Query 023977
Match_columns 274
No_of_seqs 175 out of 1537
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 5.9E-52 1.3E-56 365.5 28.6 250 12-263 1-261 (262)
2 KOG2620 Prohibitins and stomat 100.0 4.1E-50 8.8E-55 337.9 18.4 270 1-273 1-295 (301)
3 PRK11029 FtsH protease regulat 100.0 3.4E-47 7.4E-52 342.5 29.0 247 4-264 17-327 (334)
4 PRK10930 FtsH protease regulat 100.0 6.8E-46 1.5E-50 342.5 28.4 237 4-251 94-345 (419)
5 TIGR01933 hflK HflK protein. H 100.0 1.6E-45 3.4E-50 324.6 28.1 237 7-253 1-252 (261)
6 TIGR01932 hflC HflC protein. H 100.0 1.6E-45 3.5E-50 332.1 28.7 240 4-253 17-310 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 3.7E-44 8.1E-49 312.5 25.4 223 7-238 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 4.7E-43 1E-47 309.7 25.0 228 4-239 12-266 (266)
9 COG0330 HflC Membrane protease 100.0 4.1E-39 8.8E-44 288.1 28.1 246 4-255 18-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 4.1E-37 8.8E-42 263.6 23.3 202 10-250 1-214 (215)
11 cd03406 Band_7_3 A subgroup of 100.0 7.9E-35 1.7E-39 256.4 21.6 182 4-188 2-210 (280)
12 cd03401 Band_7_prohibitin Band 100.0 8.1E-35 1.8E-39 245.9 19.1 179 6-194 1-194 (196)
13 cd03402 Band_7_2 A subgroup of 100.0 1.6E-33 3.6E-38 241.2 18.3 159 6-169 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 7.8E-32 1.7E-36 230.0 11.6 211 2-253 50-274 (288)
15 smart00244 PHB prohibitin homo 100.0 4.1E-28 9E-33 197.7 15.7 145 5-153 1-159 (160)
16 PF01145 Band_7: SPFH domain / 99.9 6.5E-28 1.4E-32 199.9 10.8 159 8-170 1-178 (179)
17 KOG3090 Prohibitin-like protei 99.9 2.1E-24 4.6E-29 178.6 15.7 223 3-252 34-273 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 6.2E-23 1.3E-27 169.8 10.0 221 5-254 25-265 (271)
19 cd03408 Band_7_5 A subgroup of 99.8 7.6E-19 1.6E-23 149.4 13.6 146 5-153 14-206 (207)
20 KOG2962 Prohibitin-related mem 99.8 7.1E-17 1.5E-21 134.7 17.8 179 5-186 21-226 (322)
21 KOG2668 Flotillins [Intracellu 99.8 3.1E-16 6.7E-21 137.8 22.2 237 7-252 2-384 (428)
22 cd03400 Band_7_1 A subgroup of 99.7 3.2E-16 7E-21 122.8 8.7 107 47-153 3-123 (124)
23 COG2268 Uncharacterized protei 99.6 2.6E-14 5.6E-19 134.3 18.9 181 3-185 28-246 (548)
24 cd03399 Band_7_flotillin Band_ 99.6 9.7E-15 2.1E-19 115.1 8.9 106 47-152 2-126 (128)
25 cd02106 Band_7 The band 7 doma 99.4 8.7E-12 1.9E-16 95.9 11.3 102 50-153 5-120 (121)
26 PTZ00491 major vault protein; 98.6 3.3E-06 7.2E-11 83.5 19.3 121 7-130 464-609 (850)
27 PF13421 Band_7_1: SPFH domain 98.6 4.4E-06 9.5E-11 71.3 15.7 145 6-153 15-206 (211)
28 COG4260 Membrane protease subu 97.7 0.0011 2.3E-08 58.0 12.3 147 6-153 40-233 (345)
29 cd03405 Band_7_HflC Band_7_Hfl 97.4 0.0011 2.4E-08 57.5 8.8 57 150-206 169-225 (242)
30 TIGR01932 hflC HflC protein. H 96.8 0.0093 2E-07 54.1 9.5 49 156-204 230-278 (317)
31 PRK11029 FtsH protease regulat 96.7 0.013 2.7E-07 53.6 9.8 54 152-205 236-289 (334)
32 cd03407 Band_7_4 A subgroup of 96.6 0.0062 1.3E-07 53.7 7.1 48 166-213 154-201 (262)
33 cd03404 Band_7_HflK Band_7_Hfl 96.6 0.017 3.7E-07 50.9 9.4 50 164-213 185-234 (266)
34 TIGR01933 hflK HflK protein. H 96.4 0.034 7.4E-07 48.9 10.2 54 153-206 169-222 (261)
35 PF12127 YdfA_immunity: SigmaW 96.3 0.029 6.3E-07 49.0 8.9 106 49-158 122-233 (316)
36 COG2268 Uncharacterized protei 96.1 0.25 5.3E-06 47.7 14.7 75 178-254 411-493 (548)
37 KOG2620 Prohibitins and stomat 96.0 0.013 2.8E-07 50.9 5.1 53 152-204 176-228 (301)
38 PRK13665 hypothetical protein; 95.5 0.039 8.5E-07 48.0 6.2 106 48-157 126-237 (316)
39 COG0330 HflC Membrane protease 93.3 0.26 5.7E-06 43.9 6.8 50 163-213 181-230 (291)
40 PRK10930 FtsH protease regulat 92.2 1.1 2.3E-05 42.4 9.4 42 154-195 266-307 (419)
41 PF11978 MVP_shoulder: Shoulde 90.3 1.8 4E-05 33.1 7.2 63 59-121 10-76 (118)
42 PRK01558 V-type ATP synthase s 90.2 1.3 2.8E-05 37.4 7.2 47 147-193 9-57 (198)
43 PRK01558 V-type ATP synthase s 89.9 2.9 6.3E-05 35.2 9.1 25 173-197 26-50 (198)
44 TIGR01147 V_ATP_synt_G vacuola 88.8 3.3 7.1E-05 31.7 7.7 40 149-188 7-46 (113)
45 COG1580 FliL Flagellar basal b 87.8 3.1 6.8E-05 33.8 7.5 72 65-143 76-154 (159)
46 PRK02292 V-type ATP synthase s 83.7 9.3 0.0002 31.7 8.7 42 150-191 6-47 (188)
47 PLN03086 PRLI-interacting fact 83.4 1.2 2.7E-05 43.3 3.7 19 230-251 80-98 (567)
48 cd03403 Band_7_stomatin_like B 83.2 2.1 4.5E-05 36.2 4.7 25 178-202 156-180 (215)
49 cd03401 Band_7_prohibitin Band 83.0 2.5 5.3E-05 35.2 5.0 25 182-206 171-195 (196)
50 PRK01005 V-type ATP synthase s 82.3 30 0.00065 29.4 12.3 34 162-195 31-64 (207)
51 PRK02292 V-type ATP synthase s 81.9 11 0.00023 31.3 8.4 13 161-173 28-40 (188)
52 KOG2668 Flotillins [Intracellu 81.4 5.2 0.00011 36.5 6.6 44 159-204 301-344 (428)
53 KOG3083 Prohibitin [Posttransl 79.4 3.4 7.5E-05 35.4 4.5 22 189-210 203-224 (271)
54 PF03179 V-ATPase_G: Vacuolar 79.2 5.7 0.00012 29.7 5.3 47 148-194 4-50 (105)
55 TIGR01147 V_ATP_synt_G vacuola 79.0 12 0.00026 28.6 7.0 54 160-213 7-62 (113)
56 KOG3090 Prohibitin-like protei 78.6 3.7 7.9E-05 35.2 4.4 41 154-195 202-242 (290)
57 PRK08404 V-type ATP synthase s 77.8 22 0.00047 26.7 8.1 37 149-185 4-40 (103)
58 PF03748 FliL: Flagellar basal 77.7 22 0.00047 25.8 8.1 36 99-134 44-81 (99)
59 PRK04057 30S ribosomal protein 77.7 8.1 0.00018 32.8 6.3 75 58-141 100-182 (203)
60 PRK01005 V-type ATP synthase s 75.6 49 0.0011 28.1 11.3 30 160-189 40-69 (207)
61 PRK06568 F0F1 ATP synthase sub 71.1 39 0.00085 27.3 8.5 13 224-236 128-140 (154)
62 CHL00118 atpG ATP synthase CF0 66.9 65 0.0014 25.8 9.5 9 114-122 47-55 (156)
63 COG2811 NtpF Archaeal/vacuolar 65.1 58 0.0013 24.7 10.6 39 151-189 10-48 (108)
64 PRK06654 fliL flagellar basal 64.9 49 0.0011 27.5 8.0 68 59-134 92-161 (181)
65 PRK14471 F0F1 ATP synthase sub 64.9 71 0.0015 25.7 9.1 10 113-122 32-41 (164)
66 PRK08404 V-type ATP synthase s 64.7 44 0.00095 25.0 7.1 17 174-190 44-60 (103)
67 PRK08475 F0F1 ATP synthase sub 63.9 56 0.0012 26.6 8.3 10 113-122 46-55 (167)
68 PRK06568 F0F1 ATP synthase sub 63.8 62 0.0013 26.2 8.3 9 113-121 28-36 (154)
69 PF01015 Ribosomal_S3Ae: Ribos 63.2 20 0.00043 30.2 5.5 67 59-134 107-175 (194)
70 PRK14472 F0F1 ATP synthase sub 63.2 82 0.0018 25.7 9.5 10 113-122 42-51 (175)
71 TIGR03321 alt_F1F0_F0_B altern 62.6 80 0.0017 27.4 9.5 30 166-195 83-112 (246)
72 PRK09174 F0F1 ATP synthase sub 62.6 90 0.002 26.4 9.5 16 113-128 77-93 (204)
73 PRK09173 F0F1 ATP synthase sub 61.8 63 0.0014 25.9 8.2 23 166-188 65-87 (159)
74 PRK06231 F0F1 ATP synthase sub 60.9 99 0.0022 26.1 9.5 8 114-121 73-80 (205)
75 PF03179 V-ATPase_G: Vacuolar 60.8 30 0.00065 25.7 5.7 42 163-204 8-49 (105)
76 PF06188 HrpE: HrpE/YscL/FliH 60.6 27 0.00059 29.2 5.9 44 142-187 16-59 (191)
77 PRK09098 type III secretion sy 60.3 41 0.00089 29.1 7.1 31 163-193 44-74 (233)
78 PRK08476 F0F1 ATP synthase sub 59.8 85 0.0018 24.8 9.4 9 114-122 32-40 (141)
79 PRK14475 F0F1 ATP synthase sub 59.7 93 0.002 25.2 9.5 15 114-128 35-50 (167)
80 PRK13453 F0F1 ATP synthase sub 59.2 98 0.0021 25.3 9.5 11 112-122 41-51 (173)
81 PRK14474 F0F1 ATP synthase sub 58.9 1E+02 0.0022 26.9 9.5 27 166-192 83-109 (250)
82 cd03406 Band_7_3 A subgroup of 58.9 54 0.0012 29.2 7.8 23 173-195 184-206 (280)
83 COG2811 NtpF Archaeal/vacuolar 58.5 55 0.0012 24.8 6.6 25 159-183 29-53 (108)
84 PRK13460 F0F1 ATP synthase sub 58.3 78 0.0017 25.8 8.2 16 113-128 40-56 (173)
85 COG1890 RPS1A Ribosomal protei 58.0 64 0.0014 27.5 7.6 75 58-141 108-190 (214)
86 PRK07352 F0F1 ATP synthase sub 57.8 81 0.0018 25.7 8.3 19 110-128 40-59 (174)
87 PRK13460 F0F1 ATP synthase sub 57.5 1E+02 0.0023 25.1 9.5 25 167-191 95-119 (173)
88 CHL00019 atpF ATP synthase CF0 56.0 1.1E+02 0.0025 25.1 9.5 18 111-128 46-64 (184)
89 PRK14472 F0F1 ATP synthase sub 55.6 93 0.002 25.4 8.3 7 178-184 108-114 (175)
90 PRK13461 F0F1 ATP synthase sub 55.1 80 0.0017 25.3 7.7 10 113-122 29-38 (159)
91 PTZ00491 major vault protein; 54.2 55 0.0012 33.7 7.7 14 8-21 492-505 (850)
92 PRK05697 flagellar basal body- 53.8 68 0.0015 25.3 6.8 36 99-134 78-115 (137)
93 PRK14473 F0F1 ATP synthase sub 52.5 1.1E+02 0.0025 24.5 8.3 10 113-122 32-41 (164)
94 PRK13454 F0F1 ATP synthase sub 52.3 1.1E+02 0.0023 25.3 8.2 11 113-123 55-65 (181)
95 TIGR01144 ATP_synt_b ATP synth 51.6 1.2E+02 0.0025 23.8 8.2 7 115-121 21-27 (147)
96 PF06188 HrpE: HrpE/YscL/FliH 51.1 48 0.001 27.7 5.9 26 155-180 38-63 (191)
97 PRK05759 F0F1 ATP synthase sub 50.8 1E+02 0.0022 24.4 7.7 21 170-190 86-106 (156)
98 CHL00019 atpF ATP synthase CF0 50.6 98 0.0021 25.5 7.7 21 170-190 106-126 (184)
99 PRK13428 F0F1 ATP synthase sub 50.0 1.2E+02 0.0026 29.0 9.1 15 225-239 144-158 (445)
100 KOG1772 Vacuolar H+-ATPase V1 49.4 58 0.0013 24.5 5.3 39 150-188 8-46 (108)
101 PRK09098 type III secretion sy 49.3 46 0.00099 28.8 5.6 7 232-238 140-146 (233)
102 KOG0742 AAA+-type ATPase [Post 49.2 2.4E+02 0.0052 27.1 10.4 21 174-194 208-228 (630)
103 COG4864 Uncharacterized protei 48.8 68 0.0015 27.6 6.4 76 62-142 140-220 (328)
104 PRK08455 fliL flagellar basal 48.7 1.3E+02 0.0029 24.9 8.1 37 98-134 126-164 (182)
105 TIGR02926 AhaH ATP synthase ar 48.5 69 0.0015 22.8 5.7 29 156-184 7-35 (85)
106 TIGR03321 alt_F1F0_F0_B altern 47.7 1.3E+02 0.0027 26.1 8.3 16 113-128 29-45 (246)
107 PRK07353 F0F1 ATP synthase sub 47.7 1.3E+02 0.0028 23.3 9.5 9 114-122 30-38 (140)
108 PRK13455 F0F1 ATP synthase sub 47.3 1.5E+02 0.0032 24.4 8.2 16 114-129 52-68 (184)
109 PRK05759 F0F1 ATP synthase sub 46.0 1.5E+02 0.0032 23.4 9.5 8 114-121 29-36 (156)
110 PRK12785 fliL flagellar basal 45.7 88 0.0019 25.5 6.6 36 99-134 111-148 (166)
111 PRK07021 fliL flagellar basal 44.1 1.6E+02 0.0035 23.7 7.9 36 99-134 103-140 (162)
112 PRK14473 F0F1 ATP synthase sub 40.0 1.9E+02 0.0042 23.1 9.5 9 175-183 95-103 (164)
113 PRK06669 fliH flagellar assemb 39.6 1.4E+02 0.0031 26.3 7.5 33 154-186 84-116 (281)
114 PRK14474 F0F1 ATP synthase sub 39.5 2.6E+02 0.0056 24.4 12.4 10 228-237 150-159 (250)
115 PRK05696 fliL flagellar basal 37.7 2.2E+02 0.0048 23.1 8.5 37 98-134 110-148 (170)
116 PRK09173 F0F1 ATP synthase sub 35.1 2.3E+02 0.005 22.5 9.5 8 114-121 27-34 (159)
117 PRK13428 F0F1 ATP synthase sub 34.8 2.2E+02 0.0048 27.1 8.3 10 113-122 25-34 (445)
118 PRK06569 F0F1 ATP synthase sub 33.8 2.6E+02 0.0056 22.7 8.1 13 173-185 69-81 (155)
119 COG0711 AtpF F0F1-type ATP syn 32.7 2.6E+02 0.0057 22.5 9.4 9 113-121 30-38 (161)
120 PF07628 DUF1589: Protein of u 32.4 23 0.00049 27.9 1.0 18 22-40 80-97 (164)
121 KOG1749 40S ribosomal protein 31.8 48 0.001 25.5 2.6 31 6-36 90-122 (143)
122 PRK06669 fliH flagellar assemb 29.8 3.9E+02 0.0084 23.5 9.0 6 233-238 197-202 (281)
123 PRK07718 fliL flagellar basal 27.9 95 0.0021 24.5 3.9 62 64-134 61-124 (142)
124 PF05103 DivIVA: DivIVA protei 27.9 38 0.00083 25.9 1.6 28 177-204 82-109 (131)
125 PRK06569 F0F1 ATP synthase sub 27.5 3.3E+02 0.0072 22.0 9.3 10 113-122 34-43 (155)
126 TIGR02499 HrpE_YscL_not type I 26.9 2.8E+02 0.0061 21.9 6.7 10 170-179 25-34 (166)
127 PHA00448 hypothetical protein 26.9 2.1E+02 0.0047 19.6 4.9 12 178-189 27-38 (70)
128 TIGR03825 FliH_bacil flagellar 24.1 3.4E+02 0.0073 23.6 7.1 6 136-141 21-26 (255)
129 PF11740 KfrA_N: Plasmid repli 21.9 3.4E+02 0.0074 20.2 10.5 50 103-155 23-72 (120)
130 PRK15322 invasion protein OrgB 20.8 5.3E+02 0.011 21.9 10.5 28 162-189 16-43 (210)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5.9e-52 Score=365.45 Aligned_cols=250 Identities=65% Similarity=0.926 Sum_probs=236.5
Q ss_pred CCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccchHHHHhcccc
Q 023977 12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS 91 (274)
Q Consensus 12 ~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 91 (274)
+|++|||+|||+++++++|||||++|| ++++...+++|.++++++.+++|+||++|.||++|+|||.|+.+.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~-i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEecc-ccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 589999999999999999999999999 8987557999999999988889999999999999999999987668899999
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHH
Q 023977 92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLR 160 (274)
Q Consensus 92 ~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~ 160 (274)
++...|.+.+++++|+++|+|++++++++|++|+..|.+.+++ |.|++|+||+++.++|++++.|+|++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023977 161 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 240 (274)
Q Consensus 161 ~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~ 240 (274)
++.+.+||+++...+.+|+|++++.+++|+|+|+++.+.|+|+++++..+.++++..+.++++++++..+|+|+|+++++
