Query 023976
Match_columns 274
No_of_seqs 186 out of 788
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00544 Pec_lyase_C: Pectate 100.0 3.9E-56 8.5E-61 392.3 11.9 182 2-191 10-200 (200)
2 COG3866 PelB Pectate lyase [Ca 100.0 2.6E-54 5.6E-59 394.7 22.1 230 7-267 95-343 (345)
3 smart00656 Amb_all Amb_all dom 100.0 7.2E-54 1.6E-58 375.3 21.6 176 2-194 3-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.7 4.6E-06 9.9E-11 78.6 21.1 215 6-236 24-285 (314)
5 PF13229 Beta_helix: Right han 98.3 1.4E-05 3E-10 65.0 11.2 133 31-195 2-138 (158)
6 PF14592 Chondroitinas_B: Chon 98.1 6.3E-05 1.4E-09 73.5 14.4 176 15-195 44-258 (425)
7 PLN02218 polygalacturonase ADP 98.0 0.00013 2.8E-09 71.8 13.1 82 72-157 241-323 (431)
8 PLN03003 Probable polygalactur 97.9 0.0002 4.3E-09 70.9 13.5 83 71-157 186-269 (456)
9 PLN02188 polygalacturonase/gly 97.8 0.00029 6.2E-09 68.9 13.0 82 72-157 204-286 (404)
10 PLN02155 polygalacturonase 97.8 0.00014 3.1E-09 70.7 10.8 83 71-157 193-276 (394)
11 PLN02793 Probable polygalactur 97.8 0.00021 4.5E-09 70.6 11.4 116 32-157 180-308 (443)
12 TIGR03805 beta_helix_1 paralle 97.7 0.0023 4.9E-08 60.5 16.9 146 29-177 77-248 (314)
13 PF00295 Glyco_hydro_28: Glyco 97.7 0.00032 6.9E-09 66.3 11.0 83 71-157 140-223 (326)
14 PLN03010 polygalacturonase 97.7 0.0014 2.9E-08 64.3 15.2 97 71-172 205-306 (409)
15 PF13229 Beta_helix: Right han 97.7 0.00052 1.1E-08 55.7 10.5 131 29-191 23-158 (158)
16 PF05048 NosD: Periplasmic cop 97.5 0.012 2.6E-07 52.4 17.1 62 74-145 80-141 (236)
17 PF01696 Adeno_E1B_55K: Adenov 97.3 0.0083 1.8E-07 58.2 14.8 156 4-196 76-242 (386)
18 PLN02218 polygalacturonase ADP 97.3 0.0063 1.4E-07 60.0 14.2 135 32-197 195-348 (431)
19 PF05048 NosD: Periplasmic cop 97.2 0.022 4.8E-07 50.7 15.7 130 30-193 36-167 (236)
20 PF00295 Glyco_hydro_28: Glyco 97.1 0.0073 1.6E-07 57.1 12.1 108 9-146 62-184 (326)
21 PLN03003 Probable polygalactur 97.0 0.0079 1.7E-07 59.7 12.0 86 31-146 140-230 (456)
22 TIGR03808 RR_plus_rpt_1 twin-a 97.0 0.047 1E-06 54.0 17.0 73 7-94 81-156 (455)
23 PLN02155 polygalacturonase 96.9 0.011 2.4E-07 57.6 11.9 109 32-170 148-268 (394)
24 PLN03010 polygalacturonase 96.9 0.016 3.6E-07 56.8 12.5 138 32-198 160-314 (409)
25 PLN02188 polygalacturonase/gly 96.8 0.012 2.6E-07 57.5 11.4 135 32-198 158-314 (404)
26 PF12708 Pectate_lyase_3: Pect 96.6 0.044 9.6E-07 47.3 12.3 156 4-195 44-221 (225)
27 TIGR03808 RR_plus_rpt_1 twin-a 96.5 0.06 1.3E-06 53.3 13.8 148 30-193 136-332 (455)
28 PLN02793 Probable polygalactur 96.4 0.046 9.9E-07 54.2 12.0 63 75-146 202-269 (443)
29 smart00656 Amb_all Amb_all dom 96.2 0.15 3.3E-06 44.7 13.0 115 74-195 32-167 (190)
30 PF12708 Pectate_lyase_3: Pect 96.2 0.024 5.2E-07 48.9 7.9 105 31-150 114-221 (225)
31 PLN02480 Probable pectinestera 95.7 0.14 3.1E-06 49.1 11.6 109 2-127 79-206 (343)
32 COG5434 PGU1 Endopygalactoruna 95.0 0.086 1.9E-06 53.5 8.0 101 33-157 265-376 (542)
33 PLN02682 pectinesterase family 93.8 1.7 3.6E-05 42.3 13.6 109 2-127 101-237 (369)
34 PLN02432 putative pectinestera 93.5 0.79 1.7E-05 43.2 10.5 103 2-127 42-162 (293)
35 PLN03043 Probable pectinestera 93.4 1.7 3.7E-05 44.3 13.4 97 2-116 257-392 (538)
36 PLN02773 pectinesterase 93.2 0.87 1.9E-05 43.4 10.4 96 2-118 36-163 (317)
37 PF07602 DUF1565: Protein of u 93.2 3 6.5E-05 38.4 13.5 91 8-117 47-162 (246)
38 PLN02416 probable pectinestera 93.2 0.76 1.6E-05 46.8 10.5 94 2-116 261-376 (541)
39 PLN02488 probable pectinestera 92.5 1.2 2.6E-05 45.0 10.7 81 2-100 228-330 (509)
40 PLN02995 Probable pectinestera 92.5 1 2.2E-05 45.8 10.4 95 2-117 256-372 (539)
41 PLN02217 probable pectinestera 92.3 3.1 6.6E-05 43.5 13.7 126 2-146 281-450 (670)
42 PF00544 Pec_lyase_C: Pectate 92.1 2.6 5.6E-05 37.2 11.3 116 29-168 75-200 (200)
43 PLN02170 probable pectinestera 92.1 1.5 3.3E-05 44.5 10.9 82 2-101 257-360 (529)
44 PLN02176 putative pectinestera 92.0 2.1 4.5E-05 41.2 11.3 97 7-118 80-189 (340)
45 PLN02197 pectinesterase 92.0 3.6 7.8E-05 42.4 13.6 81 2-100 306-410 (588)
46 PLN02713 Probable pectinestera 92.0 1.4 3E-05 45.2 10.6 81 2-100 284-386 (566)
47 PLN02708 Probable pectinestera 91.9 1.3 2.9E-05 45.2 10.4 81 2-100 273-376 (553)
48 PLN02990 Probable pectinestera 91.9 4 8.7E-05 41.9 13.9 81 2-100 290-393 (572)
49 PF14592 Chondroitinas_B: Chon 91.8 0.5 1.1E-05 46.6 6.9 60 137-197 246-325 (425)
50 PLN02201 probable pectinestera 91.7 1.5 3.3E-05 44.4 10.5 95 2-117 237-353 (520)
51 PLN02484 probable pectinestera 91.7 3.6 7.9E-05 42.4 13.3 81 2-100 303-406 (587)
52 PLN02304 probable pectinestera 91.6 2 4.2E-05 42.0 10.7 118 2-145 106-245 (379)
53 PLN02933 Probable pectinestera 91.4 1.8 3.8E-05 44.1 10.5 95 2-117 249-365 (530)
54 PLN02634 probable pectinestera 91.0 2.6 5.6E-05 40.9 10.8 101 2-118 87-215 (359)
55 PLN02916 pectinesterase family 91.0 2 4.2E-05 43.5 10.3 95 2-117 221-337 (502)
56 PLN02506 putative pectinestera 90.9 2.2 4.8E-05 43.4 10.7 95 2-117 263-379 (537)
57 PLN02745 Putative pectinestera 90.8 2.2 4.7E-05 44.0 10.7 81 2-100 316-418 (596)
58 PLN02314 pectinesterase 90.7 4.4 9.5E-05 41.8 12.7 81 2-100 309-411 (586)
59 COG5434 PGU1 Endopygalactoruna 90.4 1.5 3.2E-05 44.7 8.9 92 31-145 289-395 (542)
60 PLN02313 Pectinesterase/pectin 90.4 4.8 0.0001 41.5 12.7 97 2-116 306-441 (587)
61 PLN02671 pectinesterase 90.4 3.1 6.8E-05 40.3 10.8 108 2-127 90-227 (359)
62 PLN02665 pectinesterase family 90.0 20 0.00043 35.0 16.5 87 2-101 99-206 (366)
63 PLN02468 putative pectinestera 89.8 2.5 5.5E-05 43.3 10.2 81 2-100 289-391 (565)
64 PLN02301 pectinesterase/pectin 89.5 2.5 5.3E-05 43.2 9.8 81 2-100 267-369 (548)
65 PLN02497 probable pectinestera 88.6 5.2 0.00011 38.4 10.7 103 2-118 63-183 (331)
66 COG3866 PelB Pectate lyase [Ca 88.0 3.7 8.1E-05 39.1 9.1 118 73-193 116-250 (345)
67 PF08480 Disaggr_assoc: Disagg 85.6 21 0.00045 31.8 11.9 87 106-194 2-109 (198)
68 PF01095 Pectinesterase: Pecti 83.8 6.4 0.00014 37.0 8.6 100 7-127 41-156 (298)
69 PRK10531 acyl-CoA thioesterase 83.5 16 0.00034 36.3 11.5 52 36-100 204-256 (422)
70 COG3420 NosD Nitrous oxidase a 79.6 49 0.0011 32.2 12.8 73 29-117 120-192 (408)
71 PF03211 Pectate_lyase: Pectat 77.9 16 0.00034 33.1 8.6 108 2-120 15-143 (215)
72 PF12541 DUF3737: Protein of u 69.3 39 0.00085 31.6 9.1 109 34-170 94-224 (277)
73 PRK10123 wcaM putative colanic 53.4 27 0.00059 33.4 5.2 55 34-99 264-318 (464)
74 PLN02698 Probable pectinestera 52.6 75 0.0016 32.2 8.5 53 30-100 263-316 (497)
75 PF08480 Disaggr_assoc: Disagg 52.3 1.6E+02 0.0035 26.3 9.5 73 80-153 32-113 (198)
76 TIGR03804 para_beta_helix para 47.1 37 0.00079 22.0 3.7 39 76-116 2-40 (44)
77 COG3420 NosD Nitrous oxidase a 43.5 3.3E+02 0.0071 26.7 12.4 39 9-49 47-88 (408)
78 PF12541 DUF3737: Protein of u 33.7 1E+02 0.0022 28.9 5.6 62 35-125 16-77 (277)
79 PRK03174 sspH acid-soluble spo 31.2 53 0.0011 23.8 2.7 17 74-90 14-31 (59)
80 PRK01625 sspH acid-soluble spo 28.4 63 0.0014 23.4 2.7 17 74-90 14-31 (59)
81 smart00710 PbH1 Parallel beta- 25.0 82 0.0018 16.9 2.3 15 83-97 3-17 (26)
82 TIGR02861 SASP_H small acid-so 24.4 53 0.0011 23.7 1.7 17 74-90 14-31 (58)
83 PF07602 DUF1565: Protein of u 24.0 4.2E+02 0.009 24.4 7.9 21 29-50 114-134 (246)
84 PF03718 Glyco_hydro_49: Glyco 23.4 2.9E+02 0.0064 28.6 7.2 79 71-155 371-452 (582)
85 PF06355 Aegerolysin: Aegeroly 23.0 3.7E+02 0.0081 22.2 6.7 71 37-113 14-88 (131)
86 PF01696 Adeno_E1B_55K: Adenov 21.3 3.5E+02 0.0075 26.7 7.1 78 104-193 119-199 (386)
87 PF08141 SspH: Small acid-solu 20.4 1.1E+02 0.0025 21.9 2.7 18 73-90 13-31 (58)
No 1
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=3.9e-56 Score=392.35 Aligned_cols=182 Identities=41% Similarity=0.643 Sum_probs=153.3
Q ss_pred eEEecceEEcCCCceEEeecCceEEecCCcEEEe-eeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeC
Q 023976 2 VITLKEELIMNSFKTIDGRGASVHIAGGPCITVQ-YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG 80 (274)
Q Consensus 2 ~I~L~~~L~v~snkTI~G~G~~~~I~~G~~l~i~-~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~ 80 (274)
+|+++.+|.|+|||||+|+|++++|. |.++.+. +++|||||||+|+++. ++..|...+.....++|+|++++
T Consensus 10 ~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~Dai~i~~ 82 (200)
T PF00544_consen 10 TIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDGDAISIDN 82 (200)
T ss_dssp CCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS--SEEEES
T ss_pred EEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCCCeEEEEe
Confidence 56788999999999999999999999 6788886 8999999999999841 00011111111236899999999
Q ss_pred CceEEEeceeccCC--------CCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCC
Q 023976 81 GSHVWVDHCSLSNC--------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQR 152 (274)
Q Consensus 81 s~nVWIDHcs~s~~--------~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R 152 (274)
++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|....+..++|||||||| +++.+|
T Consensus 83 ~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f-~~~~~R 161 (200)
T PF00544_consen 83 SSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF-ANTNSR 161 (200)
T ss_dssp TEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE-EEEEE-
T ss_pred cccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE-CchhhC
Confidence 99999999999999 999999999999999999999999999999999887777679999999999 799999
Q ss_pred CccccCCeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEE
Q 023976 153 MPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF 191 (274)
Q Consensus 153 ~Pr~r~G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F 191 (274)
+||+|+|++|+|||||+++..||+++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 2
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-54 Score=394.73 Aligned_cols=230 Identities=30% Similarity=0.380 Sum_probs=179.6
Q ss_pred ceEEcCCCceEEeecCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEE-eCCceEE
Q 023976 7 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVW 85 (274)
Q Consensus 7 ~~L~v~snkTI~G~G~~~~I~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i-~~s~nVW 85 (274)
.+|++.|||||.|.|++++|. |.+|.|+.+.|||||||+|++...++ ...|+|+| .+++|||
T Consensus 95 ~~iki~sNkTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIW 157 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIW 157 (345)
T ss_pred EEEeeccccEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEE
Confidence 578889999999999999999 77999999999999999999865321 12699999 6799999
Q ss_pred EeceeccC--------CCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcc-cCCCcceEEEEceEecCCCCCCCccc
Q 023976 86 VDHCSLSN--------CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRC 156 (274)
Q Consensus 86 IDHcs~s~--------~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~-~~d~~~~vT~hhN~f~~~~~~R~Pr~ 156 (274)
||||+|+. ..||++|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+
T Consensus 158 IDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pri 236 (345)
T COG3866 158 IDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRI 236 (345)
T ss_pred EEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCce
Confidence 99999999 7999999999999999999999999999999999984 457899999999999 8999999999
Q ss_pred cCCeeEEEcCeEeCCc--ceEEeeCCCCeEEEEcCEEecCCCCCccceeeeccCCCCCcCCceEeeccceEEeceEEecC
Q 023976 157 RHGYFHVVNNDYTHWE--MYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPS 234 (274)
Q Consensus 157 r~G~~Hv~NN~~~~~~--~yaig~~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~~s~gd~~~nG~~~~~s 234 (274)
|||++|||||||+... .||++.+..++|++|+|||+....+...--+++. + ..|.- -.|++|..+
T Consensus 237 RfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~------GY~~~-----d~gsy~~~s 303 (345)
T COG3866 237 RFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S------GYANQ-----DSGSYLNSS 303 (345)
T ss_pred EeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc--c------ceEEe-----ccCceeccc
Confidence 9999999999999654 4555555559999999999996444321111111 0 01110 235555444
Q ss_pred CCCC------CCCCCCCCccccCCC-chHhhhhccccCCC
Q 023976 235 GAGA------SSSYAKASSLGARPS-SLISSITAGAGSLN 267 (274)
Q Consensus 235 g~~~------~~~y~~~~~~~~~~~-~~v~~~~~~aG~~~ 267 (274)
+... ...++...++.+.|. ...+.||..||+++
T Consensus 304 ~~~~~~~~G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 304 KSMSVRAGGVTWNPSSYYSYTVDPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred CCcccccCCccCCCCCCcccccCChHHhhhhhhcccccee
Confidence 4321 122333344566655 56777889999765
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=7.2e-54 Score=375.30 Aligned_cols=176 Identities=58% Similarity=0.873 Sum_probs=162.2
Q ss_pred eEEec--ceEEcCCCceEEeecCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEe
Q 023976 2 VITLK--EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF 79 (274)
Q Consensus 2 ~I~L~--~~L~v~snkTI~G~G~~~~I~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~ 79 (274)
+|... .+|.|+|||||+|+|++++|. |.+|.+++++|||||||+|+++.+. + ..++|+|+++
T Consensus 3 ~~~~~~~~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~ 66 (190)
T smart00656 3 TITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISID 66 (190)
T ss_pred EEEecccceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEe
Confidence 45554 489999999999999999999 7899998899999999999986543 1 1478999999
Q ss_pred CCceEEEeceeccCC---------CCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCC
Q 023976 80 GGSHVWVDHCSLSNC---------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 80 ~s~nVWIDHcs~s~~---------~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~ 150 (274)
++++||||||+|+|. .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+||||| .++.
