHHHHHHHHHH--HCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEE
Confidence 3567888999999987 45788999887541 0 1222 135667778888889999998 88999
Q ss_pred eccCCCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 224 (274)
Q Consensus 189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~ 224 (274)
++.+++.+.+.+.+++++.+|.+|+|+|..|..+.+
T Consensus 82 v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 82 VDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence 987777777888888899999999999998764433
No 267
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.33 E-value=1.1e-05 Score=67.53 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCC-ce-eEEC--CCC--cEEeecEEEEccc
Q 023975 162 GPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG-SD-TYLT--STG--DTINADCHFLCTG 216 (274)
Q Consensus 162 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~-~~-~v~~--~~g--~~~~~d~vv~a~G 216 (274)
...+...+.+.+++ .+|+++.++.+.++..+++ .+ ++.. .++ ..+.++.||+|||
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence 44566777777765 6999999999999888777 44 4433 222 4789999999999
No 268
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.32 E-value=1.3e-06 Score=76.10 Aligned_cols=40 Identities=30% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
..++||+|||||.|||.||..++ +|.+|+|+||....++.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 34689999999999999999998 59999999998876633
No 269
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.29 E-value=1.5e-06 Score=73.78 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeE-EE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAI-NI 87 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 87 (274)
...+++|||||+.|+-.|..+++ |.+|+|+|+.+.+-.. . +.+......+.+ ..+.+.....+ ..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~---~--------D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG---E--------DPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc---C--------CHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 35789999999999999988875 9999999999876521 1 111111111111 12333322222 22
Q ss_pred e--cC--eEEeCCCe--EEecCEEEEccCCCCCCChhHHH
Q 023975 88 T--EN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRTE 121 (274)
Q Consensus 88 ~--~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~~~~ 121 (274)
. .. .+.++++. .+.+|.+++|+|..|+..++..+
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe 280 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLE 280 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChh
Confidence 1 11 35555655 68899999999999998864433
No 270
>PTZ00367 squalene epoxidase; Provisional
Probab=98.29 E-value=7.5e-07 Score=77.95 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
..+||+|||||++|+++|+.|++ |++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999984 99999999975
No 271
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.25 E-value=1e-06 Score=75.77 Aligned_cols=56 Identities=14% Similarity=-0.030 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...++..+++.|..|++++.|++|....+ ...|++.-| .+++..||.|+|++.
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 36788899999999999999999999986544 457888888 599999999999876
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=5.3e-07 Score=75.96 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
.+||+|||||+||+.||...++ |++++++--+-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 4899999999999999999986 99999997654
No 273
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.24 E-value=1.3e-06 Score=72.87 Aligned_cols=35 Identities=37% Similarity=0.353 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
+.||+|||||++|+.+|+.|+ +|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 469999999999999999997 59999999976554
No 274
>PLN02985 squalene monooxygenase
Probab=98.24 E-value=1.3e-06 Score=75.88 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
..++||+|||||++|+++|..|++ |++|+|+||...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 346899999999999999999985 999999999753
No 275
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=1.7e-06 Score=68.21 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=34.7
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~ 50 (274)
++|++|||||.+|+.+|..|++ |.+|+|+||.+++|+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 4799999999999999998875 9999999999999865
No 276
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.16 E-value=2.1e-06 Score=75.95 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
.+..+|+|||||++||++|..|++ |++|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345899999999999999999985 99999999975
No 277
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.13 E-value=3.1e-06 Score=75.49 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~ 46 (274)
..+||+||||||+||++|..|++ |.+|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 36899999999999999999974 899999999864
No 278
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.11 E-value=3.1e-06 Score=73.81 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~ 49 (274)
..+||+|||+| +||+||++++ .|++|+|+||.+..|+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 35899999999 9999999997 5999999999887553
No 279
>PLN02529 lysine-specific histone demethylase 1
Probab=98.09 E-value=4e-06 Score=75.17 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=35.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
..++|+|||||++||+||..|+ +|++|+|+|+.+.+|+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4589999999999999999997 59999999999998865
No 280
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.06 E-value=4.7e-06 Score=68.08 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=31.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
+.+|+|||||++|+++|..|+ +|++|+|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999997 59999999997764
No 281
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.06 E-value=4.9e-06 Score=75.06 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
...+|+|||||++||++|+.|+ +|++|+|+|+++.+|+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 4579999999999999999997 599999999999988653
No 282
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.05 E-value=3e-05 Score=59.14 Aligned_cols=91 Identities=23% Similarity=0.266 Sum_probs=60.7
Q ss_pred ccCCchhhhHHHHhhhhCCCCe-EEEEeCCCccC--------------Cc-C----------------------------
Q 023975 126 YQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRLL--------------EF-I---------------------------- 161 (274)
Q Consensus 126 ~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~~--------------~~-~---------------------------- 161 (274)
+++|.+|+-.|..|.+ .+.. +.++++.+.+. +. .
T Consensus 3 IGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 3 IGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp E--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred ECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 4668888888888874 3666 88888765430 00 0
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
...+.+.+.+.+++.+++++.+++|++++.+++.+.|.+.+++++.||.||+|||..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 012334556677788999999999999999988899999999889999999999963
No 283
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.04 E-value=2.5e-05 Score=60.90 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=38.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-C------CcEEEEcCCCCceeeccceeeecC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-S------ADVTLIDPKEYFEITWASLRAMVE 59 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g------~~v~vie~~~~~g~~~~~~~~~~~ 59 (274)
..++|+|+|||+.|.++|++|.+ + +.+++||+....++..+....++.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa 63 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA 63 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH
Confidence 34899999999999999999962 3 789999999887766665555443
No 284
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.03 E-value=1.3e-05 Score=68.73 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEE-EeeEEEecC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (274)
..+++|||||+.|+-+|..|+ .|.+|+++++.+.+.... .+........... ..++++.. .....++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~-------d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~ 218 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM-------DADMNQPILDELD--KREIPYRLNEEIDAINGN 218 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-------CHHHHHHHHHHHH--hcCCEEEECCeEEEEeCC
Confidence 368999999999999999997 499999999987654211 1100000000000 01344432 223334444
Q ss_pred eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 91 EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 91 ~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.+.++++..+.+|.+++|+|..|..+.
T Consensus 219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~ 245 (438)
T PRK13512 219 EVTFKSGKVEHYDMIIEGVGTHPNSKF 245 (438)
T ss_pred EEEECCCCEEEeCEEEECcCCCcChHH
Confidence 566677778999999999999987654
No 285
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.01 E-value=1.2e-06 Score=73.53 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM 57 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~ 57 (274)
..||+|||||.+|..||.-.+ +|.++.++|+++...++......+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKL 112 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKL 112 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhh
Confidence 489999999999999998887 899999999999877666544443
No 286
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.01 E-value=9.3e-06 Score=51.91 Aligned_cols=34 Identities=44% Similarity=0.695 Sum_probs=31.1
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
+|+|||||+.|+-+|..|+ .|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 5899999999999999997 599999999998765
No 287
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.00 E-value=7.2e-06 Score=72.20 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=34.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~ 50 (274)
..+||+|||+|.+|+++|+.++ .|.+|+||||....|+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3589999999999999999997 49999999999877654
No 288
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.00 E-value=1.5e-05 Score=68.34 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+|+|||||++|+.+|..|+ .|.+|+++++.+.+..... +........... ..++++... .+..+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~~~~~~l~--~~GI~i~~~~~V~~i~~~ 227 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE-------PSVAALAKQYME--EDGITFLLNAHTTEVKND 227 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC-------HHHHHHHHHHHH--HcCCEEEcCCEEEEEEec
Confidence 468999999999999999987 5999999999876531110 000000000000 013333321 222222
Q ss_pred cC-eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN-EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~-~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+...++.++.+|.+++|+|..|....
T Consensus 228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 228 GDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred CCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 11 222335678999999999999987654
No 289
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.00 E-value=5.9e-06 Score=66.99 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCcEEEcCceeeeecc--CCCc-eeE--ECCCCc----EEeecEEEEcccCCCCchhhccccc
Q 023975 166 GDKTRDWLISKKVDVKLGERVNLDSV--SEGS-DTY--LTSTGD----TINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 166 ~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~-~~v--~~~~g~----~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
...+...++..|++|++++.|++|.. +++. ..| ...++. .+.++.||+|.|....+.+|...++
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 34455666556999999999999944 3332 233 333443 5678999999997665666666555
No 290
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.99 E-value=7.1e-06 Score=68.92 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=31.1
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
.+|+|||||++|+.+|+.|+ +|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 48999999999999999997 499999999877643
No 291
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.99 E-value=2e-05 Score=66.15 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=58.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (274)
.++++|||||+.|+.+|..|. .|.+|+++++.+.+.... ..+...........+ .++++... ....+..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 212 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL------MPPEVSSRLQHRLTE--MGVHLLLKSQLQGLEKT 212 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh------CCHHHHHHHHHHHHh--CCCEEEECCeEEEEEcc
Confidence 468999999999999999997 599999999987653110 000000000000000 13333321 2222221
Q ss_pred -C--eEEeCCCeEEecCEEEEccCCCCCC
Q 023975 90 -N--EVLTAEGRRVVYDYLVIATGHKDPV 115 (274)
Q Consensus 90 -~--~v~~~~~~~~~~~~li~a~G~~~~~ 115 (274)
. .+.+.++.++.+|.+++|+|..|..
T Consensus 213 ~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 213 DSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 1 4566788899999999999998764
No 292
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.98 E-value=1.7e-05 Score=68.09 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=57.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEE-eeEEEe-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 88 (274)
..+++|||||+.|+-.|..|+ .|.+|+++++.+.+..... .+...+...+. ..++++... ....+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~----------~~gI~i~~~~~v~~i~~ 235 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE----------KEGINVHKLSKPVKVEK 235 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHH----------HcCCEEEcCCEEEEEEE
Confidence 368999999999999999997 5999999999876431110 00000000000 012333211 111111
Q ss_pred --c--CeEEeCCC-eEEecCEEEEccCCCCCCCh
Q 023975 89 --E--NEVLTAEG-RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 --~--~~v~~~~~-~~~~~~~li~a~G~~~~~~~ 117 (274)
. ..+.++++ ..+.+|.+++++|..|....
T Consensus 236 ~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 236 TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred eCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 1 13445566 57899999999999988654
No 293
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.96 E-value=8.2e-06 Score=70.83 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=35.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
+||+|||+||+|+++|+.|+ +|++|++||++...++.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 69999999999999999997 5999999999998886654
No 294
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.94 E-value=1.1e-05 Score=66.06 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=33.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITW 51 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~ 51 (274)
+.++|+|+|||++|||+|++|++ ...++|+|+.+.+|+..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 45799999999999999999973 45577799999998543
No 295
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=2.1e-05 Score=68.12 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=56.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (274)
..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+.... ....... .....+ ..+++++... +..+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-------~~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~ 250 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-------DAELSKE-VARLLK-KLGVRVVTGAKVLGLTLK 250 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-------CHHHHHH-HHHHHH-hcCCEEEeCcEEEEEEEe
Confidence 369999999999999999997 499999999987643110 0000000 000000 0133433221 22222
Q ss_pred -cC---eEEeCCC--eEEecCEEEEccCCCCCCCh
Q 023975 89 -EN---EVLTAEG--RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 -~~---~v~~~~~--~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+...++ .++.+|.+++|+|..|..+.
