BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023976
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 15/240 (6%)
Query: 1 MVITLKEELIMNSFKTIDGRGASVHIA-GGPCITVQYVTNIIIHGINIHDCKRG--GNAN 57
M I LK L + KTIDGRGA VH+ GGPC+ ++ V+++I+H ++IH C G+
Sbjct: 76 MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVL 135
Query: 58 VRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNN 113
V +S P H DGD +++ ++ W+DH SLS+C+DGLID GST ITISNN
Sbjct: 136 VSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNN 190
Query: 114 YMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM 173
+ +H+KVMLLGH DT+ DK+M+VT+AFN FG QRMPR R+G HV NN+Y W +
Sbjct: 191 HFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNI 250
Query: 174 YALGGSASPTINSQGNRFVAPNDRFNKEVTKYE--DAPESEWKNWNWRSEGDLMVNGAFF 231
YA+GGS++PTI S+GN F AP++ + KEVTK ++P S NW WRS D +NGA+F
Sbjct: 251 YAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANWVWRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 1 MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRD 60
+V K E+ + S KTI G + + GG + ++ N+II I+ + D
Sbjct: 56 IVFEPKREIKVLSDKTIVGINDAKIVGGG--LVIKDAQNVIIRNIHFEGFY------MED 107
Query: 61 SPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 120
P + D D +++ H+W+DH + N NDG +D S IT+S N H+K
Sbjct: 108 DPRGKKY----DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDK 163
Query: 121 VMLLGHSDTFTQDKNMQ---VTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH------- 170
V L+G SD ++ Q VT N+F + L+QRMPR R G HV NN Y+
Sbjct: 164 VSLVGSSDKEDPEQAGQAYKVTYHHNYF-KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVS 222
Query: 171 ---WEMYALGGSASPTINSQGNRFV 192
+ +Y + + ++ +GN F+
Sbjct: 223 GNVFPIYGVASAMGAKVHVEGNYFM 247
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 32/166 (19%)
Query: 60 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DG 97
D HY GW ++ D ++I G+H VW+DH ++S+ N DG
Sbjct: 128 DVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDG 185
Query: 98 LIDAIHGSTAITISNNYMTHHNKVMLLGHSDT-FTQDKNMQVTIAFNHFGEGLVQRMPRC 156
+D GS +TISN+ + H+K ML+GHSD+ +QDK FN+ + +R PR
Sbjct: 186 ALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRV 245
Query: 157 RHGYFHVVNN-------DYTHWEMYALGGSASPTINSQGNRFVAPN 195
R+G H NN D + Y+ G S ++ S+GN F N
Sbjct: 246 RYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIAN 291
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 32/166 (19%)
Query: 60 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DG 97
D HY GW ++ D ++I G+H VW+DH ++S+ N DG
Sbjct: 128 DVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDG 185
Query: 98 LIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPRC 156
+D GS +TISN+ + H+K ML+GH+DT + QDK FN+ + +R PR
Sbjct: 186 ALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRV 245
Query: 157 RHGYFHVVNN-------DYTHWEMYALGGSASPTINSQGNRFVAPN 195
R+G H NN D + Y+ G S ++ S+GN F N
Sbjct: 246 RYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIAN 291
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 26/146 (17%)
Query: 74 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 116
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 117 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY------- 168
H+K + G SD+ T D +++T+ N + + +VQR PR R G HV NN Y
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 169 THWEMYALGGSASPTINSQGNRFVAP 194
++ YA G S I +Q N P
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVP 349
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 48/210 (22%)
Query: 16 TIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHY--GWRTI--- 70
+I G G I GG + ++ V N+II I ++P Y W
Sbjct: 135 SIIGVGKDAKIKGGGFL-IKNVDNVIIRNIEF------------EAPLDYFPEWDPTDGT 181
Query: 71 -----SDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAI 108
S+ D +SI G SH+W+DH + ++ + DG +D + S I
Sbjct: 182 LGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFI 241
Query: 109 TISNNYMTHHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 167
TIS N T+H+KV L+G SD+ D +++VT+ N++ + + QR+PR R G H+ NN
Sbjct: 242 TISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQVHIYNNY 300
Query: 168 YTHWEM------YALGGSASPTINSQGNRF 191
Y + YA G I +Q N F
Sbjct: 301 YEFSNLADYDFQYAWGVGVFSQIYAQNNYF 330
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 26/146 (17%)
Query: 74 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 116
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 117 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY------- 168