T Consensus 67 ~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~ 145 (190)
T smart00656 67 GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLR 145 (190)
T ss_pred CCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEE-cCcc
Confidence 999999999999998 899999999999999999999999999999999987766689999999999 6899
Q ss_pred CCCccccCCeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecC
Q 023976 151 QRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAP 194 (274)
Q Consensus 151 ~R~Pr~r~G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~ 194 (274)
+|+||+|+|++|+|||||++|..||++.+.++++++|+|||++.
T Consensus 146 ~R~P~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 146 QRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred cCCCcccCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 99999999999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.68 E-value=4.6e-06 Score=78.65 Aligned_cols=215 Identities=14% Similarity=0.163 Sum_probs=119.2
Q ss_pred cceEEcC-CCceEEeecCc-eEEec------CCcEEEeeeceEEEEceEEEecccCCCccccCCCC------CCCCc---
Q 023976 6 KEELIMN-SFKTIDGRGAS-VHIAG------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS------HYGWR--- 68 (274)
Q Consensus 6 ~~~L~v~-snkTI~G~G~~-~~I~~------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~------~~~~~--- 68 (274)
.+.|.|. +++||.|.|.. ..|.+ +..|.+ .++||-|++|++++... .+-+++.+.. ...|.
T Consensus 24 ~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~-~GI~v~~s~~i~I~n~~i~~~~~~ 101 (314)
T TIGR03805 24 DRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG-DGVKVKGSDGIIIRRLRVEWTGGP 101 (314)
T ss_pred ceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-CeEEEeCCCCEEEEeeEEEeccCc
Confidence 3567776 78899888753 34431 233444 56777777777765311 0001111100 00000
Q ss_pred -ccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecC
Q 023976 69 -TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGE 147 (274)
Q Consensus 69 -~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~ 147 (274)
.....++|.+..++++-|.+|.++...|--|-+. .+++++|.+|.+.+-..+..+-.+. .+.+.+|.+ .
T Consensus 102 ~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~-~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~-~ 171 (314)
T TIGR03805 102 KSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVG-QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIA-T 171 (314)
T ss_pred cccCCcceEEEeccCCEEEECCEEECCCcccEEEC-CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEE-e
Confidence 0134678888888888888888888777444554 5788888888887655555554443 466777777 3
Q ss_pred CCCCCC-----cc---ccCCeeEEEcCeEeCC----------------cceEEeeCCCCeEEEEcCEEecCCCCCcccee
Q 023976 148 GLVQRM-----PR---CRHGYFHVVNNDYTHW----------------EMYALGGSASPTINSQGNRFVAPNDRFNKEVT 203 (274)
Q Consensus 148 ~~~~R~-----Pr---~r~G~~Hv~NN~~~~~----------------~~yaig~~~~~~i~~egN~F~~~~~~~~k~vt 203 (274)
++..=. |. +--..+.+++|.+.+- ...++-......+.+++|.|.....+..--+.
T Consensus 172 ~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 172 NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 332111 11 1123567777776531 11133233447788999999876554322111
Q ss_pred eecc-----CCCCCcCCceEeeccceEEeceEEecCCC
Q 023976 204 KYED-----APESEWKNWNWRSEGDLMVNGAFFTPSGA 236 (274)
Q Consensus 204 ~r~~-----~~~~~~~~~~~~s~gd~~~nG~~~~~sg~ 236 (274)
.... +.+..|..+ ..++.+-.|.|...|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~ 285 (314)
T TIGR03805 252 YHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGT 285 (314)
T ss_pred cccccCCCCCcCCCccCC----CcceEEEccEeecCCC
Confidence 1111 112223322 4777788888887775
No 5
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.26 E-value=1.4e-05 Score=65.03 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=86.3
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEE
Q 023976 31 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 110 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTV 110 (274)
+|.+.+..++.|++.+|++ ...++|.+.++..+.|+.|+|.+ ...-+.+. +..++++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~---------------------~~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~-~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISN---------------------NGGDGIHVSGSSNITIENCTISN-GGYGIYVS-GGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEES---------------------SSSECEEE-SSCESEEES-EEES-STTSEEEE-CCES-EE
T ss_pred EEEEECCcCeEEeeeEEEe---------------------CCCeEEEEEcCCCeEEECeEEEC-CCcEEEEe-cCCCeEE
Confidence 5778888999999999985 35789999999999999999999 44455665 3589999
Q ss_pred EcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCcccc--CCeeEEEcCeEeCCcceEEeeCC--CCeEEE
Q 023976 111 SNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR--HGYFHVVNNDYTHWEMYALGGSA--SPTINS 186 (274)
Q Consensus 111 S~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r--~G~~Hv~NN~~~~~~~yaig~~~--~~~i~~ 186 (274)
++|.|.+......+-.+. .+++.+|.| .++..-.=.++ ...+.+.||.+.+-..+++.... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i-~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRI-ENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EE-ECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEE-EcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999887444443222 789999999 45544333333 23678899999876555555444 458999
Q ss_pred EcCEEecCC
Q 023976 187 QGNRFVAPN 195 (274)
Q Consensus 187 egN~F~~~~ 195 (274)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998754
No 6
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.13 E-value=6.3e-05 Score=73.54 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=75.9
Q ss_pred ceEEee-cCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCCCCC---CCC--c-c----------cCCCCcEE
Q 023976 15 KTIDGR-GASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH---YGW--R-T----------ISDGDGVS 77 (274)
Q Consensus 15 kTI~G~-G~~~~I~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~---~~~--~-~----------~~~~Dai~ 77 (274)
+||..+ +..+.|.|...|.|. .+.++|.+|.|++..+.....|.-.... +.. | + ..+.+..+
T Consensus 44 Itl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~w 122 (425)
T PF14592_consen 44 ITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNW 122 (425)
T ss_dssp EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE-
T ss_pred EEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceE
Confidence 566666 345788866677775 6999999999998654322222110000 000 0 0 01111223
Q ss_pred E----eCCceEEEeceeccCC--CCCeEEee-------eCCceEEEEcceec-------ccCeEEEecCCCcccCCCcce
Q 023976 78 I----FGGSHVWVDHCSLSNC--NDGLIDAI-------HGSTAITISNNYMT-------HHNKVMLLGHSDTFTQDKNMQ 137 (274)
Q Consensus 78 i----~~s~nVWIDHcs~s~~--~Dglidv~-------~~s~~VTVS~~~f~-------~h~k~~LiG~sd~~~~d~~~~ 137 (274)
+ --++|-=||||+|..- ..-+|-+. .-..+-+|.+|+|. +...++-||.|.....+ -+
T Consensus 123 v~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~ 200 (425)
T PF14592_consen 123 VTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SN 200 (425)
T ss_dssp --TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B------
T ss_pred EEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cc
Confidence 3 1244555799999973 22233333 13457899999998 45567788877643322 38
Q ss_pred EEEEceEecCCCCCCCcc--ccCCeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCC
Q 023976 138 VTIAFNHFGEGLVQRMPR--CRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPN 195 (274)
Q Consensus 138 vT~hhN~f~~~~~~R~Pr--~r~G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~ 195 (274)
.++.+||| ++|..-.=- ++-+.--++||.|+...+ ++-.+-|-.-.+++|+|....
T Consensus 201 t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng 258 (425)
T PF14592_consen 201 TTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNG 258 (425)
T ss_dssp -EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-S
T ss_pred eeeecchh-hhcCCceeEEEeecCCceEeccEEEeccc-eEEEecCCCceEeccEEecCC
Confidence 99999999 788876433 334556677777765321 222333334445666666543
No 7
>PLN02218 polygalacturonase ADPG
Probab=97.96 E-value=0.00013 Score=71.82 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCccc-CCCcceEEEEceEecCCCC
Q 023976 72 DGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 72 ~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~-~d~~~~vT~hhN~f~~~~~ 150 (274)
..|+|.+.+++||.|.+|.++.+ |.+|.++.++++|+|++|.+.. ..++-||+--.+. .+.--.|++.++.| .+ .
T Consensus 241 NTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t 316 (431)
T PLN02218 241 NTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-T 316 (431)
T ss_pred CCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ec-C
Confidence 67999999999999999999877 7799999999999999999953 2345688654322 22345799999999 44 3
Q ss_pred CCCcccc
Q 023976 151 QRMPRCR 157 (274)
Q Consensus 151 ~R~Pr~r 157 (274)
.+.=|++
T Consensus 317 ~nGvRIK 323 (431)
T PLN02218 317 DNGVRIK 323 (431)
T ss_pred CcceEEe
Confidence 4555665
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.91 E-value=0.0002 Score=70.89 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=63.5
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCccc-CCCcceEEEEceEecCCC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~-~d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+..++||+|.+|.++.+ |.+|.++.++++|+|++|.+... .++-||+--++. .+.--.|++.++.| .++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~NV~v~n~~~-~~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVENVCVQNCNF-RGT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEEEEEEeeEE-ECC
Confidence 367999999999999999988765 77899999999999999998642 346677654332 23345799999999 554
Q ss_pred CCCCcccc
Q 023976 150 VQRMPRCR 157 (274)
Q Consensus 150 ~~R~Pr~r 157 (274)
.+.=|++
T Consensus 263 -~nGvRIK 269 (456)
T PLN03003 263 -MNGARIK 269 (456)
T ss_pred -CcEEEEE
Confidence 4555665
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.83 E-value=0.00029 Score=68.85 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=62.0
Q ss_pred CCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCccc-CCCcceEEEEceEecCCCC
Q 023976 72 DGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 72 ~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~-~d~~~~vT~hhN~f~~~~~ 150 (274)
..|+|.+..+++|+|.+|.++.+-| +|.++.++++|+|+++.+.. ..++-+|+--++. ...--.|++.++.| .++
T Consensus 204 NtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~-~~t- 279 (404)
T PLN02188 204 NTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTF-TGT- 279 (404)
T ss_pred CCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEE-ECC-
Confidence 6799999999999999999988765 88999999999999999863 2356678733221 22345799999999 443
Q ss_pred CCCcccc
Q 023976 151 QRMPRCR 157 (274)
Q Consensus 151 ~R~Pr~r 157 (274)
+|.=|++
T Consensus 280 ~~GiriK 286 (404)
T PLN02188 280 TNGIRIK 286 (404)
T ss_pred CcEEEEE
Confidence 4555553
No 10
>PLN02155 polygalacturonase
Probab=97.82 E-value=0.00014 Score=70.74 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCccc-CCCcceEEEEceEecCCC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~-~d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+..++||+|.+|.++.+-| +|.++.++++|+|++|.+.. ..++-||+--.+. ..+-..|++.++.| .++
T Consensus 193 ~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~t 269 (394)
T PLN02155 193 PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TGS 269 (394)
T ss_pred CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eCC
Confidence 35699999999999999999987755 88999899999999998874 2356788753221 23345899999999 453
Q ss_pred CCCCcccc
Q 023976 150 VQRMPRCR 157 (274)
Q Consensus 150 ~~R~Pr~r 157 (274)
.|.=|++
T Consensus 270 -~~GirIK 276 (394)
T PLN02155 270 -QNGVRIK 276 (394)
T ss_pred -CcEEEEE
Confidence 4555653
No 11
>PLN02793 Probable polygalacturonase
Probab=97.79 E-value=0.00021 Score=70.62 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=76.9
Q ss_pred EEEeeeceEEEEceEEEecccCCCccc------------cCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeE
Q 023976 32 ITVQYVTNIIIHGINIHDCKRGGNANV------------RDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLI 99 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~i------------~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dgli 99 (274)
|.+.+++||.|++|++++.. .+--.+ .+.|. .....|+|.+..++||+|.+|.++. .|.+|
T Consensus 180 i~f~~~~nv~v~gitl~nSp-~~~i~~~~~~nv~i~~l~I~~p~-----~spNTDGIdi~~s~nV~I~n~~I~~-gDDcI 252 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQ-QMHIAFTNCRRVTISGLKVIAPA-----TSPNTDGIHISASRGVVIKDSIVRT-GDDCI 252 (443)
T ss_pred EEEEeeccEEEECeEEEcCC-CeEEEEEccCcEEEEEEEEECCC-----CCCCCCcEeeeccceEEEEeCEEeC-CCCeE
Confidence 55667777777777776531 000000 01111 0136799999999999999998875 58889
Q ss_pred EeeeCCceEEEEcceecccCeEEEecCCCcc-cCCCcceEEEEceEecCCCCCCCcccc
Q 023976 100 DAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCR 157 (274)
Q Consensus 100 dv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~-~~d~~~~vT~hhN~f~~~~~~R~Pr~r 157 (274)
.++.++++|+|++|.+..- .+.-||+--.+ ....-..|++.++.| .++ .+.=|++
T Consensus 253 aik~~s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~-~~t-~~GirIK 308 (443)
T PLN02793 253 SIVGNSSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFL-SNT-DNGVRIK 308 (443)
T ss_pred EecCCcCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEE-eCC-CceEEEE
Confidence 9988999999999998642 24567764322 112345799999999 443 4555664
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.72 E-value=0.0023 Score=60.47 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=88.8
Q ss_pred CCcEEEeeeceEEEEceEEEeccc-----CCCcc-ccCCCCCC--CCccc-CCCCcEEEeCCceEEEeceeccCCCCCeE
Q 023976 29 GPCITVQYVTNIIIHGINIHDCKR-----GGNAN-VRDSPSHY--GWRTI-SDGDGVSIFGGSHVWVDHCSLSNCNDGLI 99 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~-----~~~~~-i~~~~~~~--~~~~~-~~~Dai~i~~s~nVWIDHcs~s~~~Dgli 99 (274)
+.+|.+.+++|++||++++..... +..|. +..+..-. ...-. ...++|.+..++++.|-+|.+.....|..
