BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023980
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PI3|O Chain O, The Crystal Structure Of Ospa Mutant
Length = 251
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 74 LCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
+ S + S F K NE+GE E+ + A E++G+ + + L+G++ E
Sbjct: 92 VTSKDKSSTFEKFNEKGEVSEKFITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146
>pdb|2I5Z|O Chain O, The Crystal Structure Of Ospa Mutant
Length = 251
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 69 VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
+V + S + S K+NE+GE E+++ A E++G+ + + L+G++ E
Sbjct: 87 LVSKKVTSKDKSSTEEKANEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 1 MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRE 52
M QW+E+ NG D +Y D T P + C TH G + PK+C++
Sbjct: 137 MRTIQWSEIVSNGTD-AYYNYDFTAPERECPKCHESCTH-GCWGEGPKNCQK 186
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRE 52
M QW+E+ NG D Y D T P + C TH G + PK+C++
Sbjct: 137 MRTIQWSEIVSNGTDAYYNY-DFTAPERECPKCHESCTH-GCWGEGPKNCQK 186
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 94 EEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISECLND-----PEMNFSTDELDFSGAS 148
+++ P ++ + E +G +S+ DG D ++ ++ +N P++NF+T + G+S
Sbjct: 38 DDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSS 97
Query: 149 DIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIK 208
+ +I AYD +L+ + N SL+R LA+ + AF
Sbjct: 98 VFETNIRYLGGLLSAYD---LLRGPFSSLATNQTL--VNSLLRQAQTLANGL--KVAFTT 150
Query: 209 PCGV 212
P GV
Sbjct: 151 PSGV 154
>pdb|2OY8|A Chain A, The Crystal Structure Of Ospa Mutant
Length = 320
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 80 PSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
S + K NE+GE E+++ A E++G+ + + L+G++ E
Sbjct: 167 SSTYEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 215
>pdb|2OYB|O Chain O, The Crystal Structure Of Ospa Mutant
Length = 251
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 69 VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
+V + S + S + K NE+GE E+ + A E++G+ + + L+G++ E
Sbjct: 87 LVSKYVTSKDKSSTYEKFNEKGEVSEKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146
>pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
pdb|1FJ1|E Chain E, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|F Chain F, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 257
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 69 VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
+V + S + S K NE+GE E+++ A E++G+ + + L+G++ E
Sbjct: 93 LVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 152
>pdb|2G8C|O Chain O, Atomic-Resolution Crystal Structure Of Borrelia
Burgdorferi Ospa Via Surface Entropy Reduction
Length = 251
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 69 VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
+V + S + S K NE+GE E+++ A E++G+ + + L+G++ E
Sbjct: 87 LVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146
>pdb|2OY7|A Chain A, The Crystal Structure Of Ospa Mutant
Length = 320
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 80 PSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 128
S + K NE+GE E+ + A E++G+ + + L+G++ E
Sbjct: 167 SSTYEKFNEKGEVSEKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,541,854
Number of Sequences: 62578
Number of extensions: 340650
Number of successful extensions: 544
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 20
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)