T Consensus 251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 11 1223345 46899999999999987754
No 296
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.94 E-value=1.9e-05 Score=68.26 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=57.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||||++|+.+|..|+ .|.+|+++|+.+.+... + .............+ .++++... .+..+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~----~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG---E----DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC---C----CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 368999999999999999997 49999999998765311 0 00000000000000 13333322 122221
Q ss_pred cC--eEEeCCC--eEEecCEEEEccCCCCCCC
Q 023975 89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVP 116 (274)
Q Consensus 89 ~~--~v~~~~~--~~~~~~~li~a~G~~~~~~ 116 (274)
.. .+.+.++ .++.+|.+++|+|..|...
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 22 2334455 5789999999999998776
No 297
>PRK06116 glutathione reductase; Validated
Probab=97.93 E-value=1.9e-05 Score=67.92 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+...+. +........... ..+++++.. .+..+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-------~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 237 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFD-------PDIRETLVEEME--KKGIRLHTNAVPKAVEKN 237 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccC-------HHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence 468999999999999999997 4999999998875431110 000000000000 013333221 122221
Q ss_pred -cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 -~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++.++.+|.+++|+|..|....
T Consensus 238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 11 355567788999999999999987764
No 298
>PRK07846 mycothione reductase; Reviewed
Probab=97.93 E-value=3.1e-05 Score=66.60 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... + .+... ..+.... ..++++... ....+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH---L----DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence 468999999999999999997 59999999998765311 0 11100 0000000 012333211 122222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++.++.+|.+++|+|..|..+.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 11 355567778999999999999988765
No 299
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.90 E-value=1.4e-05 Score=63.33 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCc--EEeecEEEEcccCCCCchhh------cc--cccccc
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGD--TINADCHFLCTGKPVGSDWL------KD--TILKDS 232 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~--~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~ 232 (274)
.+.+.+.+.+++.|+.+..+.+|.+..-.+++++ +.+.+.. .+.+|..|+|+|.--..-+. .+ ..+++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 4677888999999999999999999887777664 4555554 56899999999953321111 11 111111
Q ss_pred cCCC-----------------CcEEeCCCcccc----CCCCeEEeccccCCCCC
Q 023975 233 LDTH-----------------GMLMVDENLRVK----GQKNIFAIGDITDIRVS 265 (274)
Q Consensus 233 ~~~~-----------------g~~~v~~~~~~~----~~~~i~~~Gd~~~~~~~ 265 (274)
-.++ -++.+|.+++.. ...|+|+||.+.+-.++
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdp 392 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDP 392 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcH
Confidence 1111 136677776652 25789999999876654
No 300
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.89 E-value=1.2e-05 Score=73.43 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF 47 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~ 47 (274)
++|+||||||+||++|..|+ + |++|+|+||.+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 37999999999999999997 3 8999999998863
No 301
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.89 E-value=3.8e-05 Score=65.55 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=59.7
Q ss_pred CcEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccE
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGR 78 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~---------------~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (274)
.+++|||||++|+..|..|+ .+.+|+++++.+.+... + ..... ....... ...+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---~----~~~~~-~~~~~~L-~~~gV~ 244 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---F----DQALR-KYGQRRL-RRLGVD 244 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc---C----CHHHH-HHHHHHH-HHCCCE
Confidence 48999999999999998775 26889999998755311 1 00000 0000000 012455
Q ss_pred EE-EEeeEEEecCeEEeCCCeEEecCEEEEccCCCCC
Q 023975 79 IV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114 (274)
Q Consensus 79 ~~-~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~ 114 (274)
++ ......+....+.+++|+++++|.+++++|..|.
T Consensus 245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 54 3334455566778888989999999999998764
No 302
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=2.6e-05 Score=67.43 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=57.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+.... .+........... ..++++... .+..+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISKLAERALK--KRGIKIKTGAKAKKVEQT 242 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence 368999999999999999987 599999999987653111 0000000000000 013343322 122222
Q ss_pred cC--eEEeCCC---eEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~---~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++ .++.+|.+++|+|..|....
T Consensus 243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 11 2334444 67899999999999987654
No 303
>PRK02106 choline dehydrogenase; Validated
Probab=97.85 E-value=2.1e-05 Score=69.52 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCCCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCC
Q 023975 10 EGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEY 46 (274)
Q Consensus 10 ~~~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~~ 46 (274)
+...+|++|||+|.+|+.+|..|+ +|.+|+|||+++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 445689999999999999999997 4999999999864
No 304
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.85 E-value=3.6e-05 Score=66.50 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=58.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
.++++|||+|+.|+.+|..|+ .|.+|+++++.+.+... + .+........... ..+++++.. .+..+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---~----d~~~~~~l~~~l~--~~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF---L----DDEISDALSYHLR--DSGVTIRHNEEVEKVEGG 245 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc---C----CHHHHHHHHHHHH--HcCCEEEECCEEEEEEEe
Confidence 478999999999999999987 59999999998765311 0 1110000000000 013333321 122222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++.++.+|.+++|+|..|....
T Consensus 246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred CCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 12 344566778999999999999987653
No 305
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.82 E-value=0.00013 Score=61.60 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceeec
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~~ 51 (274)
+++.-|||+|+|+|++|.+|- +|-+|+|+|+.+..|+..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 367889999999999998883 488999999999887543
No 306
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.82 E-value=6.4e-05 Score=64.66 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEE-EeeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 88 (274)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... + .+.... .+.... ..++.+.. ..+..+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH---L----DEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD 238 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc---c----CHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence 468999999999999999997 59999999998765311 1 111000 000000 01233321 1122222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.+++++.+|.+++|+|..|....
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 11 344556778999999999999987654
No 307
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.82 E-value=2.3e-05 Score=63.51 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~ 44 (274)
+...||+|||||.+|.+.|+.|++ |.+|+||||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345899999999999999999986 9999999986
No 308
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.82 E-value=3.6e-05 Score=65.80 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEecC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITEN 90 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (274)
..+|+|||||++|+.+|..|+ .|.+|+++++.+.+... .+ ....... .....+ ..+++++.. ....+...
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--~~----~~~~~~~-~~~~l~-~~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--LF----DEEMNQI-VEEELK-KHEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--cc----CHHHHHH-HHHHHH-HcCCEEEeCCEEEEEecC
Confidence 368999999999999999997 59999999998765210 00 0000000 000000 013444321 22233322
Q ss_pred --eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 91 --EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 91 --~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.+.+.++.++.+|.+++|+|..|..+.
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 237 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNSEL 237 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCHHH
Confidence 235567778999999999999877543
No 309
>PLN03000 amine oxidase
Probab=97.81 E-value=2.2e-05 Score=71.13 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=36.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
...+|+|||||++||++|+.|+ .|++|+|+|+.+.+|+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 3589999999999999999997 4999999999999986543
No 310
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.79 E-value=3.8e-05 Score=65.24 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=60.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc--ceeeecCCccccceeeeccccccccEEE-EEeeEEEe
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--SLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINIT 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (274)
..+++|||+|+.|+.+|..|+ +|++|+++|+.+.++.... .+...+...+.. .++++. ......++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~----------~gi~~~~~~~~~~i~ 205 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK----------YGVELLLGTKVVGVE 205 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH----------CCcEEEeCCceEEEE
Confidence 379999999999999999997 5999999999998874432 111111111100 123332 12223333
Q ss_pred cC----e---EEeCCCeEEecCEEEEccCCCCC
Q 023975 89 EN----E---VLTAEGRRVVYDYLVIATGHKDP 114 (274)
Q Consensus 89 ~~----~---v~~~~~~~~~~~~li~a~G~~~~ 114 (274)
.+ . +...++..+++|.+++++|..|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 22 1 46677888999999999999986
No 311
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.79 E-value=0.00026 Score=62.09 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=74.4
Q ss_pred HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCC--cc--------CC----cCChhHHHHHHHHHHhCCcEEEcCceee
Q 023975 122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS--RL--------LE----FIGPKAGDKTRDWLISKKVDVKLGERVN 187 (274)
Q Consensus 122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~--~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 187 (274)
.+..+++|+.|+..|..+. ..|.++.++.... .. ++ .....+.+.+.+.+++.|++++.++++.
T Consensus 213 dvvIIGgGpaGl~aA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 213 DVLVVGGGPAGAAAAIYAA--RKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 3445677999999999998 5688888775421 00 00 1234567778888888999999999999
Q ss_pred eeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 188 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 188 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
.+...++...+.+.+|+++.+|.||+|+|..+..
T Consensus 291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 9987766777888888899999999999987643
No 312
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.78 E-value=5e-05 Score=65.30 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=57.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.... .+..... .....+ ..++++... .+..+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~-l~~~l~-~~gV~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGF-------DDDMRAL-LARNME-GRGIRIHPQTSLTSITKT 236 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCccc-------CHHHHHH-HHHHHH-HCCCEEEeCCEEEEEEEc
Confidence 468999999999999999887 599999999887643111 0000000 000000 013343322 122222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~ 116 (274)
.. .+.+.++..+.+|.+++|+|..|...
T Consensus 237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 237 DDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 11 34555777899999999999988764
No 313
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.78 E-value=5.3e-05 Score=65.62 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEEe-eEE
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AIN 86 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (274)
..+++|||||+.|+.+|..++ .|.+|+|+|+.+.+..... .+...+...+. ..++++.... ...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~----------~~GI~i~~~~~v~~ 256 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLR----------ANGINIMTNENPAK 256 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHH----------HcCCEEEcCCEEEE
Confidence 368999999999999996553 3899999999876531110 00000000000 0123332211 112
Q ss_pred Ee---c--CeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 87 IT---E--NEVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 87 ~~---~--~~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
+. . ..+.+.++.++++|.+++|+|..|....
T Consensus 257 i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 257 VTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred EEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 21 1 1345556778999999999999987654
No 314
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.77 E-value=0.00027 Score=61.89 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=73.1
Q ss_pred HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCC--ccC-----------C-cCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975 123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL-----------E-FIGPKAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~--~~~-----------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
+..+++|+.|+..|..+. ..+.+++++.... .+. + ...+.+.+.+.+.+++.|++++.+++|.+
T Consensus 215 VvIIGgGpAGl~AA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~ 292 (515)
T TIGR03140 215 VLVVGGGPAGAAAAIYAA--RKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKK 292 (515)
T ss_pred EEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEE
Confidence 344566899999999988 5788888875311 110 0 12345667777888889999999999999
Q ss_pred eccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
+..+++...+.+.+|+.+.+|.+|+|+|..+..
T Consensus 293 I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 293 IETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 987666677888888899999999999987643
No 315
>PLN02976 amine oxidase
Probab=97.76 E-value=3e-05 Score=73.23 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
..++|+|||||++|+++|+.|+ .|++|+|+|+.+.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 4589999999999999999997 599999999999888654
No 316
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=5.6e-05 Score=65.22 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (274)
..+++|||||++|+.+|..|+ .|.+|+++++.+.+.... .+...........+ .++++.... ...++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAHILREKLEN--DGVKIFTGAALKGLNSY 240 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence 368999999999999999887 499999999987653111 00000000000000 134443221 22222
Q ss_pred cCeEEe-CCC--eEEecCEEEEccCCCCCCCh
Q 023975 89 ENEVLT-AEG--RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~~v~~-~~~--~~~~~~~li~a~G~~~~~~~ 117 (274)
...+.. .++ .++.+|.+++|+|..|....
