BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023980
         (274 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
          Length = 300

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/268 (53%), Positives = 186/268 (69%), Gaps = 5/268 (1%)

Query: 8   EVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDT 67
           EV LN ED SYM DDE TPVKAC +L YH T   + +++ +   ET S +KRRRMLQF+ 
Sbjct: 37  EVTLNQEDHSYMFDDENTPVKACSELGYHVT-TEDTNRKMEVHSETRSALKRRRMLQFED 95

Query: 68  QVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GVSASSCDGTDQSLEGWI 126
           Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   SASS +G D   E W 
Sbjct: 96  QP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDASASSFEGLDLYAEEWY 154

Query: 127 SECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGR 186
           ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + Q+  T++  NV+F+GR
Sbjct: 155 ADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV-QRPVTRSSPNVIFKGR 212

Query: 187 KSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSA 246
           KS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +  + + E+P+    SA
Sbjct: 213 KSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAHIEEPAVIQTSA 272

Query: 247 FSGKPVVGKTKIRTEGGKGSITIMRTKG 274
           FSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 273 FSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>sp|Q923B6|STEA4_MOUSE Metalloreductase STEAP4 OS=Mus musculus GN=Steap4 PE=2 SV=1
          Length = 470

 Score = 35.0 bits (79), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 177 TPHNVVFRGRKSLIRTPTKLASSV--AYPFAFIKPCGVHGDITLKDINQR--IHSPASTL 232
           T H +V+ G++ L  +P+ L  S+  AY  A + PC V   + LK I     I    + +
Sbjct: 395 TAHTLVYGGKRFL--SPSILRWSLPSAYILALVIPCAV---LVLKCILIMPCIDKTLTRI 449

Query: 233 RQNTEDPSAYPKSAFSGK 250
           RQ  E  S Y +SA +GK
Sbjct: 450 RQGWERNSKYTQSALNGK 467


>sp|A4STE1|G6PI_AERS4 Glucose-6-phosphate isomerase OS=Aeromonas salmonicida (strain
           A449) GN=pgi PE=3 SV=1
          Length = 549

 Score = 31.6 bits (70), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 6   WNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQF 65
           W E   NG+   Y L  + T +  C  LA   +HN      PK     ++Q         
Sbjct: 377 WGEPGTNGQHAFYQLIHQGTKLIPCDFLAPAISHNPIGDHHPKLLANFFAQ--------- 427

Query: 66  DTQVVDSSLCSDEMPSPFLKSNERGESVEEVLP 98
            T+ +      +++ + FL + +  E VE+++P
Sbjct: 428 -TEALAFGKSKEQVEAEFLAAGKTLEQVEDLVP 459


>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase subunit beta'' OS=Chaetosphaeridium
           globosum GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 30.8 bits (68), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 159 NSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGV--HGDI 216
           N+P  + + N L ++  K  +N V    +  I   TK+ASS  Y    I+ CG+  +G I
Sbjct: 563 NNPNIFSETN-LNKYSLKKFYNFVLEKNQKFISNNTKIASSSIYKH-HIENCGIIKYGSI 620

Query: 217 TLKDINQRIHSPASTLRQ 234
            +K          +T+++
Sbjct: 621 QIKPFPSNFDQDLNTIKE 638


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,527,047
Number of Sequences: 539616
Number of extensions: 4352999
Number of successful extensions: 8564
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8493
Number of HSP's gapped (non-prelim): 80
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)