Query 023981
Match_columns 274
No_of_seqs 134 out of 632
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07306 Porin3_VDAC Voltage-de 100.0 8.1E-59 1.8E-63 409.4 40.2 268 5-273 1-276 (276)
2 KOG3126 Porin/voltage-dependen 100.0 2.6E-57 5.6E-62 390.5 30.6 272 2-274 1-281 (281)
3 cd07303 Porin3 Eukaryotic pori 100.0 3.6E-51 7.7E-56 359.6 35.0 258 7-272 1-273 (274)
4 cd07305 Porin3_Tom40 Transloca 100.0 4.3E-48 9.4E-53 341.5 32.2 264 3-273 2-279 (279)
5 PF01459 Porin_3: Eukaryotic p 100.0 4.1E-47 8.9E-52 334.3 38.1 260 4-267 1-273 (273)
6 KOG3296 Translocase of outer m 100.0 2.6E-36 5.7E-41 261.8 8.6 255 3-273 28-308 (308)
7 TIGR00989 3a0801s07tom40 mitoc 99.8 2.9E-20 6.3E-25 147.6 13.6 144 3-149 2-161 (161)
8 cd07305 Porin3_Tom40 Transloca 99.5 9.5E-11 2.1E-15 103.7 26.5 184 80-270 27-224 (279)
9 PF01459 Porin_3: Eukaryotic p 99.1 4.8E-07 1E-11 79.4 27.4 132 137-272 87-225 (273)
10 cd07306 Porin3_VDAC Voltage-de 98.9 2.2E-06 4.8E-11 75.7 25.2 172 37-214 88-272 (276)
11 cd07303 Porin3 Eukaryotic pori 98.7 1.9E-05 4.1E-10 69.7 24.8 132 137-273 88-221 (274)
12 TIGR00989 3a0801s07tom40 mitoc 98.0 0.00083 1.8E-08 53.9 15.6 64 137-203 90-161 (161)
13 KOG3126 Porin/voltage-dependen 97.4 0.035 7.7E-07 48.8 18.4 110 106-219 168-279 (281)
14 KOG3296 Translocase of outer m 97.3 0.00018 3.8E-09 63.6 2.9 133 137-272 104-255 (308)
15 PF10082 DUF2320: Uncharacteri 92.5 8.4 0.00018 35.3 21.4 46 228-273 329-380 (381)
16 PF12519 DUF3722: Protein of u 90.9 3.8 8.2E-05 35.8 10.6 65 137-202 189-259 (260)
17 COG2067 FadL Long-chain fatty 90.2 7.4 0.00016 36.8 12.8 76 179-257 285-363 (440)
18 PRK10716 long-chain fatty acid 90.1 7.3 0.00016 36.8 12.9 76 178-256 285-362 (435)
19 COG2067 FadL Long-chain fatty 88.4 14 0.00031 34.9 13.2 94 130-227 289-399 (440)
20 PF10082 DUF2320: Uncharacteri 84.5 32 0.0007 31.4 17.2 79 194-273 259-343 (381)
21 PF11383 DUF3187: Protein of u 84.4 31 0.00067 31.2 14.3 66 207-272 236-315 (319)
22 PF03349 Toluene_X: Outer memb 83.9 36 0.00078 31.5 19.2 80 179-258 269-352 (427)
23 PRK10993 outer membrane protea 81.2 41 0.00089 30.3 13.4 180 67-257 63-272 (314)
24 PRK03761 LPS assembly outer me 79.2 61 0.0013 33.1 14.2 99 136-245 611-732 (778)
25 PF03349 Toluene_X: Outer memb 78.4 56 0.0012 30.2 15.4 30 226-255 263-292 (427)
26 cd00342 gram_neg_porins Porins 78.4 47 0.001 29.3 18.7 72 156-227 201-291 (329)
27 PF04357 DUF490: Family of unk 77.0 23 0.00049 32.3 9.7 61 181-242 315-378 (379)
28 PF13557 Phenol_MetA_deg: Puta 76.0 47 0.001 28.0 13.8 37 234-272 210-246 (248)
29 PF04338 DUF481: Protein of un 73.4 36 0.00079 27.9 9.3 24 181-204 130-153 (210)
30 PF13609 Porin_4: Gram-negativ 72.1 66 0.0014 28.0 13.8 46 207-253 248-303 (311)
31 PF05275 CopB: Copper resistan 71.9 46 0.00099 28.2 9.4 76 181-257 56-140 (210)
32 cd00342 gram_neg_porins Porins 71.7 71 0.0015 28.1 16.6 101 156-257 162-297 (329)
33 PRK15318 intimin-like protein 67.9 80 0.0017 31.6 11.2 38 137-174 167-205 (730)
34 PF12519 DUF3722: Protein of u 65.7 94 0.002 27.2 12.7 62 193-256 191-258 (260)
35 PF14052 Caps_assemb_Wzi: Caps 64.5 61 0.0013 30.5 9.7 42 232-273 399-442 (443)
36 TIGR03014 EpsL exopolysacchari 64.4 1.2E+02 0.0026 28.0 11.8 25 235-259 255-279 (381)
37 PF11924 DUF3442: Protein of u 64.1 1E+02 0.0022 27.2 11.1 134 137-273 105-248 (280)
38 PF11383 DUF3187: Protein of u 63.5 1.2E+02 0.0025 27.5 16.3 97 137-233 170-300 (319)
39 PF06178 KdgM: Oligogalacturon 63.3 34 0.00074 29.1 7.1 77 178-254 60-156 (218)
40 PRK10716 long-chain fatty acid 61.5 1.5E+02 0.0032 28.0 18.0 17 136-152 161-177 (435)
41 PF01278 Omptin: Omptin family 61.5 1.2E+02 0.0026 27.1 20.0 185 67-257 39-251 (294)
42 PF07642 DUF1597: Outer membra 60.3 1.1E+02 0.0024 27.5 10.4 79 137-229 219-312 (344)
43 PRK04423 organic solvent toler 56.2 2.4E+02 0.0053 28.9 16.3 83 136-218 627-720 (798)
44 PRK14574 hmsH outer membrane p 53.1 2.8E+02 0.006 28.7 13.2 100 158-257 593-718 (822)
45 PRK10049 pgaA outer membrane p 52.5 2.2E+02 0.0049 28.9 12.0 103 156-258 534-662 (765)
46 PF04575 DUF560: Protein of un 51.9 1.6E+02 0.0035 25.6 15.7 80 181-260 119-220 (285)
47 PF13557 Phenol_MetA_deg: Puta 51.1 1.5E+02 0.0032 24.9 11.4 48 183-230 168-230 (248)
48 PF05420 BCSC_C: Cellulose syn 50.9 46 0.001 30.4 6.1 41 181-221 299-341 (342)
49 TIGR03519 Bac_Flav_fam_1 Bacte 50.5 1.8E+02 0.0039 25.7 13.9 62 193-271 226-291 (292)
50 PF03895 YadA_anchor: YadA-lik 48.5 89 0.0019 21.6 7.4 36 193-230 26-61 (78)
51 PF03895 YadA_anchor: YadA-lik 47.8 92 0.002 21.6 8.4 39 180-219 40-78 (78)
52 PF13505 OMP_b-brl: Outer memb 46.5 1.3E+02 0.0028 22.9 13.8 23 233-255 131-153 (176)
53 PRK12580 outer membrane protea 45.2 2.3E+02 0.005 25.5 13.0 179 67-257 63-269 (312)
54 TIGR03014 EpsL exopolysacchari 43.3 2.7E+02 0.0059 25.7 16.7 77 180-258 267-359 (381)
55 PRK10177 putative invasin; Pro 43.0 2.4E+02 0.0051 26.9 9.5 37 136-172 168-205 (465)
56 PF11854 DUF3374: Protein of u 42.5 3.6E+02 0.0079 26.9 15.4 68 137-209 484-553 (637)
57 TIGR03509 OMP_MtrB_PioB decahe 40.2 3.9E+02 0.0085 26.7 13.8 90 182-273 538-648 (649)
58 PF06178 KdgM: Oligogalacturon 39.6 2.4E+02 0.0051 24.0 9.4 18 185-202 28-45 (218)
59 PRK09980 ompL outer membrane p 35.9 2.3E+02 0.005 24.3 7.8 51 178-228 70-123 (230)
60 PF11924 DUF3442: Protein of u 35.9 1E+02 0.0022 27.2 5.9 38 233-272 95-133 (280)
61 PF13609 Porin_4: Gram-negativ 33.8 3.1E+02 0.0067 23.6 18.1 13 137-149 152-164 (311)
62 TIGR01414 autotrans_barl outer 27.5 4.9E+02 0.011 24.0 11.8 65 193-257 334-411 (429)
63 PF09381 Porin_OmpG: Outer mem 26.3 2.4E+02 0.0051 24.9 6.2 65 208-272 224-299 (301)
64 PF03687 UPF0164: Uncharacteri 25.6 4.4E+02 0.0095 23.9 7.9 10 137-146 158-167 (331)
65 PRK12580 outer membrane protea 24.1 2.9E+02 0.0062 24.9 6.5 74 181-257 133-207 (312)
66 PRK10993 outer membrane protea 24.1 5.4E+02 0.012 23.3 14.1 74 181-256 133-209 (314)
67 PF04575 DUF560: Protein of un 23.2 4.9E+02 0.011 22.5 10.3 20 226-245 229-248 (285)
68 COG4206 BtuB Outer membrane co 21.6 3.5E+02 0.0076 26.5 6.9 43 181-232 540-582 (608)
69 PF03687 UPF0164: Uncharacteri 21.4 6.2E+02 0.013 23.0 8.1 65 201-273 260-324 (331)
70 COG2829 PldA Outer membrane ph 21.0 3.9E+02 0.0085 23.8 6.6 42 231-274 267-315 (317)
No 1
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=8.1e-59 Score=409.38 Aligned_cols=268 Identities=41% Similarity=0.606 Sum_probs=255.6
Q ss_pred CCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeecCeEEEEEEcCCCceEEEE
Q 023981 5 PGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNKNITTDLKVDTASNLFTTI 81 (274)
Q Consensus 5 P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~g~l~~~~ 81 (274)
||+|.||+|.|||||++||+|+ |+|+|++++++|++|++++.... +++.|.+|++|+.++++++++|+++|++.+++
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v 80 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI 80 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence 8999999999999999999975 99999999999999999998766 69999999999999999999999999999999
Q ss_pred EEcc-CCCCcEEEEEEEcc---CCCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCCCccce
Q 023981 82 TVDE-PAPGLKTILSFKVP---DQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTK 157 (274)
Q Consensus 82 ~~~~-~~~glk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~~~~~~ 157 (274)
++++ +.||+|+.+.+.+| +.++++++++|+|+++++++.+++...|.++.++++++++|++|+|+.||...+.+++
T Consensus 81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~ 160 (276)
T cd07306 81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK 160 (276)
T ss_pred EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence 9999 77999999999975 3678999999999999999999998789999999999999999999999999888999
Q ss_pred eeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEE
Q 023981 158 CNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASA 237 (274)
Q Consensus 158 ~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~ 237 (274)
|+++++|+.+||++++++.+ ++.+.+|||||+++++++|+|+.|++..+++++++|+||.+++++++|||||++|.+++
T Consensus 161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~ 239 (276)
T cd07306 161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL 239 (276)
T ss_pred EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEE
Confidence 99999999999999999986 78999999999999999999999999889999999999999888999999999999999
Q ss_pred EEEEeecCCeEEEEEEEEeccccc-CCceeEEEEEEc
Q 023981 238 LIQHEWRPKSLFTISGEVDTKAIE-KSAKFGLALALK 273 (274)
Q Consensus 238 ~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~ 273 (274)
+|+++|+|++++++|+++|++++. +.||||++|+|+
T Consensus 240 ~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~ 276 (276)
T cd07306 240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276 (276)
T ss_pred EEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence 999999999999999999999885 799999999986
No 2
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-57 Score=390.52 Aligned_cols=272 Identities=39% Similarity=0.540 Sum_probs=256.5
Q ss_pred CCCCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeec--CeEEEEEEcCCCc
Q 023981 2 GKGPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNK--NITTDLKVDTASN 76 (274)
Q Consensus 2 ~~~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~--~~~~~~~~d~~g~ 76 (274)
+|.||+|.||+|.|||||++||+|+ +++++++++.+|++|++++.... .++.|.+|++|+++ +++++++|+++++
T Consensus 1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~ 80 (281)
T KOG3126|consen 1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT 80 (281)
T ss_pred CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence 4899999999999999999999998 89999999988999999998654 49999999999988 8999999999999
Q ss_pred eEEEEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCC
Q 023981 77 LFTTITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKS 152 (274)
Q Consensus 77 l~~~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~ 152 (274)
|.++|.+++ +.||||+.+.+.+|+ .+++|++++|.|+++++.+...+.++|.+.+++|++.++|++|+|+.||.+.
T Consensus 81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~ 160 (281)
T KOG3126|consen 81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS 160 (281)
T ss_pred cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence 999999987 999999999999866 7899999999999999988643457999999999999999999999999999
Q ss_pred CccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCC
Q 023981 153 GNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232 (274)
Q Consensus 153 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~ 232 (274)
+.+++|+++++|..+|+++++.++ ++..+.+|+|||+++.++++++++|.....++.++||.||.+|+.++|||||+++
T Consensus 161 ~~~t~~n~~lgy~~~d~~l~~~~n-n~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~ 239 (281)
T KOG3126|consen 161 GKLTKYNAALGYTTEDFTLHLNLN-NGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNA 239 (281)
T ss_pred CcEeeEEEEEEeecCCcEEEEEec-ccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCC
Confidence 999999999999999999999997 5779999999999999999999999998889999999999999999999999999
Q ss_pred ceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEcC
Q 023981 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 274 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~~ 274 (274)
|+++++|||+|+|++.+++|+++|.+++...||||++|+|+|
T Consensus 240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~ 281 (281)
T KOG3126|consen 240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP 281 (281)
T ss_pred ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence 999999999999999999999999999954599999999998
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=3.6e-51 Score=359.64 Aligned_cols=258 Identities=25% Similarity=0.379 Sum_probs=225.4
Q ss_pred cccccccccccccccCCCCcceEEEEEeCCCCcEEEEEEEec------CceeeEEEEEEEee--cCeEEEEEEcCCCceE
Q 023981 7 LYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKK------GELFLADVNTQLKN--KNITTDLKVDTASNLF 78 (274)
Q Consensus 7 ~f~dl~K~akDll~~~y~~~~~l~~~~~~~~g~~~~~~~~~~------~~~~~g~~~~~~~~--~~~~~~~~~d~~g~l~ 78 (274)
+|+||+|+|||||++||++++|++|++..++ +|++++... ...+.+.++.+|.+ .++++..+|++++++.