T Consensus 241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 122222 233 36899999999999987654
No 317
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=2.3e-05 Score=65.17 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~ 44 (274)
...|||+|||||.||..||.+.++ |.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 456899999999999999988886 9999998765
No 318
>PLN02507 glutathione reductase
Probab=97.74 E-value=6.5e-05 Score=65.39 Aligned_cols=95 Identities=27% Similarity=0.330 Sum_probs=57.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec-cceeeecCCccccceeeeccccccccEEEEE-eeEEEe-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 88 (274)
..+++|||+|+.|+-.|..|+ .|.+|+|+++.+.+...+ ..+...+...+. ..++++... .+..+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~----------~~GI~i~~~~~V~~i~~ 272 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLE----------GRGINLHPRTNLTQLTK 272 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHH----------hCCCEEEeCCEEEEEEE
Confidence 368999999999999998887 499999999876532110 000000000000 012333222 111221
Q ss_pred -cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 -~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++.++.+|.+++++|..|....
T Consensus 273 ~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 273 TEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred eCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 11 345567778999999999999987754
No 319
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=6.9e-05 Score=64.78 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=57.9
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc-eeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
.+++|||+|..|+.+|..|+ .|.+|+++++.+.+...... ....+...+. ..++++... ....+.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~----------~~gV~i~~~~~v~~v~~~ 247 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFA----------RRGMTVLKRSRAESVERT 247 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHH----------HCCcEEEcCCEEEEEEEe
Confidence 68999999999999999987 59999999987765321100 0000000000 013333322 112221
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.+++++.+|.+++++|..|....
T Consensus 248 ~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 248 GDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred CCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 11 345567788999999999999987654
No 320
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.73 E-value=3.7e-05 Score=71.56 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=31.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..+||+|||||.|||+||..++ .|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4589999999999999999997 5999999999764
No 321
>PRK06370 mercuric reductase; Validated
Probab=97.73 E-value=9.2e-05 Score=64.00 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (274)
..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+..... +.... ......+ ..++++... .+..+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~-------~~~~~-~l~~~l~-~~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRED-------EDVAA-AVREILE-REGIDVRLNAECIRVERD 241 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccC-------HHHHH-HHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence 479999999999999999997 5999999999876542110 00000 0000000 013343322 2222321
Q ss_pred -C--eEEe---CCCeEEecCEEEEccCCCCCCC
Q 023975 90 -N--EVLT---AEGRRVVYDYLVIATGHKDPVP 116 (274)
Q Consensus 90 -~--~v~~---~~~~~~~~~~li~a~G~~~~~~ 116 (274)
. .+.. .++.++.+|.+++|+|..|...
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 1 2222 2345789999999999998765
No 322
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.71 E-value=0.0019 Score=53.83 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=50.0
Q ss_pred eCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC-cEEeecEEEEcccCCC
Q 023975 152 HKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV 219 (274)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~ 219 (274)
.++.+++| .-...+.+.+...+++.||+++++++|++|+ ++...+.+.++ ..+.||.||+|||-.+
T Consensus 73 e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 73 GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 34455666 3345788899999999999999999999992 33466666443 4699999999999644
No 323
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.71 E-value=6.6e-05 Score=62.52 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=60.9
Q ss_pred CcEEEEcCChHHHHHHHHhh----c--C--------CcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--ccc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ----F--S--------ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNG 77 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~----~--g--------~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (274)
.+|+|||||+.|...|-.|+ + . .+|+|+|+.+.+-.... .+......+.+ .++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~-----------~~l~~~a~~~L~~~GV 224 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFP-----------PKLSKYAERALEKLGV 224 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCC-----------HHHHHHHHHHHHHCCC
Confidence 47999999999999997775 1 1 38999999887642111 11111111112 255
Q ss_pred EEEE-EeeEEEecCeEEeCCCe-EEecCEEEEccCCCCC
Q 023975 78 RIVA-SPAINITENEVLTAEGR-RVVYDYLVIATGHKDP 114 (274)
Q Consensus 78 ~~~~-~~~~~~~~~~v~~~~~~-~~~~~~li~a~G~~~~ 114 (274)
++.. ..+..++++.+.++++. +++++.+|+++|.++.
T Consensus 225 ~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 225 EVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred EEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence 5543 34557788888888887 4999999999998844
No 324
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.70 E-value=7.9e-05 Score=64.44 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...+ .+..... ...... ..+++++... +..+.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~-l~~~l~-~~gV~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAA-VEEALA-EEGIEVVTSAQVKAVSVR 236 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHH-HHHHHH-HcCCEEEcCcEEEEEEEc
Confidence 368999999999999999997 599999999987653111 0000000 000000 0133333221 22222
Q ss_pred cC--eEEeC---CCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTA---EGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~---~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+. ++.++.+|.+++|+|..|....
T Consensus 237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 11 22222 2357999999999999987653
No 325
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.67 E-value=0.00041 Score=58.75 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC---CcCChhHH-----H----HHHHHHHhCCcEEEcCceeeeec
Q 023975 123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIGPKAG-----D----KTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~-----~----~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
+-.+++|..|+.+|..|.+..+..+++++.+.+.+. +.....+. + .-.+.+.+.|++++.++.|..+.
T Consensus 6 vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id 85 (396)
T PRK09754 6 IIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLG 85 (396)
T ss_pred EEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEE
Confidence 445677888999999998655556899998765421 11111110 0 01234567899999999998886
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.+. ..+.+++|+++.+|.+|+|||..|.
T Consensus 86 ~~~--~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 86 RDT--RELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCC--CEEEECCCCEEEcCEEEEccCCCCC
Confidence 543 4566778889999999999998874
No 326
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=0.0001 Score=63.89 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+.... .+........... ..++++... .+..+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~--~~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFT--KQGLDIHLGVKIGEIKTG 253 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHH--HcCcEEEeCcEEEEEEEc
Confidence 369999999999999999887 499999999987653110 0000000000000 013333322 222222
Q ss_pred cC--eEEeCC--C--eEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAE--G--RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~--~--~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+...+ + ..+.+|.+++++|..|..+.
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 11 233222 2 46899999999999988764
No 327
>PTZ00058 glutathione reductase; Provisional
Probab=97.65 E-value=0.0001 Score=64.72 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEEe-eEEEec
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE 89 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 89 (274)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+..... .+...+...+. + .++++.... ...+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~--------~--~GV~i~~~~~V~~I~~ 306 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMK--------K--NNINIITHANVEEIEK 306 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHH--------H--CCCEEEeCCEEEEEEe
Confidence 478999999999999999987 4999999999875431110 00000000000 0 123332111 111211
Q ss_pred ----C-eEEe-CCCeEEecCEEEEccCCCCCCChh
Q 023975 90 ----N-EVLT-AEGRRVVYDYLVIATGHKDPVPKT 118 (274)
Q Consensus 90 ----~-~v~~-~~~~~~~~~~li~a~G~~~~~~~~ 118 (274)
. .+.. .++.++.+|.+++|+|..|....+
T Consensus 307 ~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L 341 (561)
T PTZ00058 307 VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDL 341 (561)
T ss_pred cCCCcEEEEECCCCEEEECCEEEECcCCCCCcccc
Confidence 1 1222 334579999999999998876543
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=0.00013 Score=63.14 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=31.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 468999999999999999987 499999999987654
No 329
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.64 E-value=0.00012 Score=63.24 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++|+.+.+..... +........... ..+++++.. .+..+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d-------~~~~~~l~~~l~--~~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNED-------AEVSKEIAKQYK--KLGVKILTGTKVESIDDN 242 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccC-------HHHHHHHHHHHH--HCCCEEEECCEEEEEEEe
Confidence 368999999999999999997 5999999998765431110 000000000000 013343322 122222
Q ss_pred cC--eEEe--CCC--eEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLT--AEG--RRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~--~~~--~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+ .++ .++.+|.+++|+|..|....
T Consensus 243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 11 1222 245 46899999999999987653
No 330
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=0.00011 Score=63.61 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=31.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
.+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 68999999999999999987 599999999987653
No 331
>PRK14694 putative mercuric reductase; Provisional
Probab=97.63 E-value=0.00019 Score=62.21 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=55.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++++...+.. . .+........... ..++++... ....+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~----~----~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~ 247 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ----E----DPAVGEAIEAAFR--REGIEVLKQTQASEVDYN 247 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC----C----CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence 368999999999999999987 5999999997543321 0 0100000000000 013444332 222222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+++ .++.+|.+++|+|..|....
T Consensus 248 ~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 248 GREFILETNA-GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CCEEEEEECC-CEEEeCEEEEccCCCCCcCC
Confidence 22 233333 46999999999999987654
No 332
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.62 E-value=0.00042 Score=59.66 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=68.0
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc------CCcCC----h---hHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEFIG----P---KAGDKTRDWLISKKVDVKLGERVNLDSV 191 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~------~~~~~----~---~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 191 (274)
.+++|..|+.+|..+.+..+..+++++.+++.+ ++... . .+.....+.+++.|+++..++.|..+..
T Consensus 5 IIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~ 84 (444)
T PRK09564 5 IIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDA 84 (444)
T ss_pred EECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEEC
Confidence 466788899999988754445689999988753 11110 1 1122234567788999999999999987
Q ss_pred CCCceeEEC-CCCcEEe--ecEEEEcccCCCCch
Q 023975 192 SEGSDTYLT-STGDTIN--ADCHFLCTGKPVGSD 222 (274)
Q Consensus 192 ~~~~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~ 222 (274)
+++.+.+.. .+++.+. +|.+|+|||..|..+
T Consensus 85 ~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 85 KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 766655543 2355666 999999999987644
No 333
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.59 E-value=0.00014 Score=63.32 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=55.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe---
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--- 88 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 88 (274)
.+++|||||+.|+.+|..|+ .|.+|+++++...+......+...+...+ . ..+++++... ...+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l--------~--~~GV~i~~~~~v~~v~~~~ 252 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYM--------K--EQGTLFLEGVVPINIEKMD 252 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHH--------H--HcCCEEEcCCeEEEEEEcC
Confidence 58999999999999999987 59999999874322100000000000000 0 0123332221 11111
Q ss_pred cC-eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN-EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~-~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.+.++.++.+|.+++++|..|....
T Consensus 253 ~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 253 DKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred CeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 11 345556778899999999999987654
No 334
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.56 E-value=9.5e-05 Score=64.89 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=43.9
Q ss_pred HHHHHHHhCCcEEEcCceeeeeccCCCcee---EECCCC---c-EEeecEEEEcccCCCCchhhccccc
Q 023975 168 KTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTG---D-TINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g---~-~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
.+...++..++.+.+++.++.+..++++.+ +...++ + ...++.||++.|...++.++...+.