T Consensus 77 ~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 77 GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEccCcceEE
Confidence 456778889999999999973210 00000 11111000 00001 22358999999999999999998877654
Q ss_pred EeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCC-----------cccc------CCeeE
Q 023976 100 DAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRM-----------PRCR------HGYFH 162 (274)
Q Consensus 100 dv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~-----------Pr~r------~G~~H 162 (274)
=. .|.++.|.+|.|.+-.-+.++-..+.-..-...++++++|.|. +....+ |.-+ .-.+.
T Consensus 157 i~--~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~ 233 (314)
T TIGR03805 157 IE--NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAGSIVASVPAGTGVVVMANRDVE 233 (314)
T ss_pred EE--ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccCCceecCCCCcEEEEEcccceE
Confidence 43 4789999999999766666663322211111238999999994 554332 1111 01579
Q ss_pred EEcCeEeCCcceEEe
Q 023976 163 VVNNDYTHWEMYALG 177 (274)
Q Consensus 163 v~NN~~~~~~~yaig 177 (274)
++||.+.+-...++.
T Consensus 234 I~~N~i~~n~~~~i~ 248 (314)
T TIGR03805 234 IFGNVISNNDTANVL 248 (314)
T ss_pred EECCEEeCCcceeEE
Confidence 999999875444443
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.71 E-value=0.00032 Score=66.34 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccC-CCcceEEEEceEecCCC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQ-DKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~-d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+.+++||.|++|.+..+ |-+|.++.++.+|+|++|.|.. ..++-+|+.-.... ..--.|+|.++.| .+
T Consensus 140 ~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~~- 215 (326)
T PF00295_consen 140 PNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-IN- 215 (326)
T ss_dssp TS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-ES-
T ss_pred CCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-ec-
Confidence 357999999999999999999766 8889998888899999999974 23356665332211 1234799999999 45
Q ss_pred CCCCcccc
Q 023976 150 VQRMPRCR 157 (274)
Q Consensus 150 ~~R~Pr~r 157 (274)
..|.-|++
T Consensus 216 t~~gi~iK 223 (326)
T PF00295_consen 216 TDNGIRIK 223 (326)
T ss_dssp ESEEEEEE
T ss_pred cceEEEEE
Confidence 35666664
No 14
>PLN03010 polygalacturonase
Probab=97.69 E-value=0.0014 Score=64.28 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceec-ccCeEEEecCCCcc-cCCCcceEEEEceEecCC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT-HHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEG 148 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~-~h~k~~LiG~sd~~-~~d~~~~vT~hhN~f~~~ 148 (274)
...|+|-+..+++|+|..|.+..+ |-+|.++.++++++|.++... .| ++-||+--.. ..+.--.|++.++.| .+
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~gH--GisIGS~g~~~~~~~V~nV~v~n~~i-~~ 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGPGH--GISVGSLGADGANAKVSDVHVTHCTF-NQ 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeECcC--CEEEccCCCCCCCCeeEEEEEEeeEE-eC
Confidence 357999999999999999988776 889999988887777765554 34 3556664332 122345799999999 44
Q ss_pred CCCCCcccc--C-CeeEEEcCeEeCCc
Q 023976 149 LVQRMPRCR--H-GYFHVVNNDYTHWE 172 (274)
Q Consensus 149 ~~~R~Pr~r--~-G~~Hv~NN~~~~~~ 172 (274)
.++.=|++ . |.-.+-|=.|++..
T Consensus 281 -t~~GirIKt~~G~~G~v~nItf~nI~ 306 (409)
T PLN03010 281 -TTNGARIKTWQGGQGYARNISFENIT 306 (409)
T ss_pred -CCcceEEEEecCCCEEEEEeEEEeEE
Confidence 34555654 2 23344454555543
No 15
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.68 E-value=0.00052 Score=55.69 Aligned_cols=131 Identities=23% Similarity=0.246 Sum_probs=82.0
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceE
Q 023976 29 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 108 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~V 108 (274)
+.+|.+....++.|+|-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 456788777888999999984 357788888899999999999988 555665 78899
Q ss_pred EEEcceecccCe-EEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC-C--eeEEEcCeEeCCcceEEeeCCCCe-
Q 023976 109 TISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-G--YFHVVNNDYTHWEMYALGGSASPT- 183 (274)
Q Consensus 109 TVS~~~f~~h~k-~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~-G--~~Hv~NN~~~~~~~yaig~~~~~~- 183 (274)
+|.+|.|.+... ++.+.. ....+++.+|.| .+.....=.+.. . .+-+.+|.+++-..+++....+..
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~-~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTI-HNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EE-ECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEE-EeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999997765 444432 022689999999 444422222322 2 566788888877778887666655
Q ss_pred EEEEcCEE
Q 023976 184 INSQGNRF 191 (274)
Q Consensus 184 i~~egN~F 191 (274)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 88888876
No 16
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.46 E-value=0.012 Score=52.39 Aligned_cols=62 Identities=29% Similarity=0.352 Sum_probs=32.7
Q ss_pred CcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEe
Q 023976 74 DGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHF 145 (274)
Q Consensus 74 Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f 145 (274)
++|.+..+.+..|..+.|+....|. -+. .+...||+.|.|.+...++.+-.+. +.++.+|.|
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i 141 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGI-YLY-GSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTI 141 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceE-EEe-eCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEE
Confidence 5555555555566666666655533 332 3445566666665555544443332 455556666
No 17
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.30 E-value=0.0083 Score=58.20 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=115.9
Q ss_pred EecceEEcCCCceEEeecCceEEec--CCcEE---------EeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCC
Q 023976 4 TLKEELIMNSFKTIDGRGASVHIAG--GPCIT---------VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISD 72 (274)
Q Consensus 4 ~L~~~L~v~snkTI~G~G~~~~I~~--G~~l~---------i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (274)
++++++.|++--+|+|+||-+.|.+ +.+|. |.+-.+|.+.|++|... ..
T Consensus 76 ~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~--------------------~~ 135 (386)
T PF01696_consen 76 VIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR--------------------DT 135 (386)
T ss_pred EEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC--------------------Cc
Confidence 4678999999999999999988863 33344 34678999999999741 12
Q ss_pred CCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCC
Q 023976 73 GDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQR 152 (274)
Q Consensus 73 ~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R 152 (274)
.-++-+...+++.|.-|+|....-=+++.. ....|.-|.|..-+|++. +.+ +.++++.+|.| +.+.==
T Consensus 136 ~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~~-------~~~lsVk~C~F-ekC~ig 203 (386)
T PF01696_consen 136 FSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SRG-------KSKLSVKKCVF-EKCVIG 203 (386)
T ss_pred cceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cCC-------cceEEeeheee-eheEEE
Confidence 456778889999999999999988888876 367899999998888753 322 34889999999 655321
Q ss_pred CccccCCeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCCC
Q 023976 153 MPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPND 196 (274)
Q Consensus 153 ~Pr~r~G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~~ 196 (274)
. +--|..++.+|.+.+-.-..+ .+.+-.+.+|.|..+.+
T Consensus 204 i--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 204 I--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred E--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 1 335789999999987543222 23345678999987655
No 18
>PLN02218 polygalacturonase ADPG
Probab=97.29 E-value=0.0063 Score=60.01 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=88.1
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccC-----CCCCeEEeeeCCc
Q 023976 32 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~-----~~Dglidv~~~s~ 106 (274)
|.+.+++|+.|++|+|++. ..=.|.+..++||.|++.++.. -.|| ||+. .++
T Consensus 195 i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi~-ss~ 251 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHIT-NTQ 251 (431)
T ss_pred EEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eeec-ccc
Confidence 5678999999999999963 2236888999999999999875 3555 5776 589
Q ss_pred eEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCC------CCCccc-cCCeeEEEcCeEeCCcceEEe--
Q 023976 107 AITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV------QRMPRC-RHGYFHVVNNDYTHWEMYALG-- 177 (274)
Q Consensus 107 ~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~------~R~Pr~-r~G~~Hv~NN~~~~~~~yaig-- 177 (274)
+|+|++|.|...+-+.-|.+.. ..|++.++.+...+. .+.+.- ..-.+++-|+.+.+. .+++.
T Consensus 252 nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t-~nGvRIK 323 (431)
T PLN02218 252 NIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGT-DNGVRIK 323 (431)
T ss_pred eEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecC-CcceEEe
Confidence 9999999999888877776543 268888888742221 000100 001456666666543 12331
Q ss_pred -----eCCCCeEEEEcCEEecCCCC
Q 023976 178 -----GSASPTINSQGNRFVAPNDR 197 (274)
Q Consensus 178 -----~~~~~~i~~egN~F~~~~~~ 197 (274)
++.-..|.+|+...+....|
T Consensus 324 T~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 324 TYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ecCCCCeEEEEEEEEeEEEEccccc
Confidence 12234556666666665554
No 19
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.20 E-value=0.022 Score=50.65 Aligned_cols=130 Identities=22% Similarity=0.186 Sum_probs=90.6
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEE
Q 023976 30 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 109 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VT 109 (274)
.++.+..+.++.|++.+|++ ...+|.+..++++-|.-|.++....|. .+. .+.+.|
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l~-~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGI-YLM-GSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCE-EEE-cCCCcE
Confidence 34556677777777777763 246788888888888888888888664 444 344459
Q ss_pred EEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC-CeeEEEcCeEeCCcceEEe-eCCCCeEEEE
Q 023976 110 ISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDYTHWEMYALG-GSASPTINSQ 187 (274)
Q Consensus 110 VS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~-G~~Hv~NN~~~~~~~yaig-~~~~~~i~~e 187 (274)
|++|.|.+...+.++-.+. ..++..|.| . .....-.+.. ....+.+|.+.+-..|++. ........+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i-~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTI-S-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEE-e-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999998776666655443 478889998 4 3444444443 4778889998876667887 5556667788
Q ss_pred cCEEec
Q 023976 188 GNRFVA 193 (274)
Q Consensus 188 gN~F~~ 193 (274)
+|+|.+
T Consensus 162 ~N~f~N 167 (236)
T PF05048_consen 162 NNNFNN 167 (236)
T ss_pred CCCccC
Confidence 999933
No 20
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.10 E-value=0.0073 Score=57.14 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=74.7
Q ss_pred EEcCCCceEEeecCceEE-ec---------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEE
Q 023976 9 LIMNSFKTIDGRGASVHI-AG---------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI 78 (274)
Q Consensus 9 L~v~snkTI~G~G~~~~I-~~---------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i 78 (274)
+.+...=||+|+|..-.- .+ -..|.+.+++|+.|++|++++.. .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEE
Confidence 444444589999862000 00 12367889999999999999631 125788
Q ss_pred eCCceEEEeceeccC-----CCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEec
Q 023976 79 FGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 79 ~~s~nVWIDHcs~s~-----~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~ 146 (274)
..++||+|++.++.. -.||. |+. ++++|+|.+|.+...+-+.-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~~-~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DID-SSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EEE-SEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EEE-eeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999864 35664 776 68999999999998888777765532 6888888883
No 21
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.03 E-value=0.0079 Score=59.71 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=67.7
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccC-----CCCCeEEeeeCC
Q 023976 31 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGS 105 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~-----~~Dglidv~~~s 105 (274)
.|.+.+++||.|++|++++. ..=.|.+.++++|.|++.++.. -.|| ||+. .+
T Consensus 140 ~l~f~~~~nv~I~gitl~NS---------------------p~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-IDi~-~S 196 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDS---------------------PMAHIHISECNYVTISSLRINAPESSPNTDG-IDVG-AS 196 (456)
T ss_pred EEEEEecCCcEEeCeEEecC---------------------CcEEEEEeccccEEEEEEEEeCCCCCCCCCc-Eeec-Cc
Confidence 35778999999999999962 2235788899999999999876 3565 5876 68
Q ss_pred ceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEec
Q 023976 106 TAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 106 ~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~ 146 (274)
++|+|.+|.+...+.+.-+.+..+ .|++-++.++
T Consensus 197 ~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~ 230 (456)
T PLN03003 197 SNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCG 230 (456)
T ss_pred ceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEE
Confidence 999999999999888877765532 5777777763
No 22
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.01 E-value=0.047 Score=54.03 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=50.5
Q ss_pred ceEEcCCCceEEeecCce--EEecCCcEE-EeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCce
Q 023976 7 EELIMNSFKTIDGRGASV--HIAGGPCIT-VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSH 83 (274)
Q Consensus 7 ~~L~v~snkTI~G~G~~~--~I~~G~~l~-i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~n 83 (274)
.+|.+.++.||.|..... .|.++..+. -..++||-|++|+|++- +. .+. ...-+|.+.++++
T Consensus 81 G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G~---------dl~----~rdAgI~v~~a~~ 145 (455)
T TIGR03808 81 GPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--GI---------PLP----QRRGLIHCQGGRD 145 (455)
T ss_pred ccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--CC---------ccc----CCCCEEEEccCCc
Confidence 578999999999994432 366544444 35799999999999852 10 111 1223678888888
Q ss_pred EEEeceeccCC
Q 023976 84 VWVDHCSLSNC 94 (274)
Q Consensus 84 VWIDHcs~s~~ 94 (274)
+=|.+|++...