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998866678888999999999999999997
Q ss_pred CCCCcEEEecCCCCchhhHHHHH
Q 023977 241 SSKTNSVFIPHGPGAVKDIASQI 263 (274)
Q Consensus 241 ~~~~~~i~l~~~~~~~~~~~~~~ 263 (274)
+++ |++++|.+++++.+++.++
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~ 261 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQI 261 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhc
Confidence 655 9999999999999888776
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=4.1e-50 Score=337.91 Aligned_cols=270 Identities=41% Similarity=0.593 Sum_probs=247.2
Q ss_pred CCCceeEEE--ecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEE
Q 023977 1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYR 77 (274)
Q Consensus 1 ~~~~~~~~~--V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yr 77 (274)
||-.+||.+ ||+.+++|++||||+.++|+||+||..|+ ++++.+..+++...+..+. +..|+||+.|.+|.+++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~-~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPV-IDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhh-hhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 566777766 99999999999999999999999999999 8988776776665555554 9999999999999999999
Q ss_pred EccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHH
Q 023977 78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHV 146 (274)
Q Consensus 78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i 146 (274)
|.||...+++|+++|++..|.+++++.+|+.+|++|+|.++..|+.++..|.++|++ ..|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 999765569999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC----------
Q 023977 147 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG---------- 216 (274)
Q Consensus 147 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~---------- 216 (274)
..||+.+.+|+|.++|++.++||+++.++.+|||++++.++.++|.+..++..+.|+++++..++++.++
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred -CChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhhHHHHHHHHHHhhhcC
Q 023977 217 -TSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 273 (274)
Q Consensus 217 -~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (274)
.+..++.+++.+.+|+.++.+++ +.++++|||++|+...++.+|.+.++.+.+..
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 23556678999999999999997 46688999999999999999999999988754
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=3.4e-47 Score=342.51 Aligned_cols=247 Identities=16% Similarity=0.187 Sum_probs=220.0
Q ss_pred ceeEEEecCCceEEEEecCceee-------EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEE
Q 023977 4 ALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ 75 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~~-------~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~ 75 (274)
++||++|++||+|||++||++.+ +++|||||++|| ++++. .+|+|.+.++.+. .++|+|++.|.||++|+
T Consensus 17 ~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPf-id~V~-~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~ 94 (334)
T PRK11029 17 YMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPF-IETVK-MLDARIQTMDNQADRFVTKEKKDLIVDSYIK 94 (334)
T ss_pred HheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCC-ceEEE-EEeeEEEEeeCCCceEEcCCCCEEEEEEEEE
Confidence 47899999999999999999987 489999999999 99984 7999999999986 89999999999999999
Q ss_pred EEEccchHHHHhccc--cC---hHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHh----------------
Q 023977 76 YRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELE---------------- 133 (274)
Q Consensus 76 yrI~d~~~~~~~~~~--~~---~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~---------------- 133 (274)
|||.||. ++++.. .| ....|.+.+++++|+++|+++++++++ +|++|..++++.|+
T Consensus 95 yrI~Dp~--~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~ 172 (334)
T PRK11029 95 WRISDFS--RYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD 172 (334)
T ss_pred EEECCHH--HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 9999853 444432 23 446788999999999999999999998 79999999998877
Q ss_pred --------------------------h--------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023977 134 --------------------------K--------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAE 179 (274)
Q Consensus 134 --------------------------~--------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~ 179 (274)
. |.|++++||+++.++|+++|.|+|++++...+|||++.+..++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~ 252 (334)
T PRK11029 173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT 252 (334)
T ss_pred cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhhH
Q 023977 180 GEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDI 259 (274)
Q Consensus 180 aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~~~~~~~ 259 (274)
|+.++.++.|+|++++++++|+|++++++.+++++.+ +| +++.+++||++|+++++ +++++++||.+. ++
T Consensus 253 A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~--~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~~~----~~ 322 (334)
T PRK11029 253 ADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ--DP---DFYAFIRSLRAYENSFS-GNQDVMVLSPDS----DF 322 (334)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHHHHhc-CCCcEEEECCCh----HH
Confidence 9999999999999999999999999999999999853 33 57888999999999995 445789999863 56
Q ss_pred HHHHH
Q 023977 260 ASQIR 264 (274)
Q Consensus 260 ~~~~~ 264 (274)
+.-|+
T Consensus 323 ~~~l~ 327 (334)
T PRK11029 323 FRYMK 327 (334)
T ss_pred HHHhh
Confidence 66553
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=6.8e-46 Score=342.52 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=211.8
Q ss_pred ceeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecC-CCcccCCCceEEEEEEEEEEEccch
Q 023977 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQYRALAEK 82 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~v~yrI~d~~ 82 (274)
++|||+|+|||+|||+|||+++++++|||||++|| ++++. .++++.+....+ ..++|+|++.|.|+++|+|||.|
T Consensus 94 ~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~Pf-Id~V~-~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D-- 169 (419)
T PRK10930 94 ASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTF-IDEVK-PVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD-- 169 (419)
T ss_pred HheEEEECCCeEEEEEECCcCcceeCCceEEecCc-eEEEE-EEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC--
Confidence 47999999999999999999999999999999999 89884 688876554433 38999999999999999999998
Q ss_pred HHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchHHHH
Q 023977 83 ASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEHVKR 148 (274)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~i~~ 148 (274)
+.+++|++.+++..|.+.++++||+++|+++++++++ +|++|...+++.|++ |+|++++||+++.+
T Consensus 170 p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~ 249 (419)
T PRK10930 170 PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKA 249 (419)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHH
Confidence 4578899999999999999999999999999999999 799999998888876 89999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023977 149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 228 (274)
Q Consensus 149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~ 228 (274)
||++++.|++++++.+++||++++..+.+|+++|++.+.+|+|++++.+++|+|+++++..++.+|.. .|+.+. .
T Consensus 250 Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP~vtr---~ 324 (419)
T PRK10930 250 AFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA--APEITR---E 324 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CHHHHH---H
Confidence 99999999999999999999999999999999999999999999999999999999998888888864 666544 4
Q ss_pred HHHHHHHHHHhcCCCCcEEEecC
Q 023977 229 TQYFDTMKEIGASSKTNSVFIPH 251 (274)
Q Consensus 229 ~~~le~l~~~~~~~~~~~i~l~~ 251 (274)
..|||+|+++++ +.+.++++.
T Consensus 325 RlYletme~vl~--~~~kvivd~ 345 (419)
T PRK10930 325 RLYIETMEKVLG--HTRKVLVND 345 (419)
T ss_pred HHHHHHHHHHHc--cCCEEEEeC
Confidence 569999999995 333344544
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.6e-45 Score=324.60 Aligned_cols=237 Identities=17% Similarity=0.216 Sum_probs=214.1
Q ss_pred EEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHH
Q 023977 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD 85 (274)
Q Consensus 7 ~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (274)
||+|+|||+||+++||++.++++||+||++|| ++++ +.++++.+....+. .++|+||+.|.|+++++|||.|| .+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~-i~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~--~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPF-IEEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDP--YK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCC-ceEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCH--HH
Confidence 58999999999999999999999999999999 8888 47888764432333 68999999999999999999984 56
Q ss_pred HhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchHHHHHhH
Q 023977 86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEHVKRAMN 151 (274)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~i~~ai~ 151 (274)
++|++.+++..|.+.+++++|+++|+++++++++ +|++|+..|.+.|++ |.|++|+||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 8899999999999999999999999999999999 999999999988876 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 023977 152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQY 231 (274)
Q Consensus 152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~ 231 (274)
+++.|++++++.+.+||++++..+.+|++++++.++.|+|+++++.++|+|+++++..+++++.. +| +++.+++|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999853 44 56677889
Q ss_pred HHHHHHHhcCCCCcEEEecCCC
Q 023977 232 FDTMKEIGASSKTNSVFIPHGP 253 (274)
Q Consensus 232 le~l~~~~~~~~~~~i~l~~~~ 253 (274)
|++|+++++ +++++++++.+.
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~ 252 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCC
Confidence 999999994 556778887653
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.6e-45 Score=332.10 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=211.5
Q ss_pred ceeEEEecCCceEEEEecCceeeEe-------CCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEE
Q 023977 4 ALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ 75 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~~~l-------~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~ 75 (274)
++||++|+|||+||+++||++.++. +|||||++|| ++++ +.+|+|.++++.+. +++|+||++|.||++++
T Consensus 17 ~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~-i~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~ 94 (317)
T TIGR01932 17 FQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPF-IEHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIR 94 (317)
T ss_pred HheEEEECCCeEEEEEecCceeccccccccccCCCeEEEecc-ccEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEEE
Confidence 4799999999999999999998654 7999999999 8888 47999999999876 89999999999999999
Q ss_pred EEEccchHHHHhcccc--C---hHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHH-------------------------
Q 023977 76 YRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDI------------------------- 124 (274)
Q Consensus 76 yrI~d~~~~~~~~~~~--~---~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i------------------------- 124 (274)
|||.|+ .++++++. + ++..|.+.+++++|+++|+|+++++++ +|++|
T Consensus 95 yrV~d~--~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (317)
T TIGR01932 95 WRIEDF--KKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKG 172 (317)
T ss_pred EEECCH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchh
Confidence 999984 45666543 3 466799999999999999999999998 56666
Q ss_pred ----HHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023977 125 ----AKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAG 189 (274)
Q Consensus 125 ----~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~A 189 (274)
...|++.+.+ |.|++++||+++.++|++++.|+|++++...++||++.+..++|+|++++.++.|
T Consensus 173 r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~a 252 (317)
T TIGR01932 173 REILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILS 252 (317)
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555553 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCC
Q 023977 190 LGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGP 253 (274)
Q Consensus 190 ea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~ 253 (274)
+|++++..++|+|++++++.+++++.+ +| +++.+++||++|+++++ ++++++++|.+.