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 344456777899999999999998877543 333333 2 3578999999998876666655443
No 335
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=0.0002 Score=61.94 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=31.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++|+.+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 478999999999999999887 59999999987765
No 336
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.51 E-value=0.00052 Score=63.14 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=69.0
Q ss_pred ccCCchhhhHHHHhhhhC-CCCeEEEEeCCCccC-C--cCCh---------hHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975 126 YQAGPTGVELAGEIAVDF-PEKKVTLVHKGSRLL-E--FIGP---------KAGDKTRDWLISKKVDVKLGERVNLDSVS 192 (274)
Q Consensus 126 ~~~g~~~~e~a~~l~~~~-~~~~v~~~~~~~~~~-~--~~~~---------~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 192 (274)
+++|..|+..|..+.... .+.+++++.+.+.+. . .... .+.....+.+++.|++++.++.|+.+..+
T Consensus 4 IG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~ 83 (785)
T TIGR02374 4 VGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQIDTD 83 (785)
T ss_pred ECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECC
Confidence 567888999988876433 456899999887642 1 1111 01111245677889999999999998754
Q ss_pred CCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975 193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
...|.+.+|+++.+|.+|+|||..|..+.++
T Consensus 84 --~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 84 --QKQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred --CCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 3467778888999999999999987654333
No 337
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.49 E-value=0.00058 Score=57.16 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=65.8
Q ss_pred HccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCC-cCC----------hhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975 125 QYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLE-FIG----------PKAGDKTRDWLISKKVDVKLGERVNLDSVS 192 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 192 (274)
.+++|..|+..|..+..+ .+..+++++.+++...- ... ..+...+.+.+++.|++++.+ +|+.+..+
T Consensus 4 IiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~ 82 (364)
T TIGR03169 4 LIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPD 82 (364)
T ss_pred EECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecc
Confidence 356677888888887532 34679999988765311 111 112223445567789999875 78888655
Q ss_pred CCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975 193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 224 (274)
Q Consensus 193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~ 224 (274)
++ .|.+++|+++.+|.+|+|||..+..+.+
T Consensus 83 ~~--~V~~~~g~~~~yD~LviAtG~~~~~~~i 112 (364)
T TIGR03169 83 RR--KVLLANRPPLSYDVLSLDVGSTTPLSGV 112 (364)
T ss_pred cC--EEEECCCCcccccEEEEccCCCCCCCCC
Confidence 43 6777888889999999999988765433
No 338
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.47 E-value=0.00034 Score=58.50 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=65.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEEEEeeE-EEe
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAI-NIT 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~ 88 (274)
...|+++|+|..|+-+|..|. ++.+|+++++.+.+-. .+.. ........+++. .++++..+.+ .+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~lf~----~~i~~~~~~y~e~kgVk~~~~t~~s~l~ 282 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RLFG----PSIGQFYEDYYENKGVKFYLGTVVSSLE 282 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hhhh----HHHHHHHHHHHHhcCeEEEEecceeecc
Confidence 568999999999999999997 6999999999876431 0111 111122223332 3455443332 222
Q ss_pred c----C--eEEeCCCeEEecCEEEEccCCCCCCChhH
Q 023975 89 E----N--EVLTAEGRRVVYDYLVIATGHKDPVPKTR 119 (274)
Q Consensus 89 ~----~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~ 119 (274)
. + .|.+.+++++.+|.+++.+|..|..+...
T Consensus 283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred cCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 1 1 67788999999999999999998876644
No 339
>PLN02785 Protein HOTHEAD
Probab=97.43 E-value=0.00018 Score=63.71 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (274)
.||++|||||.+|+.+|..|..+.+|+|||++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 5999999999999999999987899999999864
No 340
>PLN02546 glutathione reductase
Probab=97.43 E-value=0.00027 Score=62.16 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
..+|+|||||+.|+-.|..|+ .|.+|+++++.+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 469999999999999999987 49999999987754
No 341
>PRK13748 putative mercuric reductase; Provisional
Probab=97.42 E-value=0.00043 Score=61.44 Aligned_cols=94 Identities=20% Similarity=0.328 Sum_probs=54.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+-+|..|+ .|.+|+|+++...+.. . .+........... ..++++... ....+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~ 339 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEAVTAAFR--AEGIEVLEHTQASQVAHV 339 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHHHHHHHH--HCCCEEEcCCEEEEEEec
Confidence 368999999999999999987 4999999998543211 0 0100000000000 013333221 112221
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+.++++ .+.+|.+++|+|..|....
T Consensus 340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 11 2333344 6899999999999987653
No 342
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.42 E-value=0.00059 Score=58.75 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=56.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEE-ec
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI-TE 89 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (274)
..++|+|||+|.+|+-.|..|.. +.+|+++.+...... ......+ .. ++. .......+ ..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----~~~~~~~---~~----------~v~-~~~~I~~~~~~ 264 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT----YEKLPVP---QN----------NLW-MHSEIDTAHED 264 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc----cccCcCC---CC----------ceE-ECCcccceecC
Confidence 35789999999999999999985 789999998653210 0000000 00 000 00001111 12
Q ss_pred CeEEeCCCeEEecCEEEEccCCCCCCChh
Q 023975 90 NEVLTAEGRRVVYDYLVIATGHKDPVPKT 118 (274)
Q Consensus 90 ~~v~~~~~~~~~~~~li~a~G~~~~~~~~ 118 (274)
..+.+.+|..+.+|.+|+|||..+..|-+
T Consensus 265 g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL 293 (461)
T PLN02172 265 GSIVFKNGKVVYADTIVHCTGYKYHFPFL 293 (461)
T ss_pred CeEEECCCCCccCCEEEECCcCCcccccc
Confidence 35778889889999999999998766553
No 343
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.38 E-value=0.0011 Score=61.20 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=69.2
Q ss_pred HHHHccCCchhhhHHHHhhhhC--CCCeEEEEeCCCccC------C-cCCh----hHHHHHHHHHHhCCcEEEcCceeee
Q 023975 122 RLNQYQAGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIGP----KAGDKTRDWLISKKVDVKLGERVNL 188 (274)
Q Consensus 122 ~~~~~~~g~~~~e~a~~l~~~~--~~~~v~~~~~~~~~~------~-~~~~----~~~~~~~~~~~~~gv~i~~~~~v~~ 188 (274)
++..+++|..|+..+..+.+.. .+.+++++.+.+.+. + .+.. .+.....+.+++.|++++.++.|..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~ 84 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT 84 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence 3445677888888888886432 356899998887642 0 0101 1111123456778999999999988
Q ss_pred eccCCCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975 189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 224 (274)
Q Consensus 189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~ 224 (274)
+..+ ...|.+.+|+++.+|.+|+|||..|..+.+
T Consensus 85 Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 85 INRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EeCC--CcEEEECCCcEEECCEEEECCCCCcCCCCC
Confidence 8643 345677888899999999999998765433
No 344
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.37 E-value=0.00042 Score=59.54 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=55.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+..... +..... +....+ ..++++... ....+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~~-l~~~l~-~~gV~v~~~~~v~~i~~~ 228 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED-------RDIADN-IATILR-DQGVDIILNAHVERISHH 228 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC-------HHHHHH-HHHHHH-hCCCEEEeCCEEEEEEEc
Confidence 368999999999999999997 5999999999765431110 000000 000000 013333321 122222
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+..+++ ++.+|.+++|+|..|....
T Consensus 229 ~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~ 258 (441)
T PRK08010 229 ENQVQVHSEHA-QLAVDALLIASGRQPATAS 258 (441)
T ss_pred CCEEEEEEcCC-eEEeCEEEEeecCCcCCCC
Confidence 11 2333344 5889999999999987653
No 345
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.36 E-value=0.00046 Score=59.95 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~ 44 (274)
..+++|||||+.|+-+|..|+ .|.+|+++++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 358999999999999999997 59999999974
No 346
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.34 E-value=0.00021 Score=62.87 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=41.6
Q ss_pred HHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCC-Cc---EEeecEEEEcccCCCCchhhccccc
Q 023975 169 TRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTST-GD---TINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 169 ~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~-g~---~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
+....++.|++|++++.|.+|..+++. ..|++.+ ++ .+.++.||+|.|..-.+.+|...|+
T Consensus 200 l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 200 LHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred hhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 334444678999999999999876553 3454432 22 3589999999997655666655444
No 347
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.30 E-value=6e-05 Score=56.14 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g 48 (274)
..||+|||+|.+||++||.+. +..+|.+||.+-.+|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 369999999999999999996 389999999987765
No 348
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.30 E-value=0.0004 Score=55.60 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+||+|||+|.+||.+|.+|+ +|.+|+++|++..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 589999999999999999998 6999999998764
No 349
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.27 E-value=0.00016 Score=58.72 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEec-
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE- 89 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 89 (274)
.++++|||||..||..+-...+ |.+||++|-.+.++.. +...+...+..-... +++.|...+ +.....
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---mD~Eisk~~qr~L~k------QgikF~l~tkv~~a~~~ 281 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---MDGEISKAFQRVLQK------QGIKFKLGTKVTSATRN 281 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---cCHHHHHHHHHHHHh------cCceeEeccEEEEeecc
Confidence 4789999999999999977765 9999999998888743 211111111000000 122332111 111111
Q ss_pred -C---eEEeC-----CCeEEecCEEEEccCCCCCCChhHHHH
Q 023975 90 -N---EVLTA-----EGRRVVYDYLVIATGHKDPVPKTRTER 122 (274)
Q Consensus 90 -~---~v~~~-----~~~~~~~~~li~a~G~~~~~~~~~~~~ 122 (274)
. .+..+ ...++++|.+++++|.+|...++..+.
T Consensus 282 ~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~ 323 (506)
T KOG1335|consen 282 GDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEK 323 (506)
T ss_pred CCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhh
Confidence 1 22221 224788999999999999988765544
No 350
>PRK14727 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.001 Score=57.81 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=54.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (274)
..+++|||+|+.|+..|..|+ .|.+|+++++...+.. . .+........... ..+++++.. .+..+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLGETLTACFE--KEGIEVLNNTQASLVEHD 257 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence 368999999999999999987 5999999997532211 0 0000000000000 013333321 111221
Q ss_pred cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (274)
Q Consensus 89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~ 117 (274)
.. .+..+++ ++.+|.+++|+|..|....
T Consensus 258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 258 DNGFVLTTGHG-ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred CCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence 12 2334444 6889999999999987653
No 351
>PRK10262 thioredoxin reductase; Provisional
Probab=97.25 E-value=0.00075 Score=55.42 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (274)
..+|+|||+|..|+.+|..|++ +.+|+++++.+.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 4699999999999999999974 8999999997754
No 352
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.24 E-value=0.00065 Score=60.84 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g 48 (274)
..+|+|||||+.|+..|..|+ .|.+|+++|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 368999999999999998887 599999999987654
No 353
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.04 E-value=0.00036 Score=57.57 Aligned_cols=90 Identities=27% Similarity=0.338 Sum_probs=53.7
Q ss_pred CcEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VN 76 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~---------------~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 76 (274)
..++||||||.|+..|.+|+ +-.+|+++|..+..-..+. .......++.+ .+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFd-----------krl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFD-----------KRLVEYAENQFVRDG 287 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHH-----------HHHHHHHHHHhhhcc
Confidence 57999999999999998886 1358999999875431110 00000111111 13
Q ss_pred cEEEEE-eeEEEecCeEEeC--CC--eEEecCEEEEccCCCCC
Q 023975 77 GRIVAS-PAINITENEVLTA--EG--RRVVYDYLVIATGHKDP 114 (274)
Q Consensus 77 ~~~~~~-~~~~~~~~~v~~~--~~--~~~~~~~li~a~G~~~~ 114 (274)
+++... .+..++.+.+... +| ..++|--++.+||..+.
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence 444333 2334444433333 33 57899999999998744
No 354
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.00 E-value=0.0082 Score=53.22 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=65.4
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc-----------CCc----CChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL-----------LEF----IGPKAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
.+++|..|+..|..+. ..+.+++++.+...- .+. ....+.+.+.+.+++.|+++. +++|..+
T Consensus 9 IIGgGpAGL~AA~~la--r~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i 85 (555)
T TIGR03143 9 IIGGGPAGLSAGIYAG--RAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDV 85 (555)
T ss_pred EECCCHHHHHHHHHHH--HCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEE
Confidence 4566778888888887 457888888865310 011 112456667777788899985 6778888
Q ss_pred ccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 222 (274)
Q Consensus 190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 222 (274)
..+++...+.+.++ .+.+|.+|+|||..|...
