Query 023979
Match_columns 274
No_of_seqs 142 out of 1176
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00954 S_locus_glycop: S-loc 100.0 1.3E-29 2.8E-34 193.9 11.7 109 51-160 1-110 (110)
2 PF08276 PAN_2: PAN-like domai 99.7 3.1E-18 6.7E-23 118.6 6.2 66 178-244 1-66 (66)
3 cd01098 PAN_AP_plant Plant PAN 99.6 1.2E-15 2.7E-20 110.4 7.9 80 175-259 2-84 (84)
4 cd00129 PAN_APPLE PAN/APPLE-li 99.6 6.9E-15 1.5E-19 105.2 5.8 72 178-258 5-80 (80)
5 smart00473 PAN_AP divergent su 98.8 3.6E-08 7.8E-13 69.6 7.8 72 182-257 4-77 (78)
6 cd01100 APPLE_Factor_XI_like S 97.8 3E-05 6.4E-10 54.4 4.2 50 187-240 9-58 (73)
7 smart00223 APPLE APPLE domain. 95.8 0.018 3.8E-07 41.0 4.5 52 187-239 6-57 (79)
8 smart00108 B_lectin Bulb-type 95.7 0.054 1.2E-06 41.1 7.3 93 12-111 7-102 (114)
9 cd00028 B_lectin Bulb-type man 95.2 0.087 1.9E-06 40.1 6.8 94 12-112 7-104 (116)
10 PF00024 PAN_1: PAN domain Thi 95.1 0.056 1.2E-06 37.6 5.0 57 183-243 3-60 (79)
11 PF14295 PAN_4: PAN domain; PD 94.4 0.037 8E-07 35.2 2.5 35 203-237 15-51 (51)
12 PF08277 PAN_3: PAN-like domai 90.7 1.1 2.4E-05 30.6 6.0 41 202-247 18-59 (71)
13 PF07645 EGF_CA: Calcium-bindi 90.5 0.17 3.8E-06 31.1 1.6 32 128-159 3-36 (42)
14 smart00605 CW CW domain. 90.0 1.9 4.1E-05 31.4 7.1 56 202-261 20-77 (94)
15 cd00053 EGF Epidermal growth f 87.2 0.57 1.2E-05 26.7 2.2 29 130-158 2-31 (36)
16 PF01453 B_lectin: D-mannose b 86.9 4.1 8.8E-05 30.9 7.4 25 27-53 19-44 (114)
17 PF01683 EB: EB module; Inter 85.3 0.94 2E-05 29.1 2.7 34 124-160 16-49 (52)
18 smart00179 EGF_CA Calcium-bind 83.4 1.1 2.4E-05 26.2 2.3 30 128-157 3-33 (39)
19 PF12661 hEGF: Human growth fa 82.7 0.45 9.8E-06 21.7 0.2 10 149-158 1-10 (13)
20 cd01099 PAN_AP_HGF Subfamily o 82.3 4.1 8.9E-05 28.7 5.2 36 203-241 24-61 (80)
21 PF07974 EGF_2: EGF-like domai 79.5 1.9 4.1E-05 24.9 2.1 24 134-158 6-29 (32)
22 PF09064 Tme5_EGF_like: Thromb 79.1 1.1 2.4E-05 26.2 1.1 19 141-159 11-29 (34)
23 cd00054 EGF_CA Calcium-binding 78.8 2.1 4.6E-05 24.6 2.3 31 128-158 3-34 (38)
24 PF12947 EGF_3: EGF domain; I 77.6 0.75 1.6E-05 27.4 0.1 25 133-157 5-30 (36)
25 smart00108 B_lectin Bulb-type 76.7 4 8.6E-05 30.7 3.9 39 16-56 42-82 (114)
26 PF12662 cEGF: Complement Clr- 74.3 2 4.4E-05 23.1 1.2 11 149-159 3-13 (24)
27 PF00008 EGF: EGF-like domain 73.2 1.8 4E-05 24.8 0.9 25 134-158 4-30 (32)
28 smart00181 EGF Epidermal growt 68.9 4.9 0.00011 22.9 2.2 24 134-158 6-30 (35)
29 cd00028 B_lectin Bulb-type man 63.3 14 0.0003 27.8 4.3 40 16-57 43-84 (116)
30 PF14670 FXa_inhibition: Coagu 44.9 8.7 0.00019 22.8 0.4 15 146-160 17-31 (36)
31 PF01453 B_lectin: D-mannose b 41.3 44 0.00095 25.1 3.9 35 17-53 41-78 (114)
32 PF12946 EGF_MSP1_1: MSP1 EGF 39.3 12 0.00027 22.4 0.4 26 134-159 5-32 (37)
33 PF06247 Plasmod_Pvs28: Plasmo 39.1 14 0.0003 30.6 0.8 87 126-221 38-146 (197)
34 KOG4289 Cadherin EGF LAG seven 38.9 19 0.00041 38.9 1.9 42 133-174 1244-1286(2531)
35 PF07932 DAP_C: D-aminopeptida 35.6 54 0.0012 23.9 3.3 27 10-36 48-74 (97)
36 KOG1214 Nidogen and related ba 33.7 33 0.00072 35.0 2.5 29 128-157 828-857 (1289)
37 KOG1214 Nidogen and related ba 32.7 33 0.00072 35.0 2.4 38 133-175 741-779 (1289)
38 PF00954 S_locus_glycop: S-loc 31.9 2.1E+02 0.0045 21.0 7.1 40 94-139 56-95 (110)
39 PHA02887 EGF-like protein; Pro 29.9 61 0.0013 24.8 2.9 34 124-158 80-118 (126)
40 PF11403 Yeast_MT: Yeast metal 25.6 50 0.0011 19.2 1.4 19 134-156 12-30 (40)
41 PF09081 DUF1921: Domain of un 23.6 1.1E+02 0.0024 19.4 2.7 21 23-44 30-50 (51)
42 smart00765 MANEC The MANEC dom 20.0 1.6E+02 0.0034 21.5 3.5 35 203-237 37-72 (93)
No 1
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.96 E-value=1.3e-29 Score=193.86 Aligned_cols=109 Identities=44% Similarity=1.031 Sum_probs=101.5