T Consensus 253 eA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~~~~~~le~~~~~~~-~~~~~~vl~~~~ 310 (317)
T TIGR01932 253 EAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFYSFWRSLEAYEKSFK-DNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHHHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence 999999999999999999999999864 45 45667889999999995 456789998873
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=3.7e-44 Score=312.47 Aligned_cols=223 Identities=19% Similarity=0.220 Sum_probs=203.4
Q ss_pred EEEecCCceEEEEecCceee-EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHH
Q 023977 7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS 84 (274)
Q Consensus 7 ~~~V~~ge~gVv~~fGk~~~-~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~ 84 (274)
||+|+|||+||+++||++.+ +++||+||++|| ++++ +.+|+|.+.++.+. .++|+|+++|.+++++.|||.|| .
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~-i~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPF-IQQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCC-cceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence 68999999999999999987 689999999999 7887 57999999998876 89999999999999999999985 4
Q ss_pred HHhccccCh----HHHHHHHHHHHHHHHcCCCCHHHHhcC-HHHHHHHHHHHHhh-----------ccccccccchHHHH
Q 023977 85 DAFYKLSNT----RSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEK-----------TLIVDIEPDEHVKR 148 (274)
Q Consensus 85 ~~~~~~~~~----~~~l~~~~~~~lR~~i~~~t~~el~~~-R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ 148 (274)
++++.+.++ +..|.+.+++.+|+++|++++++++++ |++|.+.+++.|++ |.|++|.||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 566655543 367899999999999999999999996 99999999999887 88999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023977 149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 228 (274)
Q Consensus 149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~ 228 (274)
+|++++.|+|++++++.+|||++++.+++|++++++.++.|+|+|++.+++|+|++++++.+++++.. +|+ ++.+
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864 564 5667
Q ss_pred HHHHHHHHHH
Q 023977 229 TQYFDTMKEI 238 (274)
Q Consensus 229 ~~~le~l~~~ 238 (274)
+++|++|+.+
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 8899999875
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=4.7e-43 Score=309.70 Aligned_cols=228 Identities=22% Similarity=0.258 Sum_probs=201.4
Q ss_pred ceeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEE----------Ee--ecC-CCcccCCCceEEE
Q 023977 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QL--DVR-CETKTKDNVFVNV 70 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~----------~~--~~~-~~v~T~D~~~v~v 70 (274)
++||++|+|||+|||++||+++++++||+||++|| ++++...++++.+ .. ..+ ..++|+||++|.+
T Consensus 12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v 90 (266)
T cd03404 12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPY-PIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV 90 (266)
T ss_pred HcEEEEECCCceEEeEEcCccccccCCceeEecCC-CcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence 47899999999999999999999999999999999 6665333433211 11 112 2689999999999
Q ss_pred EEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcC-HHHHHHHHHHHHhh-------------cc
Q 023977 71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEK-------------TL 136 (274)
Q Consensus 71 ~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~-R~~i~~~i~~~l~~-------------v~ 136 (274)
|+++.|||.|+ .+++|+..+++..|.+.+++++|+++|+|++++++++ |+++.+.|++.+++ |.
T Consensus 91 d~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~ 168 (266)
T cd03404 91 EFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN 168 (266)
T ss_pred EEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 99999999985 4678888999999999999999999999999999995 99999999998866 88
Q ss_pred ccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 023977 137 IVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG 216 (274)
Q Consensus 137 I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~ 216 (274)
|++++||+++.++|++++.|++++++.+.+||+++++.+.+|+++|++.++.|+|++++..++|+|+++++..+++++..
T Consensus 169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CChhhhHHHHHHHHHHHHHHHHh
Q 023977 217 TSSKDVMDMVLVTQYFDTMKEIG 239 (274)
Q Consensus 217 ~~~~~~~~~~~~~~~le~l~~~~ 239 (274)
+|+ .+.++.|+++|.+++
T Consensus 249 --~~~---~~~~~~~~~~~~~~~ 266 (266)
T cd03404 249 --APD---VTRERLYLETMEEVL 266 (266)
T ss_pred --ChH---HHHHHHHHHHHHHhC
Confidence 554 445677999999864
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-39 Score=288.07 Aligned_cols=246 Identities=28% Similarity=0.389 Sum_probs=216.9
Q ss_pred ceeEEEecCCceEEEEecCceeeEeC-CcceeecCCC--cceeeEeeceeEEEeec-CC-CcccCCCceEEEEEEEEEEE
Q 023977 4 ALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWCL--GSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQYRA 78 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~~~l~-pGl~~~~P~~--i~~v~~~~~~r~~~~~~-~~-~v~T~D~~~v~v~~~v~yrI 78 (274)
++++++|+|++.+++.+||++.+.++ ||+||++||+ +..+...++.+.++++. ++ .++|+|++.|.||++++|||
T Consensus 18 ~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv 97 (291)
T COG0330 18 FSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRV 97 (291)
T ss_pred HceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEE
Confidence 46899999999999999999999999 9999999994 12222468888899999 66 89999999999999999999
Q ss_pred ccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHH-HHHHHHHHHHhh-----------ccccccccchHH
Q 023977 79 LAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEK-----------TLIVDIEPDEHV 146 (274)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~-~i~~~i~~~l~~-----------v~I~~i~~p~~i 146 (274)
.|+. +++|++.+++..+.+.+++.+|+++|++++++++++|. .++..+.+.|++ |+|++++||+++
T Consensus 98 ~d~~--~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev 175 (291)
T COG0330 98 TDPQ--KAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEV 175 (291)
T ss_pred cCHH--HHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHH
Confidence 9954 78899999999999999999999999999999999777 999999999998 999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023977 147 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 226 (274)
Q Consensus 147 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 226 (274)
..+|+++|.|++++++.+.+||+++++.+.+|+|++++.++.|+|++.+ ...++|++++.+.+++++.+ ....+++
T Consensus 176 ~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 251 (291)
T COG0330 176 QAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQA 251 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhHH
Confidence 9999999999999999999999999999999999999999999999988 44455555577888887653 2334788
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 023977 227 LVTQYFDTMKEIGASSKTNSVFIPHGPGA 255 (274)
Q Consensus 227 ~~~~~le~l~~~~~~~~~~~i~l~~~~~~ 255 (274)
.+++|++.+.+...+++++++++|.+.++
T Consensus 252 ~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 252 LAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 89999999999987667888888987554
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=4.1e-37 Score=263.55 Aligned_cols=202 Identities=29% Similarity=0.364 Sum_probs=168.5
Q ss_pred ecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhc
Q 023977 10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY 88 (274)
Q Consensus 10 V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~ 88 (274)
|+|||+||+++||++.++++||+||++|| ++++.+.+|+|.+.++++. .+.|+|+++|.+++++.|||.|| .++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~-~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPF-IDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDP--VKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEecc-ceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecH--HHHHh
Confidence 78999999999999999999999999999 8887246999999999977 79999999999999999999884 46778
Q ss_pred cccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHH
Q 023977 89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAA 157 (274)
Q Consensus 89 ~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae 157 (274)
.+.+++..|.+.+++++|+++|++++++++++|++|++.|++.|++ |.|++++||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999887 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 023977 158 RLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKE 237 (274)
Q Consensus 158 ~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~ 237 (274)
+++++.+.+|||++++.++.|+|+++... + ...+.++++|+++.
T Consensus 158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~~--------------------------------~----~~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEGERQAAILLAEAAKQAAI--------------------------------N----PAALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHcc--------------------------------C----HHHHHHHHHHHHHH
Confidence 87776655555554443333333332221 1 23445789999999
Q ss_pred HhcCCCCcEEEec
Q 023977 238 IGASSKTNSVFIP 250 (274)
Q Consensus 238 ~~~~~~~~~i~l~ 250 (274)
++++.+.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9987765555544
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=7.9e-35 Score=256.45 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=158.8
Q ss_pred ceeEEEecCCceEEEEecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEE-EEEEEcc
Q 023977 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVAS-VQYRALA 80 (274)
Q Consensus 4 ~~~~~~V~~ge~gVv~~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~d 80 (274)
++|+++|++||+||++|||++. .+++|||||++|| ++++. .++++.++.+.+. .+.|+||+.|.+|.. +.|++++
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPf-Id~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CceEEEECCCeEEEEEECCcccccccCCceEEecCC-ceEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 5799999999999999999985 6789999999999 89884 5899998888764 889999999999965 5555554
Q ss_pred chHHHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccch
Q 023977 81 EKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDE 144 (274)
Q Consensus 81 ~~~~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~ 144 (274)
...+..+ |+.++....|.+.+++.+|+++|+++++++++ +|+++...+++.|++ |.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 3444444 45566788899999999999999999999999 899999999988877 8899999999
Q ss_pred HHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023977 145 HVKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKYLA 188 (274)
Q Consensus 145 ~i~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~A~aeae~~~~~ 188 (274)
++.++| ++|.|||++. +.+.+||+++.+.++.|+++|+-..+.
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~ 210 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL 210 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence 999998 6999999999 999999999999999999999866543
No 12
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=8.1e-35 Score=245.89 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=148.6
Q ss_pred eEEEecCCceEEEEecCceee--EeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccchH
Q 023977 6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA 83 (274)
Q Consensus 6 ~~~~V~~ge~gVv~~fGk~~~--~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (274)
||++|++|++||+++||+... +++||+||++|| ++++ +.+|++.+.++++..+.|+|++.|.++++++|++.++.+
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~-~~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPW-FQKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccc-ccee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 689999999999999998764 899999999999 8888 479999999988888899999999999999999976443
Q ss_pred HHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHh
Q 023977 84 SDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAM 150 (274)
Q Consensus 84 ~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai 150 (274)
...+ ++.+..+..|.+.+++.+|+++|+|+++|++++|++|++.|++.|++ |.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 3332 23233456799999999999999999999999999999999999887 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHH
Q 023977 151 NEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 194 (274)
Q Consensus 151 ~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~ 194 (274)
++++.|+++.+++. ..+.+|+++|++.+++|+|+|+
T Consensus 159 ~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 159 EAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhh
Confidence 99999998865532 2344556666666666555554
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.6e-33 Score=241.16 Aligned_cols=159 Identities=14% Similarity=0.283 Sum_probs=146.3
Q ss_pred eEEEecCCceEEEEecCceeeEe-CCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH
Q 023977 6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (274)
Q Consensus 6 ~~~~V~~ge~gVv~~fGk~~~~l-~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (274)
|||+|+|||.||+++||++.+++ +|||||++|| ++. .++|+|.+.++.+. .+.|+||++|.++++++|||.| +
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~-~~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPF-SSK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEecc-ceE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence 68999999999999999999875 9999999999 665 36999999999987 7999999999999999999999 4
Q ss_pred HHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-------CHHHHHHHHHHHHhh-----------ccccccccchH
Q 023977 84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEK-----------TLIVDIEPDEH 145 (274)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-------~R~~i~~~i~~~l~~-----------v~I~~i~~p~~ 145 (274)
.+++|++.|++..|.+.+++++|+++|+|+++++++ +|++|+.++++.+++ |+|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 578899999999999999999999999999999985 579999999999988 89999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 023977 146 VKRAMNEINAAARLRLAANEKAEA 169 (274)
Q Consensus 146 i~~ai~~~~~Ae~~~~a~~~~Ae~ 169 (274)
+.+||+++|.|+++..|....++|
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988887766665
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.97 E-value=7.8e-32 Score=229.96 Aligned_cols=211 Identities=23% Similarity=0.271 Sum_probs=172.6
Q ss_pred CCceeEEEecCCceEEEEecCceee--EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEE
Q 023977 2 GQALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRA 78 (274)
Q Consensus 2 ~~~~~~~~V~~ge~gVv~~fGk~~~--~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI 78 (274)
..|+|+++|++.|++||.|+|+... .-|||+.|++|| ||+. .++|+|++.+++|+ +++|+|.+.|+||++|+|||
T Consensus 50 S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPC-IDt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri 127 (288)
T KOG2621|consen 50 SIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPC-IDTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI 127 (288)
T ss_pred HHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecc-ccee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe
Confidence 3578999999999999999999874 669999999999 9998 48999999999998 99999999999999999999
Q ss_pred ccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHH
Q 023977 79 LAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVK 147 (274)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~ 147 (274)
.| +..++.+++|.+...+-+.++.||+++|+.++.|++++|+.++.+++..|++ |+|+||.+|.+.+
T Consensus 128 ~d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlq 205 (288)
T KOG2621|consen 128 SD--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQ 205 (288)
T ss_pred cC--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhh
Confidence 99 4567889999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHH
Q 023977 148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVL 227 (274)
Q Consensus 148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~ 227 (274)
.++....+|.|++.|.+..|||+ ..+-. +.+++...++ .+|.+ +
T Consensus 206 ramaaeAeA~reA~Akviaaege----------------------~~as~----al~~aa~v~~------~sp~a----l 249 (288)
T KOG2621|consen 206 RAMAAEAEATREARAKVIAAEGE----------------------KKASE----ALKEAADVIS------ESPIA----L 249 (288)
T ss_pred hhhhchhhhhhhhhhhHHHHHhh----------------------hHHHH----HHHHhhcccc------CCchh----h
Confidence 99876555555444444444433 22221 2222222222 24444 3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCC
Q 023977 228 VTQYFDTMKEIGASSKTNSVFIPHGP 253 (274)
Q Consensus 228 ~~~~le~l~~~~~~~~~~~i~l~~~~ 253 (274)
.++||+++..++. .+++++++|...
T Consensus 250 qLryLqtl~sia~-e~~~tivfP~p~ 274 (288)
T KOG2621|consen 250 QLRYLQTLNSIAA-EKNSTIVFPLPI 274 (288)
T ss_pred hhhhhhcchhhhc-CCCCCcccCCCH
Confidence 4689999999985 566888999753
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=4.1e-28 Score=197.66 Aligned_cols=145 Identities=31% Similarity=0.410 Sum_probs=133.1
Q ss_pred eeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH
Q 023977 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (274)
Q Consensus 5 ~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (274)
+||++|+|||+||+++||++.++++||+||++|| ++++ +.++++.+.++.+. .+.|+|++++.+++++.|||.|+.