T Consensus 86 ~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 86 DFDGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EecCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 76555456666665 689999999999987643
No 355
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.98 E-value=0.0014 Score=55.23 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
..+...+.+.+++ |++++.+++|.+++.+++.+.+++++|+.+.||.||+|+|...
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 4577888888888 9999999999999877777888888888899999999999764
No 356
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.98 E-value=0.0008 Score=56.97 Aligned_cols=58 Identities=10% Similarity=-0.093 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCC
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
.++.+.+-+...-.|....+++.|.++..++++ ..-..++|+++.|+.||....+.|.
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~ 290 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE 290 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence 368888888888899999999999999875433 2222358889999999988887763
No 357
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.91 E-value=0.0012 Score=57.60 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCc
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF 47 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~ 47 (274)
...||.+|||||-||...|..|.+ .++|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 346999999999999999999985 6999999998765
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.87 E-value=0.002 Score=60.21 Aligned_cols=91 Identities=15% Similarity=-0.039 Sum_probs=67.9
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|+.|+..|..|. ..|.+|+++.+.+.+.. ..+..+.+...+.+++.|+++++++.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~La--r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--- 380 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLA--VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--- 380 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHH--HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---
Confidence 466777888999999999998 67899999998765322 1234556666777888999999987652
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCC-CC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKP-VG 220 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~ 220 (274)
..+.+++.....+|+||+|||.. |.
T Consensus 381 -----~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 -----KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -----cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 23555555556799999999984 53
No 359
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.72 E-value=0.0018 Score=53.31 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPK 44 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~ 44 (274)
.+||+|+||||+|++.|..|+ ...+|+++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 689999999999999999886 36799999987
No 360
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.71 E-value=0.0045 Score=51.07 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
...+...+.+.+++.|++++.+++|++++.+++.+ .|.+.+| ++.||.||+|+|...
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 35678888899999999999999999998776654 4677777 799999999999654
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0028 Score=55.13 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+|+|||+|.+|+++|..|+ +|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999997 599999999765
No 362
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.67 E-value=0.0016 Score=49.39 Aligned_cols=136 Identities=29% Similarity=0.341 Sum_probs=93.8
Q ss_pred HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---cCC--------h---hHH--H--HHHHHHHhCCcEEEcCcee
Q 023975 125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIG--------P---KAG--D--KTRDWLISKKVDVKLGERV 186 (274)
Q Consensus 125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---~~~--------~---~~~--~--~~~~~~~~~gv~i~~~~~v 186 (274)
.+++|..|+.+|..+. ..+.++.++.+.+.... ... . ... . .+.+.+...++++..+.++
T Consensus 4 IIGgG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 81 (201)
T PF07992_consen 4 IIGGGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKV 81 (201)
T ss_dssp EESSSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTE
T ss_pred EEecHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeecccc
Confidence 3567889999999998 67899999976553210 000 0 001 0 3334456789999988999
Q ss_pred eeeccCCCce-----eE---ECCCCcEEeecEEEEcccCCCCchhhcc--------------------------------
Q 023975 187 NLDSVSEGSD-----TY---LTSTGDTINADCHFLCTGKPVGSDWLKD-------------------------------- 226 (274)
Q Consensus 187 ~~i~~~~~~~-----~v---~~~~g~~~~~d~vv~a~G~~~~~~~~~~-------------------------------- 226 (274)
.++....+.+ .+ ...++.++.+|.+|+|+|..|..+.++.
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~ 161 (201)
T PF07992_consen 82 VSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTE 161 (201)
T ss_dssp EEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTT
T ss_pred ccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccccc
Confidence 9997666531 22 3556678999999999997654322211
Q ss_pred ---cccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975 227 ---TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263 (274)
Q Consensus 227 ---~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~ 263 (274)
...++.++++|++.||+++++ +.|+||++|||++.+
T Consensus 162 ~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 162 FLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp TSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred cccccccccccccccccccccccc-ccccccccccccccC
Confidence 112335678899999999999 799999999999875
No 363
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.64 E-value=0.016 Score=48.38 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=39.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccC
Q 023975 165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
+...+.+.+++ .++++. ..+|+++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 45556677776 688886 4679999766654 5788999999999999999998
No 364
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.59 E-value=0.003 Score=46.04 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+|+|||||..|.++|..|+ +|++|+++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 5899999999999999997 699999999976
No 365
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.027 Score=45.78 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975 162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 222 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 222 (274)
.+.+.+.+.+..+..|+++.. ..|..++..++.+.+.+++++ ++|+.||+|||..+...
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 456777788888888999988 677777765557788889887 99999999999876543
No 366
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.58 E-value=0.01 Score=51.54 Aligned_cols=34 Identities=38% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~ 46 (274)
.++|+|||+|..|+-+|..+. .|. +|++++....
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~ 316 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM 316 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence 478999999999999997665 565 7888876554
No 367
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0028 Score=49.10 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=30.5
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
++++|||+|..|.+.|..|. .|++|+++|+.+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 47999999999999999997 59999999997653
No 368
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.48 E-value=0.0047 Score=53.42 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=63.1
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..+. ..+.+++++.+.+.+. + .....+.....+.+++.|++++.++.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~--~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLA--RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHH--hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 356777788999999999988 5688999998876542 1 12345666677778889999999887621
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
.+.+.+. .+.+|.||+|||..
T Consensus 216 ------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 ------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred ------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 27799999999975
No 369
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0037 Score=54.11 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=29.5
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
+|+|||.|++|+++|+.|. +|++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999987 59999999987654
No 370
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.37 E-value=0.024 Score=49.83 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=27.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
..++|+|||+|.+|.-+|..|++ ..+|.+.-|+..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999985 667888777654
No 371
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.36 E-value=0.017 Score=48.12 Aligned_cols=96 Identities=17% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc---------CChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975 121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDSV 191 (274)
Q Consensus 121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 191 (274)
+++..+++|+.|++.|..+. ..+.+++++.+.+.+... .+........+.+.+.|+++..++.+..+..
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLA--CLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CEEEEECcCHHHHHHHHHHH--HCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 45667778889999999988 568899999987665321 1122233344556667999999988865532
Q ss_pred ----CCCceeEEC--CCCcEEeecEEEEcccCC
Q 023975 192 ----SEGSDTYLT--STGDTINADCHFLCTGKP 218 (274)
Q Consensus 192 ----~~~~~~v~~--~~g~~~~~d~vv~a~G~~ 218 (274)
..+...... .++..+.+|.||+|||..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 111111111 112247899999999983
No 372
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0034 Score=50.32 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
...|.|||||.||..+||.++ +|..|.++|-.+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 357999999999999999997 5999999996654
No 373
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.33 E-value=0.0052 Score=41.21 Aligned_cols=34 Identities=44% Similarity=0.625 Sum_probs=29.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+.++|+|||||..|..-+..|. .|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4579999999999999998886 499999999874
No 374
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.28 E-value=0.037 Score=49.38 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccc
Q 023975 170 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT 227 (274)
Q Consensus 170 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~ 227 (274)
.+..+++||+++.+.+++.+. .+...|.++.|.++.+|.+|+|||..|....+++.
T Consensus 66 ~dwy~~~~i~L~~~~~v~~id--r~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~ 121 (793)
T COG1251 66 NDWYEENGITLYTGEKVIQID--RANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGS 121 (793)
T ss_pred hhhHHHcCcEEEcCCeeEEec--cCcceEEccCCcEeecceeEEecCccccccCCCCC
Confidence 466788999999999999875 44567889999999999999999998876555443
No 375
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.25 E-value=0.015 Score=54.43 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..|+ ..+.+++++.+.+.+.. ...........+.+++.|+++++++.+ .+
T Consensus 539 gKkVaIIGgGPAGLsAA~~La--r~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di- 614 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLA--RAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL- 614 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence 456778888999999999998 56889999998765321 122334444556777889999999876 22
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+++.+...+|.||+|||..+
T Consensus 615 --------~le~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 615 --------TVEQLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred --------EhhhheeccCCEEEECcCCCC
Confidence 222334566999999999865
No 376
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.25 E-value=0.0059 Score=45.55 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=26.5
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
+|.|||+|..|...|..++ .|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 5899999999999998886 5999999999764
No 377
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0069 Score=49.01 Aligned_cols=37 Identities=41% Similarity=0.387 Sum_probs=29.8
Q ss_pred CCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 10 ~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
.-..+||+|||||-+|+.+|.-|+. =..|+++|=.+.
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 3456899999999999999999984 446899985544
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.15 E-value=0.0048 Score=46.22 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=25.8
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||.|..||..|..|+ .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 47999999999999999998 5999999998765
No 379
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.14 E-value=0.01 Score=45.22 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.++|+|||||.+|..-+..|. .|++|+|+++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 479999999999999998886 5999999997643
No 380
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.13 E-value=0.0086 Score=49.00 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
..++|+|||+|..|.+.|..|++ |++|+++.|++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999985 99999999865
No 381
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.0072 Score=49.84 Aligned_cols=44 Identities=34% Similarity=0.567 Sum_probs=38.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecccee
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR 55 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~ 55 (274)
..+|++|||.|..=...|.+..+ |.+|+=+|++++.|+.|..+.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS 51 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS 51 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence 35899999999988777777765 999999999999999998664
No 382
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.0092 Score=51.52 Aligned_cols=33 Identities=48% Similarity=0.728 Sum_probs=30.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.++++|+|+|..|+++|..|. .|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999997 599999999875
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.05 E-value=0.0088 Score=48.22 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
..+|.|||+|.-|...|..+. .|++|+++|+.+..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 358999999999999998876 59999999988653
No 384
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.97 E-value=0.02 Score=49.42 Aligned_cols=90 Identities=19% Similarity=0.107 Sum_probs=62.8
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
..++..+++|..|+..|..+. ..+.+++++.+.+.+. + ..+..+.....+.+++.|++++.++.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~--~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--- 207 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELA--KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG--- 207 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHH--HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC---
Confidence 356777888999999999998 5688999999876441 1 1234455666677888999999987541
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccC-CCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGK-PVG 220 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~ 220 (274)
..+.+.+. ...+|.||+|||. .|.
T Consensus 208 -----~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 208 -----KTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -----CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 11223322 2468999999997 454
No 385
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.92 E-value=0.015 Score=50.40 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc----C--C----hhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----I--G----PKAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~----~--~----~~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
.+++..+++|+.|+..|..|.....+.+|+++.+.+.+... . + ..+...+.+.++..+++++.|..+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~- 104 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR- 104 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc-
Confidence 45688899999999999999743478999999998865321 1 1 12334455566778899988776521
Q ss_pred ccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+.+++-. ..+|.||+|+|..+
T Consensus 105 -------dvtl~~L~-~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 -------DVSLSELR-DLYHVVVLAYGAES 126 (491)
T ss_pred -------cccHHHHh-hhCCEEEEecCCCC
Confidence 13333332 46999999999875
No 386
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.23 Score=42.79 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred HHHccCCchhhhHHHHhhhhCCCCe-EEEEeCCCcc-------------------------CCc-----C--ChhHHHHH
Q 023975 123 LNQYQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRL-------------------------LEF-----I--GPKAGDKT 169 (274)
Q Consensus 123 ~~~~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~-------------------------~~~-----~--~~~~~~~~ 169 (274)
+..+++|++|+-++..|.+ .+.. +.++.+.+.+ .+. + ...+.+.+
T Consensus 11 v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 11 VAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred EEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 4456667778888887774 3333 6666665422 000 0 01256677
Q ss_pred HHHHHhCCc--EEEcCceeeeec--cCCCceeEECCCCcE--EeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeC
Q 023975 170 RDWLISKKV--DVKLGERVNLDS--VSEGSDTYLTSTGDT--INADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVD 242 (274)
Q Consensus 170 ~~~~~~~gv--~i~~~~~v~~i~--~~~~~~~v~~~~g~~--~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~ 242 (274)
...+++.+. .+..++.|..+. .+.+...|.++++.. +.+|.||+|||... .+.++. .|. -+-.|.+.-.