T Consensus 146 v~Iedn~L~gs 156 (455)
T TIGR03808 146 VRITDCEITGS 156 (455)
T ss_pred eEEEeeEEEcC
Confidence 88888888776
No 23
>PLN02155 polygalacturonase
Probab=96.93 E-value=0.011 Score=57.65 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCC-----CCCeEEeeeCCc
Q 023976 32 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~-----~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|++++. ..=.|.+.++++|.|++.++... .|| ||+. .++
T Consensus 148 i~~~~~~nv~i~gitl~nS---------------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-idi~-~s~ 204 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNS---------------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FHVQ-FST 204 (394)
T ss_pred eeEEEeeeEEEECeEEEcC---------------------CCeEEEEECeeeEEEEEEEEECCCCCCCCCc-cccc-cce
Confidence 6788999999999999963 12357888999999999999653 465 4775 589
Q ss_pred eEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCC------CCCc-cccCCeeEEEcCeEeC
Q 023976 107 AITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV------QRMP-RCRHGYFHVVNNDYTH 170 (274)
Q Consensus 107 ~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~------~R~P-r~r~G~~Hv~NN~~~~ 170 (274)
+|+|++|.|...+-...+++..+ .|++.++.+...+. .+.| .-..-.+.+.|+.+.+
T Consensus 205 nV~I~~~~I~~gDDcIaik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 205 GVTFTGSTVQTGDDCVAIGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred eEEEEeeEEecCCceEEcCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 99999999998888888876532 67777777632111 1112 1111256777888765
No 24
>PLN03010 polygalacturonase
Probab=96.86 E-value=0.016 Score=56.77 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=85.9
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccC-----CCCCeEEeeeCCc
Q 023976 32 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~-----~~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|++++. ..=.|.+.++++|.|++.++.. -.|| ||+. .++
T Consensus 160 l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iDi~-~s~ 216 (409)
T PLN03010 160 LHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDG-IDIS-YST 216 (409)
T ss_pred EEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCc-eeee-ccc
Confidence 6788999999999999963 1235788899999999999865 3565 4776 589
Q ss_pred eEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCC----CCCCCcc-ccCCeeEEEcCeEeCCcceEEe----
Q 023976 107 AITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEG----LVQRMPR-CRHGYFHVVNNDYTHWEMYALG---- 177 (274)
Q Consensus 107 ~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~----~~~R~Pr-~r~G~~Hv~NN~~~~~~~yaig---- 177 (274)
+|+|++|.+...+.+.-+.+... ...|+.-.+..+++ ...+... .-.-.+++.|+.+.+- .+++.
T Consensus 217 nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t-~~GirIKt~ 290 (409)
T PLN03010 217 NINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQT-TNGARIKTW 290 (409)
T ss_pred eEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC-CcceEEEEe
Confidence 99999999999988888866432 23444444443211 0001000 0012567778877653 12222
Q ss_pred -e--CCCCeEEEEcCEEecCCCCC
Q 023976 178 -G--SASPTINSQGNRFVAPNDRF 198 (274)
Q Consensus 178 -~--~~~~~i~~egN~F~~~~~~~ 198 (274)
+ +.-..|.+|+-.++....|.
T Consensus 291 ~G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 291 QGGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred cCCCEEEEEeEEEeEEEecCCccE
Confidence 1 11234556666666655553
No 25
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.83 E-value=0.012 Score=57.55 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=88.1
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCC-----CCCeEEeeeCCc
Q 023976 32 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~-----~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|+|++. ..=.|.+..+++|.|++.++... .|| ||+. .++
T Consensus 158 i~f~~~~nv~i~gitl~nS---------------------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDG-idi~-~s~ 214 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNS---------------------KFFHIALVECRNFKGSGLKISAPSDSPNTDG-IHIE-RSS 214 (404)
T ss_pred EEEEeeeeEEEeCeEEEcC---------------------CCeEEEEEccccEEEEEEEEeCCCCCCCCCc-Eeee-Ccc
Confidence 5678899999999999963 22357888999999999998763 555 4776 689
Q ss_pred eEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCC-------CCcc-ccCCeeEEEcCeEeCCcceEEee
Q 023976 107 AITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQ-------RMPR-CRHGYFHVVNNDYTHWEMYALGG 178 (274)
Q Consensus 107 ~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~-------R~Pr-~r~G~~Hv~NN~~~~~~~yaig~ 178 (274)
+|+|.+|.|...+.+.-++...+ .|++-++.+. .... +.+- -....+.+-|+.+.+- .+++.-
T Consensus 215 nV~I~n~~I~~GDDcIaiksg~~-------nI~I~n~~c~-~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t-~~Giri 285 (404)
T PLN02188 215 GVYISDSRIGTGDDCISIGQGNS-------QVTITRIRCG-PGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT-TNGIRI 285 (404)
T ss_pred cEEEEeeEEeCCCcEEEEccCCc-------cEEEEEEEEc-CCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC-CcEEEE
Confidence 99999999999888887854422 5777777663 2111 0000 0012466777777653 123221
Q ss_pred ---------CCCCeEEEEcCEEecCCCCC
Q 023976 179 ---------SASPTINSQGNRFVAPNDRF 198 (274)
Q Consensus 179 ---------~~~~~i~~egN~F~~~~~~~ 198 (274)
+.-..|.+|+-.++....|.
T Consensus 286 Kt~~g~~~~G~v~nI~f~ni~m~~v~~pI 314 (404)
T PLN02188 286 KTWANSPGKSAATNMTFENIVMNNVTNPI 314 (404)
T ss_pred EEecCCCCceEEEEEEEEeEEecCccceE
Confidence 11235667777776655553
No 26
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.62 E-value=0.044 Score=47.28 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=83.2
Q ss_pred EecceEEcCCCceEEeecCc-eEEe--c-CCcE-------EEee-ece--EEEEceEEEecccCCCccccCCCCCCCCcc
Q 023976 4 TLKEELIMNSFKTIDGRGAS-VHIA--G-GPCI-------TVQY-VTN--IIIHGINIHDCKRGGNANVRDSPSHYGWRT 69 (274)
Q Consensus 4 ~L~~~L~v~snkTI~G~G~~-~~I~--~-G~~l-------~i~~-~~N--VIIrnl~i~~~~~~~~~~i~~~~~~~~~~~ 69 (274)
++.++|.+.|+.||.|.|.. ..+. + ...+ .+.. ..+ +-|+||.|.......
T Consensus 44 ~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~--------------- 108 (225)
T PF12708_consen 44 RISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP--------------- 108 (225)
T ss_dssp EESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE---------------
T ss_pred EEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEeeEEEcccccC---------------
Confidence 56678999999999999774 3333 1 1111 1111 112 449999998632110
Q ss_pred cCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEE------cceecccCeEEEecCCCcccCCCcceEEEEce
Q 023976 70 ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITIS------NNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFN 143 (274)
Q Consensus 70 ~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS------~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN 143 (274)
....++|.+..++++||++|++..+..-.+.+. ..+..++. ++.|+++.. .+.+...
T Consensus 109 ~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 171 (225)
T PF12708_consen 109 NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN----------------NVIVNNC 171 (225)
T ss_dssp -SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE----------------EEEEECE
T ss_pred CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee----------------EEEECCc
Confidence 012477888899999999999998766555554 12222221 222222110 1211222
Q ss_pred EecCCCCCCCccccCC--eeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCC
Q 023976 144 HFGEGLVQRMPRCRHG--YFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPN 195 (274)
Q Consensus 144 ~f~~~~~~R~Pr~r~G--~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~ 195 (274)
++ . ..+.. +..+ .+-+.|+++.+....++....+..+.+++|.|+...
T Consensus 172 ~~-~--~~~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 172 IF-N--GGDNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp EE-E--SSSCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred cc-c--CCCce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 22 1 11111 1111 455667777765556776666677888888887654
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.54 E-value=0.06 Score=53.29 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=83.6
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCC-CCcc-cCCCCcEEEeCCceEEEeceeccCCCCCeEEeee----
Q 023976 30 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHY-GWRT-ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH---- 103 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~-~~~~-~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~---- 103 (274)
.+|.+++++++.|++.+|++.- ..+-++....... ++.- .....+|.+..++++.|.+++++.+.|+.|-+.+
T Consensus 136 AgI~v~~a~~v~Iedn~L~gsg-~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~ 214 (455)
T TIGR03808 136 GLIHCQGGRDVRITDCEITGSG-GNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIG 214 (455)
T ss_pred CEEEEccCCceEEEeeEEEcCC-cceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeec
Confidence 3466788999999999998641 0000111000000 0000 0122348888888999999999999996555532
Q ss_pred -------------------------------CCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCC
Q 023976 104 -------------------------------GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQR 152 (274)
Q Consensus 104 -------------------------------~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R 152 (274)
.+.+++|+.|.++++.+--+.+.+.+ ++.+..|.| .
T Consensus 215 ~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss-------~~~i~~N~~-~----- 281 (455)
T TIGR03808 215 DDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS-------NIQITGNSV-S----- 281 (455)
T ss_pred CCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc-------CcEEECcEe-e-----
Confidence 24578888888888874334433322 445555555 2
Q ss_pred CccccC-C-------e-eEEEcCeEeC-CcceEEe-eCCCCeE-EEEcCEEec
Q 023976 153 MPRCRH-G-------Y-FHVVNNDYTH-WEMYALG-GSASPTI-NSQGNRFVA 193 (274)
Q Consensus 153 ~Pr~r~-G-------~-~Hv~NN~~~~-~~~yaig-~~~~~~i-~~egN~F~~ 193 (274)
++|+ + . .-+.||.+++ -..|++. -.++.++ .++||.-.+
T Consensus 282 --~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 282 --DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred --eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 3444 2 1 2355666653 3456655 2344444 467777654
No 28
>PLN02793 Probable polygalacturonase
Probab=96.37 E-value=0.046 Score=54.19 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=49.0
Q ss_pred cEEEeCCceEEEeceeccC-----CCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEec
Q 023976 75 GVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 75 ai~i~~s~nVWIDHcs~s~-----~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~ 146 (274)
.|.+..++||.|++.++.. -.|| ||+. .+++|+|++|.+...+-...+.+..+ .|++.++.+.
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDG-Idi~-~s~nV~I~n~~I~~gDDcIaik~~s~-------nI~I~n~~c~ 269 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDG-IHIS-ASRGVVIKDSIVRTGDDCISIVGNSS-------RIKIRNIACG 269 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCc-Eeee-ccceEEEEeCEEeCCCCeEEecCCcC-------CEEEEEeEEe
Confidence 4677789999999999965 3565 4776 68999999999999888877754322 6888887773
No 29
>smart00656 Amb_all Amb_all domain.
Probab=96.17 E-value=0.15 Score=44.70 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=69.1
Q ss_pred CcEEEeCCceEEEeceeccCCCC------CeEEeeeCCceEEEEcceecccCeEEEecC----CCccc--CCCcceEEEE
Q 023976 74 DGVSIFGGSHVWVDHCSLSNCND------GLIDAIHGSTAITISNNYMTHHNKVMLLGH----SDTFT--QDKNMQVTIA 141 (274)
Q Consensus 74 Dai~i~~s~nVWIDHcs~s~~~D------glidv~~~s~~VTVS~~~f~~h~k~~LiG~----sd~~~--~d~~~~vT~h 141 (274)
-+|.+.+++||+|=|.+|+...+ -.|.+ .++++|=|-+|.|+... .+|. .|... ....-.||+.
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwIDHct~s~~~---~~~~~~~~~D~~~di~~~s~~vTvs 107 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWIDHVSLSGCT---VTGFGDDTYDGLIDIKNGSTYVTIS 107 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEEccEeEcce---eccCCCCCCCccEEECcccccEEEE
Confidence 34566668899999999998533 25566 36888888888888641 1111 11111 1123479999
Q ss_pred ceEecCCCCCCCccccCC---------eeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCC
Q 023976 142 FNHFGEGLVQRMPRCRHG---------YFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPN 195 (274)
Q Consensus 142 hN~f~~~~~~R~Pr~r~G---------~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~ 195 (274)
.|+|. + ....=.+..+ .+-+.+|||.+-..-+-..+.+ ++.+.||||.+..
T Consensus 108 ~~~f~-~-h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g-~~hv~NN~~~n~~ 167 (190)
T smart00656 108 NNYFH-N-HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFG-YVHVYNNYYTGWT 167 (190)
T ss_pred CceEe-c-CCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCC-EEEEEeeEEeCcc
Confidence 99993 2 2222222221 4778899987643322222223 7888999998754
No 30
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.15 E-value=0.024 Score=48.95 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=57.3
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCC-cEEEeC-CceEEEeceeccCCCCCeEEeeeCCceE
Q 023976 31 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGD-GVSIFG-GSHVWVDHCSLSNCNDGLIDAIHGSTAI 108 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~D-ai~i~~-s~nVWIDHcs~s~~~Dglidv~~~s~~V 108 (274)
++.+..+.|+.|+|+++++.... +..-.....+.. ...... .+.++. +.++++..|.+..+.+| + ..+.+++
T Consensus 114 ~i~~~~~~~~~i~nv~~~~~~~~--~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~--~~~~~~~ 187 (225)
T PF12708_consen 114 GIRFNSSQNVSISNVRIENSGGD--GIYFNTGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCIFNGGDNG-I--ILGNNNI 187 (225)
T ss_dssp EEEETTEEEEEEEEEEEES-SS---SEEEECCEECEE-ECCEEEEEEEEESCEEEEEEECEEEESSSCS-E--ECEEEEE
T ss_pred EEEEEeCCeEEEEeEEEEccCcc--EEEEEccccCcE-eecccceeeeeccceeEEEECCccccCCCce-e--EeecceE
Confidence 46677799999999999974211 110000000000 000011 344443 23455567777777777 2 3344789
Q ss_pred EEEcceecc-cCeEEEecCCCcccCCCcceEEEEceEecCCCC
Q 023976 109 TISNNYMTH-HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 109 TVS~~~f~~-h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~ 150 (274)
+++||.|.. ......+-... .+++.+|.| .+|.
T Consensus 188 ~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 188 TISNNTFEGNCGNGINIEGGS--------NIIISNNTI-ENCD 221 (225)
T ss_dssp EEECEEEESSSSESEEEEECS--------EEEEEEEEE-ESSS
T ss_pred EEEeEEECCccceeEEEECCe--------EEEEEeEEE-ECCc
Confidence 999999886 44444443222 478888888 5664
No 31
>PLN02480 Probable pectinesterase
Probab=95.68 E-value=0.14 Score=49.12 Aligned_cols=109 Identities=22% Similarity=0.389 Sum_probs=70.8
Q ss_pred eEEec-----ceEEc---CCCceEEeecCc-eEEec---------CCcEEEeeeceEEEEceEEEecccCCCccccCCCC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGAS-VHIAG---------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS 63 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~-~~I~~---------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~ 63 (274)
+|.|+ +.|.| ++|+||.|.|.. ..|.+ +..|.+ .+++++++||+|++-.+.+..