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~- 77 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPF-IDRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPL- 77 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecc-eeEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHH-
Confidence 5899999999999999999999999999999999 7887 47999999998877 889999999999999999999854
Q ss_pred HHHhccccChH-HHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-----------ccccccccchHHHHHh
Q 023977 84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAM 150 (274)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai 150 (274)
+++++..+++ ..|.+.+++++|+++++++++++++ +|+++.+.+++.|++ |.|+++.+|+++.++|
T Consensus 78 -~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 78 -KAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred -HHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 5677777777 5899999999999999999999999 799999999999887 8999999999999999
Q ss_pred HHH
Q 023977 151 NEI 153 (274)
Q Consensus 151 ~~~ 153 (274)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 865
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.95 E-value=6.5e-28 Score=199.92 Aligned_cols=159 Identities=29% Similarity=0.404 Sum_probs=104.1
Q ss_pred EEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC---CcccCCCceEEEEEEEEEEEccchHH
Q 023977 8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS 84 (274)
Q Consensus 8 ~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~d~~~~ 84 (274)
|+|+|||+||+++||++..+++||+||++|| ++++ +.++++.++++++. .+.|+|+.++.+++++.|||.++.
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~-- 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPF-IQKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPP-- 76 (179)
T ss_dssp --------------------------------EEE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CC--
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCC-cCeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHH--
Confidence 5899999999999999999999999999998 8887 47999999999887 899999999999999999997643
Q ss_pred HHhccc----cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHH
Q 023977 85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRA 149 (274)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~a 149 (274)
.++..+ .+++..|++.+++++|+++++|++++++++|.++.+.+++.|++ |.|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 445455 67889999999999999999999999999999999999999987 889999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHH
Q 023977 150 MNEINAAARLR-LAANEKAEAE 170 (274)
Q Consensus 150 i~~~~~Ae~~~-~a~~~~Ae~~ 170 (274)
|.+++.|++++ ++++.+||++
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999887 5655555544
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-24 Score=178.56 Aligned_cols=223 Identities=18% Similarity=0.252 Sum_probs=167.8
Q ss_pred CceeEEEecCCceEEEE-ecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEcc
Q 023977 3 QALGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALA 80 (274)
Q Consensus 3 ~~~~~~~V~~ge~gVv~-~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d 80 (274)
...|+|.|+-||++|++ |+|-+. +++..|+||.+|| +++-. .+|+|.++..+....-|+|-+.|++...|.-|-..
T Consensus 34 v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPw-fe~pI-iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~ 111 (290)
T KOG3090|consen 34 VTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPW-FERPI-IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA 111 (290)
T ss_pred ecceeEeecCCceEEEEeccccchhccccCCceEeeec-cccce-eeeeccCcccccCCCCCcceeEEEeeeEEecCCCh
Confidence 34689999999999986 677665 7889999999999 77753 58999999888888999999999999988877764
Q ss_pred chHHHHhc--cccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHH
Q 023977 81 EKASDAFY--KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVK 147 (274)
Q Consensus 81 ~~~~~~~~--~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~ 147 (274)
......+. +.+..+..|.+++++.|++++++|+..++++.|+.++..|++.|.+ |.|+.++|.+++.
T Consensus 112 ~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efT 191 (290)
T KOG3090|consen 112 DQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFT 191 (290)
T ss_pred hhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHH
Confidence 33332222 2233456789999999999999999999999999999999999987 8899999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHH
Q 023977 148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVL 227 (274)
Q Consensus 148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~ 227 (274)
.|++.++.|.|+++.+.+ -+.+|+.|.+.++.+|+|||++.+..++|.+. +| .++
T Consensus 192 aAiEaKQvA~QeAqRA~F--------~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n~----~fi 246 (290)
T KOG3090|consen 192 AAIEAKQVAAQEAQRAKF--------IVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------NP----AFI 246 (290)
T ss_pred HHHHHHHHHHHHHhhhhh--------hhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------Cc----cce
Confidence 999999999998876543 22334444444444444444444444444332 34 345
Q ss_pred HHHHHHHHHHHhc--CCCCcEEEecCC
Q 023977 228 VTQYFDTMKEIGA--SSKTNSVFIPHG 252 (274)
Q Consensus 228 ~~~~le~l~~~~~--~~~~~~i~l~~~ 252 (274)
.+|-+++-++++. +.+.+.++|+.+
T Consensus 247 ~Lrki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090|consen 247 TLRKIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred eehhHHHHHHHHHHHhcCCCeEEeccc
Confidence 5678888887764 244566788765
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.2e-23 Score=169.77 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=170.2
Q ss_pred eeEEEecCCceEEEE-ec-CceeeEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccch
Q 023977 5 LGCIQVDQSTVAIKE-TF-GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK 82 (274)
Q Consensus 5 ~~~~~V~~ge~gVv~-~f-Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~ 82 (274)
+++|.|+-||++|+. || |....+.+.|-||.+|| .++- ..+|.|.++.+++...-|||-++|++...+.||-..+.
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw-~qk~-~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq 102 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPW-VQKP-IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ 102 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeee-ccCc-EEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence 578999999999985 56 44447789999999999 6665 36888888888888889999999999999999876544
Q ss_pred HHHHhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHH
Q 023977 83 ASDAFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRA 149 (274)
Q Consensus 83 ~~~~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~a 149 (274)
....|.+. +..+..|.++....|++++++++..|+++.|+.++..+.+.|.+ |.|+.++|-+++.+|
T Consensus 103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A 182 (271)
T KOG3083|consen 103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA 182 (271)
T ss_pred cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence 43444333 44456788999999999999999999999999999999988877 888899999999999
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023977 150 MNEINAAARLRLAAN---EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 226 (274)
Q Consensus 150 i~~~~~Ae~~~~a~~---~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 226 (274)
++.++.|+|+++.+. .+||.++++.+++||||++++.+.++ +.+.+ +.. +
T Consensus 183 vE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~-----------sla~a------------G~g----L 235 (271)
T KOG3083|consen 183 VEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIAN-----------SLATA------------GDG----L 235 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHH-----------HHhhc------------CCc----e
Confidence 999999999988654 36666776666666666666655443 22221 222 3
Q ss_pred HHHHHHHHHHHHhc--CCCCcEEEecCCCC
Q 023977 227 LVTQYFDTMKEIGA--SSKTNSVFIPHGPG 254 (274)
Q Consensus 227 ~~~~~le~l~~~~~--~~~~~~i~l~~~~~ 254 (274)
+..+.+|+-++++. +.+.++.++|.+.+
T Consensus 236 ielrrlEAa~dia~~Ls~s~nv~YLp~g~s 265 (271)
T KOG3083|consen 236 IELRRLEAAEDIAYQLSRSRNVTYLPAGQS 265 (271)
T ss_pred eeehhhhhHHHHHHHHhcCCCceeccCCcc
Confidence 33567777777653 35678889997643
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.80 E-value=7.6e-19 Score=149.42 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=118.4
Q ss_pred eeEEEecCCceEEEEecCceeeEeCCcceeecCC--C-cc---------------eeeEeeceeEEEeec-------CCC
Q 023977 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWC--L-GS---------------QVAGQLSLRVQQLDV-------RCE 59 (274)
Q Consensus 5 ~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~--~-i~---------------~v~~~~~~r~~~~~~-------~~~ 59 (274)
.|.++|++||.+|++++|++.++++||.|+.+|+ | +. .+ +.++.+.+.... ...
T Consensus 14 ~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd03408 14 GSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFGR 92 (207)
T ss_pred CCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeeee
Confidence 4789999999999999999999999987766542 1 22 23 357777765532 124
Q ss_pred cccCCCceEEEEEEEEEEEccchHHHHhccc---------cChHHHHHHHHHHHHHHHcCCCCHHHHhcC--HHHHHHHH
Q 023977 60 TKTKDNVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAV 128 (274)
Q Consensus 60 v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lR~~i~~~t~~el~~~--R~~i~~~i 128 (274)
..|+|+++|.+++++.|||.||. +++.++ .+....|.+.+++++|+++|++++++++.+ |++|++.+
T Consensus 93 ~~~~~~v~v~v~~~~~~kI~Dp~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 93 DSEFGGVPLRAFGTYSLKVTDPV--LFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCccceEEEEeeEEEEEEEcCHH--HHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 57889999999999999999853 555443 235678999999999999999999999996 99999999
Q ss_pred HHHHhh-----------ccccccccchHHHHHhHHH
Q 023977 129 EEELEK-----------TLIVDIEPDEHVKRAMNEI 153 (274)
Q Consensus 129 ~~~l~~-----------v~I~~i~~p~~i~~ai~~~ 153 (274)
++.+++ |.|++|.||++++++|.++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999877 8999999999999998753
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.76 E-value=7.1e-17 Score=134.66 Aligned_cols=179 Identities=14% Similarity=0.182 Sum_probs=135.8
Q ss_pred eeEEEecCCceEEEEecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEE-EEccc
Q 023977 5 LGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY-RALAE 81 (274)
Q Consensus 5 ~~~~~V~~ge~gVv~~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~y-rI~d~ 81 (274)
+++..|++||+||.+|-|..- .+.+||+|..+|| +.++. .+.+..|+-++.. .|-|+.|+.+..|-.-.. +..++
T Consensus 21 s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPF-iTt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d 98 (322)
T KOG2962|consen 21 SAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPD 98 (322)
T ss_pred HHHhhcccCceEEEEecceeeeccCCCCcEEEeee-eecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchh
Confidence 567889999999999999876 5679999999999 88874 5777788887776 899999999988754222 12222
Q ss_pred hHHHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchH
Q 023977 82 KASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEH 145 (274)
Q Consensus 82 ~~~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~ 145 (274)
..+..+ |+++.....|-+-+...+....+.+|+.+++- --++|..+++..|++ |+++....|+.
T Consensus 99 ~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEa 178 (322)
T KOG2962|consen 99 AVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEA 178 (322)
T ss_pred HHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHH
Confidence 223322 34444455778888999999999999999998 567888888888887 88899999999
Q ss_pred HHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHH
Q 023977 146 VKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKY 186 (274)
Q Consensus 146 i~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~A~aeae~~~ 186 (274)
+...++ .|++|+.+. -.+.+||.++..++++|+..|+-.+
T Consensus 179 iRrN~E-~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~ 226 (322)
T KOG2962|consen 179 IRRNFE-LMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAK 226 (322)
T ss_pred HHHhHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999887 477766432 1245688888888888887666443
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.75 E-value=3.1e-16 Score=137.79 Aligned_cols=237 Identities=17% Similarity=0.121 Sum_probs=164.2
Q ss_pred EEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHH
Q 023977 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD 85 (274)
Q Consensus 7 ~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (274)
|++-.+.+..+++.+|.-...+-+| .|.+|| +++. ++|+...++++.. .+.|+.|+|+.|.+..+.+|..+++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 5677889999999999877666665 456688 6674 7999999999998 699999999999999998885433211
Q ss_pred -------Hhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccch-
Q 023977 86 -------AFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDE- 144 (274)
Q Consensus 86 -------~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~- 144 (274)
.|.+- .+....+...+.+.+|.++|+||++++|.+|.+|.+.+.+..+. ..|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 12221 23445667788899999999999999999999999999988765 4556654443
Q ss_pred -HHHHHhHHHHHHHHHHHH-------------------------------------------------------------
Q 023977 145 -HVKRAMNEINAAARLRLA------------------------------------------------------------- 162 (274)
Q Consensus 145 -~i~~ai~~~~~Ae~~~~a------------------------------------------------------------- 162 (274)
++..++.+..+|+-.++|
T Consensus 158 ~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lA 237 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLA 237 (428)
T ss_pred hHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHH
Confidence 566655544433332222
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHHHhhcchHHHHH
Q 023977 163 --------------------------------------------------------ANEKAEAEKILQIKRAEGEAESKY 186 (274)
Q Consensus 163 --------------------------------------------------------~~~~Ae~~~~~~i~~A~aeae~~~ 186 (274)
....||+++...+..|++||+..+
T Consensus 238 yelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~ir 317 (428)
T KOG2668|consen 238 YELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIR 317 (428)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011345555566777888888888
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc------CCCCcEEEecCC
Q 023977 187 LAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA------SSKTNSVFIPHG 252 (274)
Q Consensus 187 ~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~------~~~~~~i~l~~~ 252 (274)
...+|+|.+..+.|.++++....-++++.. +.+.. ...--|++|+.++. ++-++..+++++
T Consensus 318 k~geAEA~~ieA~akaeaeqm~~ka~v~~~--y~~aa---~l~~lLealp~Ia~~ia~plaktnkI~v~s~g 384 (428)
T KOG2668|consen 318 KQGEAEAFAIEADAKAEAEQMAAKAEVYQA--YAQAA---YLRTLLEALPMIAAEIAAPLAKTNKISVWSHG 384 (428)
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhH---HHHHHHHHHHHHHHHhccchhhcCeEEEEecC
Confidence 888888888888888888777766666532 22221 12336888888763 233466667765
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.66 E-value=3.2e-16 Score=122.80 Aligned_cols=107 Identities=22% Similarity=0.385 Sum_probs=92.3
Q ss_pred eceeEEEeecCCCcccCCCceEEEEEEEEEEEccchHHHHhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHH
Q 023977 47 LSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFE-QKND 123 (274)
Q Consensus 47 ~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~ 123 (274)
+++|.++.+.+.+++|+||+++.++++++|||.++.+...+..+ ...+..|.+.+++++|+++|+|+++++++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 67788888877799999999999999999999876544333232 22445799999999999999999999997 8999
Q ss_pred HHHHHHHHHhh-----------ccccccccchHHHHHhHHH
Q 023977 124 IAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEI 153 (274)
Q Consensus 124 i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~ 153 (274)
|.+.+++.+++ |.|+++.||+++.+||+++
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999988 8899999999999999875
No 23
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=2.6e-14 Score=134.35 Aligned_cols=181 Identities=20% Similarity=0.168 Sum_probs=136.3
Q ss_pred Cce--eEEEecCCceEEEEec---------CceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEE
Q 023977 3 QAL--GCIQVDQSTVAIKETF---------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNV 70 (274)
Q Consensus 3 ~~~--~~~~V~~ge~gVv~~f---------Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v 70 (274)
||+ .||++-+...++|..+ |.-.+++-+|+||++|+ ++.. .++++++..+++.. .++|+||.++.+
T Consensus 28 if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi-~q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v 105 (548)
T COG2268 28 IFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPI-FQTI-ERMSLTTIKLEVEIDNVYTKDGMPLNV 105 (548)
T ss_pred HHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecc-eeee-EEeeeeeeeeeeeeeeeEecCCCccce
Confidence 455 5676444444444444 44558899999999999 7877 47999999999885 899999999999
Q ss_pred EEEEEEEEccch--HHHHh--cccc----ChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh--------
Q 023977 71 VASVQYRALAEK--ASDAF--YKLS----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-------- 134 (274)
Q Consensus 71 ~~~v~yrI~d~~--~~~~~--~~~~----~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-------- 134 (274)
+++...+|.|.. ...+. |... +....+...+.+.||.+++++|+.+++++|..|.+.|.+.+..