T Consensus 1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~ 78 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG 78 (274)
T ss_pred ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence 5999999999999999999999999998876 688877643 34777888888754 3789999999999999
Q ss_pred EEEEEcc-CCCCcEEEEEEEccCCCCceEEEEEeeccee----eeEEEeCCCCCeEEEEEEEecCccEEeEEEEEECCCC
Q 023981 79 TTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAG----ISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSG 153 (274)
Q Consensus 79 ~~~~~~~-~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~~p~~~~s~v~~~~~~~lG~e~~~~~~~~ 153 (274)
+++++.+ |.||+|+++++++++ ..++.++||+++|.+ .+..++. .+|.+..+++.++++|++|+|+.||+++
T Consensus 79 ~~~~~~~~~~~glk~~~~~~~~~-~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~- 155 (274)
T cd07303 79 LEITVEDQLSRGLKSTFDSSFSP-NTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS- 155 (274)
T ss_pred EEEEEecccCCCeEEEEEEEECC-CCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-
Confidence 9999988 899999999999742 134455555555544 4434332 5798888999999999999999999987
Q ss_pred ccceeeeEEeEEc--CCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcC
Q 023981 154 NFTKCNAGLSFNN--ADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNN 231 (274)
Q Consensus 154 ~~~~~~~~~~y~~--~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds 231 (274)
..++++++++|.. +||++++++.+ ++.+.+|||||+++++++|+|++|+.+++++.++||+||.+|+++++|||||+
T Consensus 156 ~~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids 234 (274)
T cd07303 156 RVTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNN 234 (274)
T ss_pred cccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECC
Confidence 4689999999998 89999999975 78999999999999999999999998889999999999999888999999999
Q ss_pred CceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 232 AGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 232 ~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
+|.|+++||++|+|+++|++|+++|++ +++||||+||+|
T Consensus 235 ~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~ 273 (274)
T cd07303 235 SSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF 273 (274)
T ss_pred CceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence 999999999999999999999999996 789999999987
No 4
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=4.3e-48 Score=341.51 Aligned_cols=264 Identities=19% Similarity=0.275 Sum_probs=233.7
Q ss_pred CCCCcccccccccccccccCCCCcceEEEEEeCCCCcEEEEEEEec-Cc-eeeEEEEEEEeecC--eEEEEEEcCCCceE
Q 023981 3 KGPGLYTDIGKKARDLLYKDYQSDHKFTITTYSPTGVAITSSGTKK-GE-LFLADVNTQLKNKN--ITTDLKVDTASNLF 78 (274)
Q Consensus 3 ~~P~~f~dl~K~akDll~~~y~~~~~l~~~~~~~~g~~~~~~~~~~-~~-~~~g~~~~~~~~~~--~~~~~~~d~~g~l~ 78 (274)
+|||+||||+|+||||++.+|..|.|++++....+.+.++.+.... .. ...+.+.+.|..++ +++.+++|++|+++
T Consensus 2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~l~ 81 (279)
T cd07305 2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGNLN 81 (279)
T ss_pred cCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCcee
Confidence 6999999999999999999998889999998766666666666532 22 55678888999888 99999999999999
Q ss_pred EEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCe-EEEEEEEe-------cCccEEeEEEEEE
Q 023981 79 TTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPI-VNFSAVIG-------TNVLSLGTDLSFD 149 (274)
Q Consensus 79 ~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~-~~~s~v~~-------~~~~~lG~e~~~~ 149 (274)
++++++ |.+++++++.+++++. .+...|+.+||.+.++++.++ .+|+ ++.+++++ +|+|++|+|+.|+
T Consensus 82 ~~~~~~-~~~~~~~k~~~~~~~~--~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~ 158 (279)
T cd07305 82 ARIIHQ-LGDRLRSKLQAQLQDS--KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQ 158 (279)
T ss_pred EEEEec-cCcceEEEEEEEecCC--CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEE
Confidence 999999 9999999999998763 446777777777777777776 5774 35666665 9999999999999
Q ss_pred C-CCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEE
Q 023981 150 S-KSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKAR 228 (274)
Q Consensus 150 ~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~k 228 (274)
+ +.++++.++++++|+.+||+++++++++ +.+.+|||||+++++++|+|++|+...+++.+++|+||.+ +++++||+
T Consensus 159 ~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~-~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~-~~~~~k~~ 236 (279)
T cd07305 159 RVPGNGISVLSYAARYTAGNWIASGQLGAQ-GGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF-RQSRFRGS 236 (279)
T ss_pred EcCCCCceeEEEEEEEccCCEEEEEEEcCC-CeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc-CCCEEEEE
Confidence 6 5677999999999999999999999864 5999999999999999999999999999999999999999 59999999
Q ss_pred EcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 229 VNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 229 vds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
||++|.|+++||++|+|++++++|+++|++ ++++|||+||+|+
T Consensus 237 ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~ 279 (279)
T cd07305 237 IDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG 279 (279)
T ss_pred EcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence 999999999999999999999999999996 7899999999985
No 5
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=4.1e-47 Score=334.30 Aligned_cols=260 Identities=35% Similarity=0.469 Sum_probs=226.4
Q ss_pred CCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEec--Cc-eeeEEEEEEEeecCeEEEEEEcCCCceEE
Q 023981 4 GPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKK--GE-LFLADVNTQLKNKNITTDLKVDTASNLFT 79 (274)
Q Consensus 4 ~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~d~~g~l~~ 79 (274)
|||.|+||+|+|||||+++|+|+ ++|+|+++++.+..|+.++... .. .+.+.++++|. +..+...|+.++...+
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~ 78 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL 78 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence 79999999999999999999997 9999999988999999999754 44 79999999998 5666677777777777
Q ss_pred EEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecceeeeEEEeCCCCCeEEEEEEEe-cCccEEeEEEEEECCCCc
Q 023981 80 TITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIG-TNVLSLGTDLSFDSKSGN 154 (274)
Q Consensus 80 ~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~~-~~~~~lG~e~~~~~~~~~ 154 (274)
++.+.+ +.+++++++.+++++ .+..+++++|+++.+++.++++...+|.+.++.+.. +|+|++|+|+.|+...+.
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~ 158 (273)
T PF01459_consen 79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK 158 (273)
T ss_dssp EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence 777776 999999999999644 267889999999999999999875578889999985 669999999999999988
Q ss_pred cceeeeEEeEEcC----CeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEc
Q 023981 155 FTKCNAGLSFNNA----DLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVN 230 (274)
Q Consensus 155 ~~~~~~~~~y~~~----~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvd 230 (274)
+.+|+++++|..+ +|++++++.++...+.+|||||+++++++|+|++|++..+++.++||++|.+++.+++|+|||
T Consensus 159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvd 238 (273)
T PF01459_consen 159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVD 238 (273)
T ss_dssp EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEE
T ss_pred cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEc
Confidence 9999998888888 999999996567899999999999999999999999999999999999999976669999999
Q ss_pred CCceEEEEEEEeecCCeEEEEEEEEecccccCCceeE
Q 023981 231 NAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFG 267 (274)
Q Consensus 231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G 267 (274)
++|.|+++||++|+|+++|++|+++|++ +..||||
T Consensus 239 s~g~v~~~~~~~l~~~~~l~ls~~~d~~--~~~~KfG 273 (273)
T PF01459_consen 239 SNGRVSASYEQKLNPGVTLTLSAELDHK--NNNHKFG 273 (273)
T ss_dssp TTSEEEEEEEEEECTTEEEEEEEEECTT---C-EEEE
T ss_pred CCCEEEEEEEEecCCCcEEEEEEEEccC--CCCCCcC
Confidence 9999999999999999999999999997 4489998
No 6
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-36 Score=261.82 Aligned_cols=255 Identities=16% Similarity=0.229 Sum_probs=211.8
Q ss_pred CCCCcccccccccccccccCCCCcceEEEEE----------------eCCCCcEEEEEEEecCceeeEEEEEEEeecCeE
Q 023981 3 KGPGLYTDIGKKARDLLYKDYQSDHKFTITT----------------YSPTGVAITSSGTKKGELFLADVNTQLKNKNIT 66 (274)
Q Consensus 3 ~~P~~f~dl~K~akDll~~~y~~~~~l~~~~----------------~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 66 (274)
.||++|++|+++|+ +++.-+ ++.+++++. ..+.|+.|..+++ |.+++.|..+.+.
T Consensus 28 ~Npgt~e~L~~~~~-~~p~~~-~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty~-------~~~q~~~~~~~~i 98 (308)
T KOG3296|consen 28 LNPGTVEELHSEAS-VDPTLS-EGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTYV-------YTFQASPTEAFLI 98 (308)
T ss_pred CCcHHHHHhhhhhc-cCceee-cceEeeecccccCceEeccceecccCccccceecccee-------eeeccccCCCcce
Confidence 58999999999997 444332 234444443 3333444444332 4444455555689
Q ss_pred EEEEEcCCCceEEEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCeEEEEEEE-------ecC
Q 023981 67 TDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVI-------GTN 138 (274)
Q Consensus 67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~~~s~v~-------~~~ 138 (274)
+.+.+|++|++++++.++ |.++|+.++..|+++.+ .++.|+..++++.+.+..+. .+|.+..++++ +||
T Consensus 99 l~G~vD~~Gslna~l~~~-l~~~Lr~K~~~q~~~~k--~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~ 175 (308)
T KOG3296|consen 99 LRGDVDNDGSLNARLIHQ-LTDNLRSKVALQIQQSK--EVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTP 175 (308)
T ss_pred EEEecCCCCchhheeecc-cchhhHHHHHHHhcchh--hhccccccceecccccccccccCcccccchHHHHHHHhhhcc
Confidence 999999999999999999 99999999888876533 58999999999999999877 68886566765 399
Q ss_pred ccEEeEEEEEEC-CCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEE
Q 023981 139 VLSLGTDLSFDS-KSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQH 217 (274)
Q Consensus 139 ~~~lG~e~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y 217 (274)
+|++|+|+.|+. +.......+.++||...+|.++++++. ..++++||||..++++.|+|++++.+-+++..+++++|
T Consensus 176 ~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~ 253 (308)
T KOG3296|consen 176 RLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGY 253 (308)
T ss_pred cccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEe
Confidence 999999999998 445677888999999999999999984 37899999999999999999999998889999999999
Q ss_pred ee-CCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 218 IL-DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 218 ~~-d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
++ .+++.+||+|||+|.|++++|+||.++++|.+|+++||. +.++|||+||+|.
T Consensus 254 ~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~--k~~~~~G~gl~~~ 308 (308)
T KOG3296|consen 254 DLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHV--KNDFKFGFGLTIG 308 (308)
T ss_pred eccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeeccc--ccccccceeEEeC
Confidence 98 678999999999999999999999779999999999995 8899999999974
No 7
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=99.84 E-value=2.9e-20 Score=147.58 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=113.6
Q ss_pred CCCCccccccccc-ccccccCCCC-cceEEEEEeCCCCcEEEEEEE---ecCceeeEEEEEEEeecCeEEEEEEcCCCce
Q 023981 3 KGPGLYTDIGKKA-RDLLYKDYQS-DHKFTITTYSPTGVAITSSGT---KKGELFLADVNTQLKNKNITTDLKVDTASNL 77 (274)
Q Consensus 3 ~~P~~f~dl~K~a-kDll~~~y~~-~~~l~~~~~~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~g~l 77 (274)
.|||+||+|+|+| ||++.+.|.| |.|++++....-+-.|..+++ +....+.+.+.+.|..+++++.+++|++|+|
T Consensus 2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l 81 (161)
T TIGR00989 2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV 81 (161)
T ss_pred cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence 6999999999999 9999999999 599999877433345555554 3344556777788887788999999999999
Q ss_pred EEEEEEccCCCCcEEEEEEEccCCCCceEEEEEeecceeeeEEEeCC-CCCeE-E--EEEEE-------ecCccEEeEEE
Q 023981 78 FTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLT-ANPIV-N--FSAVI-------GTNVLSLGTDL 146 (274)
Q Consensus 78 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~-~--~s~v~-------~~~~~~lG~e~ 146 (274)
+++++++ |.++++.|+++|+.+.+ ...+|.++||.+.|+++.++ .||.+ + +++++ +||+|+||+|+
T Consensus 82 ~ar~~~~-~~~~~~~K~~~Q~~~~~--~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~ 158 (161)
T TIGR00989 82 STRLNYR-WGDRTISKVQFQISGGQ--PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEA 158 (161)
T ss_pred EEEEEEe-eCcceeEEEEEEecCCC--CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcceeeeeee
Confidence 9999999 99999999999975422 25666666666667777766 57875 3 25664 49999999999
Q ss_pred EEE
Q 023981 147 SFD 149 (274)
Q Consensus 147 ~~~ 149 (274)
.|+
T Consensus 159 ~yq 161 (161)
T TIGR00989 159 LWQ 161 (161)
T ss_pred EeC
Confidence 985
No 8
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.47 E-value=9.5e-11 Score=103.68 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=129.3
Q ss_pred EEEEcc-CCCCcEEEEEEEccC---CCCceEEEEEeecc--eeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCC
Q 023981 80 TITVDE-PAPGLKTILSFKVPD---QRSGKVELQYLHDY--AGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKS 152 (274)
Q Consensus 80 ~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~ 152 (274)
|+++.. +.+.+.+.=...+.. ...-.++..|..+. .-+..+++-.. .++..... ..+++ -.++..+.+.