Q ss_pred EEcCCCCCceeecc-ccCCCCeeeEEEEecCceEEEEEEecCCCcEEEEEEeecCCeEEEEEEcCCCCceEEEEeecCCC
Q 023979 51 HRSGPWNGLRFSAS-SLRPNPVFNFGFVSNEVELYYKFDMRDKAAFQRIVMNQTLYLVQRFTWNKATQSWELYSNVPRDL 129 (274)
Q Consensus 51 w~sg~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~L~~dG~l~~~y~w~~~~~~W~~~~~~p~~~ 129 (274)
||+|+|+|..|+++ +|.....+.+.|+.++++.+++|.+.+.+.+.|++||++|++ +++.|.+..+.|.+.|.+|.|.
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l-~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQL-QRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEE-EEEEEecCCCcEEEEEEecccC
Confidence 89999999999998 777666788899999999999999888888999999999999 9999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCccccCCCceecC
Q 023979 130 CDTYALCGAYGICIISDMPVCQCLKGFKPKS 160 (274)
Q Consensus 130 C~~~~~CG~~g~C~~~~~~~C~C~~GF~~~~ 160 (274)
||+|+.||+||+|+.+..+.|+||+||+|++
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 9999999999999887788999999999974
No 2
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.74 E-value=3.1e-18 Score=118.59 Aligned_cols=66 Identities=44% Similarity=0.964 Sum_probs=56.0
Q ss_pred cCCCCceEEEeeecCCCCccceeeccCChHHHHHHHhcCCceEEEEeccccCCCceeEeecccccee
Q 023979 178 YSRQDGFIKFTAMKLPDATLSWVSKSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWFGELIDM 244 (274)
Q Consensus 178 C~~~~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~~~l~~~ 244 (274)
|+.+|+|++|++|++|++....+..++++++|+++||+||||+||+|.+.+ ++++|++|.++|+|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~-~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLS-GGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccC-CCCEEEEEcCEeecC
Confidence 444689999999999998776655668999999999999999999998543 456899999999874
No 3
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.63 E-value=1.2e-15 Score=110.38 Aligned_cols=80 Identities=41% Similarity=0.895 Sum_probs=64.6
Q ss_pred ccccCCC---CceEEEeeecCCCCccceeeccCChHHHHHHHhcCCceEEEEeccccCCCceeEeeccccceeEEcCCCC
Q 023979 175 SLNYSRQ---DGFIKFTAMKLPDATLSWVSKSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWFGELIDMRDFPDGG 251 (274)
Q Consensus 175 ~l~C~~~---~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~~~l~~~~~~~~~~ 251 (274)
+++|.+. +.|++++++++|+..... ..+++++|++.||+||+|+||+|.+ ++++|++|..++.+.+.....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~---~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN---GSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC---CCCeEEEEeceecceEeecCCC
Confidence 4567543 589999999999876543 5678999999999999999999974 2457999999999877655456
Q ss_pred ceEEEEee
Q 023979 252 QDLYIRMS 259 (274)
Q Consensus 252 ~~~yikv~ 259 (274)
.++||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 89999985
No 4
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.55 E-value=6.9e-15 Score=105.25 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=60.2
Q ss_pred cCCCCceEEEeeecCCCCccceeeccCChHHHHHHHhc---CCceEEEEeccccCCCceeEeecccc-ceeEEcCCCCce
Q 023979 178 YSRQDGFIKFTAMKLPDATLSWVSKSMNLNECREKCLD---NSSCMAYTNSDIRGEGSGCAMWFGEL-IDMRDFPDGGQD 253 (274)
Q Consensus 178 C~~~~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~~~~~~~~g~~C~~w~~~l-~~~~~~~~~~~~ 253 (274)
|..+..|+++.+|++|++.. +++++|+++|++ ||||+||+|.+. +.+|++|.++| .+++.....|.+
T Consensus 5 ~~~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~---~~gC~~W~~~l~~d~~~~~~~g~~ 75 (80)
T cd00129 5 CKSAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKA---RKQCLWFPFNSMSGVRKEFSHGFD 75 (80)
T ss_pred eecCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCC---CCCeEEecCcchhhHHhccCCCce
Confidence 33456799999999998644 478999999999 999999999742 45899999999 998877677899
Q ss_pred EEEEe
Q 023979 254 LYIRM 258 (274)
Q Consensus 254 ~yikv 258 (274)
+|||.