T Consensus 106 ~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~ 185 (548)
T COG2268 106 EAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLV 185 (548)
T ss_pred eEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCee
Confidence 999999998742 11222 2222 3455678889999999999999999999999999888877665
Q ss_pred ---ccccccccc-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 023977 135 ---TLIVDIEPD-------EHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESK 185 (274)
Q Consensus 135 ---v~I~~i~~p-------~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~ 185 (274)
+.|.++..+ ..+.++...+..++-.+.+.+.++|.+++..+..++++.++.
T Consensus 186 l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~ 246 (548)
T COG2268 186 LDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAK 246 (548)
T ss_pred eeeeeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHH
Confidence 778888877 899999988877777777777666666666665555544433
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.57 E-value=9.7e-15 Score=115.06 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=90.0
Q ss_pred eceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH--HHHhc---c--ccChHHHHHHHHHHHHHHHcCCCCHHHHh
Q 023977 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA--SDAFY---K--LSNTRSQIQAYVFDVIRASVPKLDLDATF 118 (274)
Q Consensus 47 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~--~~~~~---~--~~~~~~~l~~~~~~~lR~~i~~~t~~el~ 118 (274)
+++|.+.++++. +++|+|++++.++++++|||.|+.. ..... + ..+....+.+.+++++|+++|+|++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578999999987 8999999999999999999998652 11111 1 13457788999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHH
Q 023977 119 EQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNE 152 (274)
Q Consensus 119 ~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~ 152 (274)
++|++|.+.|.+.+++ |.|++|.+|+.+.+++.+
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 9999999999999887 899999999998877653
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.36 E-value=8.7e-12 Score=95.90 Aligned_cols=102 Identities=37% Similarity=0.540 Sum_probs=86.6
Q ss_pred eEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccCh--HHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHH
Q 023977 50 RVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK 126 (274)
Q Consensus 50 r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~--~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~ 126 (274)
+..+.+.+. .++|+||+++.+++++.|+|.|+. .+++..... ...+.+.+.+++|++++.++++++.++|++|.+
T Consensus 5 ~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 82 (121)
T cd02106 5 RRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAA 82 (121)
T ss_pred eeEEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHH
Confidence 334444444 899999999999999999999865 345554433 478999999999999999999999999999999
Q ss_pred HHHHHHhh-----------ccccccccchHHHHHhHHH
Q 023977 127 AVEEELEK-----------TLIVDIEPDEHVKRAMNEI 153 (274)
Q Consensus 127 ~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~ 153 (274)
.+++.+.. |.|+++.+|+++.++++++
T Consensus 83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 83 EVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999876 8899999999999999875
No 26
>PTZ00491 major vault protein; Provisional
Probab=98.64 E-value=3.3e-06 Score=83.47 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=85.0
Q ss_pred EEEecCCceEEEEec--CceeeEeCCcceeecCCCcceeeEeeceeEE---------E--eecC------C-CcccCCCc
Q 023977 7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ---------Q--LDVR------C-ETKTKDNV 66 (274)
Q Consensus 7 ~~~V~~ge~gVv~~f--Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~---------~--~~~~------~-~v~T~D~~ 66 (274)
.|.||.+.+.-|+-+ ++-.-+.||-+.+.-|= +.+. .+++..- . +... . .+-|+|.-
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhA 540 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHA 540 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccc
Confidence 356777776666554 44445579988888776 4442 3443321 1 1111 1 47899999
Q ss_pred eEEEEEEEEEEEc----cchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHH-HHHHHHHH
Q 023977 67 FVNVVASVQYRAL----AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEE 130 (274)
Q Consensus 67 ~v~v~~~v~yrI~----d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~-~i~~~i~~ 130 (274)
.+.+..+.+|+.+ |+.....+|++.|+-.-+...+.+.+|..+++.+++++..+-. -|.+.|..
T Consensus 541 rL~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg 609 (850)
T PTZ00491 541 RLALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFG 609 (850)
T ss_pred eEEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhcc
Confidence 9999999999986 3332356899999999999999999999999999999998443 34555554
No 27
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=98.56 E-value=4.4e-06 Score=71.32 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=102.2
Q ss_pred eEEEecCCceEEEEecCceeeEeCCcceee----cCCC--------------cceeeEeeceeEEE-eec--CCC--ccc
Q 023977 6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCL----PWCL--------------GSQVAGQLSLRVQQ-LDV--RCE--TKT 62 (274)
Q Consensus 6 ~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~----~P~~--------------i~~v~~~~~~r~~~-~~~--~~~--v~T 62 (274)
|--+|++||.+|..+=|++..+.+||.|-. +|++ ...| |-++++... ... +.. ...
T Consensus 15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eV-yFvn~~~~~~~kwGT~~pi~~~D 93 (211)
T PF13421_consen 15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEV-YFVNTKEITNIKWGTPNPIPYRD 93 (211)
T ss_pred CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEE-EEEECeEecCCccCCCCCeeecC
Confidence 567899999999999999988999999875 3330 2233 346655532 122 111 222
Q ss_pred CC--CceEEEEEEEEEEEccchHHHHhccc---------cChHHHHHHHHHHHHHHHcC--CCCHHHHhcCHHHHHHHHH
Q 023977 63 KD--NVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKAVE 129 (274)
Q Consensus 63 ~D--~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lR~~i~--~~t~~el~~~R~~i~~~i~ 129 (274)
.+ .++|..-.+..|||.||. .++.++ ++..+.+++.+.+.+-+.++ ++++.+|-..-.+|++.++
T Consensus 94 ~~~~~v~lra~G~ys~rI~Dp~--~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 94 PEYGPVRLRAFGTYSFRIVDPV--LFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CCCCcEEEEEEEEEEEEEeCHH--HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 22 457788888899999964 333221 23345666666666766665 5789999999999999999
Q ss_pred HHHhh-----------ccccccccchHHHHHhHHH
Q 023977 130 EELEK-----------TLIVDIEPDEHVKRAMNEI 153 (274)
Q Consensus 130 ~~l~~-----------v~I~~i~~p~~i~~ai~~~ 153 (274)
+.|+. +.|.+|.+|++.+++|+++
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 99887 8899999999999988864
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0011 Score=58.05 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=101.3
Q ss_pred eEEEecCCceEEEEecCceeeEe-CCcceee----cCCC--------------cceeeEeeceeEEE-eecC--C--Ccc
Q 023977 6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCL----PWCL--------------GSQVAGQLSLRVQQ-LDVR--C--ETK 61 (274)
Q Consensus 6 ~~~~V~~ge~gVv~~fGk~~~~l-~pGl~~~----~P~~--------------i~~v~~~~~~r~~~-~~~~--~--~v~ 61 (274)
|+.+|.|++-++...-|++..+. ++|.+=+ +|++ -+.| |-+++++.. +... . .+.
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eV-yfvntqe~~girwGT~qpin~~ 118 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEV-YFVNTQEIKGIRWGTPQPINYF 118 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceE-EEEecceecceecCCCCCeecc
Confidence 57789999999988889988665 4775422 3321 3334 457777765 3332 2 222
Q ss_pred c---CCCceEEEEEEEEEEEccchHH-H------HhccccChHHHHHHHHHHHHHHHcCCCCHH--HHhcCHHHHHHHHH
Q 023977 62 T---KDNVFVNVVASVQYRALAEKAS-D------AFYKLSNTRSQIQAYVFDVIRASVPKLDLD--ATFEQKNDIAKAVE 129 (274)
Q Consensus 62 T---~D~~~v~v~~~v~yrI~d~~~~-~------~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~--el~~~R~~i~~~i~ 129 (274)
. .-++++....+..|+|+||..+ . -.|.+++.++.+-+.+..+|-..|+++-.+ .+-.+--+|++.+.
T Consensus 119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~ 198 (345)
T COG4260 119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMA 198 (345)
T ss_pred cccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHH
Confidence 2 2357889999999999996421 0 112234456667777788888888776433 44457788999999
Q ss_pred HHHhh-----------ccccccccchHHHHHhHHH
Q 023977 130 EELEK-----------TLIVDIEPDEHVKRAMNEI 153 (274)
Q Consensus 130 ~~l~~-----------v~I~~i~~p~~i~~ai~~~ 153 (274)
+.|.+ |.|-+|++|++.+..|+.+
T Consensus 199 e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r 233 (345)
T COG4260 199 EVLDEQWTQYGMAVDSFQVASISYPDESQALINMR 233 (345)
T ss_pred HHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence 99987 8999999999999999864
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.35 E-value=0.0011 Score=57.54 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHH
Q 023977 150 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS 206 (274)
Q Consensus 150 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a 206 (274)
...+..|+.++++.+.+||+++++.++.|+|++++.+++|+|+|++..+.+++..+.
T Consensus 169 ~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~ 225 (242)
T cd03405 169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKD 225 (242)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 344566777777888888888888899999999999999999999988888766543
No 30
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.79 E-value=0.0093 Score=54.13 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977 156 AARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 204 (274)
Q Consensus 156 Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a 204 (274)
++-++.++...+++++++..+.|+|++++.+++|+|+|++..+.+++..
T Consensus 230 ~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~ 278 (317)
T TIGR01932 230 SQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYG 278 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3444444455555555555555666666666666666666555555543
No 31
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.72 E-value=0.013 Score=53.59 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHH
Q 023977 152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRD 205 (274)
Q Consensus 152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~ 205 (274)
....|+-++++...+++++++...+.|+|++++.+++|+|+|++..+.+++...
T Consensus 236 ~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~ 289 (334)
T PRK11029 236 RRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ 289 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344566666777777778777778888888888888888888888777776653
No 32
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.63 E-value=0.0062 Score=53.71 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977 166 KAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 213 (274)
Q Consensus 166 ~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a 213 (274)
.|+.++++.+.+|++++.+.+..|+|++++.+++|+|.+++...++++
T Consensus 154 ~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g 201 (262)
T cd03407 154 AAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADG 201 (262)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455555555555555555555566666666666666655555555544
No 33
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.56 E-value=0.017 Score=50.91 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977 164 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 213 (274)
Q Consensus 164 ~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a 213 (274)
...|+.++++.+.+|++++++.+..|+|+|++..+.|+|++++....+++
T Consensus 185 ~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~ 234 (266)
T cd03404 185 VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQG 234 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHH
Confidence 34677777888888899999999999999999999999999887777664
No 34
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.39 E-value=0.034 Score=48.86 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHH
Q 023977 153 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS 206 (274)
Q Consensus 153 ~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a 206 (274)
+.+|+.++...+.+|++++++.+..|+|++++.+++|+|+|++..+.+++-..+
T Consensus 169 ~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~ 222 (261)
T TIGR01933 169 INEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKA 222 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Confidence 445666666677789999999999999999999999999999988777765443
No 35
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=96.30 E-value=0.029 Score=49.04 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=70.6
Q ss_pred eeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHH
Q 023977 49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127 (274)
Q Consensus 49 ~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~ 127 (274)
.....++.|. ....+||..+.+.+.|..|-+ ..+ +-+-...+..+-..-++.+..+=+.-+..+++++-+.|++.
T Consensus 122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~ 197 (316)
T PF12127_consen 122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKT 197 (316)
T ss_pred cCCeeecCcchhhhhcCCeEEEEEEEEEEEec---HHH-hccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHH
Confidence 3344566666 678899999999888888875 223 33444555666666666666666667888999999999988
Q ss_pred HHHH-Hhh---ccccccccch-HHHHHhHHHHHHHH
Q 023977 128 VEEE-LEK---TLIVDIEPDE-HVKRAMNEINAAAR 158 (274)
Q Consensus 128 i~~~-l~~---v~I~~i~~p~-~i~~ai~~~~~Ae~ 158 (274)
+.+. |+. ++|.+|+.-+ ++-+.|..++++.|
T Consensus 198 VL~kgLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQ 233 (316)
T PF12127_consen 198 VLEKGLDAGTAFEILSIDIADIDVGENIGAKLQTDQ 233 (316)
T ss_pred HHhhCCCcCceeEEEEeeeeccccchhhchhhhHHH
Confidence 7654 444 6666665544 45555666655543
No 36
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.25 Score=47.70 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=48.4
Q ss_pred hcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcC--------CCCcEEEe
Q 023977 178 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS--------SKTNSVFI 249 (274)
Q Consensus 178 A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~--------~~~~~i~l 249 (274)
+++++++.+..+.++|++.+.+|+|++++.+.+++++...+.... ..++..-+++|+.++.+ +..+++.+
T Consensus 411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i 488 (548)
T COG2268 411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVI 488 (548)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 445777777777788888888888888888888888754333312 12223456677666531 45567777
Q ss_pred cCCCC
Q 023977 250 PHGPG 254 (274)
Q Consensus 250 ~~~~~ 254 (274)
|...+
T Consensus 489 ~~~~~ 493 (548)
T COG2268 489 GGANG 493 (548)
T ss_pred CCccc
Confidence 76554
No 37
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=95.97 E-value=0.013 Score=50.89 Aligned_cols=53 Identities=28% Similarity=0.240 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977 152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 204 (274)
Q Consensus 152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a 204 (274)
...++|-+|+++|++|||+++..+...+|.+...+..|.|+|++..+.|++-+
T Consensus 176 ailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a 228 (301)
T KOG2620|consen 176 AILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVA 228 (301)
T ss_pred HHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhccc
Confidence 34567778888999999999888888888888888888888888877766544
No 38
>PRK13665 hypothetical protein; Provisional
Probab=95.50 E-value=0.039 Score=48.03 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred ceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHH
Q 023977 48 SLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK 126 (274)
Q Consensus 48 ~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~ 126 (274)
|.....++.|. ....+||..+.+.+.+..|-+ ..+ +-+-..-+..+-..-++.+..+=+.-+..+++++-+.|++
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk 201 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK 201 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHH-HhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence 33445566666 678899999988888877754 222 2232233333444444444445556788899999999997
Q ss_pred HHHH-HHhh---ccccccccch-HHHHHhHHHHHHH
Q 023977 127 AVEE-ELEK---TLIVDIEPDE-HVKRAMNEINAAA 157 (274)
Q Consensus 127 ~i~~-~l~~---v~I~~i~~p~-~i~~ai~~~~~Ae 157 (274)
.+.+ .|+. ++|.+|+.-+ ++-+.|..++++.