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~-~P~iP~~~G~---~~f~g~~~HS 164 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS-EPYIPDFAGL---DEFKGRILHS 164 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC-CCCCCCCCCc---cCCCceEEch
Confidence 777777654 344455554444 444567888888765 55999999999732 222222 222 1123443332
Q ss_pred CCccc---cCCCCeEEeccccC
Q 023975 243 ENLRV---KGQKNIFAIGDITD 261 (274)
Q Consensus 243 ~~~~~---~~~~~i~~~Gd~~~ 261 (274)
.++.. -..++|-+||--++
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred hcCCCccccCCCeEEEECCCcc
Confidence 22221 14578888887554
No 387
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.88 E-value=0.011 Score=54.37 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975 122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS 192 (274)
Q Consensus 122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 192 (274)
++..+++|..|+..|..+. ..+.+++++.+.+.+. | ..+..+.+...+.+++.|++++.++.+..
T Consensus 433 ~V~IIGaGpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---- 506 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLA--KRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---- 506 (752)
T ss_pred EEEEECcCHHHHHHHHHHH--HCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC----
Confidence 3444566999999999998 5688999998765421 1 11334555556677889999999876521
Q ss_pred CCceeEECCCCcEEeecEEEEcccC-CCCc
Q 023975 193 EGSDTYLTSTGDTINADCHFLCTGK-PVGS 221 (274)
Q Consensus 193 ~~~~~v~~~~g~~~~~d~vv~a~G~-~~~~ 221 (274)
.+.+++.....+|.||+|||. .|..
T Consensus 507 ----~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 ----TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred ----cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 123333345679999999997 4543
No 388
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.86 E-value=0.016 Score=42.10 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=28.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~ 44 (274)
...+|+|||||..|..-|..|. .|++|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3589999999999999998875 69999999643
No 389
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.85 E-value=0.012 Score=42.50 Aligned_cols=30 Identities=40% Similarity=0.628 Sum_probs=27.7
Q ss_pred EEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
|+|+|+|..|...|+.|+ .|++|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 789999999999999997 599999999976
No 390
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.85 E-value=0.012 Score=50.05 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975 165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 217 (274)
Q Consensus 165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 217 (274)
+...+...+...|.+|+++++|++|+.+++++.+.+.+|+++.||.||+|++.
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPP 263 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-H
T ss_pred hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCch
Confidence 34444555555677999999999999999999999999999999999999884
No 391
>PRK12831 putative oxidoreductase; Provisional
Probab=95.82 E-value=0.032 Score=48.38 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------Cc--CCh-hHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGP-KAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~~--~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
.+.+..+++|+.|+..|..+. ..+.+++++.+.+.+. +. ... .+.....+.+++.|+++++++.+..
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLA--KMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHH--hCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 456777888999999999998 5688999998765431 11 112 2555556778889999999986621
Q ss_pred ccCCCceeEECCCC-cEEeecEEEEcccC-CCC
Q 023975 190 SVSEGSDTYLTSTG-DTINADCHFLCTGK-PVG 220 (274)
Q Consensus 190 ~~~~~~~~v~~~~g-~~~~~d~vv~a~G~-~~~ 220 (274)
.+.+++. +.+.+|.||+|||. .|.
T Consensus 217 -------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 -------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred -------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1222222 24579999999997 454
No 392
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.79 E-value=0.0076 Score=51.36 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=26.0
Q ss_pred hHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975 23 VAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (274)
Q Consensus 23 ~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~ 52 (274)
+|||+||++|+ +|++|+|+|+++.+|+...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 58999999998 5999999999999996543
No 393
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.0056 Score=49.48 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=58.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc-eeeecCCccccceeeeccccccccEEEEEe----eE
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVASP----AI 85 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 85 (274)
..++++|||||..++..|--++ .|.++.++=|.+.+--.+.. ++..+..++..+ ++.+.... .+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~----------ginvh~~s~~~~v~ 257 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGR----------GINVHKNSSVTKVI 257 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhc----------ceeecccccceeee
Confidence 4589999999999988887776 59999998887765311111 111111111111 11111110 01
Q ss_pred EEe-c-CeEEeCCCeEEecCEEEEccCCCCCCChhHHHHH
Q 023975 86 NIT-E-NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL 123 (274)
Q Consensus 86 ~~~-~-~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~ 123 (274)
.-+ . ..+....+.....|.+++|+|..|...++..+++
T Consensus 258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~v 297 (478)
T KOG0405|consen 258 KTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENV 297 (478)
T ss_pred ecCCCceEEEEeccccccccEEEEEecCCCCcccccchhc
Confidence 111 1 1344455655568999999999998877554444
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.75 E-value=0.018 Score=43.80 Aligned_cols=33 Identities=39% Similarity=0.711 Sum_probs=28.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~ 44 (274)
..++|+|||||-.|...|..|. .|++|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999998886 59999999864
No 395
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.71 E-value=0.012 Score=48.50 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=29.0
Q ss_pred CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
++|.|||+|..||+.|..|+. ||+|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999985 99999999765
No 396
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.016 Score=47.39 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||+|..|.+.|..|. +|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 47999999999999999987 5999999999864
No 397
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.51 E-value=0.02 Score=46.70 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (274)
++|+|||+|..|...|..|++ |++|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 589999999999999999975 99999999963
No 398
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.51 E-value=0.02 Score=42.25 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=28.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+|+|+|+|.+|..||..|. .|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 469999999999999999997 499999999864
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.45 E-value=0.021 Score=47.38 Aligned_cols=32 Identities=38% Similarity=0.577 Sum_probs=28.8
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
++|.|||+|..|...|..|+ .|++|+++++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 57999999999999999997 599999999853
No 400
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.41 E-value=0.034 Score=39.34 Aligned_cols=34 Identities=41% Similarity=0.628 Sum_probs=29.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~ 45 (274)
...+++|||+|-+|-+++++|. .|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4589999999999999999997 5876 99999864
No 401
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.32 E-value=0.037 Score=47.15 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCcEEEcCceeeeeccCCCceeEE-CCCCcEEeecEEEEcccCC
Q 023975 167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a~G~~ 218 (274)
+.+.+.+++.|++|+++++|++|+.+++++.++ ..+|+++.||.||+++...
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 447777888899999999999999887765443 3467789999999998743
No 402
>PRK04148 hypothetical protein; Provisional
Probab=95.30 E-value=0.017 Score=40.46 Aligned_cols=33 Identities=42% Similarity=0.427 Sum_probs=28.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..++++||.| .|.+.|..|+ .|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 9998898887 5999999998765
No 403
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.28 E-value=0.047 Score=51.88 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=57.8
Q ss_pred ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce
Q 023975 126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD 196 (274)
Q Consensus 126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~ 196 (274)
+++|+.|+..|..|. ..+.+++++.+.+.+. + .....+.+...+.+++.|+++.+++.+. ..
T Consensus 436 IG~GPAGLsaA~~La--~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg------~~- 506 (1006)
T PRK12775 436 CGSGPAGLAAAADLV--KYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG------KT- 506 (1006)
T ss_pred ECCCHHHHHHHHHHH--HcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC------Cc-
Confidence 344899999999998 5688999998875432 1 1234566677778889999999986541 11
Q ss_pred eEECCCC-cEEeecEEEEcccCC-CC
Q 023975 197 TYLTSTG-DTINADCHFLCTGKP-VG 220 (274)
Q Consensus 197 ~v~~~~g-~~~~~d~vv~a~G~~-~~ 220 (274)
+...+- +...+|.||+|||.. |.
T Consensus 507 -~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 507 -FTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -cCHHHHhhccCCCEEEEecCCCCCC
Confidence 111111 124589999999984 44
No 404
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.21 Score=38.10 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=77.8
Q ss_pred ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc--------------------------------------CChhHHH
Q 023975 126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IGPKAGD 167 (274)
Q Consensus 126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~~~~~~ 167 (274)
.++|++++..|..|+ ..+.++.++.++-.+..+ ....+..
T Consensus 36 VGaGPsGLtAAyyLA--k~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~s 113 (262)
T COG1635 36 VGAGPSGLTAAYYLA--KAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFAS 113 (262)
T ss_pred ECcCcchHHHHHHHH--hCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHHHH
Confidence 344888999999998 457888888775433110 0122334
Q ss_pred HHHHHHHhCCcEEEcCceeeeeccCCC-ce-eEECC------CC-----cEEeecEEEEcccCCCCc-hhhcccc--ccc
Q 023975 168 KTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS------TG-----DTINADCHFLCTGKPVGS-DWLKDTI--LKD 231 (274)
Q Consensus 168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~------~g-----~~~~~d~vv~a~G~~~~~-~~~~~~~--~~~ 231 (274)
.+....-+.|.++.....|+++...++ ++ .+..+ .+ -.++++.||-|||..... .++...+ +..
T Consensus 114 kl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~ 193 (262)
T COG1635 114 KLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGI 193 (262)
T ss_pred HHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcccccc
Confidence 444555567899999999999987766 33 23221 12 378999999999976542 3333222 111
Q ss_pred ccCCC--------CcEEeCCCccccCCCCeEEecccc
Q 023975 232 SLDTH--------GMLMVDENLRVKGQKNIFAIGDIT 260 (274)
Q Consensus 232 ~~~~~--------g~~~v~~~~~~~~~~~i~~~Gd~~ 260 (274)
.+... -.+.|....+ -+|++|++|=.+
T Consensus 194 ~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~ 228 (262)
T COG1635 194 EVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAV 228 (262)
T ss_pred ccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhH
Confidence 11111 1133333344 389999999765
No 405
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.23 E-value=0.066 Score=46.74 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=61.4
Q ss_pred HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975 121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 191 (274)
Q Consensus 121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 191 (274)
+++..+++|..|+..|..|. ..+.+++++.+.+.+. + ..+..+.....+.+++.|++++.++.+.. .
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~--~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLN--RAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CEEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 46677788899999999998 5678999998876542 1 12334555556778889999999988741 1
Q ss_pred CCCceeEECCCCcEEeecEEEEcccCC
Q 023975 192 SEGSDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 192 ~~~~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
+. .+.....+|.||+|||..
T Consensus 220 ------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred ------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235799999999986
No 406
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.027 Score=45.59 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 68999999999999999887 5999999998754
No 407
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.18 E-value=0.024 Score=44.91 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+...+.+.+.++|+++.. .+|.+++.-. .-++|.||.|+|-..
