BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023981
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 16/282 (5%)
Query: 5 PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
P Y D+GK ARD+ K Y K + T S G+ TSSG+ E VN L+ K
Sbjct: 16 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVNGSLETK 73
Query: 64 NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
T+ K +T + L T ITV D+ A GLK T S P+ +++ K++ Y +
Sbjct: 74 YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 133
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
+ + V A P + + V+G G ++F++ T+ N + + +
Sbjct: 134 HINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLH 193
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
N+N+ G S Y VN + + ++ + ++ +DP A+VNN+
Sbjct: 194 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 252
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
+ +P T+S +D K + K GL L +
Sbjct: 253 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 16/282 (5%)
Query: 5 PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
P Y D+GK ARD+ K Y K + T S G+ TSSG+ E V L+ K
Sbjct: 7 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVTGSLETK 64
Query: 64 NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
T+ K +T + L T ITV D+ A GLK T S P+ +++ K++ Y +
Sbjct: 65 YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 124
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
+ + + A P + + V+G G ++F++ T+ N + + +
Sbjct: 125 HINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLH 184
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
N+N+ G S Y VN + + ++ + ++ +DP A+VNN+
Sbjct: 185 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 243
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
+ +P T+S +D K + K GL L +
Sbjct: 244 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 16/282 (5%)
Query: 5 PGLYTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLKNK 63
P Y D+GK ARD+ K Y K + T S G+ TSSG+ E V L+ K
Sbjct: 4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET--TKVTGSLETK 61
Query: 64 NITTDL------KVDTASNLFTTITV-DEPAPGLK-TILSFKVPD--QRSGKVELQYLHD 113
T+ K +T + L T ITV D+ A GLK T S P+ +++ K++ Y +
Sbjct: 62 YRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKRE 121
Query: 114 YAGISTSVGL-TANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIAS 172
+ + + A P + + V+G G ++F++ T+ N + + +
Sbjct: 122 HINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLH 181
Query: 173 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232
N+N+ G S Y VN + + ++ + ++ +DP A+VNN+
Sbjct: 182 TNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 273
+ +P T+S +D K + K GL L +
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 201 IHSFSTTDNTITVGTQHILDPLTTLKARVNNAGI---ASALIQHEWRPKSLFTISGE 254
H F+ ++ G + +L L LK V +A + S+++ ++W+P +FT+ GE
Sbjct: 95 FHYFTLGNHEFDAGNEGLLKLLEPLKIPVLSANVIPDKSSILYNKWKPYDIFTVDGE 151
>pdb|1A6C|A Chain A, Structure Of Tobacco Ringspot Virus
Length = 513
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 52 FLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKT-ILSFKVPDQRSGKVELQY 110
F+ +NT + + + ++S L+ T+ P T +++F +P Y
Sbjct: 331 FIVHINTWRPDSQVHPPMF--SSSELYNWFTLTNLKPDANTGVVNFDIPG---------Y 379
Query: 111 LHDYAGISTSVGLTANPIVNFSAVIGTN 138
+HD+A +V L +NP+ A G +
Sbjct: 380 IHDFASKDATVTLASNPLSWLVAATGWH 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,864,317
Number of Sequences: 62578
Number of extensions: 319216
Number of successful extensions: 554
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 15
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)