T Consensus 202 ~VL~kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~d 237 (316)
T PRK13665 202 TVLSKGLDAGTAFEILSIDIADVDVGKNIGAKLQTD 237 (316)
T ss_pred HHHhccCCcCceeEEEEEeeeccccchhhchhhhHH
Confidence 7654 3554 6665555443 4445556555554
No 39
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.26 Score=43.88 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977 163 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 213 (274)
Q Consensus 163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a 213 (274)
....||.++++.+.+|++++++.++.|+|++++..+.++|.+++ +.++++
T Consensus 181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 44567888888999999999999999999999999999998887 545544
No 40
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=92.17 E-value=1.1 Score=42.36 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977 154 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 195 (274)
Q Consensus 154 ~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a 195 (274)
.+|+..+...+.+|++++++.+..|+|.+++.+++|+|+|++
T Consensus 266 ~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r 307 (419)
T PRK10930 266 REAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR 307 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 355555555666788888888888888888888888888755
No 41
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=90.31 E-value=1.8 Score=33.11 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=50.2
Q ss_pred CcccCCCceEEEEEEEEEEEcc----chHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCH
Q 023977 59 ETKTKDNVFVNVVASVQYRALA----EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQK 121 (274)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d----~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R 121 (274)
.+-|+|.-.+.+..+..|...- +.....+|++.|+-.-+...+.+.+|..+++.+.++...+-
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknS 76 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNS 76 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccH
Confidence 4679999999999999998853 12235689999999999999999999999999999998743
No 42
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=90.25 E-value=1.3 Score=37.35 Aligned_cols=47 Identities=23% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcchHHHHHHhchhhH
Q 023977 147 KRAMNEINAAARLRLAANE--KAEAEKILQIKRAEGEAESKYLAGLGIA 193 (274)
Q Consensus 147 ~~ai~~~~~Ae~~~~a~~~--~Ae~~~~~~i~~A~aeae~~~~~Aea~a 193 (274)
.+.|..+...+-+.++... +|+.+++..+..|+.+|+.....|+.++
T Consensus 9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea 57 (198)
T PRK01558 9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEA 57 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 3444444444444444444444444333
No 43
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.90 E-value=2.9 Score=35.24 Aligned_cols=25 Identities=24% Similarity=0.084 Sum_probs=9.6
Q ss_pred HHHHhhcchHHHHHHhchhhHHHHH
Q 023977 173 LQIKRAEGEAESKYLAGLGIARQRQ 197 (274)
Q Consensus 173 ~~i~~A~aeae~~~~~Aea~a~a~~ 197 (274)
..+..|+.+|+..+..|+.+|+...
T Consensus 26 ~Ii~eA~~eAe~Ii~eA~~eAe~i~ 50 (198)
T PRK01558 26 EIILEAKEEAEEIIAKAEEEAKELK 50 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 44
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=88.80 E-value=3.3 Score=31.70 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023977 149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 188 (274)
Q Consensus 149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~ 188 (274)
-|..-+.||+++..-+..|+..+...+.+|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888889988888899998888887755
No 45
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=87.84 E-value=3.1 Score=33.84 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=54.2
Q ss_pred CceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh----c-cc
Q 023977 65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK----T-LI 137 (274)
Q Consensus 65 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~----v-~I 137 (274)
+....|.+.+.|++.|..... .+.. =.+.+++.+...+++.|.+++-+ +++++.+++++.|+. . .|
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~---el~~----~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~~V 148 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLE---ELEE----KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQVV 148 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHH---HHHH----hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCCee
Confidence 677888999999998843211 1111 13568899999999999999998 899999999999988 3 56
Q ss_pred cccccc
Q 023977 138 VDIEPD 143 (274)
Q Consensus 138 ~~i~~p 143 (274)
.||-|-
T Consensus 149 ~dV~fT 154 (159)
T COG1580 149 KDVLFT 154 (159)
T ss_pred EEEeee
Confidence 665543
No 46
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=83.72 E-value=9.3 Score=31.67 Aligned_cols=42 Identities=21% Similarity=0.064 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchh
Q 023977 150 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG 191 (274)
Q Consensus 150 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea 191 (274)
|-.++.++-++++....+++++++..+.+++++++..+..++
T Consensus 6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~ 47 (188)
T PRK02292 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDR 47 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555444443
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=83.43 E-value=1.2 Score=43.34 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCCcEEEecC
Q 023977 230 QYFDTMKEIGASSKTNSVFIPH 251 (274)
Q Consensus 230 ~~le~l~~~~~~~~~~~i~l~~ 251 (274)
+.|+++... +++..|+||.
T Consensus 80 ~~~~~~~~~---~~GdKI~LPp 98 (567)
T PLN03086 80 RIFEAVSFQ---GNGDKIKLPP 98 (567)
T ss_pred EEeeccccC---CCCCeEEcCH
Confidence 344544443 5778899995
No 48
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=83.20 E-value=2.1 Score=36.18 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=10.9
Q ss_pred hcchHHHHHHhchhhHHHHHHHHHH
Q 023977 178 AEGEAESKYLAGLGIARQRQAIVDG 202 (274)
Q Consensus 178 A~aeae~~~~~Aea~a~a~~~~a~a 202 (274)
|+.++++.+.+|+|++++.+++++|
T Consensus 156 A~~~~~a~i~~A~ge~~a~~~~aea 180 (215)
T cd03403 156 AEREKRAKIIEAEGERQAAILLAEA 180 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 49
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=82.99 E-value=2.5 Score=35.16 Aligned_cols=25 Identities=8% Similarity=-0.074 Sum_probs=19.6
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHH
Q 023977 182 AESKYLAGLGIARQRQAIVDGLRDS 206 (274)
Q Consensus 182 ae~~~~~Aea~a~a~~~~a~a~a~a 206 (274)
++..+.+|+++|++.+++|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3345677888999999999998875
No 50
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=82.27 E-value=30 Score=29.41 Aligned_cols=34 Identities=26% Similarity=0.134 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977 162 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 195 (274)
Q Consensus 162 a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a 195 (274)
..+..|+.+++..+..|+.+++..+..|+.+++.
T Consensus 31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ 64 (207)
T PRK01005 31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQ 64 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555444444443
No 51
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.87 E-value=11 Score=31.34 Aligned_cols=13 Identities=38% Similarity=0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 023977 161 LAANEKAEAEKIL 173 (274)
Q Consensus 161 ~a~~~~Ae~~~~~ 173 (274)
++....+++++++
T Consensus 28 ~~~~i~~ea~~~a 40 (188)
T PRK02292 28 EAEEIIAEAEADA 40 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 52
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=81.42 E-value=5.2 Score=36.50 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977 159 LRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 204 (274)
Q Consensus 159 ~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a 204 (274)
+++.-+..|++++ ..++-+++||+..+.|.|.+++.+-.++|++
T Consensus 301 nk~~~~~qaqAEA--~~irk~geAEA~~ieA~akaeaeqm~~ka~v 344 (428)
T KOG2668|consen 301 NKELYNKQAQAEA--ELIRKQGEAEAFAIEADAKAEAEQMAAKAEV 344 (428)
T ss_pred HHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333344444443 4455556666666666555555544444433
No 53
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=79.36 E-value=3.4 Score=35.35 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 023977 189 GLGIARQRQAIVDGLRDSVLAF 210 (274)
Q Consensus 189 Aea~a~a~~~~a~a~a~a~~~~ 210 (274)
|+-++.+..+.|||++++.+.+
T Consensus 203 AeQqk~aavIsAEGds~aA~li 224 (271)
T KOG3083|consen 203 AEQQKKAAVISAEGDSKAAELI 224 (271)
T ss_pred HhhhhhhheeecccchHHHHHH
Confidence 3333334444444444444333
No 54
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=79.15 E-value=5.7 Score=29.71 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHH
Q 023977 148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 194 (274)
Q Consensus 148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~ 194 (274)
+.|..-+.|+.++...+.+|..++...+..|+.+|+..+.....+++
T Consensus 4 ~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e 50 (105)
T PF03179_consen 4 DGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAE 50 (105)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888888888888777655544444
No 55
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=78.97 E-value=12 Score=28.60 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHH--HHHHHHHHHHHHhc
Q 023977 160 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAI--VDGLRDSVLAFSEN 213 (274)
Q Consensus 160 ~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~--a~a~a~a~~~~~~a 213 (274)
-.+....||.+++..+..|+..+...+..|+.+|..-+.. ++-+.+--+..++.
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~ 62 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKH 62 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888777777776655443 33344433333333
No 56
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=3.7 Score=35.22 Aligned_cols=41 Identities=44% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977 154 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 195 (274)
Q Consensus 154 ~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a 195 (274)
++|+| +.--..+|+.+++..+.+|+|||+++.+..+|.+..
T Consensus 202 QeAqR-A~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn 242 (290)
T KOG3090|consen 202 QEAQR-AKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN 242 (290)
T ss_pred HHHhh-hhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC
Confidence 34443 233455677888888999999999999998887653
No 57
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=77.80 E-value=22 Score=26.67 Aligned_cols=37 Identities=30% Similarity=0.261 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 023977 149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESK 185 (274)
Q Consensus 149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~ 185 (274)
.|...-.|+.+.+.....|+.+++..+..|+.+++..
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~ 40 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKI 40 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555665555555555555555555554444433
No 58
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=77.71 E-value=22 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 99 ~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
+.+++.+-..+++++.+++-+ +++.+.+++++.+++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~ 81 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINK 81 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHH
Confidence 467888888899999999997 788999999999886
No 59
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=77.65 E-value=8.1 Score=32.76 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh-
Q 023977 58 CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK- 134 (274)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~- 134 (274)
.++.|+||..+.+-..+.-+-. .-.+....|+......+...++..++++++. --+.|..+|...++.
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 3689999998887776643221 1123456788889999999999999999997 457888999988888
Q ss_pred -----ccccccc
Q 023977 135 -----TLIVDIE 141 (274)
Q Consensus 135 -----v~I~~i~ 141 (274)
|.|+.+.
T Consensus 171 yPlr~veIrKvk 182 (203)
T PRK04057 171 YPLRRVEIRKSK 182 (203)
T ss_pred cCcceEEEEEEE
Confidence 6666553
No 60
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=75.62 E-value=49 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023977 160 RLAANEKAEAEKILQIKRAEGEAESKYLAG 189 (274)
Q Consensus 160 ~~a~~~~Ae~~~~~~i~~A~aeae~~~~~A 189 (274)
++..+.+|+.+++..+..|+.+++..+.++
T Consensus 40 Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~ 69 (207)
T PRK01005 40 AKRIIAEAQEEAEKIIRSAEETADQKLKQG 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 61
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=71.12 E-value=39 Score=27.32 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 023977 224 DMVLVTQYFDTMK 236 (274)
Q Consensus 224 ~~~~~~~~le~l~ 236 (274)
...+..+|.+..+
T Consensus 128 av~iAsk~~~~~~ 140 (154)
T PRK06568 128 VIKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHHhc
Confidence 4455667777654
No 62
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=66.85 E-value=65 Score=25.81 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=4.3
Q ss_pred HHHHhcCHH
Q 023977 114 LDATFEQKN 122 (274)
Q Consensus 114 ~~el~~~R~ 122 (274)
+..++..|.
T Consensus 47 i~~~l~~R~ 55 (156)
T CHL00118 47 LLKVLDERK 55 (156)
T ss_pred HHHHHHHHH
Confidence 445555443
No 63
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=65.12 E-value=58 Score=24.66 Aligned_cols=39 Identities=28% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023977 151 NEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAG 189 (274)
Q Consensus 151 ~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~A 189 (274)
...-.|+......+.+|+-++...+..|+.++...+..|
T Consensus 10 ~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieea 48 (108)
T COG2811 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEA 48 (108)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555444444444444443333
No 64
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=64.93 E-value=49 Score=27.52 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=46.7
Q ss_pred CcccCCC--ceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh
Q 023977 59 ETKTKDN--VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK 134 (274)
Q Consensus 59 ~v~T~D~--~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~ 134 (274)
.+.++|. ....+.+++.|...++.... .. ..=.+.++..+...+++.+.+|+- +++++..+|++.++.
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~---EL----~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~ 161 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILN---EL----GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINS 161 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHH---HH----HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHH
Confidence 3444454 45567888888887643211 11 112345778888888999999999 888888888888887
No 65
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=64.88 E-value=71 Score=25.72 Aligned_cols=10 Identities=0% Similarity=0.195 Sum_probs=5.3
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++.+|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14471 32 PILGAVKERE 41 (164)
T ss_pred HHHHHHHHHH
Confidence 3555666554
No 66
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=64.65 E-value=44 Score=25.00 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=7.3
Q ss_pred HHHhhcchHHHHHHhch
Q 023977 174 QIKRAEGEAESKYLAGL 190 (274)
Q Consensus 174 ~i~~A~aeae~~~~~Ae 190 (274)
.+..|+.+++..+..|+
T Consensus 44 ii~eA~~eA~~ile~Ak 60 (103)
T PRK08404 44 IIKKAEEEAQKLIEKKK 60 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 67
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=63.87 E-value=56 Score=26.59 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.5
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++.+|.
T Consensus 46 Pi~~~l~~R~ 55 (167)
T PRK08475 46 PLKNFYKSRI 55 (167)
T ss_pred HHHHHHHHHH
Confidence 4556666554
No 68
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=63.76 E-value=62 Score=26.17 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.7
Q ss_pred CHHHHhcCH
Q 023977 113 DLDATFEQK 121 (274)
Q Consensus 113 t~~el~~~R 121 (274)
.+..++..|
T Consensus 28 PI~~~LeeR 36 (154)
T PRK06568 28 AILNSLDAK 36 (154)
T ss_pred HHHHHHHHH
Confidence 333444444
No 69
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=63.24 E-value=20 Score=30.18 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=48.9
Q ss_pred CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
++.|+||..+.|-..+.=+=. .-......|+......+.+.++..++++++. --+.++.+|...++.