T Consensus 79 ~I~Ik~GvY~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~nLTf~Nta~~g~~------- 150 (343)
T PLN02480 79 IVHLRKGVYREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFGISIRNDAPTGMA------- 150 (343)
T ss_pred EEEEcCcEEEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEeeEEEecCCCCCC-------
Confidence 46665 45777 467899998743 34442 223455 579999999999986432110
Q ss_pred CCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCC
Q 023976 64 HYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 127 (274)
Q Consensus 64 ~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~s 127 (274)
...+.-|+.+. .+.++-+.+|.|.-..|=|++-. ..--..+|++..+-- +++|..
T Consensus 151 -----~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~C~IeG~VD-FIFG~g 206 (343)
T PLN02480 151 -----FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK---GRHYYHSCYIQGSID-FIFGRG 206 (343)
T ss_pred -----CCCCCceEEEEecCCcEEEEeeEEecccceeEeCC---CCEEEEeCEEEeeee-EEccce
Confidence 01345677774 58899999999999999998642 234455777664421 255544
No 32
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.03 E-value=0.086 Score=53.47 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred EEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEe-----------
Q 023976 33 TVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDA----------- 101 (274)
Q Consensus 33 ~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv----------- 101 (274)
....++|+.|+||+|..-.+ ...|+|.+..++||-|+-|.|+.+ |-+|-+
T Consensus 265 h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtg-DD~I~iksg~~~~~~~~ 325 (542)
T COG5434 265 HPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTG-DDCIAIKSGAGLDGKKG 325 (542)
T ss_pred eeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecC-CceEEeecccCCccccc
Confidence 34567777777777764211 267999999999999999999984 434433
Q ss_pred eeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCcccc
Q 023976 102 IHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR 157 (274)
Q Consensus 102 ~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r 157 (274)
...+.+|+|++|+|..-.-+..+|+.-. -+-..|++-.|.| .+ ..|.=|+.
T Consensus 326 ~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~-~~-~d~GLRik 376 (542)
T COG5434 326 YGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVM-DN-TDRGLRIK 376 (542)
T ss_pred ccccccEEEecceecccccceEeeeecC---CceeEEEEEeeee-cc-Ccceeeee
Confidence 2234689999999985444445554321 1234689999999 44 56666664
No 33
>PLN02682 pectinesterase family protein
Probab=93.84 E-value=1.7 Score=42.30 Aligned_cols=109 Identities=19% Similarity=0.334 Sum_probs=68.4
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEec----------C--------CcEEEeeeceEEEEceEEEecccCC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASV-HIAG----------G--------PCITVQYVTNIIIHGINIHDCKRGG 54 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~I~~----------G--------~~l~i~~~~NVIIrnl~i~~~~~~~ 54 (274)
+|.++ +.|.| ++|+||.|.|.+- .|.. | +.+.+ .+++++.+||.|++-.+..
T Consensus 101 vI~Ik~G~Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v-~a~~F~a~nlTf~Nt~~~~ 179 (369)
T PLN02682 101 VIKVNAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV-NSPYFIAKNITFKNTAPVP 179 (369)
T ss_pred EEEEeCceeeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-ECCCeEEEeeEEEcccccC
Confidence 46665 45666 4789999998643 3321 1 12333 6899999999999854321
Q ss_pred CccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCC
Q 023976 55 NANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 127 (274)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~s 127 (274)
.+ + ..+.-|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|++..+-- .++|..
T Consensus 180 ------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~---gRqyf~~C~IeG~VD-FIFG~g 237 (369)
T PLN02682 180 ------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL---GRHYFKDCYIEGSVD-FIFGNG 237 (369)
T ss_pred ------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEECC---CCEEEEeeEEccccc-EEecCc
Confidence 00 0 1234566665 47899999999999999888732 244455777764421 245544
No 34
>PLN02432 putative pectinesterase
Probab=93.52 E-value=0.79 Score=43.19 Aligned_cols=103 Identities=22% Similarity=0.381 Sum_probs=66.8
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec--------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVHI-AG--------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH 64 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~I-~~--------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~ 64 (274)
+|.++ +.|.| ++|+||.|.+..-+| .. .+.+.+ .++|++.+||.|++..+
T Consensus 42 ~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nlt~~Nt~g------------ 108 (293)
T PLN02432 42 FIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFLTIQNTFG------------ 108 (293)
T ss_pred EEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEeeEEEeCCC------------
Confidence 46665 45666 478899999764333 21 223344 67999999999998532
Q ss_pred CCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCC
Q 023976 65 YGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 127 (274)
Q Consensus 65 ~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~s 127 (274)
.++-|+.+. .+.++-+.+|.|....|=|++- ...--..+|++..+-- +++|..
T Consensus 109 ------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~VD-FIFG~g 162 (293)
T PLN02432 109 ------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGATD-FICGNA 162 (293)
T ss_pred ------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEeccc-EEecCc
Confidence 123466665 4788999999999999998863 2234455677764422 355654
No 35
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.38 E-value=1.7 Score=44.27 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=62.9
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.|.| ..|+||+|.|.+-+ |++ | +.+.+ .++++|.|||.|++-...
T Consensus 257 vI~vk~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~~F~a~~it~~Ntag~------- 328 (538)
T PLN03043 257 VIYAREGYYEEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGERFVAVDVTFRNTAGP------- 328 (538)
T ss_pred EEEEcCeeeEEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECCCEEEEeeEEEECCCC-------
Confidence 46665 34566 36889999987543 332 2 22333 579999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCe-----------------EEeeeCCceEEEEcceec
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGSTAITISNNYMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dgl-----------------idv~~~s~~VTVS~~~f~ 116 (274)
...-|+.++ .+...-+.+|+|....|=| +|+.=|.-.+-+++|.|.
T Consensus 329 ----------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~ 392 (538)
T PLN03043 329 ----------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLY 392 (538)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEE
Confidence 234677666 4678889999999877754 444444445566666664
No 36
>PLN02773 pectinesterase
Probab=93.23 E-value=0.87 Score=43.37 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=61.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec----------------C------CcEEEeeeceEEEEceEEEec
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAG----------------G------PCITVQYVTNIIIHGINIHDC 50 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~----------------G------~~l~i~~~~NVIIrnl~i~~~ 50 (274)
+|.++ +.|.|. .|+||.|.+..- .|.. | +.+.+ .++|++.+||+|++.
T Consensus 36 ~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaTv~v-~a~~f~a~nlT~~Nt 114 (317)
T PLN02773 36 VIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGTVIV-EGEDFIAENITFENS 114 (317)
T ss_pred EEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceEEEE-ECCCeEEEeeEEEeC
Confidence 46665 456773 578999987643 2331 0 12233 689999999999985
Q ss_pred ccCCCccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceeccc
Q 023976 51 KRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118 (274)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h 118 (274)
.+. ..+-|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|+++.+
T Consensus 115 ~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~---gr~yf~~c~IeG~ 163 (317)
T PLN02773 115 APE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY---GKQYLRDCYIEGS 163 (317)
T ss_pred CCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeCC---CCEEEEeeEEeec
Confidence 321 234555555 46889999999999888887632 2334446666543
No 37
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.19 E-value=3 Score=38.37 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=57.8
Q ss_pred eEEcCCCceEEeec----C-ceEEec--------CCc-------EEEeeeceEEEEceEEEecccCCCccccCCCCCCCC
Q 023976 8 ELIMNSFKTIDGRG----A-SVHIAG--------GPC-------ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGW 67 (274)
Q Consensus 8 ~L~v~snkTI~G~G----~-~~~I~~--------G~~-------l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~ 67 (274)
||.+++..||.|.. . .+.+.+ |.+ ++|..+++..|+.++|++..+
T Consensus 47 Pi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~~~~~i~GvtItN~n~--------------- 111 (246)
T PF07602_consen 47 PIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILANNATISGVTITNPNI--------------- 111 (246)
T ss_pred cEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEecCCCEEEEEEEEcCCC---------------
Confidence 68888888988853 2 222221 211 345567888888888886421
Q ss_pred cccCCCCcEEEeCCceEEEeceeccCC-CCCeEEee----eCCceEEEEcceecc
Q 023976 68 RTISDGDGVSIFGGSHVWVDHCSLSNC-NDGLIDAI----HGSTAITISNNYMTH 117 (274)
Q Consensus 68 ~~~~~~Dai~i~~s~nVWIDHcs~s~~-~Dglidv~----~~s~~VTVS~~~f~~ 117 (274)
..+=+|.|+++ +.-|..|+|+.+ .+|..... .....++|+.|.+..
T Consensus 112 ---~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~ 162 (246)
T PF07602_consen 112 ---ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYF 162 (246)
T ss_pred ---CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEe
Confidence 24567888877 777888999996 56643321 123456677776654
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=93.19 E-value=0.76 Score=46.81 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=60.3
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. +|+||+|.|.+.+ |++ | +.+.+ .+++++.|||.|++-.+.
T Consensus 261 vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~a~nitf~Ntag~------- 332 (541)
T PLN02416 261 IIYVREGVYEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFLARDITIENTAGP------- 332 (541)
T ss_pred EEEEeCceeEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeEEEeeEEEECCCC-------
Confidence 46665 345663 6889999987543 342 1 12344 579999999999985321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceec
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~ 116 (274)
...-|+.+. .+.++-+-+|.|....|=|.+- +..--..+|++.
T Consensus 333 ----------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 376 (541)
T PLN02416 333 ----------EKHQAVALRVNADLVALYRCTINGYQDTLYVH---SFRQFYRECDIY 376 (541)
T ss_pred ----------CCCceEEEEEcCccEEEEcceEecccchhccC---CCceEEEeeEEe
Confidence 234555554 4688899999999888877652 223334455554
No 39
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.48 E-value=1.2 Score=44.99 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=55.5
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.|.|+ +|+||+|.|.+-+ |++ | +.+.+ .++++|.|||.|++-.+.
T Consensus 228 vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~A~nitf~Ntag~------- 299 (509)
T PLN02488 228 VIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFIGIDMCFRNTAGP------- 299 (509)
T ss_pred EEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeEEEeeEEEECCCC-------
Confidence 46665 356663 6889999987644 332 1 11222 579999999999984310
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
..+-|+.++ .+...-+-+|.|....|=|.+
T Consensus 300 ----------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 300 ----------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred ----------CCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 235677776 578899999999998887664
No 40
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.48 E-value=1 Score=45.82 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=62.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEecCC------------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAGGP------------CITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~G~------------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.|.|. +|+|+.|.|.+- .|+++. .+.+ .+++++.|||.|++-.+.
T Consensus 256 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~F~a~nitf~Ntag~------- 327 (539)
T PLN02995 256 VIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLHFIAKGITFRNTAGP------- 327 (539)
T ss_pred EEEEeCCEeEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 46665 345663 688999998753 444211 1223 589999999999984310
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 117 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~ 117 (274)
..+-|+.++ .+...-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 328 ----------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~---~Rqyy~~C~I~G 372 (539)
T PLN02995 328 ----------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS---QRQFYRECYIYG 372 (539)
T ss_pred ----------CCCceEEEEEcCCceeEEcceEecccchhccCC---CceEEEeeEEee
Confidence 235677776 47899999999999988887632 223344565553
No 41
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.34 E-value=3.1 Score=43.52 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=77.3
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVHI-AG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~I-~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.|.|. .|+|++|.|.+-+| ++ | +.+.+ .+++++.|||.|++-.+.
T Consensus 281 vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~a~nitf~Ntag~------- 352 (670)
T PLN02217 281 VVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFIAKNIGFENTAGA------- 352 (670)
T ss_pred EEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 46665 345664 47789999875443 32 1 11233 589999999999985321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceeccc----
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIHGSTAITISNNYMTHH---- 118 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~D-----------------glidv~~~s~~VTVS~~~f~~h---- 118 (274)
.+.-|+.++ .+...-+.+|.|...+| |.+|+.-|.-..-+++|.+.--
T Consensus 353 ----------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~~ 422 (670)
T PLN02217 353 ----------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLL 422 (670)
T ss_pred ----------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCCC
Confidence 234666666 47888899999987665 5556655666677888888521
Q ss_pred -CeEEEecCCCcccCCCcceEEEEceEec
Q 023976 119 -NKVMLLGHSDTFTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 119 -~k~~LiG~sd~~~~d~~~~vT~hhN~f~ 146 (274)
.+.++--++... .+....+.|++|.+.
T Consensus 423 ~~~~~ITAqgr~~-~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 423 NQACPITAHGRKD-PRESTGFVLQGCTIV 450 (670)
T ss_pred CCceeEecCCCCC-CCCCceEEEEeeEEe
Confidence 112222111111 122356889999984
No 42
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=92.12 E-value=2.6 Score=37.20 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCc-EEEe-CCceEEEeceeccCCCCCeEE------
Q 023976 29 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHCSLSNCNDGLID------ 100 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Da-i~i~-~s~nVWIDHcs~s~~~Dglid------ 100 (274)
+-.|.+.+++||+|-+..|....... .....|+ |.+. ++.+|=|-+|-|......++-
T Consensus 75 ~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~ 140 (200)
T PF00544_consen 75 GDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSN 140 (200)
T ss_dssp --SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTC
T ss_pred CCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCCc
Confidence 44678889999999999999762210 0012343 5554 467777777777653222221
Q ss_pred eeeCCceEEEEcceecccCe-EEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC-CeeEEEcCeE
Q 023976 101 AIHGSTAITISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDY 168 (274)
Q Consensus 101 v~~~s~~VTVS~~~f~~h~k-~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~-G~~Hv~NN~~ 168 (274)
.......||+-+|+|.+... .=++. .-++-+.+|+| .+..+..=.+|. +++-+-||||
T Consensus 141 ~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 141 STDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred cccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 11122699999999975421 10121 12788999999 566766666664 4788888887
No 43
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=92.07 E-value=1.5 Score=44.53 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=54.9
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVHI-AG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~I-~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.+.| .+|+||+|.|.+-+| ++ | +.+.+ .++|++.|||.|++-.+.
