Query 023977
Match_columns 274
No_of_seqs 175 out of 1537
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 2E-27 6.7E-32 198.5 14.0 167 40-245 3-181 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 3.1E-24 1.1E-28 169.3 8.8 119 34-156 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.2E-19 4E-24 144.8 1.8 117 40-157 4-139 (143)
4 2rpb_A Hypothetical membrane p 99.7 6.5E-18 2.2E-22 129.1 7.8 98 46-145 4-113 (113)
5 2zuo_A MVP, major vault protei 98.4 1.1E-05 3.8E-10 78.5 18.4 114 8-124 460-598 (861)
6 3v6i_B V-type ATP synthase, su 83.5 10 0.00035 27.2 8.8 29 163-191 21-49 (105)
7 2zuo_A MVP, major vault protei 82.9 6.5 0.00022 38.8 9.9 16 177-192 725-740 (861)
8 3u5c_B RP10A, 40S ribosomal pr 81.4 1.4 4.8E-05 37.4 4.1 83 59-141 126-216 (255)
9 2xzm_4 40S ribosomal protein S 78.0 1.8 6.2E-05 36.8 3.8 82 59-140 129-221 (265)
10 3v6i_A V-type ATP synthase sub 74.6 15 0.00051 29.2 8.4 20 166-185 21-40 (187)
11 3v6i_B V-type ATP synthase, su 72.4 9.9 0.00034 27.3 5.8 30 155-184 24-53 (105)
12 4efa_G V-type proton ATPase su 70.6 18 0.00061 26.9 7.2 44 148-191 10-53 (119)
13 2k6i_A Uncharacterized protein 65.5 4.7 0.00016 25.8 2.6 20 167-186 24-43 (56)
14 3bk6_A PH stomatin; archaea, t 59.9 10 0.00034 30.2 4.4 26 188-213 127-152 (188)
15 3v6i_A V-type ATP synthase sub 59.8 42 0.0014 26.5 8.2 15 244-260 117-131 (187)
16 3j20_A 30S ribosomal protein S 57.6 18 0.00062 29.3 5.5 74 59-141 108-189 (198)
17 2kk7_A V-type ATP synthase sub 53.3 34 0.0012 21.2 5.1 13 175-187 27-39 (52)
18 4efa_G V-type proton ATPase su 40.6 77 0.0026 23.3 6.2 38 161-198 12-49 (119)
19 4efa_E V-type proton ATPase su 34.3 1.9E+02 0.0064 23.5 8.6 6 233-238 127-132 (233)
20 2b5u_A Colicin E3; high resolu 23.0 3.2E+02 0.011 25.2 8.2 28 135-162 285-312 (551)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.95 E-value=2e-27 Score=198.47 Aligned_cols=167 Identities=24% Similarity=0.239 Sum_probs=130.1
Q ss_pred cceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHh
Q 023977 40 GSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF 118 (274)
Q Consensus 40 i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~ 118 (274)
++++ .++|+|.++++++. .++|+||++|.|+++++|||.|| .++++.+.|+...+.+++++.+|+++|++++++++
T Consensus 3 i~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell 79 (188)
T 3bk6_A 3 FEKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL 79 (188)
T ss_dssp EEEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred eEEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 7888 57999999999987 89999999999999999999984 46788999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023977 119 EQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 187 (274)
Q Consensus 119 ~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~ 187 (274)
++|++|+..|++.|++ |.|++|.||+++.++|++++.|++++++.+.+|||++++ .++
T Consensus 80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~~~ 148 (188)
T 3bk6_A 80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------AEK 148 (188)
T ss_dssp HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHH
Confidence 9999999999999988 899999999999999999999888877766666665543 322
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCc
Q 023977 188 AGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTN 245 (274)
Q Consensus 188 ~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~ 245 (274)
.|+| .+.++. +|. ++.+||||++.+++.+++++
T Consensus 149 ~a~a---------------~~~~~~------~~~----~l~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 149 LREA---------------AEIISE------HPM----ALQLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHHH---------------HHHHHH------CTT----HHHHHHTTC-----------
T ss_pred HHHH---------------HHHHHh------CHH----HHHHHHHHHHHHHhcCCCCc
Confidence 2221 122322 233 35578999999998755443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=3.1e-24 Score=169.29 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=93.7
Q ss_pred eecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCC
Q 023977 34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL 112 (274)
Q Consensus 34 ~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~ 112 (274)
++.|| ++++. ++|+|.++++++. +++|+|+++|.||++++|||.| +.+++|++.|++..+.++++++||+++|++
T Consensus 3 l~~P~-id~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPS-TDSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCc-eeEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 67899 99995 7999999999987 8999999999999999999999 568899999999999999999999999999
Q ss_pred CHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHH