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~ 175 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKK 175 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCT
T ss_pred EEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhcc
Confidence 678999987765544321111 1122346789999999999999999999997 567889999888887
No 70
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=63.21 E-value=82 Score=25.70 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=5.4
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++.+|.
T Consensus 42 pi~~~l~~R~ 51 (175)
T PRK14472 42 PILSALEERE 51 (175)
T ss_pred HHHHHHHHHH
Confidence 3556666553
No 71
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=62.61 E-value=80 Score=27.40 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977 166 KAEAEKILQIKRAEGEAESKYLAGLGIARQ 195 (274)
Q Consensus 166 ~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a 195 (274)
+|+..++..+..|+.++++.+..|+.+.+.
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~ 112 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQEALRR 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544433
No 72
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=62.58 E-value=90 Score=26.40 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=7.9
Q ss_pred CHHHHhcCHH-HHHHHH
Q 023977 113 DLDATFEQKN-DIAKAV 128 (274)
Q Consensus 113 t~~el~~~R~-~i~~~i 128 (274)
.+..++.+|. .|...+
T Consensus 77 pI~~vLe~R~~~I~~~L 93 (204)
T PRK09174 77 RIGGIIETRRDRIAQDL 93 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3556666553 344433
No 73
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=61.81 E-value=63 Score=25.88 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHh
Q 023977 166 KAEAEKILQIKRAEGEAESKYLA 188 (274)
Q Consensus 166 ~Ae~~~~~~i~~A~aeae~~~~~ 188 (274)
.|+.+++..+..|+.+++..+..
T Consensus 65 ~A~~ea~~ii~~A~~~a~~~~~~ 87 (159)
T PRK09173 65 EAEKEAADIVAAAEREAEALTAE 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 74
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=60.89 E-value=99 Score=26.11 Aligned_cols=8 Identities=0% Similarity=0.164 Sum_probs=4.0
Q ss_pred HHHHhcCH
Q 023977 114 LDATFEQK 121 (274)
Q Consensus 114 ~~el~~~R 121 (274)
+..++.+|
T Consensus 73 i~~~L~~R 80 (205)
T PRK06231 73 TQRFLNKR 80 (205)
T ss_pred HHHHHHHH
Confidence 44555544
No 75
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=60.76 E-value=30 Score=25.72 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977 163 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 204 (274)
Q Consensus 163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a 204 (274)
.+..||.++...+..|+.++...+..|..+|+..+.....+.
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777666554433333
No 76
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=60.58 E-value=27 Score=29.22 Aligned_cols=44 Identities=27% Similarity=0.152 Sum_probs=23.7
Q ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023977 142 PDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 187 (274)
Q Consensus 142 ~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~ 187 (274)
+|..+..+ +.+.+.++.+.-+..|+.++++.+..|+.++++.+.
T Consensus 16 ~~~~ii~~--e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 16 LPEPIIRR--EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred CccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 233344444455556666666666666666666665
No 77
>PRK09098 type III secretion system protein HrpB; Validated
Probab=60.31 E-value=41 Score=29.12 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhchhhH
Q 023977 163 ANEKAEAEKILQIKRAEGEAESKYLAGLGIA 193 (274)
Q Consensus 163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a 193 (274)
.+.+|+.+++..+..|+.+|+..+..|+.+.
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665554433
No 78
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=59.84 E-value=85 Score=24.75 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.3
Q ss_pred HHHHhcCHH
Q 023977 114 LDATFEQKN 122 (274)
Q Consensus 114 ~~el~~~R~ 122 (274)
+..++.+|.
T Consensus 32 i~~~l~~R~ 40 (141)
T PRK08476 32 LLKFMDNRN 40 (141)
T ss_pred HHHHHHHHH
Confidence 344555453
No 79
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=59.71 E-value=93 Score=25.20 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=7.2
Q ss_pred HHHHhcCHH-HHHHHH
Q 023977 114 LDATFEQKN-DIAKAV 128 (274)
Q Consensus 114 ~~el~~~R~-~i~~~i 128 (274)
+..++..|. .|...+
T Consensus 35 i~~~le~R~~~I~~~l 50 (167)
T PRK14475 35 LAGALDAYAAKIQAEL 50 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455666553 344333
No 80
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=59.20 E-value=98 Score=25.27 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=6.4
Q ss_pred CCHHHHhcCHH
Q 023977 112 LDLDATFEQKN 122 (274)
Q Consensus 112 ~t~~el~~~R~ 122 (274)
-.+..++.+|.
T Consensus 41 ~pi~~~l~~R~ 51 (173)
T PRK13453 41 GPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHH
Confidence 34566666554
No 81
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.95 E-value=1e+02 Score=26.92 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHhchhh
Q 023977 166 KAEAEKILQIKRAEGEAESKYLAGLGI 192 (274)
Q Consensus 166 ~Ae~~~~~~i~~A~aeae~~~~~Aea~ 192 (274)
+|+.+++..+.+|+.++++.+..++..
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ 109 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQ 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555443
No 82
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=58.88 E-value=54 Score=29.23 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHHhhcchHHHHHHhchhhHHH
Q 023977 173 LQIKRAEGEAESKYLAGLGIARQ 195 (274)
Q Consensus 173 ~~i~~A~aeae~~~~~Aea~a~a 195 (274)
+...+||+++.+.+++|+|+|.-
T Consensus 184 ~~~~~ae~~~~~~~~~a~~~~~~ 206 (280)
T cd03406 184 VVEKEAETERKKAVIEAEKVAQV 206 (280)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhH
Confidence 55566666666666666665553
No 83
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=58.53 E-value=55 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.158 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHH
Q 023977 159 LRLAANEKAEAEKILQIKRAEGEAE 183 (274)
Q Consensus 159 ~~~a~~~~Ae~~~~~~i~~A~aeae 183 (274)
++...+..|+.++...+..|+.+|+
T Consensus 29 e~~~~i~eAr~eareiieeaE~eA~ 53 (108)
T COG2811 29 EAEQIIKEAREEAREIIEEAEEEAE 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444443
No 84
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=58.34 E-value=78 Score=25.81 Aligned_cols=16 Identities=0% Similarity=0.241 Sum_probs=8.2
Q ss_pred CHHHHhcCHH-HHHHHH
Q 023977 113 DLDATFEQKN-DIAKAV 128 (274)
Q Consensus 113 t~~el~~~R~-~i~~~i 128 (274)
.+..++.+|. .|...+
T Consensus 40 pi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 40 VILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4566666554 344333
No 85
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=58.03 E-value=64 Score=27.46 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=53.9
Q ss_pred CCcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh-
Q 023977 58 CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK- 134 (274)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~- 134 (274)
.++.|+||..+.|.+.+.=+= + --......|+......+.+..+..++++++. --+.+..+|.+.-++
T Consensus 108 ~dVkTkDGy~~RV~~~~~T~~------r---a~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkI 178 (214)
T COG1890 108 VDVKTKDGYVLRVKAMAFTRR------R---AKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKI 178 (214)
T ss_pred EEEEecCCcEEEEEEEEEEeh------h---cccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhc
Confidence 478999999888877653211 0 0123456789999999999999999999997 336777777777666
Q ss_pred -----ccccccc
Q 023977 135 -----TLIVDIE 141 (274)
Q Consensus 135 -----v~I~~i~ 141 (274)
|.|+.+.
T Consensus 179 yPLr~veIrK~k 190 (214)
T COG1890 179 YPLRKVEIRKSK 190 (214)
T ss_pred ccchheEEEeee
Confidence 6665543
No 86
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.76 E-value=81 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=10.2
Q ss_pred CCCCHHHHhcCHH-HHHHHH
Q 023977 110 PKLDLDATFEQKN-DIAKAV 128 (274)
Q Consensus 110 ~~~t~~el~~~R~-~i~~~i 128 (274)
.--.+..++.+|. .|...+
T Consensus 40 l~kpI~~~l~~R~~~I~~~l 59 (174)
T PRK07352 40 GRGFLGKILEERREAILQAL 59 (174)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 3344677777664 344333
No 87
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=57.50 E-value=1e+02 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.027 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhcchHHHHHHhchh
Q 023977 167 AEAEKILQIKRAEGEAESKYLAGLG 191 (274)
Q Consensus 167 Ae~~~~~~i~~A~aeae~~~~~Aea 191 (274)
|+..++..+..|+.++++.+..|+.
T Consensus 95 a~~~~~~~~~~A~~ea~~~~~~a~~ 119 (173)
T PRK13460 95 ALKLKNKLLEETNNEVKAQKDQAVK 119 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 88
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=56.02 E-value=1.1e+02 Score=25.08 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=10.2
Q ss_pred CCCHHHHhcCHH-HHHHHH
Q 023977 111 KLDLDATFEQKN-DIAKAV 128 (274)
Q Consensus 111 ~~t~~el~~~R~-~i~~~i 128 (274)
--.+..++.+|. .|...+
T Consensus 46 ~kPI~~~l~~R~~~I~~~l 64 (184)
T CHL00019 46 KGVLSDLLDNRKQTILNTI 64 (184)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 356777777664 344433
No 89
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=55.56 E-value=93 Score=25.38 Aligned_cols=7 Identities=43% Similarity=0.430 Sum_probs=2.5
Q ss_pred hcchHHH
Q 023977 178 AEGEAES 184 (274)
Q Consensus 178 A~aeae~ 184 (274)
|+.++++
T Consensus 108 A~~ea~~ 114 (175)
T PRK14472 108 AHTEAKK 114 (175)
T ss_pred HHHHHHH
Confidence 3333333
No 90
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=55.09 E-value=80 Score=25.27 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=5.2
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++.+|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 4555566553
No 91
>PTZ00491 major vault protein; Provisional
Probab=54.20 E-value=55 Score=33.65 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=7.3
Q ss_pred EEecCCceEEEEec
Q 023977 8 IQVDQSTVAIKETF 21 (274)
Q Consensus 8 ~~V~~ge~gVv~~f 21 (274)
+...|.|.--+..+
T Consensus 492 v~L~pdE~ftvlsL 505 (850)
T PTZ00491 492 VMLEPDEEFTVLSL 505 (850)
T ss_pred EEecCCCceEEEEe
Confidence 44555555555444
No 92
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=53.83 E-value=68 Score=25.33 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 99 ~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
+.+++.+-..+++.+.+++.+ +|+.+.+++++.++.
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~ 115 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNE 115 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHH
Confidence 558888889999999999988 899999999888887
No 93
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=52.45 E-value=1.1e+02 Score=24.49 Aligned_cols=10 Identities=0% Similarity=0.112 Sum_probs=5.3
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++..|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14473 32 PVLNLLNERT 41 (164)
T ss_pred HHHHHHHHHH
Confidence 3455566554
No 94
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.26 E-value=1.1e+02 Score=25.28 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=6.2
Q ss_pred CHHHHhcCHHH
Q 023977 113 DLDATFEQKND 123 (274)
Q Consensus 113 t~~el~~~R~~ 123 (274)
.+..++.+|..
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45566665543
No 95
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=51.60 E-value=1.2e+02 Score=23.83 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.8
Q ss_pred HHHhcCH
Q 023977 115 DATFEQK 121 (274)
Q Consensus 115 ~el~~~R 121 (274)
..++.+|
T Consensus 21 ~~~l~~R 27 (147)
T TIGR01144 21 AKAIETR 27 (147)
T ss_pred HHHHHHH
Confidence 3344433
No 96
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=51.08 E-value=48 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023977 155 AAARLRLAANEKAEAEKILQIKRAEG 180 (274)
Q Consensus 155 ~Ae~~~~a~~~~Ae~~~~~~i~~A~a 180 (274)
.|++++++-+..|+.+++..+..|+.
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~~a~e 63 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLEQAYE 63 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566655555553433
No 97
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=50.82 E-value=1e+02 Score=24.37 Aligned_cols=21 Identities=19% Similarity=-0.108 Sum_probs=8.2
Q ss_pred HHHHHHHhhcchHHHHHHhch
Q 023977 170 EKILQIKRAEGEAESKYLAGL 190 (274)
Q Consensus 170 ~~~~~i~~A~aeae~~~~~Ae 190 (274)
.++..+..|+.+++..+..|+
T Consensus 86 ~~~~~~~~a~~ea~~~~~~a~ 106 (156)
T PRK05759 86 IIEEAKAEAEAEAARIKAQAQ 106 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433333
No 98
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.58 E-value=98 Score=25.50 Aligned_cols=21 Identities=24% Similarity=-0.007 Sum_probs=8.5
Q ss_pred HHHHHHHhhcchHHHHHHhch
Q 023977 170 EKILQIKRAEGEAESKYLAGL 190 (274)
Q Consensus 170 ~~~~~i~~A~aeae~~~~~Ae 190 (274)
.++..+..|+.++++.+..|+
T Consensus 106 ~~~~il~~A~~ea~~~~~~a~ 126 (184)
T CHL00019 106 EKENLINQAKEDLERLENYKN 126 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 99
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.99 E-value=1.2e+02 Score=28.96 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh
Q 023977 225 MVLVTQYFDTMKEIG 239 (274)
Q Consensus 225 ~~~~~~~le~l~~~~ 239 (274)
.-+..++++.+..+.
T Consensus 144 ~~lId~~i~~l~~~~ 158 (445)
T PRK13428 144 SATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHhhccC
Confidence 344567787777764
No 100
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=49.40 E-value=58 Score=24.54 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023977 150 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 188 (274)
Q Consensus 150 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~ 188 (274)
|..-+.||.++...+.+|+..+...+.+|+-||+..+..
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~ 46 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677877777777788888888888888888877654
No 101
>PRK09098 type III secretion system protein HrpB; Validated
Probab=49.32 E-value=46 Score=28.83 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023977 232 FDTMKEI 238 (274)
Q Consensus 232 le~l~~~ 238 (274)
.+++...