T Consensus 257 vI~Ik~GvY~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F~a~nitf~Ntag~------- 328 (529)
T PLN02170 257 VIYLKAGTYHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGFIARDITFVNSAGP------- 328 (529)
T ss_pred EEEEeCCeeEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCeEEEeeEEEecCCC-------
Confidence 45665 34566 368999999875443 32 1 12233 689999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEe
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDA 101 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv 101 (274)
...-|+.++ .+..+-+.+|.|....|=|.+-
T Consensus 329 ----------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~ 360 (529)
T PLN02170 329 ----------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH 360 (529)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeEeccCCcceeC
Confidence 223555555 4678889999999988877653
No 44
>PLN02176 putative pectinesterase
Probab=92.03 E-value=2.1 Score=41.21 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=62.6
Q ss_pred ceEEcC---CCceEEeecCceEEe--c-------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCC
Q 023976 7 EELIMN---SFKTIDGRGASVHIA--G-------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGD 74 (274)
Q Consensus 7 ~~L~v~---snkTI~G~G~~~~I~--~-------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~D 74 (274)
+.|.|. +|+||.|.|.+-+|. + .+.+.+ .+++++.+||+|++..+..+ .+ ...++-
T Consensus 80 EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nlT~~Nt~~~~~-----~~------~~~~~Q 147 (340)
T PLN02176 80 EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGITFKNTYNIAS-----NS------SRPTKP 147 (340)
T ss_pred EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEeeEEEeCCCccC-----CC------CCCccc
Confidence 456773 588999998754332 1 123444 68999999999998643110 00 012345
Q ss_pred cEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceeccc
Q 023976 75 GVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118 (274)
Q Consensus 75 ai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h 118 (274)
|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|+++.+
T Consensus 148 AVAl~v~gDr~~f~~C~f~G~QDTLy~~~---gRqyf~~CyIeG~ 189 (340)
T PLN02176 148 AVAARMLGDKYAIIDSSFDGFQDTLFDGK---GRHYYKRCVISGG 189 (340)
T ss_pred eEEEEecCccEEEEccEEecccceeEeCC---cCEEEEecEEEec
Confidence 66665 47889999999999999888742 2444556666643
No 45
>PLN02197 pectinesterase
Probab=91.96 E-value=3.6 Score=42.40 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=54.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec--------CC------cEEEeeeceEEEEceEEEecccCCCccc
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVHI-AG--------GP------CITVQYVTNIIIHGINIHDCKRGGNANV 58 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~I-~~--------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~i 58 (274)
+|.+| +.+.|. +|+|+.|.|.+-+| ++ |. .+.+ .++++|.|||.|++-.+.
T Consensus 306 vI~Ik~GvY~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~----- 379 (588)
T PLN02197 306 IIHIKAGIYNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGP----- 379 (588)
T ss_pred EEEEeCceEEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCC-----
Confidence 46665 345664 58899999875333 21 11 1233 589999999999984311
Q ss_pred cCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 59 RDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 59 ~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
.+.-|+.++ .+...-+.+|.|....|=|.+
T Consensus 380 ------------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 ------------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred ------------CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 234566666 478899999999998887765
No 46
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=91.96 E-value=1.4 Score=45.21 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=54.5
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASV-HIAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.+| +.|.| ..|+||+|.|.+- .|++ | +.+.+ .+++++.|||.|++-.+.
T Consensus 284 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~------- 355 (566)
T PLN02713 284 VIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQNFVAVNITFRNTAGP------- 355 (566)
T ss_pred EEEEcCcEEEEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 45565 34566 3678999998653 3432 2 12334 579999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 356 ----------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 356 ----------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 234566665 477888999999998887665
No 47
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=91.94 E-value=1.3 Score=45.19 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=54.3
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceE-Eec-------C------CcEEEeeeceEEEEceEEEecccCCCcccc
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVH-IAG-------G------PCITVQYVTNIIIHGINIHDCKRGGNANVR 59 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~-I~~-------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~ 59 (274)
+|.++ +.+.| ..|+||+|.|.+-+ |++ | +.+.+ .+++++.|||+|++-..
T Consensus 273 vI~vk~GvY~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~f~a~~it~~Ntag------- 344 (553)
T PLN02708 273 VIRIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDGFMARDLTIQNTAG------- 344 (553)
T ss_pred EEEEeCceEEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCCeEEEeeEEEcCCC-------
Confidence 45665 34455 36889999986543 332 2 11233 57999999999997421
Q ss_pred CCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 60 DSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 60 ~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
....-|+.++ .+..+-+.+|.|....|=|..
T Consensus 345 ----------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 345 ----------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred ----------CCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 0234677776 478999999999988776654
No 48
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=91.92 E-value=4 Score=41.92 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=53.9
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------C-C------cEEEeeeceEEEEceEEEecccCCCcccc
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAG------G-P------CITVQYVTNIIIHGINIHDCKRGGNANVR 59 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~------G-~------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~ 59 (274)
+|.++ +.+.|. +|+||.|.|.+- .|++ | . .+.+ .+++++.|||.|++-.+.
T Consensus 290 vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F~a~nitf~Ntag~------ 362 (572)
T PLN02990 290 VIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHFTAKNIGFENTAGP------ 362 (572)
T ss_pred EEEEeCceeEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCEEEEeeEEEeCCCC------
Confidence 46665 345663 688999998653 3431 1 1 1223 579999999999985321
Q ss_pred CCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 60 DSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 60 ~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
.+.-|+.++ .+...-+.+|.|....|=|.+
T Consensus 363 -----------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 363 -----------EGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred -----------CCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 245677776 578899999999987775543
No 49
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=91.76 E-value=0.5 Score=46.63 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=26.6
Q ss_pred eEEEEceEecCCCCCC--Ccccc-CCeeE-EEcCeEeCCcce----------EEeeC------CCCeEEEEcCEEecCCC
Q 023976 137 QVTIAFNHFGEGLVQR--MPRCR-HGYFH-VVNNDYTHWEMY----------ALGGS------ASPTINSQGNRFVAPND 196 (274)
Q Consensus 137 ~vT~hhN~f~~~~~~R--~Pr~r-~G~~H-v~NN~~~~~~~y----------aig~~------~~~~i~~egN~F~~~~~ 196 (274)
+-|+..|+|. +...+ .+=+| +|.=| ++|||+++-..+ +.-.+ .-..+++++|-|.+...
T Consensus 246 ~n~V~gN~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 246 RNTVEGNVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp S-EEES-EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred CceEeccEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 5677888884 44432 45566 46655 558888754221 11111 11346778888887664
Q ss_pred C
Q 023976 197 R 197 (274)
Q Consensus 197 ~ 197 (274)
+
T Consensus 325 ~ 325 (425)
T PF14592_consen 325 P 325 (425)
T ss_dssp E
T ss_pred c
Confidence 3
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=91.74 E-value=1.5 Score=44.41 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=60.8
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.|.|+ +|+||+|.|.+- .|++ | +.+.+ .+++++.+||.|++-.+.
T Consensus 237 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~a~nitf~Ntag~------- 308 (520)
T PLN02201 237 VIYIKKGVYLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFIARDITFQNTAGP------- 308 (520)
T ss_pred EEEEeCceeEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeEEEeeEEEECCCC-------
Confidence 46665 445663 578999998653 3331 1 11223 589999999999985321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 117 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~ 117 (274)
...-|+.++ .+...-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 309 ----------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~---~Rqyy~~C~I~G 353 (520)
T PLN02201 309 ----------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT---MRQFYRECRITG 353 (520)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC---CCEEEEeeEEee
Confidence 234566665 46889999999999988887642 122234555553
No 51
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=91.70 E-value=3.6 Score=42.35 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=54.2
Q ss_pred eEEecc----e--EEcC---CCceEEeecCceE-EecCC------------cEEEeeeceEEEEceEEEecccCCCcccc
Q 023976 2 VITLKE----E--LIMN---SFKTIDGRGASVH-IAGGP------------CITVQYVTNIIIHGINIHDCKRGGNANVR 59 (274)
Q Consensus 2 ~I~L~~----~--L~v~---snkTI~G~G~~~~-I~~G~------------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~ 59 (274)
+|.++. | |.|. +|+||+|.|.+-+ |+++. .+. -.+++++.|||.|++-.+.
T Consensus 303 vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~-v~~~~F~a~~itf~Ntag~------ 375 (587)
T PLN02484 303 IIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFA-ATGAGFIARDMTFENWAGP------ 375 (587)
T ss_pred EEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEE-EEcCCEEEEeeEEEECCCC------
Confidence 466662 3 6674 6889999987543 44321 122 3589999999999985321
Q ss_pred CCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 60 DSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 60 ~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+.+.-+.+|.|....|=|.+
T Consensus 376 -----------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 376 -----------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred -----------CCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 234566665 478888999999987776554
No 52
>PLN02304 probable pectinesterase
Probab=91.59 E-value=2 Score=41.99 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=75.3
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec------------CCcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVHI-AG------------GPCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~I-~~------------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.|.| ++|+||.|.|..-++ .. -+.+.+ .+++++.+||.|++..+..
T Consensus 106 vI~Ik~GvY~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~a~nITf~Nta~~~------ 178 (379)
T PLN02304 106 VIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFIAKNISFMNVAPIP------ 178 (379)
T ss_pred EEEEeCeEeEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeEEEeeEEEecCCCC------
Confidence 46665 45677 478899999875333 21 012233 5799999999999864321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVT 139 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT 139 (274)
.+ +..+.-|+.+. .+..+-+.+|.|....|=|.+-. ..--..+|++...-- .++|.. ++=
T Consensus 179 ~~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~---gR~Yf~~CyIeG~VD-FIFG~g---------~A~ 239 (379)
T PLN02304 179 KP------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR---GRHYFKDCYIQGSID-FIFGDA---------RSL 239 (379)
T ss_pred CC------CCCCccEEEEEecCCcEEEEeceEecccceeEeCC---CCEEEEeeEEccccc-EEeccc---------eEE
Confidence 00 01244566665 47889999999999999998743 234455777775422 256654 455
Q ss_pred EEceEe
Q 023976 140 IAFNHF 145 (274)
Q Consensus 140 ~hhN~f 145 (274)
|.+|.+
T Consensus 240 Fe~C~I 245 (379)
T PLN02304 240 YENCRL 245 (379)
T ss_pred EEccEE
Confidence 666655
No 53
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=91.37 E-value=1.8 Score=44.09 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=60.8
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. +|+||.|.|.+- .|.+ | +.+.+ .+++++.|||.|++-.+.
T Consensus 249 vI~Ik~GvY~E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~a~nitf~Ntag~------- 320 (530)
T PLN02933 249 IIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFIAKDISFVNYAGP------- 320 (530)
T ss_pred EEEEcCceEEEEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEEEEeeEEEECCCC-------
Confidence 46665 345663 578999998653 3331 1 11233 579999999999984311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 117 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~ 117 (274)
...-|+.++ .+..+-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 321 ----------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~---~Rqyy~~C~IeG 365 (530)
T PLN02933 321 ----------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS---AKQFYRECDIYG 365 (530)
T ss_pred ----------CCCceEEEEEcCCcEEEEEeEEEecccccccCC---CceEEEeeEEec
Confidence 234666666 47889999999999888777532 223334555543
No 54
>PLN02634 probable pectinesterase
Probab=91.01 E-value=2.6 Score=40.89 Aligned_cols=101 Identities=20% Similarity=0.381 Sum_probs=64.1
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEEe-c----------C--------CcEEEeeeceEEEEceEEEecccCC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASVHIA-G----------G--------PCITVQYVTNIIIHGINIHDCKRGG 54 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~I~-~----------G--------~~l~i~~~~NVIIrnl~i~~~~~~~ 54 (274)
+|.++ +.|.| ++|+||.|.|...+|. . | +.+.+ .+++++.+||+|++-.+..
T Consensus 87 vI~Ik~GvY~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V-~a~~F~a~niTf~Nta~~~ 165 (359)
T PLN02634 87 TIKINAGFYREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV-YANYFTARNISFKNTAPAP 165 (359)
T ss_pred EEEEeCceEEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-ECCCeEEEeCeEEeCCccC
Confidence 46665 44666 4688999998764442 0 1 12333 5799999999999864321
Q ss_pred CccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceeccc
Q 023976 55 NANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118 (274)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h 118 (274)
.+ + ..++-|+.+. .+.+.-+..|.|....|=|.+-. ..--..+|++..+
T Consensus 166 ------~~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~---gR~yf~~CyIeG~ 215 (359)
T PLN02634 166 ------MP---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA---GRHYFKECYIEGS 215 (359)
T ss_pred ------CC---C---CCCCceEEEEecCCcEEEEEeEEecccceeeeCC---CCEEEEeeEEccc
Confidence 00 1 1234566555 46779999999999999888632 2344456666644
No 55
>PLN02916 pectinesterase family protein
Probab=90.96 E-value=2 Score=43.47 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=60.1
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------GP------CITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. +|+||.|.|.+-+ |++ |. .+.+ .+++++.|||.|++-.+.
T Consensus 221 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~A~nitf~Ntag~------- 292 (502)
T PLN02916 221 IIYVKAGVYNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGDGFWARDITFENTAGP------- 292 (502)
T ss_pred EEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECCCEEEEeeEEEeCCCC-------
Confidence 45565 445663 5789999987543 332 11 2223 579999999999985321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 117 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~ 117 (274)
...-|+.+. .+...-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 293 ----------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~---~Rqyy~~C~I~G 337 (502)
T PLN02916 293 ----------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS---LRQFYRDCHIYG 337 (502)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeeEeccCceeEeCC---CCEEEEecEEec
Confidence 234555555 46888899999999888777642 223334555553
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=90.85 E-value=2.2 Score=43.44 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=61.0
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~I-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. +|+||+|.|.+-+| ++ |. .+. -.+++++.|||.|++-...
T Consensus 263 vI~Vk~GvY~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~-v~~~~F~a~nit~~Ntag~------- 334 (537)
T PLN02506 263 IIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVA-VSGRGFIARDITFRNTAGP------- 334 (537)
T ss_pred EEEEeCCeeeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEE-EEcCCeEEEeeEEEeCCCC-------
Confidence 46665 345663 68899999865433 32 11 122 3689999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 117 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~ 117 (274)
.+.-|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 335 ----------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~---~rqyy~~C~I~G 379 (537)
T PLN02506 335 ----------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS---LRQFYRECEIYG 379 (537)
T ss_pred ----------CCCceEEEEecCCcEEEEcceeecccccceecC---CceEEEeeEEec
Confidence 234555555 47889999999999988887632 233444666654
No 57
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=90.78 E-value=2.2 Score=44.04 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=54.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+-+ |++ | +.+.+ .+++++.|||.|++-.+.