T Consensus 27 r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g--~l~~~~~~~~~~~~--~~k~~~~~~~ 102 (279)
T cd07305 27 RLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDG--NLNARIIHQLGDRL--RSKLQAQLQD 102 (279)
T ss_pred EEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCC--ceeEEEEeccCcce--EEEEEEEecC
Confidence 344333 666655544444322 23456888888887 66666665321 23333332 23444 4444444444
Q ss_pred CccceeeeEEeEEcCCeEEEEEEccC-----CceEEEEEEEEeCCceeEEEEEEEE--eccCccEEEEEEEEeeCCCCeE
Q 023981 153 GNFTKCNAGLSFNNADLIASLNLNNK-----GDSLAASYYHFVNPLTAVGAEVIHS--FSTTDNTITVGTQHILDPLTTL 225 (274)
Q Consensus 153 ~~~~~~~~~~~y~~~~~~~~~~~~~~-----~~~~~~sy~~kv~~~~~~g~e~~~~--~~~~~~~~~vg~~y~~d~~~~~ 225 (274)
.....+.+...|+++||++++++.+. ...+.++|.|+|+|++++|+|+.|. ...+.+..++|++|.- +++++
T Consensus 103 ~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~ 181 (279)
T cd07305 103 SKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIA 181 (279)
T ss_pred CCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEE
Confidence 45678999999999999999997643 1589999999999999999999999 5678899999999999 78999
Q ss_pred EEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEE
Q 023981 226 KARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLAL 270 (274)
Q Consensus 226 k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l 270 (274)
.+++++.+.+.++|-|+++|++.+..-.+.+.. ..+..+.+|.
T Consensus 182 s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~--~~es~~tvg~ 224 (279)
T cd07305 182 SGQLGAQGGLHLSYYRKLSDKLQLGVELELNLR--TRESTATLGY 224 (279)
T ss_pred EEEEcCCCeEEEEEEEEcccceEeeeeeeeccc--CCceeEEEEE
Confidence 999999999999999999997666555555543 3333444433
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=99.06 E-value=4.8e-07 Score=79.40 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=98.3
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEcc-CCceEEEEEEEEeCCceeEEEEEEEEeccCccE-----
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNN-KGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNT----- 210 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~----- 210 (274)
.++|.+=.+..+.... ....+.+.+.|..+++.+.+.+.. ....+.+||.|.+.|++.+|+|+.|+...++..
T Consensus 87 ~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~ 165 (273)
T PF01459_consen 87 SPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAG 165 (273)
T ss_dssp TTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEE
T ss_pred CcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEE
Confidence 6776665555544332 236788899999999999999874 135899999999999999999999998876665
Q ss_pred EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 211 ITVGTQHILDPLTTLKARV-NNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 211 ~~vg~~y~~d~~~~~k~kv-ds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
++++.+|.- ++.++.+++ ++.+.+.++|-|++++.+.+..-.+.+.. .....+.+|...
T Consensus 166 ~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~--~~~~~~~vG~~~ 225 (273)
T PF01459_consen 166 LSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLS--SRESTFTVGYQY 225 (273)
T ss_dssp EEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETT--CCEEEEEEEEEE
T ss_pred EEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeeccc--CCCceEEEEEEE
Confidence 555555554 699999999 67899999999999999999888888774 344555555543
No 10
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=98.90 E-value=2.2e-06 Score=75.73 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=113.8
Q ss_pred CCcEEEEEEEec--CceeeEEEEEEEeecCeEEEEEEcCC--CceEEEEEEccCCCCcEEEEEEEc--cCC--CCceEEE
Q 023981 37 TGVAITSSGTKK--GELFLADVNTQLKNKNITTDLKVDTA--SNLFTTITVDEPAPGLKTILSFKV--PDQ--RSGKVEL 108 (274)
Q Consensus 37 ~g~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~--g~l~~~~~~~~~~~glk~~~~~~~--~~~--~~~~~~~ 108 (274)
.|+.......-. .+.-.+.+++.|..+.+.+...++-. -.+...+.+. .+++-+-.++.+ ... ....+.+
T Consensus 88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~ 165 (276)
T cd07306 88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL 165 (276)
T ss_pred CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence 455555444322 34667778888877755555555443 2334444444 366655555543 111 1234678
Q ss_pred EEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEcCC-eEEEEEEccCCceEEEEE
Q 023981 109 QYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNAD-LIASLNLNNKGDSLAASY 186 (274)
Q Consensus 109 ~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~sy 186 (274)
+|.++.+.+..++. ..-.+.+|... +.+++++|+|+.|+...+ -..+++|++|.-++ +.+.+++++++ .+.++|
T Consensus 166 ~Y~~~d~~~s~~l~--~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~-~~~~~vg~~y~l~~~~~vkakv~~~g-~v~~~y 241 (276)
T cd07306 166 GYTNGDFELSLKLN--NGKTLRGSYFHKVSPRLAVGAKVTWYSGTN-ETTFAVGGQYALDPDALVKAKVNNDG-QLGLSY 241 (276)
T ss_pred EEecCCeEEEEEEC--CCCEEEEEEEEEcCCCeEEEEEEEEecCCC-CcEEEEEEEEEcCCCCEEEEEECCCc-eEEEEE
Confidence 88888776665553 23346677665 689999999999997654 36899999998664 99999998765 999999
Q ss_pred EEEeCCceeEEEEEEEEecc---CccEEEEE
Q 023981 187 YHFVNPLTAVGAEVIHSFST---TDNTITVG 214 (274)
Q Consensus 187 ~~kv~~~~~~g~e~~~~~~~---~~~~~~vg 214 (274)
.|+++|++.+....+.+... +...+.+|
T Consensus 242 ~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~ 272 (276)
T cd07306 242 QHKLRPGVTLTLSAGFDAKNLNQGGHKFGLS 272 (276)
T ss_pred EEEcCCCcEEEEEEEeeccCcCCCCCeEEEE
Confidence 99999998888777776544 44444444
No 11
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=98.71 E-value=1.9e-05 Score=69.72 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=97.2
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccC--ccEEEEE
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTT--DNTITVG 214 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~--~~~~~vg 214 (274)
.+++.+=.++.++.... .....+-..|+++++.+.+.+.+.+ -+..++.+.+.+++.+|+|+.|+..++ +..+.++
T Consensus 88 ~~glk~~~~~~~~~~~~-~~~~q~~~~y~~~~~~~~l~~~~~g-p~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~ 165 (274)
T cd07303 88 SRGLKSTFDSSFSPNTG-KKNAKIKTGYKRINLGCDVDFDIAG-PLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVG 165 (274)
T ss_pred CCCeEEEEEEEECCCCc-cEEEEEeccEEcCCeeEEEEeecCC-CEEEEEEEEeecceEEEEEEEEeccccccccceEEE
Confidence 67888777777764332 3456677799999999999996444 677789999999999999999997442 2334444
Q ss_pred EEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 215 TQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 215 ~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
+.-.. ++..+-+++++.+.+.++|-||++|.+.+.+-.+.+.. .++..+.+|...+
T Consensus 166 y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~y~ 221 (274)
T cd07303 166 YKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAKYQ 221 (274)
T ss_pred EEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEEEe
Confidence 32222 57778899988899999999999998888777666653 4456666665543
No 12
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=97.97 E-value=0.00083 Score=53.92 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=48.7
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCc--------eEEEEEEEEeCCceeEEEEEEEE
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGD--------SLAASYYHFVNPLTAVGAEVIHS 203 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--------~~~~sy~~kv~~~~~~g~e~~~~ 203 (274)
++++..=.++. ....+...+.+-..|+++||++++++.+ ++ .+.+||.|.|+|++++|+|+.|.
T Consensus 90 ~~~~~~K~~~Q--~~~~~~~~~Q~e~DY~G~Dft~~lk~~N-p~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq 161 (161)
T TIGR00989 90 GDRTISKVQFQ--ISGGQPDMCQFEHDHLGDDFSASLKAIN-PSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ 161 (161)
T ss_pred CcceeEEEEEE--ecCCCCceEEEEEEecCCeEEEEEEEcC-cccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence 45544444433 3333446677778999999999999985 32 67999999999999999999984
No 13
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.035 Score=48.80 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=72.3
Q ss_pred EEEEEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEc-CCeEEEEEEccCCceEE
Q 023981 106 VELQYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNN-ADLIASLNLNNKGDSLA 183 (274)
Q Consensus 106 ~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~ 183 (274)
+.+.|..+.+.+...++ +.-.+..|... +...+..|.++.|..... -+.++++.+|.- ++..+.+++++ ...+.
T Consensus 168 ~~lgy~~~d~~l~~~~n--n~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn-~g~~g 243 (281)
T KOG3126|consen 168 AALGYTTEDFTLHLNLN--NGTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNN-AGLAG 243 (281)
T ss_pred EEEEeecCCcEEEEEec--ccchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecC-Cceee
Confidence 56666666655544442 22222333322 355589999999987765 578999999974 56778999985 45999
Q ss_pred EEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEee
Q 023981 184 ASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHIL 219 (274)
Q Consensus 184 ~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~ 219 (274)
+.|-|++.|.+.++...+.+...-...-.+|..+.|
T Consensus 244 l~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~ 279 (281)
T KOG3126|consen 244 LGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL 279 (281)
T ss_pred EEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence 999999999977777777765432111334444444
No 14
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00018 Score=63.63 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=95.1
Q ss_pred cCccEEeEEEEEECCC------------CccceeeeEEeEEcCCeEEEEEEcc-C---CceEEEEEEEEeCCceeEEEEE
Q 023981 137 TNVLSLGTDLSFDSKS------------GNFTKCNAGLSFNNADLIASLNLNN-K---GDSLAASYYHFVNPLTAVGAEV 200 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~------------~~~~~~~~~~~y~~~~~~~~~~~~~-~---~~~~~~sy~~kv~~~~~~g~e~ 200 (274)
-..-.+.+.+.++... ++...+..-..|+..|+++++...+ + -..+.++|.|.+++++++|+|+
T Consensus 104 D~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El 183 (308)
T KOG3296|consen 104 DNDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGEL 183 (308)
T ss_pred CCCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccccccccee
Confidence 5556777777776432 2344577778899999999888763 1 1367789999999999999999
Q ss_pred EEEe--ccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccc-cCCceeEEEEEE
Q 023981 201 IHSF--STTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAI-EKSAKFGLALAL 272 (274)
Q Consensus 201 ~~~~--~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~-~~~~K~G~~l~~ 272 (274)
.|.. ...++.+++++||.. .....-+.+...|.-...| +|+.+++......+.|.. + +...-+++++.+
T Consensus 184 ~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~y~-~r~~~~~~~~ve~~~~~~-~~~~~~t~a~~~~l 255 (308)
T KOG3296|consen 184 LYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLTGTYY-QRAVEKLQMGVEFETNTR-LQSTDVTAAYGYDL 255 (308)
T ss_pred EeccCCCccccceeeeeeeee-cceeeEEecccccceehhh-hhhhhhhccceeEeeecc-cCCcceEEEEEeec
Confidence 9998 457899999999999 5666666777766655444 466677777777777663 2 234555555543
No 15
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=92.49 E-value=8.4 Score=35.26 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=34.4
Q ss_pred EEcCCceEEEEEEEeecCCeEEEEEEEEeccccc------CCceeEEEEEEc
Q 023981 228 RVNNAGIASALIQHEWRPKSLFTISGEVDTKAIE------KSAKFGLALALK 273 (274)
Q Consensus 228 kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~------~~~K~G~~l~~~ 273 (274)
+-|....+++.++.++++.+.+.++....-++-. ..+.+++++.++
T Consensus 329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~ 380 (381)
T PF10082_consen 329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ 380 (381)
T ss_pred ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence 7777888999999999998888888776654321 236888888764
No 16
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=90.87 E-value=3.8 Score=35.77 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=52.2
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEE------cCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEE
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFN------NADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIH 202 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~ 202 (274)
..+|.+|+|+-|-.... --..+.++||. +..+++++++++-..-+..+|--|.++.+++.+++.+
T Consensus 189 ~~r~S~GaE~yys~~~k-s~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~~SrfdF 259 (260)
T PF12519_consen 189 YGRFSAGAELYYSALNK-SPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAFCSRFDF 259 (260)
T ss_pred cceEeeccEEEEEeecc-CCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceEEeeccc
Confidence 44999999999976543 33577888995 3569999999986568999999999999988887654
No 17
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=90.20 E-value=7.4 Score=36.77 Aligned_cols=76 Identities=11% Similarity=-0.062 Sum_probs=49.8
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEc---CCceEEEEEEEeecCCeEEEEEEEE
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVN---NAGIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvd---s~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
+..+..+++|+++|++.+...+.|..=++=..+.+-.. . ....+....+ +.+.+++.-++++++.+++..+...
T Consensus 285 P~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~--~-~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiay 361 (440)
T COG2067 285 PASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT--F-GKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAY 361 (440)
T ss_pred CcEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc--C-CCccccccccccccccEEeeeceeEcCccceEeeeeee
Confidence 56889999999999999999999986443333333222 2 3334444333 5566666666677666666666666
Q ss_pred ec
Q 023981 256 DT 257 (274)
Q Consensus 256 d~ 257 (274)
|.
T Consensus 362 D~ 363 (440)
T COG2067 362 DQ 363 (440)
T ss_pred cC
Confidence 65
No 18
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=90.14 E-value=7.3 Score=36.77 Aligned_cols=76 Identities=11% Similarity=-0.055 Sum_probs=47.8
Q ss_pred CCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCC--CeEEEEEcCCceEEEEEEEeecCCeEEEEEEEE
Q 023981 178 KGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPL--TTLKARVNNAGIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 178 ~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~--~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
.+..+.++..|+++|++.+.+.+.|..=+.-..+.+- +. +.. ...--.-.+.+.+++..++++++.++|..+...