T Consensus 140 ~~al~~~ 146 (233)
T PRK09098 140 AQTLERV 146 (233)
T ss_pred HHHHHHH
Confidence 3444444
No 102
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.19 E-value=2.4e+02 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=10.1
Q ss_pred HHHhhcchHHHHHHhchhhHH
Q 023977 174 QIKRAEGEAESKYLAGLGIAR 194 (274)
Q Consensus 174 ~i~~A~aeae~~~~~Aea~a~ 194 (274)
+..+|++|+|..+.+|.|+++
T Consensus 208 E~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 208 EMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555444444443
No 103
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.85 E-value=68 Score=27.60 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=38.4
Q ss_pred cCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcC-CCCHHHHhcCHHHHHHHHHHH-Hhh---cc
Q 023977 62 TKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVP-KLDLDATFEQKNDIAKAVEEE-LEK---TL 136 (274)
Q Consensus 62 T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~-~~t~~el~~~R~~i~~~i~~~-l~~---v~ 136 (274)
..||..|...+.+..|-+ ..+.+ +-..-+..+...- ..+-+.+| +....+++.+-+.|++.+.+. |.. +.
T Consensus 140 am~gievkakaritvran---i~rlv-ggageetviarvg-egivstigss~~h~~vlenpd~isktvl~kgld~gtafe 214 (328)
T COG4864 140 AMNGIEVKAKARITVRAN---IERLV-GGAGEETVIARVG-EGIVSTIGSSDEHTKVLENPDSISKTVLEKGLDSGTAFE 214 (328)
T ss_pred eccceEEEEEEEEEehhh---HHHHh-CCCCchhhhhhhc-cceeeccCCCcchhhHhcCccHHHHHHHHccCCCCceeE
Confidence 346655554444333322 22222 2223333444433 33344444 456778999888888877543 554 44
Q ss_pred cccccc
Q 023977 137 IVDIEP 142 (274)
Q Consensus 137 I~~i~~ 142 (274)
|.+|+.
T Consensus 215 ilsidi 220 (328)
T COG4864 215 ILSIDI 220 (328)
T ss_pred EEEeee
Confidence 444443
No 104
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=48.66 E-value=1.3e+02 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 98 ~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.+.++.
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~ 164 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNE 164 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3557888888889999999998 788999999999887
No 105
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=48.52 E-value=69 Score=22.83 Aligned_cols=29 Identities=31% Similarity=0.219 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 023977 156 AARLRLAANEKAEAEKILQIKRAEGEAES 184 (274)
Q Consensus 156 Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~ 184 (274)
++.+.+..+..|+.++...+..|+.+++.
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~ 35 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEARE 35 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 106
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.74 E-value=1.3e+02 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=7.8
Q ss_pred CHHHHhcCHH-HHHHHH
Q 023977 113 DLDATFEQKN-DIAKAV 128 (274)
Q Consensus 113 t~~el~~~R~-~i~~~i 128 (274)
.+..++.+|. .|...+
T Consensus 29 Pi~~~l~~R~~~I~~~l 45 (246)
T TIGR03321 29 PILDAMDAREKKIAGEL 45 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4555666553 344333
No 107
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=47.67 E-value=1.3e+02 Score=23.30 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.7
Q ss_pred HHHHhcCHH
Q 023977 114 LDATFEQKN 122 (274)
Q Consensus 114 ~~el~~~R~ 122 (274)
+..++.+|.
T Consensus 30 i~~~l~~R~ 38 (140)
T PRK07353 30 VGKVVEERE 38 (140)
T ss_pred HHHHHHHHH
Confidence 455555443
No 108
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=47.27 E-value=1.5e+02 Score=24.43 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=9.0
Q ss_pred HHHHhcCHH-HHHHHHH
Q 023977 114 LDATFEQKN-DIAKAVE 129 (274)
Q Consensus 114 ~~el~~~R~-~i~~~i~ 129 (274)
+..++.+|. .|...+.
T Consensus 52 v~~~L~~R~~~I~~~l~ 68 (184)
T PRK13455 52 IGGMLDKRAEGIRSELE 68 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 567777664 3444443
No 109
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=45.97 E-value=1.5e+02 Score=23.44 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHhcCH
Q 023977 114 LDATFEQK 121 (274)
Q Consensus 114 ~~el~~~R 121 (274)
+..++.+|
T Consensus 29 i~~~l~~R 36 (156)
T PRK05759 29 IMKALEER 36 (156)
T ss_pred HHHHHHHH
Confidence 44455544
No 110
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=45.69 E-value=88 Score=25.46 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 99 ~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
+.+++.+-..+++.+.+++.+ ++..+.+++.+.++.
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~ 148 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNV 148 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHh
Confidence 456777777788999999987 788899998888887
No 111
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.11 E-value=1.6e+02 Score=23.69 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 99 ~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
+.+++.+-..++..+.+++.+ +++.+.+++++.++.
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~ 140 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQ 140 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHH
Confidence 347777777889999999987 788899988888886
No 112
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.01 E-value=1.9e+02 Score=23.11 Aligned_cols=9 Identities=56% Similarity=0.612 Sum_probs=3.2
Q ss_pred HHhhcchHH
Q 023977 175 IKRAEGEAE 183 (274)
Q Consensus 175 i~~A~aeae 183 (274)
+..|+.+++
T Consensus 95 l~~A~~ea~ 103 (164)
T PRK14473 95 IAQARREAE 103 (164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 113
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=39.63 E-value=1.4e+02 Score=26.29 Aligned_cols=33 Identities=15% Similarity=-0.064 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 023977 154 NAAARLRLAANEKAEAEKILQIKRAEGEAESKY 186 (274)
Q Consensus 154 ~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~ 186 (274)
..+..++.+.+.+|+.+.+..+..|+.+++..+
T Consensus 84 ~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~ 116 (281)
T PRK06669 84 LKKTDEASSIIEKLQMQIEREQEEWEEELERLI 116 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 114
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.50 E-value=2.6e+02 Score=24.38 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 023977 228 VTQYFDTMKE 237 (274)
Q Consensus 228 ~~~~le~l~~ 237 (274)
..++++.+..
T Consensus 150 id~~i~~l~~ 159 (250)
T PRK14474 150 VGIFIARLEH 159 (250)
T ss_pred HHHHHHHhcc
Confidence 3445555543
No 115
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.71 E-value=2.2e+02 Score=23.10 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 98 ~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
.+.+++.+-..+++.+.+++-+ +++.+.+++.+.++.
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~ 148 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQE 148 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3467888888999999999997 788888887777665
No 116
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=35.14 E-value=2.3e+02 Score=22.54 Aligned_cols=8 Identities=0% Similarity=0.443 Sum_probs=3.7
Q ss_pred HHHHhcCH
Q 023977 114 LDATFEQK 121 (274)
Q Consensus 114 ~~el~~~R 121 (274)
+..++.+|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 44455544
No 117
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=34.78 E-value=2.2e+02 Score=27.14 Aligned_cols=10 Identities=0% Similarity=0.126 Sum_probs=5.6
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++.+|.
T Consensus 25 Pi~~~l~~R~ 34 (445)
T PRK13428 25 PVRRLMAARQ 34 (445)
T ss_pred HHHHHHHHHH
Confidence 3566666554
No 118
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=33.82 E-value=2.6e+02 Score=22.66 Aligned_cols=13 Identities=15% Similarity=0.251 Sum_probs=5.4
Q ss_pred HHHHhhcchHHHH
Q 023977 173 LQIKRAEGEAESK 185 (274)
Q Consensus 173 ~~i~~A~aeae~~ 185 (274)
..+..|+.++...
T Consensus 69 ~~L~~Ar~eA~~I 81 (155)
T PRK06569 69 EEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 119
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=32.68 E-value=2.6e+02 Score=22.47 Aligned_cols=9 Identities=0% Similarity=0.276 Sum_probs=4.0
Q ss_pred CHHHHhcCH
Q 023977 113 DLDATFEQK 121 (274)
Q Consensus 113 t~~el~~~R 121 (274)
.+..++.+|
T Consensus 30 pi~~~l~~R 38 (161)
T COG0711 30 PILKALDER 38 (161)
T ss_pred HHHHHHHHH
Confidence 344444444
No 120
>PF07628 DUF1589: Protein of unknown function (DUF1589); InterPro: IPR011480 This is a family of short hypothetical proteins found in Rhodopirellula baltica.
Probab=32.37 E-value=23 Score=27.87 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=13.3
Q ss_pred CceeeEeCCcceeecCCCc
Q 023977 22 GKFDDVLEPGCHCLPWCLG 40 (274)
Q Consensus 22 Gk~~~~l~pGl~~~~P~~i 40 (274)
++..+.++|||||. |||.
T Consensus 80 ~~s~RqVepGL~~~-p~pt 97 (164)
T PF07628_consen 80 AHSPRQVEPGLRFW-PFPT 97 (164)
T ss_pred CCCccccCCcceeC-CCCC
Confidence 34457889999985 8853
No 121
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis]
Probab=31.77 E-value=48 Score=25.51 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=25.2
Q ss_pred eEEEecCCceEEEEecCceeeEe--CCcceeec
Q 023977 6 GCIQVDQSTVAIKETFGKFDDVL--EPGCHCLP 36 (274)
Q Consensus 6 ~~~~V~~ge~gVv~~fGk~~~~l--~pGl~~~~ 36 (274)
|+..|+++...++..||+--... -||..|+.
T Consensus 90 cln~ieendevlv~gfgrkg~avgdipgvrfkv 122 (143)
T KOG1749|consen 90 CLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122 (143)
T ss_pred ceeeeccCCeeeeeccCccCccccCCCceEEEE
Confidence 67789999999999999865544 59999874
No 122
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=29.84 E-value=3.9e+02 Score=23.52 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023977 233 DTMKEI 238 (274)
Q Consensus 233 e~l~~~ 238 (274)
+++..+
T Consensus 197 ~al~~l 202 (281)
T PRK06669 197 ELLKEV 202 (281)
T ss_pred HHHHHc
Confidence 334443
No 123
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.93 E-value=95 Score=24.53 Aligned_cols=62 Identities=10% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh
Q 023977 64 DNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK 134 (274)
Q Consensus 64 D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~ 134 (274)
|+..+.+.+++. +.|+.....+ .-. .+.+++.+-..+++.+.+++-+ +|+.+.+++.+.++.
T Consensus 61 ~~~ylk~~i~l~--~~~~~~~~el-~~~------~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~ 124 (142)
T PRK07718 61 SGNFIRIQFKIE--TDSKKAKEEL-EKR------DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINN 124 (142)
T ss_pred CCCEEEEEEEEE--ECCHHHHHHH-Hhc------ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHH
Confidence 456666666664 4454321111 111 2357777788888999999997 789999999999877
No 124
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.88 E-value=38 Score=25.92 Aligned_cols=28 Identities=21% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977 177 RAEGEAESKYLAGLGIARQRQAIVDGLR 204 (274)
Q Consensus 177 ~A~aeae~~~~~Aea~a~a~~~~a~a~a 204 (274)
.|+.+++..+..|+.+|......|..++
T Consensus 82 ~A~~eA~~i~~~A~~~a~~i~~~A~~~~ 109 (131)
T PF05103_consen 82 EAEEEAEEIIEEAQKEAEEIIEEARAEA 109 (131)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 125
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=27.51 E-value=3.3e+02 Score=22.00 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=4.8
Q ss_pred CHHHHhcCHH
Q 023977 113 DLDATFEQKN 122 (274)
Q Consensus 113 t~~el~~~R~ 122 (274)
.+..++..|.
T Consensus 34 pI~~iLe~R~ 43 (155)
T PRK06569 34 KAEEIFNNRQ 43 (155)
T ss_pred HHHHHHHHHH
Confidence 4445555443
No 126
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=26.92 E-value=2.8e+02 Score=21.89 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=3.6
Q ss_pred HHHHHHHhhc
Q 023977 170 EKILQIKRAE 179 (274)
Q Consensus 170 ~~~~~i~~A~ 179 (274)
+++..+..|+
T Consensus 25 ~a~~i~~~A~ 34 (166)
T TIGR02499 25 RAEAILADAE 34 (166)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 127
>PHA00448 hypothetical protein
Probab=26.92 E-value=2.1e+02 Score=19.61 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=4.9
Q ss_pred hcchHHHHHHhc
Q 023977 178 AEGEAESKYLAG 189 (274)
Q Consensus 178 A~aeae~~~~~A 189 (274)
|+.++++.+..|
T Consensus 27 Ar~~A~~A~~la 38 (70)
T PHA00448 27 ARKDATRARRLA 38 (70)
T ss_pred HHHhHHHHHHHH
Confidence 344444444333
No 128
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=24.10 E-value=3.4e+02 Score=23.60 Aligned_cols=6 Identities=0% Similarity=0.135 Sum_probs=2.6
Q ss_pred cccccc
Q 023977 136 LIVDIE 141 (274)
Q Consensus 136 ~I~~i~ 141 (274)
.|+.+.
T Consensus 21 ~~~~~~ 26 (255)
T TIGR03825 21 PLRQVT 26 (255)
T ss_pred eeeeec
Confidence 344444
No 129
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=21.91 E-value=3.4e+02 Score=20.16 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhhccccccccchHHHHHhHHHHH
Q 023977 103 DVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINA 155 (274)
Q Consensus 103 ~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~v~I~~i~~p~~i~~ai~~~~~ 155 (274)
..+|..+|.=+...|..--..+....... .......+|+.+.+.+...+.
T Consensus 23 ~~Vr~~lG~GS~~ti~~~l~~w~~~~~~~---~~~~~~~lP~~l~~~~~~~~~ 72 (120)
T PF11740_consen 23 RAVRERLGGGSMSTISKHLKEWREEREAQ---VSEAAPDLPEALQDALAELMA 72 (120)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhcc---ccccccCCChhHHHHHHHHHH
Confidence 45666666444444433211221111111 335667889999887776543
No 130
>PRK15322 invasion protein OrgB; Provisional
Probab=20.84 E-value=5.3e+02 Score=21.94 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023977 162 AANEKAEAEKILQIKRAEGEAESKYLAG 189 (274)
Q Consensus 162 a~~~~Ae~~~~~~i~~A~aeae~~~~~A 189 (274)
.-..+|+.++...+.+|+.++|+.+..|
T Consensus 16 ~l~~qA~~kA~~ii~qA~~eaE~ir~~A 43 (210)
T PRK15322 16 RLEQQARRRAKRILRQAEEEAETLRMYA 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666777777777666555
Done!