Q 023977 113 DLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAA 156 (274)
Q Consensus 113 t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~A 156 (274)
++++++++|++|+..+++.+++ |+|++++||+++.+||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999987 9999999999999999887765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.75 E-value=1.2e-19 Score=144.78 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=99.7
Q ss_pred cceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEc-cchH-HHHhccc-----cChHHHHHHHHHHHHHHHcCC
Q 023977 40 GSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL-AEKA-SDAFYKL-----SNTRSQIQAYVFDVIRASVPK 111 (274)
Q Consensus 40 i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~-d~~~-~~~~~~~-----~~~~~~l~~~~~~~lR~~i~~ 111 (274)
++++. ++|+|++++++++ +++|+||++|.||++++|||. ||.. ..++.++ ...+..+.++++++||+++|+
T Consensus 4 i~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 4 GSSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 68885 7999999999998 899999999999999999998 4432 1122221 224566888999999999999
Q ss_pred CCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHH
Q 023977 112 LDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAA 157 (274)
Q Consensus 112 ~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae 157 (274)
+++++++++|++|+..|.+.+++ |+|+||+||+++.+||++++.||
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 99999999999999999999988 99999999999999999876665
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.73 E-value=6.5e-18 Score=129.12 Aligned_cols=98 Identities=32% Similarity=0.432 Sum_probs=91.7
Q ss_pred eeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHH
Q 023977 46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124 (274)
Q Consensus 46 ~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i 124 (274)
++|+|.++++++. +++|+|+++|.++++++|||.|| .++++++.+++..|.+++++++|+++|++++++++++|++|
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDP--VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCT--TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 5899999999998 99999999999999999999985 47888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-----------ccccccccchH
Q 023977 125 AKAVEEELEK-----------TLIVDIEPDEH 145 (274)
Q Consensus 125 ~~~i~~~l~~-----------v~I~~i~~p~~ 145 (274)
+..+++.|++ |.|+++.||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999987 89999999963
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.44 E-value=1.1e-05 Score=78.53 Aligned_cols=114 Identities=13% Similarity=0.152 Sum_probs=81.7
Q ss_pred EEecCCceEEEEec--CceeeEeCCcceeecCCCcceeeEeeceeE---------EE--eecC-------CCcccCCCce
Q 023977 8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRV---------QQ--LDVR-------CETKTKDNVF 67 (274)
Q Consensus 8 ~~V~~ge~gVv~~f--Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~---------~~--~~~~-------~~v~T~D~~~ 67 (274)
|.||.+.+.-++-+ |+..-+.||-+.+.-|- +.+. .+++.. .. +... ..+-|+|...
T Consensus 460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~ft-vlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhAr 536 (861)
T 2zuo_A 460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQFT-VLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHAR 536 (861)
T ss_dssp EECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEEC-CEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCE
T ss_pred EEcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccEE-EEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceE
Confidence 56888888888876 44445578888666554 3331 232221 11 1121 1578999999
Q ss_pred EEEEEEEEEEEc--cc---hHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHH
Q 023977 68 VNVVASVQYRAL--AE---KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124 (274)
Q Consensus 68 v~v~~~v~yrI~--d~---~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i 124 (274)
+.+..+.+|+.. |+ .....+|.+.|+-.-+...+.+.+|..+++.+++++..+-..|
T Consensus 537 L~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~i 598 (861)
T 2zuo_A 537 LQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARI 598 (861)
T ss_dssp EEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred EEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHH
Confidence 999999999985 32 2235689999999999999999999999999999998754444
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=83.52 E-value=10 Score=27.20 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhchh
Q 023977 163 ANEKAEAEKILQIKRAEGEAESKYLAGLG 191 (274)
Q Consensus 163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea 191 (274)
.+..|..++...+..|++++.+....|+.