H+K + G SD+ T D +++T+ N + + +VQ+ PR R G HV NN Y
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 169 THWEMYALGGSASPTINSQGNRFVAP 194
++ YA G S I +Q N P
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVP 349
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 26/146 (17%)
Query: 74 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 116
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 117 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY------- 168
H+ + G SD+ T D +++T+ N + + +VQR PR R G HV NN Y
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSS 302
Query: 169 THWEMYALGGSASPTINSQGNRFVAP 194
++ YA G S I +Q N P
Sbjct: 303 SYPFSYAWGIGKSSKIYAQNNVIDVP 328
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 26/146 (17%)
Query: 74 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 116
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 117 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY------- 168
H+K + G SD+ T D +++T+ N + + +VQ PR R G HV NN Y
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNNYYEGSTSSS 302
Query: 169 THWEMYALGGSASPTINSQGNRFVAP 194
++ YA G S I +Q N P
Sbjct: 303 SYPFSYAWGIGKSSKIYAQNNVIDVP 328
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 40/219 (18%)
Query: 6 KEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHY 65
+ ++ + S TI G G++ G + ++ V N+I+ + I D HY
Sbjct: 73 RSQISIPSNTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIE--------TPVDVAPHY 123
Query: 66 ----GWRTISDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHG 104
GW ++ D I ++VWVDH ++S+ + DG +D G
Sbjct: 124 ESGDGWN--AEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKG 181
Query: 105 STAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAF-NHFGEGLVQRMPRCRHGYFHV 163
S +TIS + H+K +L+GHSD+ + ++ + F N+ + + +R PR R G H
Sbjct: 182 SDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHA 241
Query: 164 VNNDY-------THWEMYALGGSASPTINSQGNRFVAPN 195
NN Y + +Y+ G S +I S+ N F N
Sbjct: 242 YNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSN 280
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 72 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 115
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 116 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 166
++ KV L G+SD+ T++ + T N F E + R+P R G H+ NN
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNN 221
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 72 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 115
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 116 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 166
++ KV L G+SD+ T++ + T N F E + R+P R G H+ NN
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNN 221
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 72 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 115
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 116 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 166
++ KV L G+SD+ T++ + T N F E + R+P R G H+ NN
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNN 221
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 29 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGS-HVWVD 87
G I + NIII ++IH + G +G + + S +VW+D
Sbjct: 94 GIGIRLSNAHNIIIQNVSIHHVREG------------------EGTAIEVTDDSKNVWID 135
Query: 88 HCSL---------SNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSD--TFTQDKNM 136
H S+ DGL+D + IT+S N +H K ML+GH+D + DK
Sbjct: 136 HNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDK-- 193
Query: 137 QVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF 191
+T N+F L R+P R+ H+ NN + A+ + + N F
Sbjct: 194 -ITYHHNYF-NNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYF 246
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 72 DGDGVSIFGGSHVWVDHCSLSNCN-------------DGLIDAIHGSTAITISNNYMTHH 118
DGD + + +VWVDH L N + +D S +T+S NY+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 119 NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH 170
KV L G S + D +T N++ + + R+P R G H NN YT+
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNARLPLQRGGLVHAYNNLYTN 236
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 72 DGDGVSIFGGSHVWVDHCSLSNCN-------------DGLIDAIHGSTAITISNNYMTHH 118
DGD + + +VWVDH L N + +D S +T+S NY+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 119 NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH 170
KV L G S + D +T N++ + + ++P R G H NN YT+
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNAKLPLQRGGLVHAYNNLYTN 236