T Consensus 285 ~P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~--~~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~y 361 (435)
T PRK10716 285 LPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKAT--SS-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAF 361 (435)
T ss_pred CCcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEE--eC-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeEe
Confidence 3568899999999999999999999643322222221 10 000 011112345667777777778777777777777
Q ss_pred e
Q 023981 256 D 256 (274)
Q Consensus 256 d 256 (274)
|
T Consensus 362 d 362 (435)
T PRK10716 362 D 362 (435)
T ss_pred c
Confidence 7
No 19
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=88.41 E-value=14 Score=34.91 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=51.6
Q ss_pred EEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEE---EccCCceEEEEEEEEeCCceeEEEEEEEEec
Q 023981 130 NFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLN---LNNKGDSLAASYYHFVNPLTAVGAEVIHSFS 205 (274)
Q Consensus 130 ~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~ 205 (274)
+.+... ..++|++.+.+.|-.=+ ++.+..+... ...-....+ .. ++..+.+.--|+++|++++-+-+.|+..
T Consensus 289 el~~~~~~~d~w~~~~s~~wT~WS-~f~~l~~~~~--~~~~~~~~~~~~yr-D~wt~a~G~~Y~~nd~~tlragiayD~s 364 (440)
T COG2067 289 ELSGQHKVADQWAIHGSVKWTDWS-SFDKLDFVFT--FGKTLFAKTEDGYR-DTWTVALGTTYKFNDQWTLRAGIAYDQS 364 (440)
T ss_pred EEeeeeccCCCeEEEEEEEEeecc-CCceEEEEEc--CCCccccccccccc-cccEEeeeceeEcCccceEeeeeeecCC
Confidence 444443 47888888888774221 2333332211 111111111 22 2445666667778888887777777643
Q ss_pred -------------cCccEEEEEEEEeeCCCCeEEE
Q 023981 206 -------------TTDNTITVGTQHILDPLTTLKA 227 (274)
Q Consensus 206 -------------~~~~~~~vg~~y~~d~~~~~k~ 227 (274)
.....+++|..|+++++..+.+
T Consensus 365 ~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~ 399 (440)
T COG2067 365 PSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA 399 (440)
T ss_pred CCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence 2234577788888877776654
No 20
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=84.45 E-value=32 Score=31.38 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=53.7
Q ss_pred eeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccC------CceeE
Q 023981 194 TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEK------SAKFG 267 (274)
Q Consensus 194 ~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~------~~K~G 267 (274)
+.+.+.+.|.+. ..+++++.+...+.+....-+--...-.+++.+.|+|++++.+.+.+.....+..+ .+.+|
T Consensus 259 ~~~~~~l~w~pt-~~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~ 337 (381)
T PF10082_consen 259 PSWDASLTWSPT-PKTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQGSDREDDTYSAG 337 (381)
T ss_pred eEEEEEEEEecc-CceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcCCCCceeeEEEEE
Confidence 667777777764 56788888888884442333333333557888899999999999998887765532 25666
Q ss_pred EEEEEc
Q 023981 268 LALALK 273 (274)
Q Consensus 268 ~~l~~~ 273 (274)
+++...
T Consensus 338 ~~~~y~ 343 (381)
T PF10082_consen 338 LGLTYR 343 (381)
T ss_pred EEEEEE
Confidence 666654
No 21
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=84.44 E-value=31 Score=31.18 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=42.5
Q ss_pred CccEEEEEEEEeeCCCCeEEEEEcCC--------------ceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 207 TDNTITVGTQHILDPLTTLKARVNNA--------------GIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 207 ~~~~~~vg~~y~~d~~~~~k~kvds~--------------g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
....+.+|++|++.++..++++++.. ..+.+.|+.++.++..+.++..=|..++++.+-|+|.+.+
T Consensus 236 ~~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l 315 (319)
T PF11383_consen 236 NTWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL 315 (319)
T ss_pred ceEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence 44456677777776677777666542 3377778888877777777776666555555555555443
No 22
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=83.95 E-value=36 Score=31.52 Aligned_cols=80 Identities=9% Similarity=-0.064 Sum_probs=50.7
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEeccC-ccEEEEEEEEee---CCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEE
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT-DNTITVGTQHIL---DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGE 254 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~-~~~~~vg~~y~~---d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~ 254 (274)
+..+.+++.+++++++.+.++++|..=+. +........... .....+.-.-.+.+.+.+..+.+++|.++|..+..
T Consensus 269 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G~~ 348 (427)
T PF03349_consen 269 PASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAGYA 348 (427)
T ss_dssp -EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEE
T ss_pred ceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEEEE
Confidence 56899999999999999999999975322 211111211110 01233444455667788888888888888888888
Q ss_pred Eecc
Q 023981 255 VDTK 258 (274)
Q Consensus 255 ~d~~ 258 (274)
.|..
T Consensus 349 y~~s 352 (427)
T PF03349_consen 349 YDSS 352 (427)
T ss_dssp EEE-
T ss_pred Eecc
Confidence 7764
No 23
>PRK10993 outer membrane protease; Reviewed
Probab=81.23 E-value=41 Score=30.29 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=95.7
Q ss_pred EEEEEcCCCceEEEEEEccCCCCcEEEEEEE--ccCCCCceEEE--------EEeecceeeeEEEeCCCCCeEEE-EEEE
Q 023981 67 TDLKVDTASNLFTTITVDEPAPGLKTILSFK--VPDQRSGKVEL--------QYLHDYAGISTSVGLTANPIVNF-SAVI 135 (274)
Q Consensus 67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~v~l~~~p~~~~-s~v~ 135 (274)
+.-++++..-|+++++.+ +.|.|++..... +.........- .|.+...+-+..++.-+.-+++. --++
T Consensus 63 LdW~~~n~~iik~~~~~~-~~~~lsl~a~gw~~l~s~~G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~w~l 141 (314)
T PRK10993 63 LDWKIKNAAIIKGDINWD-LLPRLSLGASGWTTLASGGGHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKGWLL 141 (314)
T ss_pred eeccccCceEEEeecccc-cccceEEeeeEEEEEecCCCccccccccCCCCCCCcceecCCCCchhhhhhcceecceeee
Confidence 444555666688888888 999999888754 33211100111 13444444344343211222332 2223
Q ss_pred ecCccEEeEEEEEECCCCccceeeeEEeEE--cC---CeEEEEEEccCCceEEEEEEEEeC-CceeEEEEEEEEeccCcc
Q 023981 136 GTNVLSLGTDLSFDSKSGNFTKCNAGLSFN--NA---DLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTTDN 209 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~--~~---~~~~~~~~~~~~~~~~~sy~~kv~-~~~~~g~e~~~~~~~~~~ 209 (274)
.-++..+|.-+.|+...- +-.+.++.|. .. +.+.+ + +++ ....+|-|+.. |.+-++++..+ . .-
T Consensus 142 ~~~~yklG~~aGyqy~~~--sw~A~GG~y~Y~~~~~r~~~g~--f-Pd~-~~~I~Y~Q~f~~pyiGL~g~y~~--~--~~ 211 (314)
T PRK10993 142 QNPNYRLGVMAGYQETRF--SWTAYGGSYIYSNGGFRDDIGT--F-PDG-ERGIGYKQRFKMPYIGLTGSYRY--D--DF 211 (314)
T ss_pred cCCCceeeeEeeeEEEec--eeEccCceEEcCCCCCCCCccc--c-CCC-ccceeeEEEecceeeeEEEEEEe--c--cE
Confidence 578888888888886543 2233444443 33 22222 2 333 67789999985 44545444443 2 23
Q ss_pred EEEEEEEEee-----------CCCCeEEEEEcCCce--EEEEEEEeecCCeEEEEEEEEec
Q 023981 210 TITVGTQHIL-----------DPLTTLKARVNNAGI--ASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 210 ~~~vg~~y~~-----------d~~~~~k~kvds~g~--v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
.+....+|.. .++.++|-++++.-- +.+.....++|++++-+++....
T Consensus 212 ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~~ 272 (314)
T PRK10993 212 EFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYNR 272 (314)
T ss_pred EEeeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEEE
Confidence 3333333321 134566665555422 45666677888888888776654
No 24
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=79.22 E-value=61 Score=33.08 Aligned_cols=99 Identities=9% Similarity=0.035 Sum_probs=64.7
Q ss_pred ecCccEEeEEEEEECCCCccceeeeEEeEEcCCe-EEEEEE---------------------ccCCceEEEEEEEEeCCc
Q 023981 136 GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADL-IASLNL---------------------NNKGDSLAASYYHFVNPL 193 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~---------------------~~~~~~~~~sy~~kv~~~ 193 (274)
..+.|.+.+++.|+.....+.+.++.++|+.+.. .+.+.. ......+.+|..-+++++
T Consensus 611 ~~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 690 (778)
T PRK03761 611 ISDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADR 690 (778)
T ss_pred ecCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCc
Confidence 3788999999999988888888888888876554 222211 000135667777778888
Q ss_pred eeEEEEEEEEecc-CccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecC
Q 023981 194 TAVGAEVIHSFST-TDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRP 245 (274)
Q Consensus 194 ~~~g~e~~~~~~~-~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~ 245 (274)
|.+.+...|++.. +.....+|.+|.= -.+.+.++|++.+.+
T Consensus 691 w~~~g~~~ydl~~~~~~~~~~Gl~Y~~-----------~Cw~~~~~~~r~~~~ 732 (778)
T PRK03761 691 WSIVGAYYYDTKANKPAEQLLGLQYNS-----------CCWAIGVGYERKLTG 732 (778)
T ss_pred EEEEEEEEeeCcCChhhhhhcCeeecC-----------ceEEEEEEEEEEecc
Confidence 8888888887753 3334555666632 245667777776643
No 25
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=78.43 E-value=56 Score=30.20 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=15.8
Q ss_pred EEEEcCCceEEEEEEEeecCCeEEEEEEEE
Q 023981 226 KARVNNAGIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 226 k~kvds~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
+.+++.=..+.+.+.+++.|++.+.+..+.
T Consensus 263 ~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~ 292 (427)
T PF03349_consen 263 EVDLDLPASLSLGVAYRFTDKLLLSADYEW 292 (427)
T ss_dssp EEEEEB-EEEEEEEEEESSSSEEEEEEEEE
T ss_pred eeeeeeceeEEEEEEEecCCCEEEEEEEEE
Confidence 344444455566666666666655555443
No 26
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=78.41 E-value=47 Score=29.29 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=40.9
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc------------CCceEEEEEEEEeCCceeEEEEEEEEec-------cCccEEEEEEE
Q 023981 156 TKCNAGLSFNNADLIASLNLNN------------KGDSLAASYYHFVNPLTAVGAEVIHSFS-------TTDNTITVGTQ 216 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~-------~~~~~~~vg~~ 216 (274)
..+.+++.|....+.+.+.... +...+.++.-+++++++.+.+...+... .....+.+|++
T Consensus 201 ~~~~~ga~Y~~~~~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~ 280 (329)
T cd00342 201 RAYGAGASYDFGGLKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGAD 280 (329)
T ss_pred EEEEEEEEEEEccEEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEe
Confidence 3455566665555555443211 1124455555677766777776665432 13457888888
Q ss_pred EeeCCCCeEEE
Q 023981 217 HILDPLTTLKA 227 (274)
Q Consensus 217 y~~d~~~~~k~ 227 (274)
|.+.+.+.+-+
T Consensus 281 Y~~~~~~~l~~ 291 (329)
T cd00342 281 YALSKRTDLYA 291 (329)
T ss_pred Eeeccchhhee
Confidence 88876655543
No 27
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=77.02 E-value=23 Score=32.26 Aligned_cols=61 Identities=7% Similarity=0.106 Sum_probs=38.3
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCC--ce-EEEEEEEe
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA--GI-ASALIQHE 242 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~--g~-v~~~~~~~ 242 (274)
.....+-.++++++.+..+..+..... ..-.+..+|.+++...+++++++. +. +++.|+.+
T Consensus 315 ~~~~~~gk~l~~~l~i~~~~~~~~~~~-~~~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 315 DTSVTVGKYLSDRLYISYQFGVDLGGS-QTGEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred ceEEEEEEecCCCEEEEEEEeecCCCC-ceEEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 445555666677777777655553222 124666778887888888888555 54 66666554
No 28
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=75.96 E-value=47 Score=28.02 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=23.0
Q ss_pred eEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 234 IASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 234 ~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
.++......++|++.+.++...+.. ....-.|.++.+
T Consensus 210 ~~~~gv~y~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 246 (248)
T PF13557_consen 210 YLGPGVSYQLSPNLSLDAGVGRGLA--ARNTFEGNGVQL 246 (248)
T ss_pred EEEEEEEEEEcCCeEEEEEEEeeee--ccceeeeeEEEE
Confidence 3666667777777777777766662 334555555554
No 29
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=73.43 E-value=36 Score=27.89 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=13.7
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEe
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSF 204 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~ 204 (274)
.+...|..++++++.+-.++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~~ 153 (210)
T PF04338_consen 130 RFGLDYRWKISDNLSLTQTLSYQP 153 (210)
T ss_pred EEEEEEEEEcCCCEEEEEEEEEEE
Confidence 444555556666666666555543
No 30
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=72.11 E-value=66 Score=27.97 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=30.0
Q ss_pred CccEEEEEEEEeeCCCCeEEEEEcC----------CceEEEEEEEeecCCeEEEEEE
Q 023981 207 TDNTITVGTQHILDPLTTLKARVNN----------AGIASALIQHEWRPKSLFTISG 253 (274)
Q Consensus 207 ~~~~~~vg~~y~~d~~~~~k~kvds----------~g~v~~~~~~~l~~~~~l~ls~ 253 (274)
....+.+++.|.+ +..++.+.... .-.+++.++++|+|++++-...