T Consensus 152 ~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~-----------~~~~DVivNCtGL~a 195 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQ-RRVESLEEVA-----------RPEYDVIVNCTGLGA 195 (342)
T ss_pred hhhHHHHHHHHhcCcEEEE-eeeccHHHhc-----------cCCCcEEEECCcccc
Confidence 4667899999999999975 4566554211 156899999999764
No 408
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.025 Score=45.66 Aligned_cols=33 Identities=39% Similarity=0.470 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||+|..|.+.|..|+ .|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999999999999999887 5999999998753
No 409
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.17 E-value=0.11 Score=44.55 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc------------------------------------CC-c---
Q 023975 121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL------------------------------------LE-F--- 160 (274)
Q Consensus 121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~------------------------------------~~-~--- 160 (274)
.++..+++|.+|+-.|..+. ..|.+++++.+.+.+ .+ .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~--~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELL--REGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CceEEECcchHHHHHHHHHH--HCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 45666788889998888888 457777777766543 00 0
Q ss_pred --CCh-hHHHHHHHHHHhCCc--EEEcCceeeeeccCC-CceeEECCCC----cEEeecEEEEcccCC
Q 023975 161 --IGP-KAGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP 218 (274)
Q Consensus 161 --~~~-~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~ 218 (274)
... .+.+.+...++..++ .+..++++..+.... +.+.|.+.+. ++..+|.||+|+|..
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 011 345556666666665 677888888888777 5777776443 367899999999965
No 410
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.16 E-value=0.021 Score=49.53 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 469999999999999998887 4999999998753
No 411
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.12 E-value=0.04 Score=40.51 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCC
Q 023975 12 KNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 12 ~~~~v~IIGaG~-aGl~~A~~L~-~g~~v~vie~~ 44 (274)
..++|+|||+|- +|..+|.+|. +|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 458999999995 7999998886 58899999986
No 412
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.11 E-value=0.026 Score=45.62 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 47999999999999999987 5999999998754
No 413
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.11 E-value=0.065 Score=47.19 Aligned_cols=66 Identities=12% Similarity=-0.103 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCC--cEEeecEEEEcccCCCCchhhccccc
Q 023975 163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL 229 (274)
Q Consensus 163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~ 229 (274)
..+...+.+.++++|+++..+++|++++.+++.+ .+++ .+| .++.|+.||+|+|... ..+....+.
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~~~g~ 199 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRIAEYAGL 199 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHHHHhcCC
Confidence 4567778888899999999999999998766643 3443 234 3799999999999875 444443343
No 414
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.08 E-value=0.029 Score=45.69 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=27.8
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+|+|||+|..|...|..|+ .|++|+++++.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 6999999999999999997 499999999843
No 415
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.08 E-value=0.031 Score=47.27 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
...|+|+|+|+.|+.+|..++ .|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 579999999999999999997 599999999864
No 416
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.05 E-value=0.034 Score=46.62 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+|+|||+|.+|+.+|..|+ .|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 467999999999999999997 499999999864
No 417
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.05 E-value=0.074 Score=46.17 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=63.2
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..+. ..+.+++++.+.+.+. + ..+..+.+...+.+++.|++++.++.+..-
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~--~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 217 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILA--RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD- 217 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-
Confidence 456777888999999999988 5688999998876532 1 123445556667788899999999877321
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPVG 220 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 220 (274)
+..++ ....+|.||+|||..+.
T Consensus 218 -------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 -------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred -------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998763
No 418
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.067 Score=40.75 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccc
Q 023975 161 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT 227 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~ 227 (274)
..+.+.+.+++..++.|.++++. .|.++........+.++.+ .+.||.||+|||....--.++..
T Consensus 68 ~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 68 TGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred ccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceeeeecCCC
Confidence 35678899999999999999875 4777777777777776554 69999999999987644444443
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.031 Score=45.73 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.5
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|.-|...|..+. .|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 57999999999999998876 6999999998764
No 420
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.97 E-value=0.033 Score=45.41 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=27.1
Q ss_pred cEEEEcCChHHHHHHHHhhc-CCcEEEEcC
Q 023975 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDP 43 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~~-g~~v~vie~ 43 (274)
+|+|||+|..|...|..|++ |++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 69999999999999999974 999999998
No 421
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.87 E-value=0.048 Score=44.41 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=28.3
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~ 46 (274)
++|.|||+|..|..+|+.|+ +|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 58999999999999999886 465 8999998554
No 422
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.87 E-value=0.041 Score=44.93 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=28.0
Q ss_pred cEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY 46 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~ 46 (274)
+|.|||+|..|.++|+.|. +| .++.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999986 46 58999998754
No 423
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.84 E-value=0.27 Score=46.89 Aligned_cols=99 Identities=17% Similarity=0.008 Sum_probs=63.3
Q ss_pred HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC-----------ChhHHHHHHHHHHhC-CcEEEcCceeeee
Q 023975 122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVNLD 189 (274)
Q Consensus 122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i 189 (274)
.+..+++|..|+..|..+. ..+.++.++.+.+.+.... ...+...+.+.+++. +++++.++.|..+
T Consensus 165 dVvIIGaGPAGLaAA~~aa--r~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 165 DVLVVGAGPAGLAAALAAA--RAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred CEEEECCCHHHHHHHHHHH--hCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 3556777999999999888 5788999998875542210 012334455556555 5999999998887
Q ss_pred ccCCCceeEE-----C----CC---C--cEEeecEEEEcccCCCCch
Q 023975 190 SVSEGSDTYL-----T----ST---G--DTINADCHFLCTGKPVGSD 222 (274)
Q Consensus 190 ~~~~~~~~v~-----~----~~---g--~~~~~d~vv~a~G~~~~~~ 222 (274)
...+....+. + .. . .++.+|.||+|||..+...
T Consensus 243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 5322111110 0 11 1 1689999999999877543
No 424
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.83 E-value=0.06 Score=44.19 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=30.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF 47 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~ 47 (274)
...+|+|||+|..|.++|+.++ +|+ +++|+|..+..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3469999999999999999886 574 89999987653
No 425
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.055 Score=46.74 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~ 45 (274)
.++|+|+|.|.+|.++|..|++|++|++.|...
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 468999999999999999998899999999653
No 426
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.046 Score=44.69 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 368999999999999998887 5999999998653
No 427
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.73 E-value=0.037 Score=44.78 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999999999999998886 5999999998764
No 428
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.71 E-value=0.05 Score=46.98 Aligned_cols=33 Identities=42% Similarity=0.538 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.+.++|+|+|.+|+++|..|+ .|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999997 599999999764
No 429
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.67 E-value=0.071 Score=43.64 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=29.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY 46 (274)
Q Consensus 11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~ 46 (274)
....+|+|||+|..|.++|+.|. ++. ++.|+|.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 34579999999999999999886 455 7999998654
No 430
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.67 E-value=0.12 Score=45.05 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=57.6
Q ss_pred HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC
Q 023975 122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 201 (274)
Q Consensus 122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~ 201 (274)
++..++.|.+|+++|..|. ..|.+|+++.+.+. .....+.+.+++.|+++..+..+.
T Consensus 18 ~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-------------- 74 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALL--ELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-------------- 74 (480)
T ss_pred EEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc--------------
Confidence 4455667889999988887 56888998876542 233455667888999998876442
Q ss_pred CCcEEeecEEEEcccCCCCchhhc
Q 023975 202 TGDTINADCHFLCTGKPVGSDWLK 225 (274)
Q Consensus 202 ~g~~~~~d~vv~a~G~~~~~~~~~ 225 (274)
....+|.||.++|..|+.+++.
T Consensus 75 --~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 --LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred --ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999887653
No 431
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.63 E-value=0.083 Score=45.62 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=57.7
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc----CC---h---hHHHHHHHHHHhCCcEEEcCceeeee
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----IG---P---KAGDKTRDWLISKKVDVKLGERVNLD 189 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~----~~---~---~~~~~~~~~~~~~gv~i~~~~~v~~i 189 (274)
..++..+++|++|+..|..+.. ..+.+++++.+.+.+... .. + .+...+.+.+...++++..|..+-.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~-~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLK-HERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-hcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 4568888999999999997653 348899999998876331 11 1 2333444445567888876554421
Q ss_pred ccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 190 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
.+..++= ...+|+||+|+|..+
T Consensus 117 -------Dvt~eeL-~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 117 -------DLKMEEL-RNHYNCVIFCCGASE 138 (506)
T ss_pred -------ccCHHHH-HhcCCEEEEEcCCCC
Confidence 0111111 237899999999875
No 432
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.079 Score=43.43 Aligned_cols=43 Identities=30% Similarity=0.464 Sum_probs=37.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR 55 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~ 55 (274)
.+||+|.|.|+.-...+..|+ .|.+|+.||+++..|.....++
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence 599999999999888888887 5999999999999987766554
No 433
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.55 E-value=0.04 Score=49.92 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=61.7
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..+. ..+.+++++.+.+.+. + .....+.+...+.+++.|+++..++.+. ..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La--~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d 269 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLL--RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD 269 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc
Confidence 456777888999999999998 5688999999876541 1 1233455566677888999999887542 10
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+. ...+|.||+|||..+
T Consensus 270 -------v~~~~~-~~~~DaVilAtGa~~ 290 (652)
T PRK12814 270 -------ITLEEL-QKEFDAVLLAVGAQK 290 (652)
T ss_pred -------cCHHHH-HhhcCEEEEEcCCCC
Confidence 111111 235999999999864
No 434
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.045 Score=44.07 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|..|.+.|..++ .|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 57999999999999998887 5999999997754
No 435
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.55 E-value=0.036 Score=39.19 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=25.9
Q ss_pred EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
++|+|+|+.+.+.+..++. |++|+++|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999988875 999999998754
No 436
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.065 Score=44.20 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||+|.-|...|..|. .|++|+++++.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 58999999999999999987 5999999999643
No 437
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.44 E-value=0.038 Score=44.13 Aligned_cols=32 Identities=47% Similarity=0.706 Sum_probs=28.7
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~ 44 (274)
.-+|+|||||.+|..+|+-+. .|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 358999999999999998776 59999999987
No 438
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=94.42 E-value=0.36 Score=40.56 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=29.0
Q ss_pred CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 177 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 177 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+..+..+++|.++. .+. +++.+|+++.||.||.|.|..+
T Consensus 100 ~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 100 PEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred cccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence 33366788888883 333 4447888999999999999765
No 439
>PLN02268 probable polyamine oxidase
Probab=94.41 E-value=0.11 Score=44.75 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=34.7
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~ 51 (274)
.+|+|||||++||+||+.|+ .|++|+|+|+++.+|+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 37999999999999999998 499999999999999654
No 440
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.40 E-value=0.06 Score=44.98 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=29.2
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~ 45 (274)
+++|+|||+|-.|..+|..|++ + .+|++.+|+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 3689999999999999999874 5 8999999984
No 441
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.40 E-value=0.061 Score=43.66 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999999999999998886 5999999998754
No 442
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.37 E-value=0.11 Score=49.15 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=60.6
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
..++..+++|+.|+..|..|+ ..+.+|+++.+.+.+.. ..+........+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LA--r~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLA--RAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHH--HCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence 356778888999999999998 56889999988764321 1123344444566777899998874211
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+...+.+...+|.||+|||..+
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWK 633 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCC
Confidence 1222333566999999999864
No 443
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.36 E-value=0.087 Score=43.97 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975 173 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 221 (274)
Q Consensus 173 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 221 (274)
....||.+..+..|..+..++ ..|.++||.+|.+|.+.+|||..|..