T Consensus 76 Ly~r~ 80 (80)
T cd00129 76 LYENK 80 (80)
T ss_pred eEeEC
Confidence 99983
No 5
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.78 E-value=3.6e-08 Score=69.60 Aligned_cols=72 Identities=39% Similarity=0.768 Sum_probs=55.5
Q ss_pred CceEEEeeecCCCCccceeeccCChHHHHHHHhc-CCceEEEEeccccCCCceeEeec-cccceeEEcCCCCceEEEE
Q 023979 182 DGFIKFTAMKLPDATLSWVSKSMNLNECREKCLD-NSSCMAYTNSDIRGEGSGCAMWF-GELIDMRDFPDGGQDLYIR 257 (274)
Q Consensus 182 ~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~~~~~~~~g~~C~~w~-~~l~~~~~~~~~~~~~yik 257 (274)
..|..++++.+++..... ....++++|++.|++ +|+|.||.|.. .+.+|++|. +++.+.......+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN---GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC---CCCEEEEeeCCccccceecccCCceeEEe
Confidence 468889999988654432 346689999999999 99999999973 245799999 7788776555556677776
No 6
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.80 E-value=3e-05 Score=54.43 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=36.4
Q ss_pred EeeecCCCCccceeeccCChHHHHHHHhcCCceEEEEeccccCCCceeEeeccc
Q 023979 187 FTAMKLPDATLSWVSKSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWFGE 240 (274)
Q Consensus 187 l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~~~ 240 (274)
+++++++..+.... ...+.++|++.|+.+++|.||+|.. ....|+++...
T Consensus 9 ~~~~~~~g~d~~~~-~~~s~~~Cq~~C~~~~~C~afT~~~---~~~~C~lk~~~ 58 (73)
T cd01100 9 GSNVDFRGGDLSTV-FASSAEQCQAACTADPGCLAFTYNT---KSKKCFLKSSE 58 (73)
T ss_pred cCCCccccCCccee-ecCCHHHHHHHcCCCCCceEEEEEC---CCCeEEcccCC
Confidence 35666665544433 2457899999999999999999973 23469997654
No 7
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=95.82 E-value=0.018 Score=41.00 Aligned_cols=52 Identities=13% Similarity=0.341 Sum_probs=37.4
Q ss_pred EeeecCCCCccceeeccCChHHHHHHHhcCCceEEEEeccccCCCceeEeecc
Q 023979 187 FTAMKLPDATLSWVSKSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWFG 239 (274)
Q Consensus 187 l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~~ 239 (274)
+++++++..+.... ...+.++|++.|..+=.|.||+|.........|+++..
T Consensus 6 ~~~~df~G~Dl~~~-~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTV-YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeee-ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 45667766655543 34578999999999999999999753222227999754
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=95.75 E-value=0.054 Score=41.12 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=49.4
Q ss_pred ceEEEEecCCCCCCCeeEEEEEecCCCcEEEEEcCC--eeEEEcCCCCCceeecc-ccCCCCeeeEEEEecCceEEEEEE
Q 023979 12 DRRITSWKSPDDPSPGNFIWAVERQDNPELIMWKGS--RKFHRSGPWNGLRFSAS-SLRPNPVFNFGFVSNEVELYYKFD 88 (274)
Q Consensus 12 ~~~L~Sw~s~~dps~G~y~l~~~~~g~~~l~~~~~~--~~Yw~sg~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (274)
++.|+|-. ...+-|.|++.++.++++ ++++.. .++|.+.......-... .+...+.+ .+.+.++.....-.
T Consensus 7 ~~~l~s~~--~~f~~G~~~~~~q~dgnl--V~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnL--vl~~~~g~~vW~S~ 80 (114)
T smart00108 7 GQTLVSGN--SLFELGFFTLIMQNDYNL--ILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNL--VLYDGDGRVVWSSN 80 (114)
T ss_pred CCEEecCC--CcEeeeccccCCCCCEEE--EEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCE--EEEeCCCCEEEEec
Confidence 35566643 333789999999988774 445543 68999876422111011 22211111 12222222211111
Q ss_pred ecCCCcEEEEEEeecCCeEEEEE
Q 023979 89 MRDKAAFQRIVMNQTLYLVQRFT 111 (274)
Q Consensus 89 ~~~~~~~~rl~L~~dG~l~~~y~ 111 (274)
........+++|..||+| .+|.