T Consensus 248 ~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y 303 (311)
T PF13609_consen 248 DQDAYYVGAAYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEY 303 (311)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred cceEEEEEEEEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEE
Confidence 3456677777777 56666665542 1347888888888887775443
No 31
>PF05275 CopB: Copper resistance protein B precursor (CopB); InterPro: IPR007939 This family consists of several bacterial copper resistance proteins. Copper is essential and serves as a cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to free radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels [] and has been shown to act as an ATPase (3.6.1.3 from EC).; GO: 0005507 copper ion binding, 0006878 cellular copper ion homeostasis, 0009279 cell outer membrane
Probab=71.91 E-value=46 Score=28.19 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=52.0
Q ss_pred eEEEEEEEEeCC--ceeEEEEEEEEeccCccEEEEEEEEeeCC---CCeEEEEEcCCceEE----EEEEEeecCCeEEEE
Q 023981 181 SLAASYYHFVNP--LTAVGAEVIHSFSTTDNTITVGTQHILDP---LTTLKARVNNAGIAS----ALIQHEWRPKSLFTI 251 (274)
Q Consensus 181 ~~~~sy~~kv~~--~~~~g~e~~~~~~~~~~~~~vg~~y~~d~---~~~~k~kvds~g~v~----~~~~~~l~~~~~l~l 251 (274)
.+.+-|.|-++| .+++|+...+......+-+.+|.+-.. | ..-..+-|+++|.++ +.|+..|+..+-|.=
T Consensus 56 e~q~lysr~is~fwd~q~GvR~d~~~~~~r~~~~iG~qGLA-PY~FE~da~lyvs~~G~~~~r~e~eydlllTqrLiLqP 134 (210)
T PF05275_consen 56 EIQALYSRAISPFWDVQAGVRYDFRPGPDRTWAVIGVQGLA-PYWFEVDATLYVSEDGDVAARLEAEYDLLLTQRLILQP 134 (210)
T ss_pred eeeeecccccCccceEEEEeEeecCCCCCceEEEEEEEEcC-cceEeeeeeEEEcCCCcEEEEEEEEeeeeeeeeEEEEE
Confidence 678889999998 488888877776656777888887433 2 244566678887654 455556666666665
Q ss_pred EEEEec
Q 023981 252 SGEVDT 257 (274)
Q Consensus 252 s~~~d~ 257 (274)
..+++.
T Consensus 135 ~~E~~~ 140 (210)
T PF05275_consen 135 RLEANA 140 (210)
T ss_pred eEEEEE
Confidence 655555
No 32
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=71.68 E-value=71 Score=28.13 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=59.6
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc---------------CCceEEEEEEEEeCCceeEEEEEEEEecc--------CccEEE
Q 023981 156 TKCNAGLSFNNADLIASLNLNN---------------KGDSLAASYYHFVNPLTAVGAEVIHSFST--------TDNTIT 212 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~---------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~~--------~~~~~~ 212 (274)
..|.+++.|..+.+.+.+.... +...+.++.-.... .+.+++...+.... ....+.
T Consensus 162 ~~~~~~~~Y~~~~~~l~a~y~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~-~~~v~a~y~~~~~~~~~~~~~~~~~~~~ 240 (329)
T cd00342 162 RGYGAGLSYENGPLSLGAAYDQQRNGGGAAGGAAGATSQRAYGAGASYDFG-GLKLGAGYTNTRNDNGGGGGSAKFNGYE 240 (329)
T ss_pred ceEEEEEEEccCCEEEEEEEEEeeCCCcccccccccceEEEEEEEEEEEEc-cEEEEEEEEEEEccCCCCCCceEEEEEE
Confidence 3466666666655555443221 11233344433444 47777776665321 235688
Q ss_pred EEEEEeeCCCCeEEEEEcC------------CceEEEEEEEeecCCeEEEEEEEEec
Q 023981 213 VGTQHILDPLTTLKARVNN------------AGIASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 213 vg~~y~~d~~~~~k~kvds------------~g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
+|+.|.+.+...+.+-... .-.+.+.+++.++|.+.+-.....+.
T Consensus 241 lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~~~l~~~y~~~~ 297 (329)
T cd00342 241 LGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSKRTDLYAEYGYQK 297 (329)
T ss_pred EeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeeccchhheeeeeeee
Confidence 8999999656666664421 23578889999999887776655443
No 33
>PRK15318 intimin-like protein SinH; Provisional
Probab=67.93 E-value=80 Score=31.58 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=26.6
Q ss_pred cCccEEeEEEEEECC-CCccceeeeEEeEEcCCeEEEEE
Q 023981 137 TNVLSLGTDLSFDSK-SGNFTKCNAGLSFNNADLIASLN 174 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~ 174 (274)
..+|.+|+.+.||.. .+...+..+|+.|-.+.+.+++.
T Consensus 167 ~~~wMlG~NaFyD~d~s~~h~R~GlGaE~w~dyLkLsAN 205 (730)
T PRK15318 167 FGKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGN 205 (730)
T ss_pred CCCEEEEeEEEEccCCCCCcceeeeeeEEEecceEEEEE
Confidence 678889999999864 34466777887777665555443
No 34
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=65.71 E-value=94 Score=27.24 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=51.7
Q ss_pred ceeEEEEEEEEeccCccEEEEEEEEeeCCC-----CeEEEEEcCC-ceEEEEEEEeecCCeEEEEEEEEe
Q 023981 193 LTAVGAEVIHSFSTTDNTITVGTQHILDPL-----TTLKARVNNA-GIASALIQHEWRPKSLFTISGEVD 256 (274)
Q Consensus 193 ~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~-----~~~k~kvds~-g~v~~~~~~~l~~~~~l~ls~~~d 256 (274)
++.+|+|+=|...++....+.|.||.--+. .++.+.+|-- |.|+..|-.+-.+..+| |..+|
T Consensus 191 r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~--~Srfd 258 (260)
T PF12519_consen 191 RFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAF--CSRFD 258 (260)
T ss_pred eEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceE--Eeecc
Confidence 799999999999999999999999986333 7888999986 99999999888777666 55444
No 35
>PF14052 Caps_assemb_Wzi: Capsule assembly protein Wzi
Probab=64.50 E-value=61 Score=30.54 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=29.6
Q ss_pred CceEEEEEE-EeecCCeEEEEEEEEeccccc-CCceeEEEEEEc
Q 023981 232 AGIASALIQ-HEWRPKSLFTISGEVDTKAIE-KSAKFGLALALK 273 (274)
Q Consensus 232 ~g~v~~~~~-~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~ 273 (274)
...+.+.|+ ..+.+.+.+.++..+|.-++. ....+|++|.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~g~~l~~~ 442 (443)
T PF14052_consen 399 SFYLELSYQSPSLNGGWSLGASVGYDNGDIPLYDDNFGAGLSVR 442 (443)
T ss_pred EEEEEEEEEcccccCCEEEEEEEEEecccccccCCCCCcEEEEe
Confidence 345666674 677788999999999986443 356677777654
No 36
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=64.43 E-value=1.2e+02 Score=28.02 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=18.3
Q ss_pred EEEEEEEeecCCeEEEEEEEEeccc
Q 023981 235 ASALIQHEWRPKSLFTISGEVDTKA 259 (274)
Q Consensus 235 v~~~~~~~l~~~~~l~ls~~~d~~~ 259 (274)
+.+.++.++.++-.|++++.-...+
T Consensus 255 ~~~~~~w~pt~~t~l~l~~sr~~~~ 279 (381)
T TIGR03014 255 GRLNADWMVTGKTSLNAAISRELAN 279 (381)
T ss_pred EEEEEEEcccCcEEEEEEEEeccCC
Confidence 6677888888887777777766643
No 37
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=64.10 E-value=1e+02 Score=27.16 Aligned_cols=134 Identities=14% Similarity=0.023 Sum_probs=64.9
Q ss_pred cCccEEeEEEEEECC-CCccceeeeEEeEEcCCeEEEEEEccCCceEEE-----EEEEEeCCceeEEEEEEEEecc-Ccc
Q 023981 137 TNVLSLGTDLSFDSK-SGNFTKCNAGLSFNNADLIASLNLNNKGDSLAA-----SYYHFVNPLTAVGAEVIHSFST-TDN 209 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----sy~~kv~~~~~~g~e~~~~~~~-~~~ 209 (274)
..+|.+|+-+.||.. .....+..+|+.|-.+.|.+++..---.+.... .|..++-.-+++.+ .+.+.. ..-
T Consensus 105 ~~~~~~G~N~FyD~~~~~~~~R~~~G~E~~~~~~~l~~N~Y~pls~~~~~~~~~~~~Er~~~G~Di~~--~~~lp~~~~~ 182 (280)
T PF11924_consen 105 NDNWMLGYNAFYDYDFSRNHQRLGLGAEYWSDYLDLRANGYFPLSDWKDSSDSEDYEERPANGYDIEV--GGRLPNYPQL 182 (280)
T ss_dssp ETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEE-S--EE-SSSTT-EEEE--EEEEEE--EEEETTEEEE
T ss_pred CCCeEEEeEEEEecCCCCCcceeeeeeEeEeccceeEeeeEEecCCccccCcccchhhhcccceeEEE--EEecCCCCCc
Confidence 488999999999963 234677888888877777666542100000000 11122222122222 222221 111
Q ss_pred EEEEEE-EEeeCCCCeEE--EEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 210 TITVGT-QHILDPLTTLK--ARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 210 ~~~vg~-~y~~d~~~~~k--~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
.+.+.+ +|..++-..+- ..-.+...+.+.++..+.|.+++.+.-..+... ..+..+++++++.
T Consensus 183 ~~~l~~~~y~g~~v~lf~~~~~~~~~~~~~~gl~y~p~p~lt~~~~~~~~~~~-~~~t~~~l~l~y~ 248 (280)
T PF11924_consen 183 GAYLKYEQYYGDNVDLFGSDNRQKNPHGVTLGLEYTPIPLLTLGAGYQDDNGR-GSDTFFGLNLNYP 248 (280)
T ss_dssp EEEEEEEEE-SSSB-TT-TTS-BSS-EEEEEEEEEEEETTEEEEEEEEEEGGG-EEEEEEEEEEEEE
T ss_pred ceEEEEEeecCCcccccCCccCcCCcceEEEEEEEEecCcEEEEEEEEccCCC-ccceEEEEEEEEe
Confidence 222222 44443200000 011223345566666777888888866555531 3467888887764
No 38
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=63.47 E-value=1.2e+02 Score=27.52 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=61.9
Q ss_pred cCccEEeEEEEEECCC-Ccc-------ceeeeEEeEEcC-CeEEEEEE----ccC------------CceEEEEEEEEeC
Q 023981 137 TNVLSLGTDLSFDSKS-GNF-------TKCNAGLSFNNA-DLIASLNL----NNK------------GDSLAASYYHFVN 191 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~-~~~-------~~~~~~~~y~~~-~~~~~~~~----~~~------------~~~~~~sy~~kv~ 191 (274)
...+++|+.+.|.... ..+ ....+...|+.+ +|.+..++ .++ -....++|=.+++
T Consensus 170 ~~~lslg~slk~~t~d~~~~~GSGs~d~~l~ln~s~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~g~~y~~~ 249 (319)
T PF11383_consen 170 HHGLSLGGSLKYPTGDSGRFTGSGSFDQALQLNYSYRYGSKHSLYATLGYTFRGDSDVLEGIPYRNNTWFGGLGYGYQLT 249 (319)
T ss_pred CceEEEEEEEEecCCCcccccCCccccceEEEEeeeccCCcceeeeeeeEEEecCcccccccccccceEEEEEEEEEEec
Confidence 5578999999988642 111 122333344444 55443332 111 1245677878889
Q ss_pred CceeEEEEEEEEec---------cCccEEEEEEEEeeCCCCeEEEEEcCCc
Q 023981 192 PLTAVGAEVIHSFS---------TTDNTITVGTQHILDPLTTLKARVNNAG 233 (274)
Q Consensus 192 ~~~~~g~e~~~~~~---------~~~~~~~vg~~y~~d~~~~~k~kvds~g 233 (274)
+++.+-+|+.+.-. +....+++|+||.+.+.+.+-..+-.|.
T Consensus 250 ~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~ 300 (319)
T PF11383_consen 250 ENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENL 300 (319)
T ss_pred CCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecc
Confidence 99999999888643 3567899999999977777766665554
No 39
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=63.34 E-value=34 Score=29.09 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCceEEEEEEEEeCCc--eeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEE----------cCC--------ceEEE
Q 023981 178 KGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARV----------NNA--------GIASA 237 (274)
Q Consensus 178 ~~~~~~~sy~~kv~~~--~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kv----------ds~--------g~v~~ 237 (274)
++.++.++|..|++++ ++.|..+.+......=..-|-+.|.||+...+.++- +.+ -++.+
T Consensus 60 ng~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~~yrPylk~~Y~fd~~~~~~~RYRy~~~~~~~~~~~~~~~~~~~~r~d~ 139 (218)
T PF06178_consen 60 NGNEFEISYRYKLNDNFTLQPGFSLESNSDGTQYRPYLKLGYKFDNGLSVSGRYRYDYQNYSSDDLDGDKDNNDRHRFDL 139 (218)
T ss_dssp -EEEEEEEE-EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEESS-EE-TTS-EE---EEEEEE
T ss_pred ceeEEEEEEEEEcCCCEEEecceEEEECCCccEEeeEEEEEEEecCCEEEEEEeecceEccCCcccCCccccCccEEEEE
Confidence 4668889999999987 555555554422111112222234444443333221 111 24556
Q ss_pred EEEEeecCCeEEEEEEE
Q 023981 238 LIQHEWRPKSLFTISGE 254 (274)
Q Consensus 238 ~~~~~l~~~~~l~ls~~ 254 (274)
-+-.++.+.+.|..-..
T Consensus 140 ~i~Y~~~~~~~~~y~~~ 156 (218)
T PF06178_consen 140 WIGYKFNDDWSLSYNPV 156 (218)
T ss_dssp EEEEE-SSSEEEEEEEE
T ss_pred EEEEEEcCCEEEEEEEE
Confidence 66666767776666655
No 40
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=61.52 E-value=1.5e+02 Score=28.02 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=12.8
Q ss_pred ecCccEEeEEEEEECCC
Q 023981 136 GTNVLSLGTDLSFDSKS 152 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~ 152 (274)
..++|++|+-+.++...