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 9 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWR 68
+ +NS K+I G+G I G V N+II I + D Y W
Sbjct: 104 ITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDIN-----------PKYVW- 151
Query: 69 TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA---ITISNNYMTHHNKVMLL- 124
GD +++ VW+DH + + G + G++A +TIS + + +
Sbjct: 152 ---GGDAITVDDSDLVWIDHVTTARI--GRQHIVLGTSADNRVTISYSLIDGRSDYSATC 206
Query: 125 -GHS--DTFTQDKNMQVTIAFNHFGEGLVQRMPRCR-HGYFHVVNNDYTHWEMYALGGSA 180
GH + N VT+ N+F L RMP+ + + H VNN + +++ +A
Sbjct: 207 NGHHYWGVYLDGSNDMVTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGT 265
Query: 181 SPTINSQGNRF 191
+ ++GN F
Sbjct: 266 GGYVLAEGNVF 276
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 17 IDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG-WRTISDGD 74
I G ++ I G GP ++ + ++I++G + G +R PS + + +
Sbjct: 151 IKGLMTNLIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFCPSCLNVFNNVQENK 210
Query: 75 GVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSD 128
SIF + D +L+ ++ LI +HG I ISN +T + K + HSD
Sbjct: 211 DTSIFSRRAYFAD-PALTLMHE-LIHVLHGLYGIKISNLPITPNTKEFFMQHSD 262
>pdb|1PLG|L Chain L, Evidence For The Extended Helical Nature Of Polysaccharide
Epitopes. The 2.8 Angstroms Resolution Structure And
Thermodynamics Of Ligand Binding Of An Antigen Binding
Fragment Specific For Alpha-(2->8)- Polysialic Acid
Length = 215
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y +W + G S P I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFS 68
>pdb|1M71|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
pdb|1PZ5|A Chain A, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 215
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLLHSDGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLLHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1T2Q|L Chain L, The Crystal Structure Of An Nna7 Fab That Recognizes An
N-Type Blood Group Antigen
Length = 217
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSSGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|2D03|L Chain L, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 217
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSSGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1CFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|2BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|1BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
Length = 113
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 156 CRHGYFHVVNN--DYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
CR V NN +Y HW + G S I NRF DRF+
Sbjct: 23 CRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFS 68
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 217
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I + NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYTVSNRFSGVPDRFS 68
>pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|2MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
pdb|1MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
Length = 219
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQALVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 9 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWR 68
+ + S K++ G G+S I G V NIII I + D Y W
Sbjct: 104 ITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDIN-----------PKYVWG 152
Query: 69 TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA---ITISNNYMT--------- 116
GD +++ VW+DH + + G + G++A ++++NNY+
Sbjct: 153 ----GDAITLDDCDLVWIDHVTTARI--GRQHYVLGTSADNRVSLTNNYIDGVSDYSATC 206
Query: 117 ---HHNKVMLLGHSDTFTQDKN 135
H+ + L G +D T N
Sbjct: 207 DGYHYWAIYLDGDADLVTMKGN 228
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1DLF|L Chain L, High Resolution Crystal Structure Of The Fv Fragment From
An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 5.25
pdb|2DLF|L Chain L, High Resolution Crystal Structure Of The Fv Fragment From
An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 6.75
pdb|1WZ1|L Chain L, Crystal Structure Of The Fv Fragment Complexed With
Dansyl- Lysine
Length = 113
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|3IF1|A Chain A, Crystal Structure Of 237mab In Complex With A Galnac
pdb|3IF1|C Chain C, Crystal Structure Of 237mab In Complex With A Galnac
Length = 215
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 23 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 67