T Consensus 81 t~~~~~~~~~~L~ddGnl-vl~~ 102 (114)
T smart00108 81 TTGANGNYVLVLLDDGNL-VIYD 102 (114)
T ss_pred ccCCCCceEEEEeCCCCE-EEEC
Confidence 111234578999999999 9885
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=95.19 E-value=0.087 Score=40.10 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=49.5
Q ss_pred ceEEEEecCCCCCCCeeEEEEEec-CCCcEEEEEcC--CeeEEEcCCCCCceeec-cccCCCCeeeEEEEecCceEEEEE
Q 023979 12 DRRITSWKSPDDPSPGNFIWAVER-QDNPELIMWKG--SRKFHRSGPWNGLRFSA-SSLRPNPVFNFGFVSNEVELYYKF 87 (274)
Q Consensus 12 ~~~L~Sw~s~~dps~G~y~l~~~~-~g~~~l~~~~~--~~~Yw~sg~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (274)
+..|+|- ....+.|.|++.++. ++++ +++.. ..++|.+..-....... ..+...+.+ .+.+.++.....-
T Consensus 7 ~~~l~s~--~~~f~~G~~~~~~q~~dgnl--v~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnL--vl~~~~g~~vW~S 80 (116)
T cd00028 7 GQTLVSS--GSLFELGFFKLIMQSRDYNL--ILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNL--VIYDGSGTVVWSS 80 (116)
T ss_pred CCEEEeC--CCcEEEecccCCCCCCeEEE--EEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCe--EEEcCCCcEEEEe
Confidence 4567773 344568999999987 7764 34444 36899887632101011 122211111 1222222221111
Q ss_pred EecCCCcEEEEEEeecCCeEEEEEE
Q 023979 88 DMRDKAAFQRIVMNQTLYLVQRFTW 112 (274)
Q Consensus 88 ~~~~~~~~~rl~L~~dG~l~~~y~w 112 (274)
.........+++|..||+| .+|.-
T Consensus 81 ~~~~~~~~~~~~L~ddGnl-vl~~~ 104 (116)
T cd00028 81 NTTRVNGNYVLVLLDDGNL-VLYDS 104 (116)
T ss_pred cccCCCCceEEEEeCCCCE-EEECC
Confidence 1111234579999999999 98863
No 10
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=95.05 E-value=0.056 Score=37.56 Aligned_cols=57 Identities=16% Similarity=0.440 Sum_probs=41.4
Q ss_pred ceEEEeeecCCCCccceeeccCChHHHHHHHhcCCc-eEEEEeccccCCCceeEeeccccce
Q 023979 183 GFIKFTAMKLPDATLSWVSKSMNLNECREKCLDNSS-CMAYTNSDIRGEGSGCAMWFGELID 243 (274)
Q Consensus 183 ~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~~~~~~~~g~~C~~w~~~l~~ 243 (274)
.|..+++..+........ ...++++|.+.|+.+=. |.+|.|.. ....|.+.......
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDP---SSKTCYLSSSDRSS 60 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEET---TTTEEEEECSSSSS
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEEC---CCCEEEEcCCCCCc
Confidence 477788877766444333 34489999999999999 99999974 23469997654443
No 11
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=94.42 E-value=0.037 Score=35.22 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=18.0
Q ss_pred cCChHHHHHHHhcCCceEEEEecccc--CCCceeEee
Q 023979 203 SMNLNECREKCLDNSSCMAYTNSDIR--GEGSGCAMW 237 (274)
Q Consensus 203 ~~~~~~C~~~Cl~nCsC~a~~~~~~~--~~g~~C~~w 237 (274)
..+.++|++.|..+=.|.+|.|.... .....|+|+
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred CCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 45789999999999999999997410 122348763
No 12
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=90.70 E-value=1.1 Score=30.59 Aligned_cols=41 Identities=15% Similarity=0.522 Sum_probs=31.7
Q ss_pred ccCChHHHHHHHhcCCceEEEEeccccCCCceeEeec-cccceeEEc
Q 023979 202 KSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWF-GELIDMRDF 247 (274)
Q Consensus 202 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~-~~l~~~~~~ 247 (274)
...+.++|-+.|..+-.|.++.+. ...|.++. +++..+++.
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~-----~~~C~~y~~~~i~~v~~~ 59 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD-----SGKCYLYNYGSISTVQKT 59 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC-----CCCEEEEEcCCEEEEEEe
Confidence 456789999999999999999885 24799975 555555554
No 13
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=90.54 E-value=0.17 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=24.9
Q ss_pred CCCCCC-CCCCCCcccccC-CCCccccCCCceec
Q 023979 128 DLCDTY-ALCGAYGICIIS-DMPVCQCLKGFKPK 159 (274)
Q Consensus 128 ~~C~~~-~~CG~~g~C~~~-~~~~C~C~~GF~~~ 159 (274)
|.|... ..|..++.|... +.-.|.|++||...
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 677774 479999999754 45679999999844
No 14
>smart00605 CW CW domain.