T Consensus 161 i~d~lSiG~G~~~~y~~ 177 (435)
T PRK10716 161 LNNAFSFGLGFNAVYAR 177 (435)
T ss_pred cCCcEEEEEeEEEEEEE
Confidence 48889999988766543
No 41
>PF01278 Omptin: Omptin family; InterPro: IPR000036 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belongs to the MEROPS family A26 (clan AF). The omptin family, comprises a number of novel outer membrane-associated serine proteases that are distinct from trypsin-like proteases in that they cleave polypeptides between two basically-charged amino acids []. The enzyme is sensitive to the serine protease inhibitor diisopropylfluoro-phosphate, to divalent cations such as Cu2+, Zn2+ and Fe2+ [], and is temperature regulated, activity decreasing at lower temperatures [, ]. Temperature regulation is most prominently shown in the Yersinia pestis coagulase/fibrinolysin protein, where coagulase activity is prevalent below 30 degrees Celsius, and fibrinolysin (protease) activity is prevalent above this point, the optimum temperature being 37 degrees []. It is possible that this assists in 'flea blockage' and transmission of the bacteria to animals []. The Escherichia coli OmpT has previously been classified as a serine protease with Ser(99) and His(212) as active site residues. The X-ray structure of the enzyme is inconsistent with this classification, and the involvement of a nucleophilic water molecule that is activated by the Asp(210)/His(212) catalytic dyad classifies this as a aspartic endopeptidase where activity is also strongly dependent on Asp(83) and Asp(85). Both may function in binding of the water molecule and/or oxyanion stabilisation. The proposed mechanism implies a novel proteolytic catalytic site [, ].; GO: 0004175 endopeptidase activity, 0006508 proteolysis, 0009279 cell outer membrane; PDB: 1I78_A 2X4M_C 2X55_A 2X56_A 4DCB_A.
Probab=61.45 E-value=1.2e+02 Score=27.07 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=92.6
Q ss_pred EEEEEcCCCc--eEEEEEEccCCCCcEEEEEEE--ccCCCCceEEEEEeec---------ceeeeEEEeCCCCCeEEEEE
Q 023981 67 TDLKVDTASN--LFTTITVDEPAPGLKTILSFK--VPDQRSGKVELQYLHD---------YAGISTSVGLTANPIVNFSA 133 (274)
Q Consensus 67 ~~~~~d~~g~--l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~v~l~~~p~~~~s~ 133 (274)
-+..|..+|. |.+.++.+ +.+++.+.+... +|...+..-.-++..+ ..+-+..++--..-+++...
T Consensus 39 SqLdW~~~n~~il~~~~~~~-~~~~l~l~~~g~~~~~~~sG~M~D~DWl~~~~~~~~T~~S~H~~t~l~~~~~~dl~~~~ 117 (294)
T PF01278_consen 39 SQLDWKIKNVPILKADISWD-LMPWLSLGASGWTGLPSGSGNMEDYDWLNPDQPDDWTHFSHHPDTRLNYANEFDLNIKY 117 (294)
T ss_dssp EEEEEEEEEEEEEEEEEEEE-CCTTEEEEEEEEEESSSEEEEEEEEE---TTSTTS-SEEEEECCEEEEEEEEEEEEEEE
T ss_pred eEEecccCCceEEEEEEEEE-ecCCEEEEEEEEEEecCCCCcEEeecccCCCCCCCCcccccCCcchhhhhheeeeeeeE
Confidence 3456777776 78888887 788988888664 4331111111111111 11112222211111233222
Q ss_pred EE-ecCccEEeEEEEEECCCCccceeeeEEeEEcCCeE-EEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEE
Q 023981 134 VI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLI-ASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTI 211 (274)
Q Consensus 134 v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~ 211 (274)
-+ ..+++.+|..+.|+....+.+.+.-...|..+.|. ..... +. +.-..+|=|++. ---+|.++.|... .-.+
T Consensus 118 ~~~~~~~~~i~~~aGyqy~~~~w~A~gG~y~Y~~~~~~~~~g~f-P~-~~~~IsY~Q~f~-~pyiGL~~~yr~~--~~~l 192 (294)
T PF01278_consen 118 WFLKEPNYRIGPMAGYQYTRFSWTAYGGYYQYSNGGFRDSSGTF-PD-GEKGISYKQRFP-MPYIGLAGSYRYN--RFEL 192 (294)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEEEEES-EEEETTTTSS-EEEE---T-T-CEEEEEEEEE-EEEEEEEEEEEET--TEEE
T ss_pred EEEcCCCEEEEEEcceEEEEeeEEeCCceEECCCCCcccccccC-CC-CcceeeeeeEEE-EEEEeEEEEEEcC--CEEE
Confidence 22 58888899988888654333333222334444311 12222 22 245678888874 2345555555543 2233
Q ss_pred EEEEEEee-----------CCCCeEEEEEcCCce--EEEEEEEeecCCeEEEEEEEEec
Q 023981 212 TVGTQHIL-----------DPLTTLKARVNNAGI--ASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 212 ~vg~~y~~-----------d~~~~~k~kvds~g~--v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
.+..+|.. -++.+++-++++..- +++.....++|++++-+.+..+.
T Consensus 193 s~~~k~s~~v~a~d~D~H~lR~l~F~d~~~~~~~~~~~~~~~Y~~tp~~~l~~e~~y~~ 251 (294)
T PF01278_consen 193 SASLKYSPWVRANDNDEHYLRNLTFRDKMKNSNYYSLSLNAGYYLTPNASLFVEGSYNK 251 (294)
T ss_dssp EEEEEEEEEEEEEEEEEECCCTEEEEEEEEEEEEEEEEEEEEEECCTTEEEEEEEEEEE
T ss_pred EEEEEEeEEeEeecchhHhhccCcchhhcCCcceEEEEEEEEEEeCCCeEEEEEEEEEE
Confidence 33333322 145777777765433 44555667788888888777654
No 42
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=60.33 E-value=1.1e+02 Score=27.49 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccC---------
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTT--------- 207 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~--------- 207 (274)
.++|.++.|..|-........ +..-....+.+.+.+. .+++|++.++++.+|-....
T Consensus 219 ~~~~~l~~~~~y~~~~~~~~~---~~~~~~~~~g~a~y~~-----------y~~~~~~~l~~R~E~~~d~~~~~~~~~~~ 284 (344)
T PF07642_consen 219 TDKLTLGLEYDYGWQDNGPDA---GGGGDASWYGAALYLS-----------YQFSDKWSLGVRYEYFDDKDGVGAIIGTG 284 (344)
T ss_pred CCcEEEEEEEEEEEecCCccc---CCCCCccEEEEEEEEE-----------EEcCCCEEEEEEEEEEECCCCcccccccc
Q ss_pred ------ccEEEEEEEEeeCCCCeEEEEE
Q 023981 208 ------DNTITVGTQHILDPLTTLKARV 229 (274)
Q Consensus 208 ------~~~~~vg~~y~~d~~~~~k~kv 229 (274)
-..++++..|++.++.++|.-+
T Consensus 285 ~~~~~~~~~~T~t~~y~p~~nl~iR~E~ 312 (344)
T PF07642_consen 285 TGNGFSYYALTLTLNYKPTPNLMIRPEY 312 (344)
T ss_pred CCCCcceEEEEEEEEEEECCCEEEEEEE
No 43
>PRK04423 organic solvent tolerance protein; Provisional
Probab=56.19 E-value=2.4e+02 Score=28.94 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=55.4
Q ss_pred ecCccEEeEEEEEECCCCccceeeeEEeEEcC-CeEEEEEEc---------cCCceEEEEEEEEeCCceeEEEEEEEEec
Q 023981 136 GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNA-DLIASLNLN---------NKGDSLAASYYHFVNPLTAVGAEVIHSFS 205 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~---------~~~~~~~~sy~~kv~~~~~~g~e~~~~~~ 205 (274)
..++|.+.+++.||...+.+...++.++|..+ ...+.+... .....+.+|...+++++|.+.+...|++.
T Consensus 627 ~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W~~~g~~~ydl~ 706 (798)
T PRK04423 627 INDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRWSAVGRYYYSLL 706 (798)
T ss_pred ecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCEEEEEEEEEeCc
Confidence 48889999999999876667677777788643 223332221 11246777888888888888888888875
Q ss_pred c-CccEEEEEEEEe
Q 023981 206 T-TDNTITVGTQHI 218 (274)
Q Consensus 206 ~-~~~~~~vg~~y~ 218 (274)
. +.....+|.+|.
T Consensus 707 ~~~~~e~~~GleY~ 720 (798)
T PRK04423 707 DKKPLEIIGGVQWD 720 (798)
T ss_pred CCcchhhhcCcEEc
Confidence 4 333445555553
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=53.13 E-value=2.8e+02 Score=28.67 Aligned_cols=100 Identities=15% Similarity=0.053 Sum_probs=67.5
Q ss_pred eeeEEeEEcCCeEEEEEEcc----CCc--eEEEEEEEEeCCceeEEEEEEEEec----------cCccEEEEEEEEeeCC
Q 023981 158 CNAGLSFNNADLIASLNLNN----KGD--SLAASYYHFVNPLTAVGAEVIHSFS----------TTDNTITVGTQHILDP 221 (274)
Q Consensus 158 ~~~~~~y~~~~~~~~~~~~~----~~~--~~~~sy~~kv~~~~~~g~e~~~~~~----------~~~~~~~vg~~y~~d~ 221 (274)
.-+|+.|+..+..+.+.+.. ++. ...+|+++.+++.|++++++..+.. .....+.++.+|.-++
T Consensus 593 ~~~G~e~~~r~~~~~~e~~~~~~g~g~k~g~r~~~~~~~nD~W~~~~~~~~~~~~tPlrA~~~gv~~~~~~~~~~yr~~e 672 (822)
T PRK14574 593 LRLGGEWTSRDHWVEGEISNQNYGNGNKVGARLSTWYDLNDHWRVGGQVERLAKDTPLRALKNKVTANSASAYVFWKADD 672 (822)
T ss_pred eeccceEEecCceEEEEeehhhcCCCCCcCceEEEEecCCCceeeeeeeecCCCCCCHHHHHcCCcceecceEEEEEEcc
Confidence 45777888888777775541 122 3667888899999999999998643 1344567777788776
Q ss_pred CCeEEEEEc----CCc----eEEEEEEEeec--CCeEEEEEEEEec
Q 023981 222 LTTLKARVN----NAG----IASALIQHEWR--PKSLFTISGEVDT 257 (274)
Q Consensus 222 ~~~~k~kvd----s~g----~v~~~~~~~l~--~~~~l~ls~~~d~ 257 (274)
...+...+. ||| .+++..+++|- |.+++.+...+..
T Consensus 673 ~r~~~~~~~~~~fsDgN~R~~~~~~~~~rl~~~p~~~~d~~~~~~~ 718 (822)
T PRK14574 673 KRDAELSVTPSRFSDGNNRWEYEFNGRQRIWTGPYLTADFNLGLAA 718 (822)
T ss_pred ceEEEeeeeecccCCCchhhhhhcceeEEeecCCeEEEecceEEee
Confidence 655555553 233 37788888873 6776666666555
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.51 E-value=2.2e+02 Score=28.86 Aligned_cols=103 Identities=12% Similarity=-0.021 Sum_probs=69.6
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc----CC--ceEEEEEEEEeCCceeEEEEEEEEec----------cCccEEEEEEEEee
Q 023981 156 TKCNAGLSFNNADLIASLNLNN----KG--DSLAASYYHFVNPLTAVGAEVIHSFS----------TTDNTITVGTQHIL 219 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~----~~--~~~~~sy~~kv~~~~~~g~e~~~~~~----------~~~~~~~vg~~y~~ 219 (274)
..+-+|+.|+..+.++.+.+.. .+ ....++..+.+++.|++++++..+.. .....+.++++|.-
T Consensus 534 ~~~g~G~e~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~nd~w~~~~~~~~~~~~~plra~~~~~~~~~~~~~~~~~~ 613 (765)
T PRK10049 534 RDWLAGVEWRSRDIWLEAELSERVFGHEHKPGARLSGWYDFNDNWRIGGSLERLSHRTPLRALKNGVTANGGQGYVRWYQ 613 (765)
T ss_pred EEEeeeeEEEecceeEEEEeeccccCCCCCcccEEEeeeccCCCeeeeceeecCCCCCCHHHHHcCCccccceEEEEEeE
Confidence 3466788888888888776531 12 13667889999999999999998643 13345667777777
Q ss_pred CCCCeEEEEEc----CC----ceEEEEEEEeec--CCeEEEEEEEEecc
Q 023981 220 DPLTTLKARVN----NA----GIASALIQHEWR--PKSLFTISGEVDTK 258 (274)
Q Consensus 220 d~~~~~k~kvd----s~----g~v~~~~~~~l~--~~~~l~ls~~~d~~ 258 (274)
++...+...+. || ..+++..+++|- |.+++.++..+...
T Consensus 614 ~e~~~~~~~~~~~~fsD~N~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 662 (765)
T PRK10049 614 NERREYGVSWAFSDFSDGNRRQEYSLSGQERLWSSPYLIVDFLPSLYYS 662 (765)
T ss_pred cceEEEEeeeeeecccCCchhhheeceeeEEeecCCeEEEeeceEEeec
Confidence 66655555443 22 338888888873 77777776666653
No 46
>PF04575 DUF560: Protein of unknown function (DUF560); InterPro: IPR007655 This is a family of hypothetical bacterial proteins.
Probab=51.90 E-value=1.6e+02 Score=25.57 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=47.0
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEec---------cCccEEEEEEEEeeCCCCeEEEEEcC-------------CceEEEE
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFS---------TTDNTITVGTQHILDPLTTLKARVNN-------------AGIASAL 238 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~---------~~~~~~~vg~~y~~d~~~~~k~kvds-------------~g~v~~~ 238 (274)
.+.+++-+.+++++++.+.+++... .....+.+++.|.++++..+-+-++- ...+.+.