T Consensus 21 ~lE~Ar~eA~~~v~~AEAeA~ril~eAe~ 49 (105)
T 3v6i_B 21 RLEAAKKEAEERVKRAEAEAKALLEEAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555554444444443
No 7
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=82.92 E-value=6.5 Score=38.76 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=7.1
Q ss_pred hhcchHHHHHHhchhh
Q 023977 177 RAEGEAESKYLAGLGI 192 (274)
Q Consensus 177 ~A~aeae~~~~~Aea~ 192 (274)
.|++.||+.+++++|.
T Consensus 725 eA~a~aea~~Ie~ea~ 740 (861)
T 2zuo_A 725 EAESRAEAARIEGEGS 740 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3444444444444443
No 8
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=81.43 E-value=1.4 Score=37.38 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh--
Q 023977 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK-- 134 (274)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~-- 134 (274)
++.|.||..+.|-...+-+-.+.+..+..|.-......|+......+...++..++++++. --+.|..+|...++.
T Consensus 126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~Iy 205 (255)
T 3u5c_B 126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIF 205 (255)
T ss_dssp EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTC
T ss_pred EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhcccc
Confidence 7899999999887776543322222233444445567899999999999999999999998 357899999999988
Q ss_pred ----ccccccc
Q 023977 135 ----TLIVDIE 141 (274)
Q Consensus 135 ----v~I~~i~ 141 (274)
|.|+.+.
T Consensus 206 PL~~V~IrKvK 216 (255)
T 3u5c_B 206 PLQNIHVRKVK 216 (255)
T ss_dssp CCEEEECCCEE
T ss_pred ccceEEEEEEE
Confidence 7777754
No 9
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=78.01 E-value=1.8 Score=36.81 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=60.7
Q ss_pred CcccCCCceEEEEEEEEEEEcc---chHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHh
Q 023977 59 ETKTKDNVFVNVVASVQYRALA---EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELE 133 (274)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d---~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~ 133 (274)
++.|.||..+.|-..++-+-.. .+..+..|.-......|+......+...++..++++++. --+.|..+|...++
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k 208 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK 208 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence 6889999999887765543332 122233444445567889999999999999999999997 34678889998888
Q ss_pred h------cccccc
Q 023977 134 K------TLIVDI 140 (274)
Q Consensus 134 ~------v~I~~i 140 (274)
. |.|+.+
T Consensus 209 ~IyPL~~V~IrKv 221 (265)
T 2xzm_4 209 NIFPLQNITIRKV 221 (265)
T ss_dssp TTCCEEEEEEEEE
T ss_pred hccccceEEEEEE
Confidence 7 777764
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=74.65 E-value=15 Score=29.20 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcchHHHH
Q 023977 166 KAEAEKILQIKRAEGEAESK 185 (274)
Q Consensus 166 ~Ae~~~~~~i~~A~aeae~~ 185 (274)
+|+.++...+..|+.+|++.
T Consensus 21 eA~~~a~~I~~eA~~eA~~~ 40 (187)
T 3v6i_A 21 EAEAKAEAVKREAEEKAKAL 40 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=72.42 E-value=9.9 Score=27.28 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 023977 155 AAARLRLAANEKAEAEKILQIKRAEGEAES 184 (274)
Q Consensus 155 ~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~ 184 (274)
.|.++.++.+..||+++...+..|+..+..
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~ 53 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKAKA 53 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666777777776666555554443
No 12
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=70.59 E-value=18 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchh
Q 023977 148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG 191 (274)
Q Consensus 148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea 191 (274)
+-|..-+.||+++...+.+|+..+...+.+|+.+|++.+..=..