Probab=90.04 E-value=1.9 Score=31.42 Aligned_cols=56 Identities=18% Similarity=0.602 Sum_probs=40.0
Q ss_pred ccCChHHHHHHHhcCCceEEEEeccccCCCceeEeec-cccceeEEcCC-CCceEEEEeecC
Q 023979 202 KSMNLNECREKCLDNSSCMAYTNSDIRGEGSGCAMWF-GELIDMRDFPD-GGQDLYIRMSAS 261 (274)
Q Consensus 202 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~g~~C~~w~-~~l~~~~~~~~-~~~~~yikv~~~ 261 (274)
...+.++|...|..+..|+.+... ....|.++. +.+..+++... .+..+=+|+..+
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~----~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~~ 77 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGN----SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTD 77 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecC----CCCceEEEEcCCeEEEEEccCCCCcEEEEEEeCC
Confidence 356789999999999999987664 124798875 45666766543 456677777543
No 15
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=87.21 E-value=0.57 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.651 Sum_probs=21.1
Q ss_pred CCCCCCCCCCcccccC-CCCccccCCCcee
Q 023979 130 CDTYALCGAYGICIIS-DMPVCQCLKGFKP 158 (274)
Q Consensus 130 C~~~~~CG~~g~C~~~-~~~~C~C~~GF~~ 158 (274)
|.....|..++.|... ....|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 3434678888899754 3578999999953
No 16
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=86.93 E-value=4.1 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=19.2
Q ss_pred eeEEEEEecCCCcEEEEEcCC-eeEEEc
Q 023979 27 GNFIWAVERQDNPELIMWKGS-RKFHRS 53 (274)
Q Consensus 27 G~y~l~~~~~g~~~l~~~~~~-~~Yw~s 53 (274)
|.|+|.|+.||+++ +++.. .++|.+
T Consensus 19 ~~~~L~l~~dGnLv--l~~~~~~~iWss 44 (114)
T PF01453_consen 19 GNYTLILQSDGNLV--LYDSNGSVIWSS 44 (114)
T ss_dssp TTEEEEEETTSEEE--EEETTTEEEEE-
T ss_pred ccccceECCCCeEE--EEcCCCCEEEEe
Confidence 78999999999854 45654 789987
No 17
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=85.32 E-value=0.94 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.604 Sum_probs=27.7
Q ss_pred eecCCCCCCCCCCCCCcccccCCCCccccCCCceecC
Q 023979 124 NVPRDLCDTYALCGAYGICIISDMPVCQCLKGFKPKS 160 (274)
Q Consensus 124 ~~p~~~C~~~~~CG~~g~C~~~~~~~C~C~~GF~~~~ 160 (274)
..|-+.|....-|-.++.|. ...|.|++||.+..
T Consensus 16 ~~~g~~C~~~~qC~~~s~C~---~g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGESCESDEQCIGGSVCV---NGRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCCcCCCCCcCEEc---CCEeECCCCCEecC
Confidence 34567899999999999995 46899999998764
No 18
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=83.37 E-value=1.1 Score=26.23 Aligned_cols=30 Identities=27% Similarity=0.675 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCcccccC-CCCccccCCCce
Q 023979 128 DLCDTYALCGAYGICIIS-DMPVCQCLKGFK 157 (274)
Q Consensus 128 ~~C~~~~~CG~~g~C~~~-~~~~C~C~~GF~ 157 (274)
+.|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 456554568888889754 345799999996
No 19
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=82.67 E-value=0.45 Score=21.71 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=7.1
Q ss_pred ccccCCCcee
Q 023979 149 VCQCLKGFKP 158 (274)
Q Consensus 149 ~C~C~~GF~~ 158 (274)
.|.|++||+-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4899999963
No 20
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=82.34 E-value=4.1 Score=28.68 Aligned_cols=36 Identities=22% Similarity=0.537 Sum_probs=28.0
Q ss_pred cCChHHHHHHHhc--CCceEEEEeccccCCCceeEeecccc
Q 023979 203 SMNLNECREKCLD--NSSCMAYTNSDIRGEGSGCAMWFGEL 241 (274)
Q Consensus 203 ~~~~~~C~~~Cl~--nCsC~a~~~~~~~~~g~~C~~w~~~l 241 (274)
..++++|.+.|++ +=.|.++.|.. ....|.+-..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~---~~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNY---KSKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEc---CCCEEEEeCCCc
Confidence 4689999999999 89999999964 234699854443
No 21
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=79.46 E-value=1.9 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.767 Sum_probs=18.6
Q ss_pred CCCCCCcccccCCCCccccCCCcee
Q 023979 134 ALCGAYGICIISDMPVCQCLKGFKP 158 (274)
Q Consensus 134 ~~CG~~g~C~~~~~~~C~C~~GF~~ 158 (274)
.+|..+|.|+.. ...|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 478889999643 468999999863
No 22
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=79.15 E-value=1.1 Score=26.17 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=13.8
Q ss_pred ccccCCCCccccCCCceec
Q 023979 141 ICIISDMPVCQCLKGFKPK 159 (274)
Q Consensus 141 ~C~~~~~~~C~C~~GF~~~ 159 (274)
.|+.+....|.||.||-..
T Consensus 11 ~CDpn~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYILD 29 (34)
T ss_pred ccCCCCCCceeCCCceEec
Confidence 4555556689999999653
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=78.77 E-value=2.1 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCcccccC-CCCccccCCCcee
Q 023979 128 DLCDTYALCGAYGICIIS-DMPVCQCLKGFKP 158 (274)
Q Consensus 128 ~~C~~~~~CG~~g~C~~~-~~~~C~C~~GF~~ 158 (274)
+.|.....|...+.|... ....|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 456543568777889754 3457999999853
No 24
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=77.60 E-value=0.75 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.561 Sum_probs=17.3
Q ss_pred CCCCCCCcccccC-CCCccccCCCce
Q 023979 133 YALCGAYGICIIS-DMPVCQCLKGFK 157 (274)
Q Consensus 133 ~~~CG~~g~C~~~-~~~~C~C~~GF~ 157 (274)
.+-|.++..|... ....|.|.+||.