T Consensus 119 G~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~~dg~~~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~sy~~~g~r~g 198 (285)
T PF04575_consen 119 GASLSWSYWLSPRWQLSGSLEYKRKRYRQRSDRDGDRYSASLTLIYAPNPRWYLFGGLDYGREDARDKSYSYDRYGLRLG 198 (285)
T ss_pred cEEEEEEEEcCCCeEEEEEeeeehhhcCccccCCccEEEEEEEEEEEcCCCcEEEEeEEEeeeccccccccceeeeEEEE
Confidence 4556666666777666666666532 12334455555555555444443332 1336777
Q ss_pred EEEeecCCeEEEEEEEEecccc
Q 023981 239 IQHEWRPKSLFTISGEVDTKAI 260 (274)
Q Consensus 239 ~~~~l~~~~~l~ls~~~d~~~~ 260 (274)
+.+.+.+++.+.+++..-.++.
T Consensus 199 ~~~~~~~g~~~~~~~~~~~r~y 220 (285)
T PF04575_consen 199 WSQEWPGGLSTRLSASYRRRDY 220 (285)
T ss_pred EEEEecCCeEEEEEEEEEeeec
Confidence 7888877888888777665444
No 47
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=51.07 E-value=1.5e+02 Score=24.90 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=31.4
Q ss_pred EEEEEEEeCCceeEEEEEEEEe---------------ccCccEEEEEEEEeeCCCCeEEEEEc
Q 023981 183 AASYYHFVNPLTAVGAEVIHSF---------------STTDNTITVGTQHILDPLTTLKARVN 230 (274)
Q Consensus 183 ~~sy~~kv~~~~~~g~e~~~~~---------------~~~~~~~~vg~~y~~d~~~~~k~kvd 230 (274)
...+-+++++++++++|..+.. +.....+..|..|.+.++..+.+.+.
T Consensus 168 ~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~gv~y~~~~~~~l~~~~~ 230 (248)
T PF13557_consen 168 NFALSYALTPKLSLGLEGYGYYDQLTDDKGNGVDNGSRQNSFYLGPGVSYQLSPNLSLDAGVG 230 (248)
T ss_pred EEEEEEEcCcceEEeEEeEEEEeeccccccCCccCCCccceEEEEEEEEEEEcCCeEEEEEEE
Confidence 3444557788888888887332 23556788888888866665555543
No 48
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=50.87 E-value=46 Score=30.39 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=34.8
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEecc--CccEEEEEEEEeeCC
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFST--TDNTITVGTQHILDP 221 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~--~~~~~~vg~~y~~d~ 221 (274)
.+.+..-+|+++++.+|+++.++... .+..+.+-.||.|++
T Consensus 299 ~l~a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~ 341 (342)
T PF05420_consen 299 SLRAAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDP 341 (342)
T ss_pred EEEEEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccC
Confidence 67788889999999999999998754 688888999998854
No 49
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=50.55 E-value=1.8e+02 Score=25.70 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=34.9
Q ss_pred ceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccc----cCCceeEE
Q 023981 193 LTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAI----EKSAKFGL 268 (274)
Q Consensus 193 ~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~----~~~~K~G~ 268 (274)
++.+++++.++. .+.+|+.|..++. +.+...-++.+++.+..+-++...++ .+.|-+.+
T Consensus 226 ~~d~~~~~~~~~-----~~~~G~~Yr~~~a------------i~~~~G~~~~~~~~igysYd~~~s~l~~~~~gshEi~l 288 (292)
T TIGR03519 226 QLDLGANALYND-----KLWAGAGYRGNDA------------VIGLVGFNLNKRLSIGYSYDFSTSSLSAYNGGSHEISV 288 (292)
T ss_pred EEEEeEEEEEee-----eEEEEEEecCCCc------------EEEEEEEEeCCCEEEEEEEeeEcccccCCCCCcEEEEE
Confidence 577777777752 2777777776322 34444444544455555555444333 34677777
Q ss_pred EEE
Q 023981 269 ALA 271 (274)
Q Consensus 269 ~l~ 271 (274)
+..
T Consensus 289 ~y~ 291 (292)
T TIGR03519 289 SYR 291 (292)
T ss_pred EEe
Confidence 654
No 50
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=48.54 E-value=89 Score=21.65 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=20.2
Q ss_pred ceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEc
Q 023981 193 LTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVN 230 (274)
Q Consensus 193 ~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvd 230 (274)
++.+++-+-+. .++..+++|++|.++++..+++.+.
T Consensus 26 ~~~~~~g~G~y--~g~~A~A~G~~~~~~~~~~~~~~~s 61 (78)
T PF03895_consen 26 KFSVGVGVGTY--RGESAVAVGASYRPNENVMVNAGVS 61 (78)
T ss_dssp -EEEEEEEEEE--TTEEEEEEEEEEE-TSSEEEEEEEE
T ss_pred cEEEEEEEEee--CCcccEEEEEEEEeCCCEEEEEEEE
Confidence 44555544443 4667777777777766666655554
No 51
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=47.83 E-value=92 Score=21.58 Aligned_cols=39 Identities=21% Similarity=-0.032 Sum_probs=27.5
Q ss_pred ceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEee
Q 023981 180 DSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHIL 219 (274)
Q Consensus 180 ~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~ 219 (274)
..+.+.+.+++++++.+-+-+.+ ....+....+|..|.+
T Consensus 40 ~A~A~G~~~~~~~~~~~~~~~s~-~~~~~~~~~~G~~~~w 78 (78)
T PF03895_consen 40 SAVAVGASYRPNENVMVNAGVSY-GSGGDVGAGAGVSYSW 78 (78)
T ss_dssp EEEEEEEEEE-TSSEEEEEEEEE-ETTS--EEEEEEEEEE
T ss_pred ccEEEEEEEEeCCCEEEEEEEEe-cCCCCEEEEEEEEeEC
Confidence 36667788888999888888887 3567888888888764
No 52
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=46.50 E-value=1.3e+02 Score=22.93 Aligned_cols=23 Identities=4% Similarity=-0.266 Sum_probs=17.1
Q ss_pred ceEEEEEEEeecCCeEEEEEEEE
Q 023981 233 GIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
..+++.++.++++++.+.+....
T Consensus 131 ~~~g~G~~y~~~~~~~l~~~y~~ 153 (176)
T PF13505_consen 131 FGLGAGVEYNISDNFSLNAEYRY 153 (176)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEEEE
Confidence 45777888889888877666555
No 53
>PRK12580 outer membrane protease; Reviewed
Probab=45.18 E-value=2.3e+02 Score=25.47 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=92.0
Q ss_pred EEEEEcCCCceEEEEEEccCCCCcEEEEEEE--ccCCCCceEEEE--------EeecceeeeEEEeCCCCCeEEEEEE-E
Q 023981 67 TDLKVDTASNLFTTITVDEPAPGLKTILSFK--VPDQRSGKVELQ--------YLHDYAGISTSVGLTANPIVNFSAV-I 135 (274)
Q Consensus 67 ~~~~~d~~g~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~v~l~~~p~~~~s~v-~ 135 (274)
+.-++++.-.+++++..+ +.|.|++..+.. +.........-+ +.++..+-+..++.-..-+++..+- +
T Consensus 63 LdWk~~N~aiikg~i~wd-~~~~ltl~a~gwttl~~g~g~M~DyDW~~~~~~~WTd~S~hp~T~LnyanefDln~k~W~l 141 (312)
T PRK12580 63 LDWKIKNVAILKGDISWD-PYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLL 141 (312)
T ss_pred eeccccCceEEeeecccc-cccceEEcceEEEEEccCCcccccccccCCCCCCCcccccCCCCcccchhhcceecceeee
Confidence 344455555578888887 889888877664 321111111111 3333344344443222223333233 2
Q ss_pred ecCccEEeEEEEEECCCCccceeeeEEeE--EcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEE
Q 023981 136 GTNVLSLGTDLSFDSKSGNFTKCNAGLSF--NNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITV 213 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~y--~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~v 213 (274)
..++..+|.-+.||...-+.+.+ |+.| ..+..+.+ . +++ ....+|=||..= .=+|..-.|.... +++
T Consensus 142 ~~~~y~lgv~aGyQ~t~~sw~a~--GGsy~Y~~~~~~g~--f-Pd~-~~gIgYkQrf~m-pYiGL~g~Yr~~~----fef 210 (312)
T PRK12580 142 QDENYKAGITAGYQETRFSWTAT--GGSYSYNNGAYTGN--F-PKG-VRVIGYNQRFSM-PYIGLAGQYRIND----FEL 210 (312)
T ss_pred cCCCeeEeeeecceeeeeeEEec--ccceEecCCCceee--c-CCC-ccceeeeEeccc-ceeeeeeEEEEee----EEE
Confidence 58888999999998664333222 3334 44443222 2 333 667788888742 2233322333221 122
Q ss_pred EEEEee-------------CCCCeEEEEEcCCceE--EEEEEEeecCCeEEEEEEEEec
Q 023981 214 GTQHIL-------------DPLTTLKARVNNAGIA--SALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 214 g~~y~~-------------d~~~~~k~kvds~g~v--~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
++..+. .++.++|-++++.--. ++-.-..+.|+.++-+.+..+.
T Consensus 211 ~~~lK~S~wv~a~D~DeHy~RnltF~e~~~ns~yys~~~~agYyvtpnak~f~e~~~~k 269 (312)
T PRK12580 211 NALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK 269 (312)
T ss_pred eeEEEecceEeccccchhhhccceehhhccCCccEEEEEecceEecCCeeEEEEEEEEe
Confidence 222111 1467888888766443 3334457788888877776654
No 54
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=43.28 E-value=2.7e+02 Score=25.68 Aligned_cols=77 Identities=9% Similarity=-0.087 Sum_probs=41.9
Q ss_pred ceEEEEEEEEeCCc----------eeEEEEEEEEeccCccEEEEEEEEeeCCCCeE------EEEEcCCceEEEEEEEee
Q 023981 180 DSLAASYYHFVNPL----------TAVGAEVIHSFSTTDNTITVGTQHILDPLTTL------KARVNNAGIASALIQHEW 243 (274)
Q Consensus 180 ~~~~~sy~~kv~~~----------~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~------k~kvds~g~v~~~~~~~l 243 (274)
..+.++..+++.+- ..+++...|.. .....+.+++.|.-+ +-.- .++=|....+++.+...+
T Consensus 267 t~l~l~~sr~~~~~~~~~~~y~~~~~~~l~~~~~~-~~~v~~~~~~~y~~~-dY~g~~~~~~~~R~D~~~~~~~~~~Y~~ 344 (381)
T TIGR03014 267 TSLNAAISRELANYQTVTSSYYRNRGTSIGPTWQA-TSKIAVRGRLDYEER-DFEGDPLVGPPARSDRTRSGSLSLDWSP 344 (381)
T ss_pred EEEEEEEEeccCCccccccceEEEEEEEEeeEeec-cceEEEEEEEEEEEe-eccCccccCCCccccceEEEEEEEEEEE
Confidence 34555555555331 13333334443 344566666655541 1111 236666677777777778
Q ss_pred cCCeEEEEEEEEecc
Q 023981 244 RPKSLFTISGEVDTK 258 (274)
Q Consensus 244 ~~~~~l~ls~~~d~~ 258 (274)
.+.+.+.+..+...+
T Consensus 345 ~~~~~~~l~~~~~~r 359 (381)
T TIGR03014 345 VRAVRISAAFQREKR 359 (381)
T ss_pred cceEEEEEEEEEEec
Confidence 888777766666554
No 55
>PRK10177 putative invasin; Provisional
Probab=43.00 E-value=2.4e+02 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=24.8
Q ss_pred ecCccEEeEEEEEECC-CCccceeeeEEeEEcCCeEEE
Q 023981 136 GTNVLSLGTDLSFDSK-SGNFTKCNAGLSFNNADLIAS 172 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~-~~~~~~~~~~~~y~~~~~~~~ 172 (274)
..++|.+|+.+.||.. .+...+..+|+.|-.+-+.++
T Consensus 168 ~~~~wmlG~N~F~D~dls~~h~R~glGaEaw~dylkls 205 (465)
T PRK10177 168 AAGNWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLS 205 (465)
T ss_pred ecCCeEEEeEEEEccCCCCCcceeeccceeeehheeee
Confidence 3789999999999864 233456777777755544333
No 56
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=42.49 E-value=3.6e+02 Score=26.94 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=36.5
Q ss_pred cCccEEeEEEEEECCCCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEE--eCCceeEEEEEEEEeccCcc
Q 023981 137 TNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHF--VNPLTAVGAEVIHSFSTTDN 209 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~k--v~~~~~~g~e~~~~~~~~~~ 209 (274)
.+.+.+-+-+.+|.-..... -...+..++| ...+.++...+.+.+-+. +.+++.+|+...|.....++
T Consensus 484 ~~~l~~~af~~~q~~~s~Q~---gs~~~~~~~W--~~~~~D~~~~~G~G~~~~~l~~~kL~lg~dYsys~~~s~~ 553 (637)
T PF11854_consen 484 SDDLSLYAFYNQQWIDSDQA---GSQNFSTPDW--TSDTEDKVTTVGAGFSYQGLMDDKLSLGLDYSYSDSDSDT 553 (637)
T ss_pred CCCeEEEEEEEeEeehhhhc---cccCccCCCc--cccccceeEEEEeceEeecccCccEEEeeeEEEecCccce
Confidence 55555555555543221110 0112334455 334444445666665444 78889999999998654333
No 57
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=40.16 E-value=3.9e+02 Score=26.65 Aligned_cols=90 Identities=9% Similarity=0.090 Sum_probs=47.8
Q ss_pred EEEEEEEEeCCceeEEEEEEEEeccC------------------ccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEE-Ee
Q 023981 182 LAASYYHFVNPLTAVGAEVIHSFSTT------------------DNTITVGTQHILDPLTTLKARVNNAGIASALIQ-HE 242 (274)
Q Consensus 182 ~~~sy~~kv~~~~~~g~e~~~~~~~~------------------~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~-~~ 242 (274)
+.++|-+.+.+++.+++.+.|....- ...+.++++|+++++..+++.+-.+-...-=|+ ..
