Query 023980
Match_columns 274
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 16:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5va_ a.4.5.14 (A:) Adipocyt 20.2 23 0.0017 25.6 2.0 18 211-228 20-37 (94)
2 d2cyua1 a.9.1.1 (A:2-40) E3-bi 12.2 42 0.0031 20.7 1.4 23 203-225 15-37 (39)
3 d2nqwa1 d.145.1.4 (A:4-90) Hyp 11.1 45 0.0033 22.7 1.4 26 203-228 2-29 (87)
4 d1w85i_ a.9.1.1 (I:) E3/E1 bin 10.3 57 0.0041 20.4 1.6 21 205-225 20-40 (42)
5 d2o3ga1 d.145.1.4 (A:180-255) 8.9 43 0.0032 22.4 0.6 17 212-228 5-21 (76)
6 d2rk5a1 d.145.1.4 (A:5-88) Put 8.7 55 0.004 21.9 1.1 17 212-228 10-26 (84)
7 d2p13a1 d.145.1.4 (A:431-515) 8.5 57 0.0041 22.1 1.1 17 212-228 15-31 (85)
8 d1uqra_ c.23.13.1 (A:) Type II 7.6 67 0.0049 24.7 1.3 17 212-228 22-38 (146)
9 d2c6ya1 a.4.5.14 (A:1-98) Inte 7.6 76 0.0055 22.8 1.5 19 210-228 18-36 (98)
10 d1gqoa_ c.23.13.1 (A:) Type II 7.5 70 0.0051 24.4 1.3 16 213-228 22-37 (141)
No 1
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.23 E-value=23 Score=25.62 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=14.9
Q ss_pred CccCCcchHhHHhhhcCC
Q 023980 211 GVHGDITLKDINQRIHSP 228 (274)
Q Consensus 211 g~~gd~TL~DIN~ri~~~ 228 (274)
.-+|.+||+||.+.|...
T Consensus 20 sp~~~ltL~eIY~~i~~~ 37 (94)
T d1d5va_ 20 APEKKITLNGIYQFIMDR 37 (94)
T ss_dssp CSSSSBCHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHH
Confidence 457889999999999754
No 2
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=12.25 E-value=42 Score=20.66 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.5
Q ss_pred eceeeccCCccCCcchHhHHhhh
Q 023980 203 PFAFIKPCGVHGDITLKDINQRI 225 (274)
Q Consensus 203 PF~~vKP~g~~gd~TL~DIN~ri 225 (274)
-.+.|++.|.+|-||-.||=+-|
T Consensus 15 dl~~i~GtG~~GRI~k~Dv~~~i 37 (39)
T d2cyua1 15 DASAIKGTGVGGRLTREDVEKHL 37 (39)
T ss_dssp CGGGSCCCSSSSCCCHHHHHHHS
T ss_pred CHHHCcCCCCCCcEeHHHHHHHH
Confidence 34678999999999999995443
No 3
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.05 E-value=45 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred eceeeccC--CccCCcchHhHHhhhcCC
Q 023980 203 PFAFIKPC--GVHGDITLKDINQRIHSP 228 (274)
Q Consensus 203 PF~~vKP~--g~~gd~TL~DIN~ri~~~ 228 (274)
||..+-.+ -++|.++|.|+|+.+-..
T Consensus 2 p~~ki~d~~~~v~G~~~l~dl~~~l~~~ 29 (87)
T d2nqwa1 2 PFKVLGDGSYLFEGKTSLSDVRHYLDLP 29 (87)
T ss_dssp CEEECTTSCEEEETTCBHHHHHHHHTCC
T ss_pred CeEEECCCEEEEEEeCCHHHHHHHhCCC
Confidence 55555555 368999999999998654
No 4
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.30 E-value=57 Score=20.42 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=17.7
Q ss_pred eeeccCCccCCcchHhHHhhh
Q 023980 205 AFIKPCGVHGDITLKDINQRI 225 (274)
Q Consensus 205 ~~vKP~g~~gd~TL~DIN~ri 225 (274)
+.|++.|.+|-||-.||-+-|
T Consensus 20 ~~i~GTG~~GRItk~DV~~~i 40 (42)
T d1w85i_ 20 RLVQGTGKNGRVLKEDIDAFL 40 (42)
T ss_dssp TTSCCCSGGGCCCHHHHHHHH
T ss_pred HHCccCCCCCcEeHHHHHHHh
Confidence 468999999999999996544
No 5
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=8.89 E-value=43 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=15.0
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
++|.++|.|+|+.+-.+
T Consensus 5 vdG~~~i~dl~~~l~~~ 21 (76)
T d2o3ga1 5 VEGALEYVELAPQLNLP 21 (76)
T ss_dssp EETTCBHHHHTTTTTCC
T ss_pred EEcCCCHHHHHHHHCcC
Confidence 68999999999998765
No 6
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=8.68 E-value=55 Score=21.93 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.0
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
++|.++|.|+|+.+-..
T Consensus 10 v~G~~~l~dl~~~l~~~ 26 (84)
T d2rk5a1 10 VLGTMTLNDFNEYFETD 26 (84)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EEeeeEHHHHHHHhCCC
Confidence 67999999999999765
No 7
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=8.46 E-value=57 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
++|.++|.|+|+.+-..
T Consensus 15 v~G~~~l~dl~~~l~~~ 31 (85)
T d2p13a1 15 MDGWISIRKASNLLEHD 31 (85)
T ss_dssp EETTSBHHHHHHHHTSC
T ss_pred EEecCCHHHHHHHHCCC
Confidence 68999999999998654
No 8
>d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=7.63 E-value=67 Score=24.75 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.0
Q ss_pred ccCCcchHhHHhhhcCC
Q 023980 212 VHGDITLKDINQRIHSP 228 (274)
Q Consensus 212 ~~gd~TL~DIN~ri~~~ 228 (274)
.-|.+||.|||+++..-
T Consensus 22 iYG~~TL~~i~~~~~~~ 38 (146)
T d1uqra_ 22 IYGSQTLSDIEQHLQQS 38 (146)
T ss_dssp GTTCCCHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHH
Confidence 56889999999998643
No 9
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.63 E-value=76 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.4
Q ss_pred CCccCCcchHhHHhhhcCC
Q 023980 210 CGVHGDITLKDINQRIHSP 228 (274)
Q Consensus 210 ~g~~gd~TL~DIN~ri~~~ 228 (274)
...+|.+||+||.+.|...
T Consensus 18 ~sp~~~ltL~eIy~~i~~~ 36 (98)
T d2c6ya1 18 MAPDKQLTLNGIYTHITKN 36 (98)
T ss_dssp TSTTSCEEHHHHHHHHHHH
T ss_pred hCCCCCccHHHHHHHHHHh
Confidence 3467889999999999654
No 10
>d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Bacillus subtilis [TaxId: 1423]}
Probab=7.49 E-value=70 Score=24.44 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.1
Q ss_pred cCCcchHhHHhhhcCC
Q 023980 213 HGDITLKDINQRIHSP 228 (274)
Q Consensus 213 ~gd~TL~DIN~ri~~~ 228 (274)
-|.+||.|||+++..-
T Consensus 22 YG~~TL~~i~~~~~~~ 37 (141)
T d1gqoa_ 22 FGRQTLTDIETDLFQF 37 (141)
T ss_dssp HCSCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 4789999999988654
Done!