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCc
Confidence 3568889999865 356799999996
No 25
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=76.68 E-value=4 Score=30.71 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=26.6
Q ss_pred EEecCCCC-CCCeeEEEEEecCCCcEEEEEcC-CeeEEEcCCC
Q 023979 16 TSWKSPDD-PSPGNFIWAVERQDNPELIMWKG-SRKFHRSGPW 56 (274)
Q Consensus 16 ~Sw~s~~d-ps~G~y~l~~~~~g~~~l~~~~~-~~~Yw~sg~w 56 (274)
.=|.+.++ |..+.++|.|+.+|+++ +++. +.+.|.+++-
T Consensus 42 ~vW~snt~~~~~~~~~l~l~~dGnLv--l~~~~g~~vW~S~t~ 82 (114)
T smart00108 42 VVWVANRDNPVSDSCTLTLQSDGNLV--LYDGDGRVVWSSNTT 82 (114)
T ss_pred EEEECCCCCCCCCCEEEEEeCCCCEE--EEeCCCCEEEEeccc
Confidence 44766654 44455899999999754 4454 5688998874
No 26
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=74.28 E-value=2 Score=23.11 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=9.5
Q ss_pred ccccCCCceec
Q 023979 149 VCQCLKGFKPK 159 (274)
Q Consensus 149 ~C~C~~GF~~~ 159 (274)
.|.|++||...
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 59999999865
No 27
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=73.22 E-value=1.8 Score=24.81 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=18.7
Q ss_pred CCCCCCcccccC--CCCccccCCCcee
Q 023979 134 ALCGAYGICIIS--DMPVCQCLKGFKP 158 (274)
Q Consensus 134 ~~CG~~g~C~~~--~~~~C~C~~GF~~ 158 (274)
..|...|.|... ....|.|++||.-
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEES
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCcc
Confidence 367788888753 3567999999963
No 28
>smart00181 EGF Epidermal growth factor-like domain.
Probab=68.89 E-value=4.9 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=17.4
Q ss_pred CCCCCCcccccC-CCCccccCCCcee
Q 023979 134 ALCGAYGICIIS-DMPVCQCLKGFKP 158 (274)
Q Consensus 134 ~~CG~~g~C~~~-~~~~C~C~~GF~~ 158 (274)
..|... .|... ....|.|++||..
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78654 4678999999964
No 29
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=63.25 E-value=14 Score=27.79 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEecCCCCC-CCeeEEEEEecCCCcEEEEEcC-CeeEEEcCCCC
Q 023979 16 TSWKSPDDP-SPGNFIWAVERQDNPELIMWKG-SRKFHRSGPWN 57 (274)
Q Consensus 16 ~Sw~s~~dp-s~G~y~l~~~~~g~~~l~~~~~-~~~Yw~sg~w~ 57 (274)
.-|.+.++. .....+|.|+.+|++ ++++. ..+.|.+++-.
T Consensus 43 ~vW~snt~~~~~~~~~l~l~~dGnL--vl~~~~g~~vW~S~~~~ 84 (116)
T cd00028 43 VVWVANRDNPSGSSCTLTLQSDGNL--VIYDGSGTVVWSSNTTR 84 (116)
T ss_pred EEEECCCCCCCCCCEEEEEecCCCe--EEEcCCCcEEEEecccC
Confidence 457776543 456688999999975 45563 56899988753
No 30
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=44.88 E-value=8.7 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=10.5
Q ss_pred CCCccccCCCceecC
Q 023979 146 DMPVCQCLKGFKPKS 160 (274)
Q Consensus 146 ~~~~C~C~~GF~~~~ 160 (274)
....|+|++||....
T Consensus 17 g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 17 GSYRCSCPPGYKLAE 31 (36)
T ss_dssp TSEEEE-STTEEE-T
T ss_pred CceEeECCCCCEECc
Confidence 457899999998764
No 31
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=41.28 E-value=44 Score=25.13 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=22.4
Q ss_pred EecCCCCCCC--eeEEEEEecCCCcEEEEEc-CCeeEEEc
Q 023979 17 SWKSPDDPSP--GNFIWAVERQDNPELIMWK-GSRKFHRS 53 (274)
Q Consensus 17 Sw~s~~dps~--G~y~l~~~~~g~~~l~~~~-~~~~Yw~s 53 (274)
-|.+...... ....+.|+.+|++++ ++ ...+.|.|
T Consensus 41 iWss~~t~~~~~~~~~~~L~~~GNlvl--~d~~~~~lW~S 78 (114)
T PF01453_consen 41 IWSSNNTSGRGNSGCYLVLQDDGNLVL--YDSSGNVLWQS 78 (114)
T ss_dssp EEE--S-TTSS-SSEEEEEETTSEEEE--EETTSEEEEES
T ss_pred EEEecccCCccccCeEEEEeCCCCEEE--EeecceEEEee
Confidence 5666322233 378899999998644 45 56789987
No 32
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=39.27 E-value=12 Score=22.35 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=16.4
Q ss_pred CCCCCCcccccC--CCCccccCCCceec
Q 023979 134 ALCGAYGICIIS--DMPVCQCLKGFKPK 159 (274)
Q Consensus 134 ~~CG~~g~C~~~--~~~~C~C~~GF~~~ 159 (274)
..|-.|+-|-.. +...|.|++||...