T Consensus 538 lgl~~~~~~~~~LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~d~Dy~~~~ 617 (649)
T TIGR03509 538 AGLTYEGLLDLKLSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYSDNDYAYNN 617 (649)
T ss_pred EEeEeccccCCcEEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEeecchhhcC
Confidence 33444444567777777777764322 244778888888777776655522211111111 12
Q ss_pred ecC--CeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 243 WRP--KSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 243 l~~--~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
+.+ ...+..=+.++|. =+.|.+|+.+..+
T Consensus 618 ~~~~~~~~~~~~g~~~~~--Y~ah~~~~s~~y~ 648 (649)
T TIGR03509 618 TAYDTIATVTTLGDQNPN--YNAHYLGVSYSYL 648 (649)
T ss_pred CCcccccccccccccCCC--ceeeEEEEEEEEe
Confidence 222 1222222455552 2579999988764
No 58
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=39.61 E-value=2.4e+02 Score=23.96 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=10.0
Q ss_pred EEEEEeCCceeEEEEEEE
Q 023981 185 SYYHFVNPLTAVGAEVIH 202 (274)
Q Consensus 185 sy~~kv~~~~~~g~e~~~ 202 (274)
-..|+...-+-+.+|+.|
T Consensus 28 ~~sh~f~nG~g~~~E~k~ 45 (218)
T PF06178_consen 28 KVSHRFDNGFGFSVEAKW 45 (218)
T ss_dssp EEEEE-TTSEEEEEEEEE
T ss_pred EEEEEccCCcEEEEEEEe
Confidence 344666655666666666
No 59
>PRK09980 ompL outer membrane porin L; Provisional
Probab=35.91 E-value=2.3e+02 Score=24.32 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCceEEEEE-EEEeCCceeEEEEEEEEeccCccEEE--EEEEEeeCCCCeEEEE
Q 023981 178 KGDSLAASY-YHFVNPLTAVGAEVIHSFSTTDNTIT--VGTQHILDPLTTLKAR 228 (274)
Q Consensus 178 ~~~~~~~sy-~~kv~~~~~~g~e~~~~~~~~~~~~~--vg~~y~~d~~~~~k~k 228 (274)
++.++.++| +.|+++++.+---+.+...+..+... |-+.|.++++..+.++
T Consensus 70 ~~~E~~~sY~~~k~~d~~tl~PG~~~~s~s~~~~Y~PyLr~~y~f~~~~~~~~R 123 (230)
T PRK09980 70 GYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVR 123 (230)
T ss_pred cceEEEEEEEeEecCCCEEEecceEEEecCCCceEeeEEEEEEEECCCeEEEEE
No 60
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=35.86 E-value=1e+02 Score=27.19 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=24.8
Q ss_pred ceEEEEEEEeecCCeEEEEEEEEeccccc-CCceeEEEEEE
Q 023981 233 GIASALIQHEWRPKSLFTISGEVDTKAIE-KSAKFGLALAL 272 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~ 272 (274)
+.+++.|.+ +++.+-+.+-+.+|+ ++. .-.++|+|+++
T Consensus 95 ~N~GlG~R~-~~~~~~~G~N~FyD~-~~~~~~~R~~~G~E~ 133 (280)
T PF11924_consen 95 GNLGLGYRH-LNDNWMLGYNAFYDY-DFSRNHQRLGLGAEY 133 (280)
T ss_dssp EEEEEEEEE-EETTEEEEEEEEEEE-ETTTTEEEEEEEEEE
T ss_pred EEEeEEEEe-cCCCeEEEeEEEEec-CCCCCcceeeeeeEe
Confidence 456666666 566677777777777 353 34577777765
No 61
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=33.78 E-value=3.1e+02 Score=23.63 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.3
Q ss_pred cCccEEeEEEEEE
Q 023981 137 TNVLSLGTDLSFD 149 (274)
Q Consensus 137 ~~~~~lG~e~~~~ 149 (274)
..+|.+++....+
T Consensus 152 ~~g~~~~~~y~~~ 164 (311)
T PF13609_consen 152 FGGFSFGASYGPG 164 (311)
T ss_dssp ETTEEEEEEEEEE
T ss_pred cCceEEEEEEecc
Confidence 3455555554433
No 62
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.
Probab=27.55 E-value=4.9e+02 Score=23.97 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=41.8
Q ss_pred ceeEEEEEEEEecc-----CccEEEEEEEEeeCCCCeEE-------EEEc-CCceEEEEEEEeecCCeEEEEEEEEec
Q 023981 193 LTAVGAEVIHSFST-----TDNTITVGTQHILDPLTTLK-------ARVN-NAGIASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 193 ~~~~g~e~~~~~~~-----~~~~~~vg~~y~~d~~~~~k-------~kvd-s~g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
...+|+++.+.... -.+.+.+++++.+.+...++ ..++ +.+.+.+..+.++.+++.+.+..+...
T Consensus 334 ~~~lG~r~~~~~~~~~~~~~~p~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 411 (429)
T TIGR01414 334 QGRLGLRVGYQFDLGTGRAVKPYLKANVLHEFKGGTGVRVNGVTIRTDFSGTRGEYGVGVNAKIKSNLSLYADVDYQK 411 (429)
T ss_pred EEEEEEEEEeEeccCCCcEEeEEEEEEEEEecCCCCeEEECCEEeeccCCCcEEEEeeEEEEEECCCEEEEEEEEEec
Confidence 36778888776432 34667888888884433332 1222 235688888889998877766666554
No 63
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); InterPro: IPR018981 Porins are channel proteins in the outer membrane of Gram-negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer []. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides []. ; PDB: 2IWV_C 2F1C_X 2JQY_A 2IWW_B 2WVP_A 2X9K_A.
Probab=26.28 E-value=2.4e+02 Score=24.90 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=39.6
Q ss_pred ccEEEEEEEEeeCC------CCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccc-cCC----ceeEEEEEE
Q 023981 208 DNTITVGTQHILDP------LTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAI-EKS----AKFGLALAL 272 (274)
Q Consensus 208 ~~~~~vg~~y~~d~------~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~-~~~----~K~G~~l~~ 272 (274)
.++++==.|+-||. +--..-...+.-++++.|++.+.|+++++|--.....+- .++ |.-|+|++.
T Consensus 224 ~~tiTPY~R~~LD~w~n~dw~~~~~re~~~~~RlGll~~~~~~~glsmtLEYAYE~q~hd~g~~~kfHy~GvGv~Y 299 (301)
T PF09381_consen 224 NTTITPYTRIGLDRWSNWDWQDDLEREGHDFTRLGLLYEYDFPNGLSMTLEYAYEWQDHDEGDSDKFHYTGVGVNY 299 (301)
T ss_dssp TEEEEEEEEEEEEEEESTTTTTSSS-EEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE
T ss_pred CceeccceEeeeecccccccccchhhcCCccceeEEEEecccCCCcEEEEeeeeehhhccCCcccceeeeccceee
Confidence 45555556666633 111222333346799999999999998888665554322 222 666888864
No 64
>PF03687 UPF0164: Uncharacterised protein family (UPF0164); InterPro: IPR005362 This family of uncharacterised proteins are only found in Treponema pallidum. They contain a putative signal peptide so may be secreted proteins.
Probab=25.59 E-value=4.4e+02 Score=23.87 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.6
Q ss_pred cCccEEeEEE
Q 023981 137 TNVLSLGTDL 146 (274)
Q Consensus 137 ~~~~~lG~e~ 146 (274)
.+++++|+.+
T Consensus 158 F~GlSvG~n~ 167 (331)
T PF03687_consen 158 FKGLSVGANL 167 (331)
T ss_pred EeeeEeeeee
Confidence 3444555443
No 65
>PRK12580 outer membrane protease; Reviewed
Probab=24.15 E-value=2.9e+02 Score=24.90 Aligned_cols=74 Identities=7% Similarity=-0.033 Sum_probs=47.1
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeec-CCeEEEEEEEEec
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWR-PKSLFTISGEVDT 257 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~-~~~~l~ls~~~d~ 257 (274)
.+.+.+|.-..++..+|+...|+.. +-.=.+-|+.|..+.+. -.+. =.+|..+..|+||+. |-+.|+-+=.++-
T Consensus 133 Dln~k~W~l~~~~y~lgv~aGyQ~t-~~sw~a~GGsy~Y~~~~-~~g~-fPd~~~gIgYkQrf~mpYiGL~g~Yr~~~ 207 (312)
T PRK12580 133 DLNVKGWLLQDENYKAGITAGYQET-RFSWTATGGSYSYNNGA-YTGN-FPKGVRVIGYNQRFSMPYIGLAGQYRIND 207 (312)
T ss_pred ceecceeeecCCCeeEeeeecceee-eeeEEecccceEecCCC-ceee-cCCCccceeeeEecccceeeeeeEEEEee
Confidence 5566667666888888888888743 33344567777764443 1112 237889999999995 4566655554443
No 66
>PRK10993 outer membrane protease; Reviewed
Probab=24.13 E-value=5.4e+02 Score=23.27 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=48.7
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEE--cCCceEEEEEEEeec-CCeEEEEEEEEe
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARV--NNAGIASALIQHEWR-PKSLFTISGEVD 256 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kv--ds~g~v~~~~~~~l~-~~~~l~ls~~~d 256 (274)
.+.+.++--..++..+|+.+.|+. .+..--+.|+.|..+.... |..+ =.++.++..|+|++. |.+.|+.+-.++
T Consensus 133 dln~~~w~l~~~~yklG~~aGyqy-~~~sw~A~GG~y~Y~~~~~-r~~~g~fPd~~~~I~Y~Q~f~~pyiGL~g~y~~~ 209 (314)
T PRK10993 133 DLNLKGWLLQNPNYRLGVMAGYQE-TRFSWTAYGGSYIYSNGGF-RDDIGTFPDGERGIGYKQRFKMPYIGLTGSYRYD 209 (314)
T ss_pred ceecceeeecCCCceeeeEeeeEE-EeceeEccCceEEcCCCCC-CCCccccCCCccceeeEEEecceeeeEEEEEEec
Confidence 566667666688888888888875 3455557777777633311 2221 157899999999995 456665555554
No 67
>PF04575 DUF560: Protein of unknown function (DUF560); InterPro: IPR007655 This is a family of hypothetical bacterial proteins.
Probab=23.20 E-value=4.9e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=12.2
Q ss_pred EEEEcCCceEEEEEEEeecC
Q 023981 226 KARVNNAGIASALIQHEWRP 245 (274)
Q Consensus 226 k~kvds~g~v~~~~~~~l~~ 245 (274)
+-+-|..-.+.+.+.++.-.
T Consensus 229 ~~R~D~~~~~~~~l~~~~~~ 248 (285)
T PF04575_consen 229 KKRRDKEYSLSLSLWHRDWH 248 (285)
T ss_pred CCccCCEEEEEEEEEecccc
Confidence 55566666677777655444
No 68
>COG4206 BtuB Outer membrane cobalamin receptor protein [Coenzyme metabolism]
Probab=21.63 E-value=3.5e+02 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=29.0
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcCC
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNA 232 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~ 232 (274)
.....|+..-...+.+|.-..+ -+.++|.+++.++++++|.+-
T Consensus 540 Ryd~~~~t~p~ntv~lggysl~---------Dl~~~Y~it~~~~v~grIeNl 582 (608)
T COG4206 540 RYDGDYSTYPANTVKLGGYSLL---------DLRVSYPITDHLTVSGRIENL 582 (608)
T ss_pred eccCccccCcccceEeccEEEE---------EEEEEEEecCceEEeEehhhh
Confidence 4444555544445666655444 446789999999999999874
No 69
>PF03687 UPF0164: Uncharacterised protein family (UPF0164); InterPro: IPR005362 This family of uncharacterised proteins are only found in Treponema pallidum. They contain a putative signal peptide so may be secreted proteins.
Probab=21.44 E-value=6.2e+02 Score=22.96 Aligned_cols=65 Identities=5% Similarity=-0.140 Sum_probs=35.6
Q ss_pred EEEeccCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 201 IHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 201 ~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
.|.+ -+--.++++.++.++-+.. +.......++.++-.+.+.++|..+..+.+ +++++.+|-+|+
T Consensus 260 AY~P-ir~~L~s~~~~~p~Nl~~~---~~~~~~~~a~G~~~~~t~fl~~~sg~~~kg----~~~R~s~G~e~~ 324 (331)
T PF03687_consen 260 AYRP-IRPFLFSFDFTVPVNLQNL---SSSERPYYAAGFMLFPTDFLSFLSGFLLKG----GNPRFSIGAEFR 324 (331)
T ss_pred eccc-ceeEEEEeceeEEEecccc---cccCCcceeeeeEeehhhhhhhhcceEecC----CCeeEEeccEEE
Confidence 4543 2444555565555532222 233345566666666666677766666554 357777776654
No 70
>COG2829 PldA Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane]
Probab=20.96 E-value=3.9e+02 Score=23.81 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCceEEEEEEEeecCCeEEEEEE-------EEecccccCCceeEEEEEEcC
Q 023981 231 NAGIASALIQHEWRPKSLFTISG-------EVDTKAIEKSAKFGLALALKP 274 (274)
Q Consensus 231 s~g~v~~~~~~~l~~~~~l~ls~-------~~d~~~~~~~~K~G~~l~~~~ 274 (274)
..|-+-+.|...+.+++.+-.-. -||.. ....++|+|+.|.+
T Consensus 267 ~~Ga~e~~ysYpI~~~v~~Y~Q~fnGYGEsLiDYn--~~~~RiGvGi~lN~ 315 (317)
T COG2829 267 GYGAIELGYSYPITKHVRLYTQVFNGYGESLIDYN--FNQNRIGVGIMLND 315 (317)
T ss_pred CCceeEEeecccccCceEEEEEEeccCCcchhhhh--hcccceeEEEEecc
Confidence 34777777777777766664432 34552 24679999999864
Done!