>pdb|3IET|A Chain A, Crystal Structure Of 237mab With Antigen
pdb|3IET|C Chain C, Crystal Structure Of 237mab With Antigen
Length = 217
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1CBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
pdb|1NBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
Length = 219
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1T66|L Chain L, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|C Chain C, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 219
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1MRC|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 219
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|3UO1|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 218
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S + I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPNLLIYKVSNRFSGVPDRFS 68
>pdb|2HKF|L Chain L, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|L Chain L, Crystal Structure Of The Fab M75
Length = 219
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S + I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPNLLIYKVSNRFSGVPDRFS 68
>pdb|3O2V|L Chain L, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|L Chain L, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 219
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKFLIYKVSNRFSGVPDRFS 68
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N+Y HW + G + I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNNYLHWYLQKSGQAPKLLIYKVSNRFSGVPDRFS 68
>pdb|2O5X|L Chain L, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 219
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKFLIYKVSNRFSGVPDRFS 68
>pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQTLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 42/199 (21%)
Query: 9 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWR 68
+ + S K++ G G+S I G V NIII I + D Y W
Sbjct: 104 ITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDIN-----------PKYVWG 152
Query: 69 TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA---ITISNNYMT--------- 116
GD +++ VW+DH + + G + G++A ++++NNY+
Sbjct: 153 ----GDAITLDDCDLVWIDHVTTARI--GRQHYVLGTSADNRVSLTNNYIDGVSDYSATC 206
Query: 117 ---HHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR-HGYFHVVNNDYTHWE 172
H+ + L G +D T N + + G R P+ + + H VNN +
Sbjct: 207 DGYHYWGIYLDGDADLVTMKGN------YIYHTSG---RSPKVQDNTLLHCVNNYFYDIS 257
Query: 173 MYALGGSASPTINSQGNRF 191
+A + ++GN F
Sbjct: 258 GHAFEIGEGGYVLAEGNVF 276
>pdb|1C1E|L Chain L, Crystal Structure Of A Diels-alderase Catalytic Antibody
1e9 In Complex With Its Hapten
Length = 216
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRF 198
R H N Y HW + G S I NRF DRF
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPKFLIYKVSNRFSGVPDRF 67
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S + NRF DRF+
Sbjct: 24 RSSQSLIHSNGNTYLHWYLQKPGQSPKLLMYKVSNRFYGVPDRFS 68
>pdb|1CGS|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|2CGR|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|1YNK|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeteners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
pdb|1YNL|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeterners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RPSQSLVHSNGNTYLHWYLQKPGQSPKLLIYRVSNRFSGVPDRFS 68
>pdb|2P17|A Chain A, Crystal Structure Of Gk1651 From Geobacillus Kaustophilus
Length = 277
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 21 GASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHY-GWRTISDGDGVSIF 79
GA++ + G V+ T I+ + G V+D P HY G+ I +G GV F
Sbjct: 144 GATIRVFSGSSKGVKAPTKNIVPVTXVEXIVEPGTTVVQDLPGHYNGFLYILEGSGV--F 201
Query: 80 GGSHV 84
G ++
Sbjct: 202 GADNI 206
>pdb|1NAK|L Chain L, Igg1 Fab Fragment (83.1) Complex With 16-Residue Peptide
(Residues 304-321 Of Hiv-1 Gp120 (Mn Isolate))
pdb|1NAK|M Chain M, Igg1 Fab Fragment (83.1) Complex With 16-Residue Peptide
(Residues 304-321 Of Hiv-1 Gp120 (Mn Isolate))
Length = 219
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 155 RCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFN 199
R H N Y HW + G S I NRF DRF+
Sbjct: 24 RSSQSLGHSSGNTYLHWFLQKPGQSPKLLIYKVSNRFSGVPDRFS 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,946,049
Number of Sequences: 62578
Number of extensions: 380384
Number of successful extensions: 812
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 49
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)