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 457778888642 56789999999764
No 33
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=39.06 E-value=14 Score=30.63 Aligned_cols=87 Identities=23% Similarity=0.486 Sum_probs=36.5
Q ss_pred cCCCCCC----CCCCCCCcccccCC------CCccccCCCceecCCCCcCCCCceeeCC--ccccCCCC-------ceEE
Q 023979 126 PRDLCDT----YALCGAYGICIISD------MPVCQCLKGFKPKSRGYVDWSQGCERDK--SLNYSRQD-------GFIK 186 (274)
Q Consensus 126 p~~~C~~----~~~CG~~g~C~~~~------~~~C~C~~GF~~~~~~~~~~~~GC~r~~--~l~C~~~~-------~f~~ 186 (274)
+.-.|+. .-.||.|+.|.... .-+|.|.+||..... =|++.. ...|.++. ....
T Consensus 38 ~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~-------vCvp~~C~~~~Cg~GKCI~d~~~~~~~ 110 (197)
T PF06247_consen 38 EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG-------VCVPNKCNNKDCGSGKCILDPDNPNNP 110 (197)
T ss_dssp E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS-------SEEEGGGSS---TTEEEEEEEGGGSEE
T ss_pred cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC-------eEchhhcCceecCCCeEEecCCCCCCc
Confidence 4445654 56799999997532 346999999998643 477654 23454210 0010
Q ss_pred Ee--eec-CCCCccceeeccCChHHHHHHHhcCCceEE
Q 023979 187 FT--AMK-LPDATLSWVSKSMNLNECREKCLDNSSCMA 221 (274)
Q Consensus 187 l~--~~~-~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a 221 (274)
.= ++. +|+.... =+..+...|...|.+|=-|..
T Consensus 111 ~CSC~IGkV~~dn~k--Ctk~G~T~C~LKCk~nE~CK~ 146 (197)
T PF06247_consen 111 TCSCNIGKVPDDNKK--CTKTGETKCSLKCKENEECKL 146 (197)
T ss_dssp EEEE-TEEETTTTTE--SEEEE--------TTTEEEEE
T ss_pred eeEeeeceEeccCCc--ccCCCccceeeecCCCcceee
Confidence 00 010 1322111 012245689999988877766
No 34
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=38.93 E-value=19 Score=38.91 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=29.6
Q ss_pred CCCCCCCcccccC-CCCccccCCCceecCCCCcCCCCceeeCC
Q 023979 133 YALCGAYGICIIS-DMPVCQCLKGFKPKSRGYVDWSQGCERDK 174 (274)
Q Consensus 133 ~~~CG~~g~C~~~-~~~~C~C~~GF~~~~~~~~~~~~GC~r~~ 174 (274)
.+.||++|-|... +.-+|.|-|||.-.+-+..-.++-|++..
T Consensus 1244 s~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGv 1286 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGV 1286 (2531)
T ss_pred cCCCCCCCceEEecCceeEEecCCccccceeeecccCccccce
Confidence 6789999999754 46789999999876544223345566543
No 35
>PF07932 DAP_C: D-aminopeptidase, domain C; InterPro: IPR012857 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain C is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain B by a short linker sequence, and interacts extensively with the domain A, the catalytic domain. The gamma loop of domain C forms part of the wall of the catalytic pocket; domain C is in fact thought to confer substrate and inhibitor specificity to the enzyme. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=35.59 E-value=54 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=17.9
Q ss_pred CCceEEEEecCCCCCCCeeEEEEEecC
Q 023979 10 GLDRRITSWKSPDDPSPGNFIWAVERQ 36 (274)
Q Consensus 10 g~~~~L~Sw~s~~dps~G~y~l~~~~~ 36 (274)
+.-|.|..-|+-+-|+||+.+|.++.+
T Consensus 48 ~DVW~L~~~R~mDApaPGdWTlvf~R~ 74 (97)
T PF07932_consen 48 DDVWALACPRGMDAPAPGDWTLVFQRD 74 (97)
T ss_dssp TTEEEEEE---SSSS--EEEEEEEEE-
T ss_pred CcEEEEeccccCCCCCCCceEEEEEec
Confidence 345889999999999999999999754
No 36
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=33.67 E-value=33 Score=34.99 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCcccccC-CCCccccCCCce
Q 023979 128 DLCDTYALCGAYGICIIS-DMPVCQCLKGFK 157 (274)
Q Consensus 128 ~~C~~~~~CG~~g~C~~~-~~~~C~C~~GF~ 157 (274)
|.|. +..|-++..|-+. +.-.|.|.|||.