T Consensus 267 ~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 267 AVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred cccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCccc
Confidence 445689999999998886443 45788999999999999999998864
No 444
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.35 E-value=0.079 Score=45.74 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.++|+|+|.|.+|+++|..|+ +|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999999999999999997 6999999997654
No 445
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.35 E-value=0.052 Score=45.80 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (274)
+|.|||.|..|+..|..++.|++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence 69999999999999977777999999998754
No 446
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.29 E-value=0.077 Score=40.30 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPK 44 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~ 44 (274)
..+|+|||+|-.|..+|..|.+ |. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4799999999999999999985 88 69999975
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.27 E-value=0.063 Score=46.88 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=28.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~ 44 (274)
..+|+|+|.|.+|++++..|+ +|++|++.|..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999998886 59999999965
No 448
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.25 E-value=0.057 Score=44.42 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
++|.|||+|..|...|..|+ .|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 47999999999999999987 599999999864
No 449
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.23 E-value=0.066 Score=46.38 Aligned_cols=33 Identities=42% Similarity=0.522 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.++|+|+|.|.+|+++|..|+ .|++|++.|+.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 468999999999999999997 599999999765
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.14 E-value=0.078 Score=42.99 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+++|||.|.+|..+|..|+ .|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 579999999999999999997 499999999874
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.14 E-value=0.073 Score=44.92 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
....|+|+|.|+.|..+|..|+ .|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3579999999999999999998 599999998765
No 452
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.12 E-value=0.084 Score=37.28 Aligned_cols=33 Identities=48% Similarity=0.672 Sum_probs=28.0
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~ 45 (274)
+.+|+|||+|-.|..+|..|.+ |. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999985 77 799999754
No 453
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.09 E-value=0.094 Score=39.87 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.+.++|+|.|-.|..+|..|. .|++|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999999999999997 599999998763
No 454
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.07 E-value=0.06 Score=45.91 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||.|..|+..|..|+ +|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 68999999999999999997 5999999998654
No 455
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.96 E-value=0.065 Score=44.17 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=28.0
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+|.|||+|..|.+.|..|+ .|++|+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 6999999999999999997 499999999864
No 456
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.96 E-value=0.076 Score=38.51 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=26.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+.++|+|-|..|-.+|..|+ .|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3579999999999999999998 599999999865
No 457
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.94 E-value=0.097 Score=42.76 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~ 46 (274)
++|+|||+|..|.+.|..+. .|. ++.++|..+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 68999999999999998886 454 9999998654
No 458
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.88 E-value=0.1 Score=43.80 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=33.6
Q ss_pred cccCCCCCCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 5 RQQQSEGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 5 ~~~~~~~~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+...++...++|+|.|| |..|..++..|. +|++|+.+++..
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 33445556789999998 999999999996 699999999753
No 459
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.84 E-value=0.073 Score=36.36 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=26.6
Q ss_pred EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 16 v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
|+|+|.|..|...+..|.+ +.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 6899999999999999985 569999999764
No 460
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.82 E-value=0.069 Score=46.37 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..+++|+|+|+.|+.++..++ .|.+|+++|.+..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 369999999999999999887 5999999998753
No 461
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.81 E-value=0.072 Score=40.54 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..+.|.|||||.-|...|...+ .|++|.++|+++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 4579999999999999997765 6999999999875
No 462
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.78 E-value=0.1 Score=42.62 Aligned_cols=33 Identities=42% Similarity=0.513 Sum_probs=28.3
Q ss_pred cEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCc
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYF 47 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~~ 47 (274)
+|+|||+|.+|.++|+.|. +| .+++++|+.+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 7999999999999999986 46 589999987643
No 463
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.77 E-value=0.07 Score=45.51 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=28.9
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
+|.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 6999999999999999997 5999999998754
No 464
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.77 E-value=0.089 Score=42.44 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.++++|||.|..|.++|..|+ .|.+|++++|+..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999999999999997 5999999998753
No 465
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.69 E-value=0.094 Score=38.41 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=27.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+++|.+||-|..|...|.+|. .|++|.++|+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999997 599999999875
No 466
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.64 E-value=0.13 Score=36.66 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=28.0
Q ss_pred CcEEEEcC-ChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023975 14 KRVVVIGG-GVAGSLVAKSLQ-F--SADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGa-G~aGl~~A~~L~-~--g~~v~vie~~~~ 46 (274)
.+|.|||+ |..|.+.|+.|. . ..++.|+|..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 47999999 999999999986 2 567999998754
No 467
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.58 E-value=0.11 Score=44.17 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
..+.|+|+|.|..|..+|..|+ .|.+|+++|..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 3578999999999999999997 5999999997653
No 468
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.1 Score=45.34 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.++|+|+|.|-+|.++|..|. +|++|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 468999999999999999997 599999999654
No 469
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.52 E-value=0.12 Score=40.16 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=29.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~---~v~vie~~~ 45 (274)
...+++|+|+|-+|..+|..|. .|. ++.+++|..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 3479999999999999999997 476 499999974
No 470
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.12 Score=44.95 Aligned_cols=34 Identities=38% Similarity=0.576 Sum_probs=29.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.+++|+|+|.|-+|+++|..|. +|++|++.|+..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 4568999999999999999887 599999999753
No 471
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.35 E-value=0.13 Score=42.51 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.1
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~ 45 (274)
..+|+|||+|-.|..+|..|.+ |. +++|+|+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4789999999999999999985 87 899999864
No 472
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.31 E-value=0.11 Score=44.46 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=31.3
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (274)
+++|+|+|-|-+|+++|..|.+ |++|++.|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 5799999999999999999974 9999999976654
No 473
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.29 E-value=0.15 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||+|..|.+.|..|. .|++|+++++...
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57999999999999999997 5999999998753
No 474
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.27 E-value=0.12 Score=45.14 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=29.1
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
++|.|||+|.-|...|..|. .|++|+++|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 47999999999999998886 5999999998754
No 475
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.25 E-value=0.14 Score=41.20 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=28.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~ 45 (274)
.++++|||+|-+|-++|+.|. .|. +++|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 468999999999999999997 576 799999874
No 476
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.016 Score=46.81 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=29.1
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~ 47 (274)
-+.+|||||..+|.||-.|+ .|++|+|.=|+-.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L 233 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL 233 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec
Confidence 47899999999999999998 59999998876433
No 477
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.21 E-value=0.12 Score=44.74 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.8
Q ss_pred CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~ 45 (274)
++|+|||.|..|+..|..|+ + |++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999997 3 58899999765
No 478
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.18 E-value=0.13 Score=45.02 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
-.+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 368999999999999998886 5999999998765
No 479
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.16 E-value=0.16 Score=40.44 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=29.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~~ 46 (274)
...+|+|||+|-.|..+|..|++ | -+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 35799999999999999999985 7 58999997643
No 480
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.12 E-value=0.16 Score=39.89 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
..+++|+|+|+.+...|..++. |++|+|+|..+.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3699999999999999998875 999999997765
No 481
>PLN02494 adenosylhomocysteinase
Probab=93.08 E-value=0.15 Score=43.77 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.+.++|+|.|+.|..+|..++ .|.+|+++|+.+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999997 599999999865
No 482
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.08 E-value=0.17 Score=41.50 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=29.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~ 46 (274)
+..+|+|||+|..|.++|+.|. .| .++.|+|..+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 3469999999999999998886 46 68999998654
No 483
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.01 E-value=0.18 Score=38.39 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=29.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975 12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~ 45 (274)
...+|+|||+|-.|..+|..|.+ |. +++++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35799999999999999999974 76 899999753
No 484
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.00 E-value=0.2 Score=41.01 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=28.4
Q ss_pred CCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~ 46 (274)
+.+|+|||+|..|.++|+.|. . ..++.|+|.++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 469999999999999999886 3 457999998654
No 485
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.00 E-value=0.26 Score=44.67 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=61.4
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..|. ..|.+++++.+.+.+.. ..+..+.+...+.+++.|+++++++.+..-
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~--~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 386 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILA--RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD- 386 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHH--HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-
Confidence 345556667999999999998 56889999998875321 133445555667788899999999876310
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+.+.+ ....+|.||+|+|..+
T Consensus 387 -------~~~~~-l~~~~DaV~latGa~~ 407 (639)
T PRK12809 387 -------ITFSD-LTSEYDAVFIGVGTYG 407 (639)
T ss_pred -------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1346899999999754
No 486
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.95 E-value=0.2 Score=38.59 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=27.9
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
..+|+|||||..++.=+..|. .|.+|+|+-+.-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 468999999999988777775 599999998753
No 487
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.84 E-value=0.16 Score=44.02 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCcEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023975 12 KNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 12 ~~~~v~IIGaG~aGl~-~A~~L~-~g~~v~vie~~~~ 46 (274)
..++|+|||.|-+|++ +|..|+ +|++|++.|....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3468999999999999 588887 5999999997653
No 488
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.77 E-value=0.12 Score=42.12 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.9
Q ss_pred CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (274)
++|+|+|+|..|...|+.|++ |.+|+++-|.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 379999999999999999974 889999988765
No 489
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.75 E-value=0.13 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
.+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 57999999999999998886 5999999998764
No 490
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.72 E-value=0.17 Score=39.15 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.9
Q ss_pred cEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 15 ~v~IIG-aG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+|.||| +|..|.+.|..|. .|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 7999999998886 589999998764
No 491
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=0.44 Score=41.47 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHHHh-CCcEEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEcccCC
Q 023975 166 GDKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP 218 (274)
Q Consensus 166 ~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~ 218 (274)
...+++.++. .++.+..++ |.++..+++ ...|++.+|..+.|+.||++||..
T Consensus 103 ~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 103 RRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 3445555554 477777654 556655444 467999999999999999999953
No 492
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.64 E-value=0.13 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.3
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
+|.|||.|..|.+.|..|. +|++|+++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 6999999999999999997 5999999998643
No 493
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.63 E-value=0.34 Score=44.12 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=60.6
Q ss_pred HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975 120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 190 (274)
Q Consensus 120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 190 (274)
.+++..+++|..|+..|..|. ..+.+++++.+.+.+. + .....+.....+.+++.|+++..++.+..-
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~--~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 403 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLA--RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD- 403 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-
Confidence 345666777999999999998 5788999998876532 1 123344555566778889999999876310
Q ss_pred cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975 191 VSEGSDTYLTSTGDTINADCHFLCTGKPV 219 (274)
Q Consensus 191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 219 (274)
+...+ ....+|.||+|+|...
T Consensus 404 -------i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 -------ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred -------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1236999999999753
No 494
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.58 E-value=0.18 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
.++|+|+|.|.+|+++|..|+ +|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999998887 599999999754
No 495
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.51 E-value=0.18 Score=44.96 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~ 46 (274)
+.+++|+|+|..|-..|..|+ +|++++++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 468999999999999999997 5999999998764
No 496
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.47 E-value=0.19 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=27.5
Q ss_pred CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023975 14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE 45 (274)
Q Consensus 14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~ 45 (274)
.+|.|||+|..|.+.|..|. .| .+|+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 58999999999999999887 46 4899999864
No 497
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.47 E-value=0.24 Score=37.42 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=28.7
Q ss_pred CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
...+++|+|| |..|..+|..|. .|++|+++.|+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3478999997 999999998886 589999998863
No 498
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.1 Score=43.20 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=36.2
Q ss_pred CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR 55 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~ 55 (274)
.|||+|+|.|..=...+..|+ .|.+|+.+||+++.|+....+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 399999999998776667777 5999999999999997776655
No 499
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.43 E-value=0.21 Score=41.36 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=29.0
Q ss_pred CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975 13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE 45 (274)
Q Consensus 13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~ 45 (274)
..+|+|||+|-.|..+|..|.+ |. +++++|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4799999999999999999974 77 899999853
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.40 E-value=0.16 Score=43.93 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=28.3
Q ss_pred cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (274)
Q Consensus 15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~ 45 (274)
+|+|+|+|..|...|..|. +|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 7999999999999999997 599999999854
Done!