Query 023980
Match_columns 274
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1psb_C NDR Ser/Thr kinase-like 9.4 1.1E+02 0.0037 18.1 1.0 16 42-62 8-23 (26)
2 4dx8_H KREV interaction trappe 9.2 2E+02 0.0069 25.4 3.0 26 239-264 83-108 (203)
3 1wkj_A Nucleoside diphosphate 7.6 90 0.0031 25.2 0.1 24 203-227 4-27 (137)
4 2hur_A NDK, nucleoside diphosp 7.3 95 0.0033 25.3 0.1 25 203-228 5-29 (142)
5 1nhk_R Nucleoside diphosphate 7.0 1E+02 0.0034 25.3 0.1 25 203-228 5-29 (144)
6 3zwl_E Eukaryotic translation 7.0 86 0.003 22.0 -0.3 9 56-64 14-22 (50)
7 4hr2_A Nucleoside diphosphate 6.8 1.1E+02 0.0036 25.3 0.1 25 202-227 9-33 (145)
8 3llb_A Uncharacterized protein 6.7 1.6E+02 0.0056 21.1 1.1 17 212-228 13-29 (83)
9 2r2z_A Hemolysin; APC85144, en 6.7 1.6E+02 0.0056 21.3 1.1 17 212-228 20-36 (93)
10 2dxe_A Nucleoside diphosphate 6.5 1.1E+02 0.0038 25.5 0.1 25 202-227 9-33 (160)
No 1
>1psb_C NDR Ser/Thr kinase-like protein; helix-loop-helix, protein-peptide complex, metal binding protein; NMR {Bos taurus}
Probab=9.37 E-value=1.1e+02 Score=18.08 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.0
Q ss_pred CCCCCchhHHHHhHHhhhhhc
Q 023980 42 NMSKEPKDCRETYSQIKRRRM 62 (274)
Q Consensus 42 ~~~ke~d~~~E~s~~sKRRRm 62 (274)
...||++.+ +.||.+|
T Consensus 8 ~~~kEte~l-----Rl~R~Kl 23 (26)
T 1psb_C 8 HARKETEFL-----RLKRTRL 23 (26)
T ss_dssp SCCTTHHHH-----HHHHHHH
T ss_pred HHHHHHHHH-----HHhhccc
Confidence 357888866 8888876
No 2
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=9.20 E-value=2e+02 Score=25.42 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCcceeeeeeeeCCCc
Q 023980 239 PSAYPKSAFSGKPVVGKTKIRTEGGK 264 (274)
Q Consensus 239 p~~~~~~g~SGK~Vv~~tri~T~gg~ 264 (274)
|.++..-|+.||.||...++.-+|++
T Consensus 83 piSp~nqG~~gKRVV~mKkf~ldg~~ 108 (203)
T 4dx8_H 83 PISPANQGIRGKRVVLMKKFPLDGEK 108 (203)
T ss_dssp CC---CCCCCCSCCEEEEEEECCSSC
T ss_pred cCCCCCccccceeEEEeeecccccCC
Confidence 44556679999999999999998643
No 3
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=7.64 E-value=90 Score=25.23 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=16.9
Q ss_pred eceeeccCCccCCcchHhHHhhhcC
Q 023980 203 PFAFIKPCGVHGDITLKDINQRIHS 227 (274)
Q Consensus 203 PF~~vKP~g~~gd~TL~DIN~ri~~ 227 (274)
=|.+|||.++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 37899999986543 4667666653
No 4
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=7.29 E-value=95 Score=25.27 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.0
Q ss_pred eceeeccCCccCCcchHhHHhhhcCC
Q 023980 203 PFAFIKPCGVHGDITLKDINQRIHSP 228 (274)
Q Consensus 203 PF~~vKP~g~~gd~TL~DIN~ri~~~ 228 (274)
=|.+|||.++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 5 TFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48899999986543 45777777544
No 5
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=7.03 E-value=1e+02 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.0
Q ss_pred eceeeccCCccCCcchHhHHhhhcCC
Q 023980 203 PFAFIKPCGVHGDITLKDINQRIHSP 228 (274)
Q Consensus 203 PF~~vKP~g~~gd~TL~DIN~ri~~~ 228 (274)
=|.+|||.++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 5 TLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48899999986554 45777777544
No 6
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=7.01 E-value=86 Score=22.02 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=6.8
Q ss_pred Hhhhhhccc
Q 023980 56 QIKRRRMLQ 64 (274)
Q Consensus 56 ~sKRRRmLq 64 (274)
..+|||||+
T Consensus 14 Ie~RRrlLe 22 (50)
T 3zwl_E 14 ILHQRELLK 22 (50)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358899885
No 7
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=6.75 E-value=1.1e+02 Score=25.33 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.3
Q ss_pred eeceeeccCCccCCcchHhHHhhhcC
Q 023980 202 YPFAFIKPCGVHGDITLKDINQRIHS 227 (274)
Q Consensus 202 yPF~~vKP~g~~gd~TL~DIN~ri~~ 227 (274)
.=|++|||.++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 9 RTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 458999999876542 4567777643
No 8
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.68 E-value=1.6e+02 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
+.|.+.|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (83)
T 3llb_A 13 VKALTPVDAFNDFFGSE 29 (83)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 67999999999998764
No 9
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=6.67 E-value=1.6e+02 Score=21.34 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.1
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
+.|.++|.|+|+.+-..
T Consensus 20 v~G~~~l~dl~~~l~~~ 36 (93)
T 2r2z_A 20 VQGRMLIDEFNEVFETD 36 (93)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHhCCC
Confidence 68999999999998765
No 10
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=6.51 E-value=1.1e+02 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=17.7
Q ss_pred eeceeeccCCccCCcchHhHHhhhcC
Q 023980 202 YPFAFIKPCGVHGDITLKDINQRIHS 227 (274)
Q Consensus 202 yPF~~vKP~g~~gd~TL~DIN~ri~~ 227 (274)
.=|.+|||.++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~G~Ii~rie~ 33 (160)
T 2dxe_A 9 RTLVIIKPDAVVRGL-IGEIISRFEK 33 (160)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEEChHHhhccc-HHHHHHHHHH
Confidence 458999999986543 4667666653
Done!