T Consensus 828 DeC~-psrChp~A~CyntpgsfsC~C~pGy~ 857 (1289)
T KOG1214|consen 828 DECS-PSRCHPAATCYNTPGSFSCRCQPGYY 857 (1289)
T ss_pred cccC-ccccCCCceEecCCCcceeecccCcc
Confidence 6666 7788888888654 355799988885
No 37
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=32.75 E-value=33 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=29.0
Q ss_pred CCCCCCCcccccC-CCCccccCCCceecCCCCcCCCCceeeCCc
Q 023979 133 YALCGAYGICIIS-DMPVCQCLKGFKPKSRGYVDWSQGCERDKS 175 (274)
Q Consensus 133 ~~~CG~~g~C~~~-~~~~C~C~~GF~~~~~~~~~~~~GC~r~~~ 175 (274)
+..||++++|.+. .+..|+|..|++..+.. .-|+..++
T Consensus 741 ~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~-----~tCV~i~~ 779 (1289)
T KOG1214|consen 741 FHRCGPNSVCINLPGSYRCECRSGYEFADDR-----HTCVLITP 779 (1289)
T ss_pred CCCCCCCceeecCCCceeEEEeecceeccCC-----cceEEecC
Confidence 6689999999865 46779999999887643 55766543
No 38
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=31.92 E-value=2.1e+02 Score=21.04 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=22.1
Q ss_pred cEEEEEEeecCCeEEEEEEcCCCCceEEEEeecCCCCCCCCCCCCC
Q 023979 94 AFQRIVMNQTLYLVQRFTWNKATQSWELYSNVPRDLCDTYALCGAY 139 (274)
Q Consensus 94 ~~~rl~L~~dG~l~~~y~w~~~~~~W~~~~~~p~~~C~~~~~CG~~ 139 (274)
.+++++.+.+..- ....|..... -......|..+++|-.+
T Consensus 56 ~l~~~~w~~~~~~-W~~~~~~p~d-----~Cd~y~~CG~~g~C~~~ 95 (110)
T PF00954_consen 56 QLQRYIWNESTQS-WSVFWSAPKD-----QCDVYGFCGPNGICNSN 95 (110)
T ss_pred EEEEEEEecCCCc-EEEEEEeccc-----CCCCccccCCccEeCCC
Confidence 4566666555544 4444443322 13445678888888554
No 39
>PHA02887 EGF-like protein; Provisional
Probab=29.89 E-value=61 Score=24.75 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=24.0
Q ss_pred eecCCCCCC--CCCCCCCcccccC---CCCccccCCCcee
Q 023979 124 NVPRDLCDT--YALCGAYGICIIS---DMPVCQCLKGFKP 158 (274)
Q Consensus 124 ~~p~~~C~~--~~~CG~~g~C~~~---~~~~C~C~~GF~~ 158 (274)
+..-++|.- .++|= +|.|-+- +.|.|.|++||.-
T Consensus 80 ~~hf~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG 118 (126)
T PHA02887 80 SMFFEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTG 118 (126)
T ss_pred ccCccccChHhhCEee-CCEEEccccCCCceeECCCCccc
Confidence 334467754 66786 7899753 4689999999953
No 40
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=25.63 E-value=50 Score=19.20 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=8.9
Q ss_pred CCCCCCcccccCCCCccccCCCc
Q 023979 134 ALCGAYGICIISDMPVCQCLKGF 156 (274)
Q Consensus 134 ~~CG~~g~C~~~~~~~C~C~~GF 156 (274)
+.|-.+.-| ...|+||.|-
T Consensus 12 gscknneqc----qkscscptgc 30 (40)
T PF11403_consen 12 GSCKNNEQC----QKSCSCPTGC 30 (40)
T ss_dssp STTTT-TTS----TTS-SS-TTT
T ss_pred CCccChHHH----hhcCCCCCCC
Confidence 344444444 4569998664
No 41
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=23.59 E-value=1.1e+02 Score=19.35 Aligned_cols=21 Identities=24% Similarity=0.590 Sum_probs=12.3
Q ss_pred CCCCeeEEEEEecCCCcEEEEE
Q 023979 23 DPSPGNFIWAVERQDNPELIMW 44 (274)
Q Consensus 23 dps~G~y~l~~~~~g~~~l~~~ 44 (274)
--++|.|+..+..+... +.||
T Consensus 30 qVasGsfs~a~N~dnG~-vRiW 50 (51)
T PF09081_consen 30 QVASGSFSQAVNEDNGQ-VRIW 50 (51)
T ss_dssp GT-SS--EEEEEETTTT-EEEE
T ss_pred cccccchHhhhhccCCc-EEee
Confidence 34589999999876543 5555
No 42
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=20.04 E-value=1.6e+02 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=23.9
Q ss_pred cCChHHHHHHHhcCCceEEEEecccc-CCCceeEee
Q 023979 203 SMNLNECREKCLDNSSCMAYTNSDIR-GEGSGCAMW 237 (274)
Q Consensus 203 ~~~~~~C~~~Cl~nCsC~a~~~~~~~-~~g~~C~~w 237 (274)
..+.++|..+|=..=.|..+.+.... ++...|++.
T Consensus 37 ~~s~edC~~aCC~~~~CnlAv~e~~~~~~~~~CyLf 72 (93)
T smart00765 37 VNTWEDCVRACCSTPNCNLAVFELRREDAEGNCYLF 72 (93)
T ss_pred cCCHHHHHHHHcCCCCCcEEEEeccCCCCCCceEEE
Confidence 34678999999988888887764211 223359984
Done!