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~ 53 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKI 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888888888888887654333
No 13
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=65.47 E-value=4.7 Score=25.78 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhcchHHHHH
Q 023977 167 AEAEKILQIKRAEGEAESKY 186 (274)
Q Consensus 167 Ae~~~~~~i~~A~aeae~~~ 186 (274)
||.++...+..|+.+++..+
T Consensus 24 AE~~A~~iVeeA~~ea~~ii 43 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIK 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444434433333333333
No 14
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=59.89 E-value=10 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=17.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977 188 AGLGIARQRQAIVDGLRDSVLAFSEN 213 (274)
Q Consensus 188 ~Aea~a~a~~~~a~a~a~a~~~~~~a 213 (274)
+|+.++++..++|+|++++.+.++++
T Consensus 127 ~Aere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 127 EAERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455666777788888877777654
No 15
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=59.77 E-value=42 Score=26.45 Aligned_cols=15 Identities=7% Similarity=0.333 Sum_probs=6.2
Q ss_pred CcEEEecCCCCchhhHH
Q 023977 244 TNSVFIPHGPGAVKDIA 260 (274)
Q Consensus 244 ~~~i~l~~~~~~~~~~~ 260 (274)
..++++ ++.....+.
T Consensus 117 ~~~vv~--~~~D~~~v~ 131 (187)
T 3v6i_A 117 AKALVA--NPEDLPHLE 131 (187)
T ss_dssp CCEEEE--CTTTHHHHH
T ss_pred CCeEEE--CHHHHHHHH
Confidence 344443 344444333
No 16
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.63 E-value=18 Score=29.33 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=55.1
Q ss_pred CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcC--HHHHHHHHHHHHhh--
Q 023977 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEK-- 134 (274)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~--R~~i~~~i~~~l~~-- 134 (274)
++.|+||..+.+-..+.-+- +.-......|+......+...++..++++++.. -+.++.+|...++.
T Consensus 108 dVkT~DGy~lRvf~i~fT~k---------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~Iy 178 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIY 178 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS---------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHS
T ss_pred EEEecCCCEEEEEEEEEEec---------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccc
Confidence 68899998887766644211 012234567888899999999999999999983 47899999999888
Q ss_pred ----ccccccc
Q 023977 135 ----TLIVDIE 141 (274)
Q Consensus 135 ----v~I~~i~ 141 (274)
|.|+.+.
T Consensus 179 Pl~~V~IrKvK 189 (198)
T 3j20_A 179 PLRKAEIRKIK 189 (198)
T ss_dssp CEEEEEEEEEE
T ss_pred ccceEEEEEEE
Confidence 6666554
No 17
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=53.25 E-value=34 Score=21.25 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=4.8
Q ss_pred HHhhcchHHHHHH
Q 023977 175 IKRAEGEAESKYL 187 (274)
Q Consensus 175 i~~A~aeae~~~~ 187 (274)
+..|+.+++..+.
T Consensus 27 l~eA~~eA~~Ii~ 39 (52)
T 2kk7_A 27 ISEAEAEKAKILE 39 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 18
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=40.59 E-value=77 Score=23.35 Aligned_cols=38 Identities=18% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHH
Q 023977 161 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQA 198 (274)
Q Consensus 161 ~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~ 198 (274)
.+....||.++...+..|+..+...+..|+.+|..-+.
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe 49 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777766666655443
No 19
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=34.26 E-value=1.9e+02 Score=23.48 Aligned_cols=6 Identities=0% Similarity=0.446 Sum_probs=2.4
Q ss_pred HHHHHH
Q 023977 233 DTMKEI 238 (274)
Q Consensus 233 e~l~~~ 238 (274)
+++..+
T Consensus 127 eal~~l 132 (233)
T 4efa_E 127 EALLKL 132 (233)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 333443
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=22.97 E-value=3.2e+02 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=20.7
Q ss_pred ccccccccchHHHHHhHHHHHHHHHHHH
Q 023977 135 TLIVDIEPDEHVKRAMNEINAAARLRLA 162 (274)
Q Consensus 135 v~I~~i~~p~~i~~ai~~~~~Ae~~~~a 162 (274)
|.+.+|-.|.++.+-.++..+++|+-..
T Consensus 285 ISvs~ilt~~elkqrqeee~r~~qew~~ 312 (551)
T 2b5u_A 285 VSVSDVLSPDQVKQRQDEENRRQQEWDA 312 (551)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCHHHHHHHHHHHHHHHHHhhh
Confidence 6778888888888877777666666543
Done!