T Consensus 316 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~a~nitf~Ntag~------- 387 (596)
T PLN02745 316 VIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFMAKSMGFRNTAGP------- 387 (596)
T ss_pred EEEEeCCeeEEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEEEEeeEEEECCCC-------
Confidence 46665 345664 5889999987543 332 1 11223 689999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 388 ----------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 388 ----------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeEEeeccccccc
Confidence 234566665 478899999999998887765
No 58
>PLN02314 pectinesterase
Probab=90.65 E-value=4.4 Score=41.75 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=53.8
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. .|+|+.|.|..-+ |++ | +.+.+ .+++++.|||.|++-.+.
T Consensus 309 vI~ik~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~a~~itf~Ntag~------- 380 (586)
T PLN02314 309 VIYVKEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFIAKDMGFINTAGA------- 380 (586)
T ss_pred EEEEcCceEEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeEEEeeEEEECCCC-------
Confidence 46665 345563 5789999986543 332 1 11223 689999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ ++...-+.+|.|....|=|.+
T Consensus 381 ----------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 381 ----------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred ----------CCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 234666666 578889999999987776554
No 59
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.43 E-value=1.5 Score=44.75 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=65.2
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeC------------CceEEEeceeccCCCCCe
Q 023976 31 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG------------GSHVWVDHCSLSNCNDGL 98 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~------------s~nVWIDHcs~s~~~Dgl 98 (274)
+|.+..++||.|.+.+|.. +.|+|.++. +++|||=||.|+.++-++
T Consensus 289 G~d~~sc~NvlI~~~~fdt----------------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~ 346 (542)
T COG5434 289 GFDPGSCSNVLIEGCRFDT----------------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGL 346 (542)
T ss_pred ccccccceeEEEeccEEec----------------------CCceEEeecccCCcccccccccccEEEecceecccccce
Confidence 6788889999999999973 234444431 478999999999988888
Q ss_pred EEe---eeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEe
Q 023976 99 IDA---IHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHF 145 (274)
Q Consensus 99 idv---~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f 145 (274)
+.- -.+-.+||+-+|.|.+-+.+.-|...+.-. -+.-+|+|+-+.-
T Consensus 347 v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 347 VLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred EeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEEEEecccc
Confidence 773 234579999999999977766665444321 1122466666655
No 60
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=90.39 E-value=4.8 Score=41.50 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=62.5
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVH-IAG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-I~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. .|+||+|.|.+-+ |++ | +.+.+ .+++++.|||.|++-...
T Consensus 306 vI~ik~GvY~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~a~~itf~Ntag~------- 377 (587)
T PLN02313 306 VIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFLARDITFQNTAGP------- 377 (587)
T ss_pred EEEEeCceeEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 46665 345664 5789999987543 332 2 11223 579999999999985321
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceec
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIHGSTAITISNNYMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~D-----------------glidv~~~s~~VTVS~~~f~ 116 (274)
...-|+.++ ++...-+-+|.|....| |.+|+.=|.-.+-+++|.|.
T Consensus 378 ----------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~ 441 (587)
T PLN02313 378 ----------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDIN 441 (587)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEccEEE
Confidence 234566555 47888899999987666 44555445556667777775
No 61
>PLN02671 pectinesterase
Probab=90.37 E-value=3.1 Score=40.31 Aligned_cols=108 Identities=14% Similarity=0.250 Sum_probs=66.7
Q ss_pred eEEec-----ceEEc---CCCceEEeecC---ceEEec----------C--------CcEEEeeeceEEEEceEEEeccc
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGA---SVHIAG----------G--------PCITVQYVTNIIIHGINIHDCKR 52 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~---~~~I~~----------G--------~~l~i~~~~NVIIrnl~i~~~~~ 52 (274)
+|.++ +.|.| ++++||.|.|. ...|.. | +.+.+ .+++++.+||+|++..+
T Consensus 90 ~I~Ik~GvY~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~v-~a~~F~a~nitfeNt~~ 168 (359)
T PLN02671 90 KIYILPGIYREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVTI-ESDYFCATGITFENTVV 168 (359)
T ss_pred EEEEeCceEEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEEE-ECCceEEEeeEEEcCCC
Confidence 46665 45667 36889999863 344551 1 11233 67999999999998632
Q ss_pred CCCccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCC
Q 023976 53 GGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 127 (274)
Q Consensus 53 ~~~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~s 127 (274)
..++ ..++-|+.+. .+.++-+.+|.|....|=|++-. ..--..+|++..+-- .++|..
T Consensus 169 ~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~CyIeG~VD-FIFG~g 227 (359)
T PLN02671 169 AEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET---GSHYFYQCYIQGSVD-FIFGNA 227 (359)
T ss_pred CCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccEeCC---CcEEEEecEEEEecc-EEecce
Confidence 1100 1234455554 46889999999999999998642 233445777664421 245544
No 62
>PLN02665 pectinesterase family protein
Probab=90.04 E-value=20 Score=34.96 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=55.9
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEecC-----------CcEEEeeeceEEEEceEEEecccCCCccccCC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASV-HIAGG-----------PCITVQYVTNIIIHGINIHDCKRGGNANVRDS 61 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~I~~G-----------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~ 61 (274)
+|.++ +.|.|. +++|+.|.|... .|..+ +.+.+ .+++++.+||.|++-.|.+.+
T Consensus 99 vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a~nitf~Nta~~~~~----- 172 (366)
T PLN02665 99 IIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMAANIIIKNSAPRPDG----- 172 (366)
T ss_pred EEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEEEeeEEEeCCCCcCC-----
Confidence 45555 456663 677999997643 33311 22333 689999999999986542110
Q ss_pred CCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEe
Q 023976 62 PSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDA 101 (274)
Q Consensus 62 ~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv 101 (274)
. ..+.-|+.+. .+.+.-+.+|.|...+|=|.+-
T Consensus 173 -~------~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~ 206 (366)
T PLN02665 173 -K------RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD 206 (366)
T ss_pred -C------CCCcceEEEEEcCCcEEEEcceeccccceeEeC
Confidence 0 1223555554 3688999999999988888764
No 63
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=89.85 E-value=2.5 Score=43.29 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=53.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVHI-AG------G------PCITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~I-~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.+.|. .|+||+|.|..-+| ++ | +.+.+ .+++++.|||.|++-...
T Consensus 289 vI~ik~GvY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~a~~itf~Ntag~------- 360 (565)
T PLN02468 289 IIYVKKGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFMARDMGFRNTAGP------- 360 (565)
T ss_pred EEEEeCCceEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeEEEEEEEEeCCCC-------
Confidence 45555 345663 57899999875433 31 1 11233 579999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
.+.-|+.++ .+...-+.+|.|....|=|.+
T Consensus 361 ----------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 361 ----------IKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred ----------CCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 234566665 578899999999988886654
No 64
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=89.52 E-value=2.5 Score=43.23 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=54.2
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023976 2 VITLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITVQYVTNIIIHGINIHDCKRGGNANVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~I-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~ 60 (274)
+|.++ +.|.|. +|+||+|.|.+.+| ++ |. .+.+ .+++++.|||.|++-.+.
T Consensus 267 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~a~nitf~Ntag~------- 338 (548)
T PLN02301 267 VIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFIAQDIWFQNTAGP------- 338 (548)
T ss_pred EEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceEEEeeEEEECCCC-------
Confidence 45665 445663 68899999875443 31 11 1223 579999999999985311
Q ss_pred CCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 61 SPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 339 ----------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 339 ----------EKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 234556555 468889999999998887665
No 65
>PLN02497 probable pectinesterase
Probab=88.57 E-value=5.2 Score=38.40 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=64.4
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEec--------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCC
Q 023976 2 VITLK-----EELIM---NSFKTIDGRGASV-HIAG--------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH 64 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~I~~--------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~ 64 (274)
+|.++ +.|.| ++++||.|.|..- .|.. -+.+.+ .+++++.+||.|++-.+...
T Consensus 63 ~I~Ik~G~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nlT~~Nt~~~~~--------- 132 (331)
T PLN02497 63 CINVKAGLYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSITFANSYNFPS--------- 132 (331)
T ss_pred EEEEeCcEEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEccEEEeCCCCcc---------
Confidence 46665 45566 3688999998642 2331 122344 68999999999998543100
Q ss_pred CCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEEeeeCCceEEEEcceeccc
Q 023976 65 YGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118 (274)
Q Consensus 65 ~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h 118 (274)
.+. ...+.-|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|++..+
T Consensus 133 ~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~---gRqyf~~C~IeG~ 183 (331)
T PLN02497 133 KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD---GRHYFKRCTIQGA 183 (331)
T ss_pred ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeCC---CcEEEEeCEEEec
Confidence 000 00234566665 47888999999999999998642 2344556666643
No 66
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=88.03 E-value=3.7 Score=39.08 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCcEEEeCCceEEEeceeccCCC-----CCeEEeeeCCceEEEEcceecccCeEEEecCCCcc--cCCCcceEEEEceEe
Q 023976 73 GDGVSIFGGSHVWVDHCSLSNCN-----DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF--TQDKNMQVTIAFNHF 145 (274)
Q Consensus 73 ~Dai~i~~s~nVWIDHcs~s~~~-----Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~--~~d~~~~vT~hhN~f 145 (274)
+-+|.|..+.||+|--.+|.... +-.|.+..++.+|=|-+|.|..|....---+.|+. .....-.||+-.|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 45688888999999999999865 45677877889999999999875442111112221 112345799999999
Q ss_pred cCCCCCCCcccc--------CC--eeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEec
Q 023976 146 GEGLVQRMPRCR--------HG--YFHVVNNDYTHWEMYALGGSASPTINSQGNRFVA 193 (274)
Q Consensus 146 ~~~~~~R~Pr~r--------~G--~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~ 193 (274)
. ++.-- -.+. -| .+-+-+|+|.+...-+-..+ -..+.+-+|||+.
T Consensus 196 h-dh~Ks-sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~ 250 (345)
T COG3866 196 H-DHDKS-SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEG 250 (345)
T ss_pred e-cCCee-eeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEecccccc
Confidence 4 33211 1121 12 35667899987532111111 1246788999984
No 67
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.61 E-value=21 Score=31.79 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=55.8
Q ss_pred ceEEEEcceecccC--eEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC--C-------eeEEEcCeEeCCcce
Q 023976 106 TAITISNNYMTHHN--KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH--G-------YFHVVNNDYTHWEMY 174 (274)
Q Consensus 106 ~~VTVS~~~f~~h~--k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~--G-------~~Hv~NN~~~~~~~y 174 (274)
++|-|=+|.+.+-. -.-|+|...+++.+....|-+|||.|- . ..++|...+ | ..-+.||+|++-...
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY-~-tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY-D-TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee-c-CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 45667777777543 234778766666666668999999994 3 455665552 3 246789999864333
Q ss_pred EEe----------eCCCCeEEEEcCEEecC
Q 023976 175 ALG----------GSASPTINSQGNRFVAP 194 (274)
Q Consensus 175 aig----------~~~~~~i~~egN~F~~~ 194 (274)
|+. .+.+-+..+.+|.+.+.
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeee
Confidence 332 23455667888888664
No 68
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=83.77 E-value=6.4 Score=37.05 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=56.4
Q ss_pred ceEEcC---CCceEEeecCce-EEec------------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccc
Q 023976 7 EELIMN---SFKTIDGRGASV-HIAG------------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTI 70 (274)
Q Consensus 7 ~~L~v~---snkTI~G~G~~~-~I~~------------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~ 70 (274)
+.|.|. +++||+|.|..- .|.+ -+.|.+ .+++++.+||.|++.... ..
T Consensus 41 E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~~~nit~~Nt~g~---------------~~ 104 (298)
T PF01095_consen 41 EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFTAENITFENTAGP---------------SG 104 (298)
T ss_dssp --EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-EEEEEEEEEHCSG---------------SG
T ss_pred cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccceeeeeeEEecCCCC---------------cc
Confidence 456775 588999998753 3442 122344 589999999999985311 01
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 127 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~s 127 (274)
...-||.+. +.++.+.+|.|....|-|+.- ....-..+|++..+-. +++|..
T Consensus 105 ~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD-FIfG~~ 156 (298)
T PF01095_consen 105 GQAVALRVS-GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD-FIFGNG 156 (298)
T ss_dssp ----SEEET--TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-EEEESS
T ss_pred cceeeeeec-CCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc-EEECCe
Confidence 234566654 578899999999999988753 3355667888775422 356654
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=83.51 E-value=16 Score=36.27 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=38.1
Q ss_pred eeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 36 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 36 ~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
.+++++.+||+|++-.+... ...+.-|+.+. .+..+-+.+|.|-...|=|++
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 67999999999998543110 01234566665 478899999999999998886
No 70
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=79.61 E-value=49 Score=32.22 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceE
Q 023976 29 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 108 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~V 108 (274)
..+|.+.++..+.|..-+|.....- +-..-+++|++.++...-|=-..+|...||...=+ |+.-
T Consensus 120 ~~Gi~l~~s~d~~i~~n~i~G~~~~--------------r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~--S~~~ 183 (408)
T COG3420 120 SFGIYLHGSADVRIEGNTIQGLADL--------------RVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT--SQHN 183 (408)
T ss_pred ceEEEEeccCceEEEeeEEeecccc--------------chhhccCceEEEcCCCcEEEcCccccccceEEEcc--cccc
Confidence 4567788999999999999864321 11256899999999999999999999999987643 5566
Q ss_pred EEEcceecc
Q 023976 109 TISNNYMTH 117 (274)
Q Consensus 109 TVS~~~f~~ 117 (274)
+++.|.|++
T Consensus 184 ~~~gnr~~~ 192 (408)
T COG3420 184 VFKGNRFRD 192 (408)
T ss_pred eecccchhh
Confidence 666666663
No 71
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=77.91 E-value=16 Score=33.10 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=61.9
Q ss_pred eEEecceEEcCCCceEEeecCc-----eEEec-------CCcEEEee---eceEEEE-----ceEEEecccCCCccccCC
Q 023976 2 VITLKEELIMNSFKTIDGRGAS-----VHIAG-------GPCITVQY---VTNIIIH-----GINIHDCKRGGNANVRDS 61 (274)
Q Consensus 2 ~I~L~~~L~v~snkTI~G~G~~-----~~I~~-------G~~l~i~~---~~NVIIr-----nl~i~~~~~~~~~~i~~~ 61 (274)
+..+++++.|.+..|.+|.+.. ..+.+ .+-|.|.+ -+||||= .|+... +..+
T Consensus 15 ~~~~~~~i~V~aG~~fDG~~k~~~~~~~~~~~~~q~e~q~~vF~le~GatlkNvIiG~~~~dGIHC~G-----~Ctl--- 86 (215)
T PF03211_consen 15 TVTVSSTIVVKAGEVFDGGMKRYDRGPSACGDGGQSEDQDPVFILEDGATLKNVIIGANQADGIHCKG-----SCTL--- 86 (215)
T ss_dssp EEEESS-EEE-TTEEEEEEEEEEEECCCTT--SSSGSC---SEEEETTEEEEEEEETSS-TT-EEEES-----CEEE---
T ss_pred ceEcccCeEECCCceEeCCeeEEccCCCccCCCCcCCccceEEEecCCCEEEEEEEcCCCcCceEEcC-----CEEE---
Confidence 4678899999999999887321 11110 01133321 3577762 333331 1111
Q ss_pred CCCCCCcccCCCCcEEEeCCc-eEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCe
Q 023976 62 PSHYGWRTISDGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 120 (274)
Q Consensus 62 ~~~~~~~~~~~~Dai~i~~s~-nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k 120 (274)
...||..-..||+++.+.. .+.|.-..+..+.|..|-.. +.-.++|++-...++.|
T Consensus 87 --~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 87 --ENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp --EEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred --EEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEcCCCE
Confidence 1245556678888888877 88888888888888888776 45568888855555554
No 72
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=69.33 E-value=39 Score=31.62 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=61.2
Q ss_pred EeeeceEEEEceEEEecccCCCccccCCCCCCCCcc--------cCCCCcEEEeCCceEEEeceeccC--CCCCeEE---
Q 023976 34 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT--------ISDGDGVSIFGGSHVWVDHCSLSN--CNDGLID--- 100 (274)
Q Consensus 34 i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~--------~~~~Dai~i~~s~nVWIDHcs~s~--~~Dglid--- 100 (274)
++.++||-+.|++|.+... ..|.- ...+|.+.+ .++||-|||..+.. +-|+.=+
T Consensus 94 fR~~~~i~L~nv~~~~A~E------------t~W~c~~i~l~nv~~~gdYf~m-~s~ni~id~l~~~GnY~Fq~~kNvei 160 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE------------TLWNCRGIKLKNVQANGDYFFM-NSENIYIDNLVLDGNYSFQYCKNVEI 160 (277)
T ss_pred hhcccCcEEEeeEeCCCcc------------cCEEeCCeEEEeEEEeceEeee-eccceEEeceEEeCCEEeeceeeEEE
Confidence 4567788888888754321 22210 122333332 36788888887754 2232222
Q ss_pred ------eee---CCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccCCeeEEEcCeEeC
Q 023976 101 ------AIH---GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH 170 (274)
Q Consensus 101 ------v~~---~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~Hv~NN~~~~ 170 (274)
.+. .+.+|||-.+.+..- -+|...+ .+|+.++.. . +-+|.+---.+-+.|+-+.+
T Consensus 161 ~ns~l~sKDAFWn~eNVtVyDS~i~GE----YLgW~Sk-------NltliNC~I-~---g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 161 HNSKLDSKDAFWNCENVTVYDSVINGE----YLGWNSK-------NLTLINCTI-E---GTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred EccEEecccccccCCceEEEcceEeee----EEEEEcC-------CeEEEEeEE-e---ccCccEeecceEEeCcEeec
Confidence 111 135666666666432 2333322 799999998 4 34587765667788888764
No 73
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=53.44 E-value=27 Score=33.35 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=38.3
Q ss_pred EeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeE
Q 023976 34 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLI 99 (274)
Q Consensus 34 i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dgli 99 (274)
+.+.+..||||++-+++.|.-+. ...-|.-.+.|+++.|..||...+-.+.--||
T Consensus 264 vengkhfvirnvkaknitpdfsk-----------kagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 264 VENGKHFVIRNIKAKNITPDFSK-----------KAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred ecCCcEEEEEeeeccccCCCchh-----------hcCCCcceEEEEcccceEEeccccccccccEE
Confidence 46778899999999988775311 11123445788999999999988776654443
No 74
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=52.62 E-value=75 Score=32.24 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=37.5
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEe-CCceEEEeceeccCCCCCeEE
Q 023976 30 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 100 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~-~s~nVWIDHcs~s~~~Dglid 100 (274)
+.+.+ .+++++.|||.|++-.+. .+.-|+.+. .+.++-+.+|.|....|=|.+
T Consensus 263 aT~~v-~~~~F~a~nitf~Ntag~-----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 263 ATFTI-TGDGFIARDIGFKNAAGP-----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eeEEE-ECCCeEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 33445 579999999999985311 123455555 478888999999988887665
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=52.34 E-value=1.6e+02 Score=26.29 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=45.7
Q ss_pred CCceEEEeceeccCC-CCCeEEe-----eeCCceEEEEcceecccCeEEEec--CCCcccCC-CcceEEEEceEecCCCC
Q 023976 80 GGSHVWVDHCSLSNC-NDGLIDA-----IHGSTAITISNNYMTHHNKVMLLG--HSDTFTQD-KNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 80 ~s~nVWIDHcs~s~~-~Dglidv-----~~~s~~VTVS~~~f~~h~k~~LiG--~sd~~~~d-~~~~vT~hhN~f~~~~~ 150 (274)
.+++|+|.|+.|..+ ....++. ..|-.+..|-||.|+.-..+.+.- ........ .+...++..|.+ .++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeee
Confidence 467999999999985 4444443 234456789999999644433221 11111222 355678888888 6888
Q ss_pred CCC
Q 023976 151 QRM 153 (274)
Q Consensus 151 ~R~ 153 (274)
+|.
T Consensus 111 ~r~ 113 (198)
T PF08480_consen 111 KRK 113 (198)
T ss_pred ecc
Confidence 773
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=47.08 E-value=37 Score=22.02 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceec
Q 023976 76 VSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 116 (274)
Q Consensus 76 i~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~ 116 (274)
|.+..+++..|..+.++...|| |.+. .+..-+|..|.|.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 4444444445555555555553 2222 2344444444443
No 77
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=43.53 E-value=3.3e+02 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.566 Sum_probs=23.0
Q ss_pred EEcCCCceEEeecCceEEec---CCcEEEeeeceEEEEceEEEe
Q 023976 9 LIMNSFKTIDGRGASVHIAG---GPCITVQYVTNIIIHGINIHD 49 (274)
Q Consensus 9 L~v~snkTI~G~G~~~~I~~---G~~l~i~~~~NVIIrnl~i~~ 49 (274)
++|.-=.|+-|. ..+++.| |..+++ .+-++|||.|+.|+
T Consensus 47 ~vInr~l~l~ge-~ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~ 88 (408)
T COG3420 47 FVINRALTLRGE-NGAVLDGGGKGSYVTV-AAPDVIVEGLTVRG 88 (408)
T ss_pred EEEccceeeccc-cccEEecCCcccEEEE-eCCCceeeeEEEec
Confidence 333333344454 2344442 333555 68999999999994
No 78
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=33.71 E-value=1e+02 Score=28.94 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred eeeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcce
Q 023976 35 QYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNY 114 (274)
Q Consensus 35 ~~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~ 114 (274)
.+++|..|.|.+|.++. | .+..++||-+++|.|.|-+ -++. +++++|.+|.
T Consensus 16 f~~~d~~l~~~~f~dGE---------S---------------~LKes~nI~~~~~~F~~KY----P~Wh-~~~~~i~~~~ 66 (277)
T PF12541_consen 16 FGSHDLRLENCTFADGE---------S---------------PLKESRNIELKNCIFKWKY----PLWH-SDNIKIENCY 66 (277)
T ss_pred cccCCCEEEeeEEeCCC---------c---------------ccccccceEEECCEEeeEC----ceEE-ECCeEEEeeE
Confidence 35677777777777421 1 1244677777777777631 2222 4566666677
Q ss_pred ecccCeEEEec
Q 023976 115 MTHHNKVMLLG 125 (274)
Q Consensus 115 f~~h~k~~LiG 125 (274)
|..--++.++=
T Consensus 67 f~~~aRa~iWY 77 (277)
T PF12541_consen 67 FTEMARAAIWY 77 (277)
T ss_pred EeecceeeeeE
Confidence 66555555543
No 79
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=31.21 E-value=53 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.647 Sum_probs=13.2
Q ss_pred CcEEE-eCCceEEEecee
Q 023976 74 DGVSI-FGGSHVWVDHCS 90 (274)
Q Consensus 74 Dai~i-~~s~nVWIDHcs 90 (274)
+.|.+ +.+.-|||+|+.
T Consensus 14 ~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 45555 478999999997
No 80
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=28.45 E-value=63 Score=23.38 Aligned_cols=17 Identities=24% Similarity=0.984 Sum_probs=13.1
Q ss_pred CcEEE-eCCceEEEecee
Q 023976 74 DGVSI-FGGSHVWVDHCS 90 (274)
Q Consensus 74 Dai~i-~~s~nVWIDHcs 90 (274)
+.|.+ +.+.-|||+|+.
T Consensus 14 ~~i~V~Y~G~pV~Iq~vd 31 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 45555 468999999997
No 81
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=24.97 E-value=82 Score=16.86 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=8.0
Q ss_pred eEEEeceeccCCCCC
Q 023976 83 HVWVDHCSLSNCNDG 97 (274)
Q Consensus 83 nVWIDHcs~s~~~Dg 97 (274)
+++|.+|.|+.....
T Consensus 3 ~~~i~~n~i~~~~~~ 17 (26)
T smart00710 3 NVTIENNTIRNNGGD 17 (26)
T ss_pred CEEEECCEEEeCCCC
Confidence 455555555555443
No 82
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=24.40 E-value=53 Score=23.65 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=12.9
Q ss_pred CcEEE-eCCceEEEecee
Q 023976 74 DGVSI-FGGSHVWVDHCS 90 (274)
Q Consensus 74 Dai~i-~~s~nVWIDHcs 90 (274)
+.|.+ +.+.-|||+|+.
T Consensus 14 ~~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 14 EMINVTYKGVPVYIEHVD 31 (58)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 44555 368999999996
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=23.96 E-value=4.2e+02 Score=24.42 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=16.2
Q ss_pred CCcEEEeeeceEEEEceEEEec
Q 023976 29 GPCITVQYVTNIIIHGINIHDC 50 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~ 50 (274)
|.++.|..+ +..|+|-+|+++
T Consensus 114 g~Gi~Iess-~~tI~Nntf~~~ 134 (246)
T PF07602_consen 114 GTGIWIESS-SPTIANNTFTNN 134 (246)
T ss_pred ceEEEEecC-CcEEEeeEEECC
Confidence 456778655 889999999864
No 84
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=23.37 E-value=2.9e+02 Score=28.57 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=36.5
Q ss_pred CCCCcEEEeCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecc-c-CeEEEecCCCcccCC-CcceEEEEceEecC
Q 023976 71 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH-H-NKVMLLGHSDTFTQD-KNMQVTIAFNHFGE 147 (274)
Q Consensus 71 ~~~Dai~i~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~-h-~k~~LiG~sd~~~~d-~~~~vT~hhN~f~~ 147 (274)
...|+|.+...+.| |..|-+..|-.|-+++ ++++|++|.+-. | .-++-+|.......+ .--++.+-||.+ .
T Consensus 371 ~qtDGi~ly~nS~i---~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~-~ 444 (582)
T PF03718_consen 371 FQTDGIELYPNSTI---RDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRW-I 444 (582)
T ss_dssp TT----B--TT-EE---EEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE----S
T ss_pred eccCCccccCCCee---eeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeee-e
Confidence 57899999988877 4556677777776664 789999998863 2 334667777654432 123566777755 2
Q ss_pred CCCCCCcc
Q 023976 148 GLVQRMPR 155 (274)
Q Consensus 148 ~~~~R~Pr 155 (274)
....+-|.
T Consensus 445 ~~~~~~n~ 452 (582)
T PF03718_consen 445 WHNNYVNT 452 (582)
T ss_dssp SGGCTTT-
T ss_pred cccCCCCc
Confidence 34444443
No 85
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=23.02 E-value=3.7e+02 Score=22.25 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=46.6
Q ss_pred eceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeCCceEEEeceeccC---CCCCeEEeeeCCceE-EEEc
Q 023976 37 VTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN---CNDGLIDAIHGSTAI-TISN 112 (274)
Q Consensus 37 ~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~s~nVWIDHcs~s~---~~Dglidv~~~s~~V-TVS~ 112 (274)
..++-|||..++..+--.+.. ++. .. ...+-|.+.|.-....+|-=|.-++ ++.|.+|+..+.+.| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~-kd~--ei---s~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGN-KDD--EI---SPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCCC-cCC--Ee---CccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 347888999887654211000 000 00 1245678888877888888888765 688999999887777 8877
Q ss_pred c
Q 023976 113 N 113 (274)
Q Consensus 113 ~ 113 (274)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 4
No 86
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=21.34 E-value=3.5e+02 Score=26.73 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=47.8
Q ss_pred CCceEEEEcceeccc---CeEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccCCeeEEEcCeEeCCcceEEeeCC
Q 023976 104 GSTAITISNNYMTHH---NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA 180 (274)
Q Consensus 104 ~s~~VTVS~~~f~~h---~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~Hv~NN~~~~~~~yaig~~~ 180 (274)
+-..||+.++.|..- .-+...... +++||.+.| .+...=.=+. ++...+.-..|+.-. -|+-...
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t---------~~~~hgC~F-~gf~g~cl~~-~~~~~VrGC~F~~C~-~gi~~~~ 186 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANT---------NTLFHGCSF-FGFHGTCLES-WAGGEVRGCTFYGCW-KGIVSRG 186 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecc---------eEEEEeeEE-ecCcceeEEE-cCCcEEeeeEEEEEE-EEeecCC
Confidence 567999999999843 333333322 899999999 4533222222 256777777775421 2444455
Q ss_pred CCeEEEEcCEEec
Q 023976 181 SPTINSQGNRFVA 193 (274)
Q Consensus 181 ~~~i~~egN~F~~ 193 (274)
...+.+-.+.|+.
T Consensus 187 ~~~lsVk~C~Fek 199 (386)
T PF01696_consen 187 KSKLSVKKCVFEK 199 (386)
T ss_pred cceEEeeheeeeh
Confidence 5666667777755
No 87
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=20.37 E-value=1.1e+02 Score=21.90 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=13.5
Q ss_pred CCcEEE-eCCceEEEecee
Q 023976 73 GDGVSI-FGGSHVWVDHCS 90 (274)
Q Consensus 73 ~Dai~i-~~s~nVWIDHcs 90 (274)
.+.|.+ +.+.-|||+|+.
T Consensus 13 ~~~i~V~y~G~pV~Ie~vd 31 (58)
T PF08141_consen 13 PDMIEVTYNGVPVWIEHVD 31 (58)
T ss_pred CceEEEEECCEEEEEEEEc
Confidence 355555 468999999996
Done!