Query 023981
Match_columns 274
No_of_seqs 134 out of 632
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 2.8E-66 9.7E-71 456.8 38.2 272 2-274 13-295 (295)
2 3emn_X Voltage-dependent anion 98.5 0.00042 1.4E-08 60.5 28.1 183 28-216 96-292 (295)
3 3bs0_A TODX; beta barrel, oute 91.8 7.1 0.00024 35.2 18.1 76 179-254 278-397 (439)
4 3pgu_A Long-chain fatty acid t 89.1 5.5 0.00019 36.1 12.6 76 179-258 272-350 (427)
5 3bry_A TBUX; beta barrel, oute 85.3 20 0.0007 32.1 17.8 77 179-257 278-360 (441)
6 3nsg_A Outer membrane protein 81.8 25 0.00086 30.5 19.5 116 156-272 171-339 (341)
7 3prn_A Porin; integral membran 77.4 33 0.0011 29.3 16.5 113 156-272 162-289 (289)
8 1i78_A Protease VII; integral 75.3 39 0.0013 29.0 17.7 113 136-257 122-255 (297)
9 2por_A Porin; HET: C8E; 1.80A 73.2 42 0.0014 28.5 17.3 63 209-272 230-299 (301)
10 3dwo_X Probable outer membrane 72.9 54 0.0019 29.6 24.2 50 179-228 285-356 (451)
11 2x55_A Coagulase/fibrinolysin; 64.8 66 0.0023 27.4 18.5 114 135-257 121-249 (293)
12 1uyn_X NALP; autotransporter, 56.0 58 0.002 27.6 8.9 65 193-257 209-291 (308)
13 2wjr_A Probable N-acetylneuram 53.1 33 0.0011 27.9 6.5 24 178-201 52-75 (214)
14 2por_A Porin; HET: C8E; 1.80A 51.9 63 0.0022 27.3 8.5 39 181-219 262-301 (301)
15 2lme_A Adhesin YADA; trimeric 48.8 49 0.0017 23.5 6.1 25 206-230 64-88 (105)
16 2fgq_X OMP32, outer membrane p 47.5 1.3E+02 0.0045 25.6 15.2 43 185-227 244-290 (332)
17 3kvn_X Esterase ESTA; beta bar 46.2 1.9E+02 0.0066 27.1 18.7 64 193-256 533-614 (632)
18 3pgu_A Long-chain fatty acid t 45.0 1.7E+02 0.0057 26.1 15.1 59 181-249 326-397 (427)
19 3qra_A AIL, attachment invasio 42.4 1.1E+02 0.0037 23.1 13.5 23 233-255 116-138 (157)
20 2lme_A Adhesin YADA; trimeric 37.2 58 0.002 23.1 5.0 38 233-273 67-104 (105)
21 1pho_A Phosphoporin; outer mem 36.7 1.9E+02 0.0065 24.3 19.8 116 156-272 166-328 (330)
22 3aeh_A Hemoglobin-binding prot 35.0 1.2E+02 0.0041 25.4 7.6 15 211-225 266-280 (308)
23 4e1t_A Invasin; outer membrane 32.8 2.1E+02 0.0072 23.7 12.6 38 137-174 63-101 (245)
24 3vy8_X Outer membrane protein; 31.8 2.5E+02 0.0087 24.3 18.3 20 79-98 146-166 (355)
25 3qq2_A BRKA autotransporter; b 28.3 2.5E+02 0.0084 23.0 9.2 61 194-254 190-263 (284)
26 2fgq_X OMP32, outer membrane p 26.8 2.9E+02 0.0099 23.4 16.8 101 156-257 170-296 (332)
27 3nsg_A Outer membrane protein 26.1 3.1E+02 0.011 23.4 20.5 18 210-227 293-310 (341)
28 3vy8_X Outer membrane protein; 25.9 3.2E+02 0.011 23.6 13.9 96 156-253 184-330 (355)
29 1qd6_C Protein (outer membrane 25.6 2.8E+02 0.0096 22.8 8.4 41 232-274 191-238 (240)
30 3qq2_A BRKA autotransporter; b 25.4 1.9E+02 0.0064 23.7 7.1 49 181-229 211-262 (284)
31 2zfg_A Outer membrane protein 25.4 3.1E+02 0.011 23.2 19.6 65 208-272 254-338 (340)
32 3nb3_A Outer membrane protein 24.4 3.1E+02 0.011 23.0 11.8 40 181-220 143-192 (346)
33 1pho_A Phosphoporin; outer mem 23.7 3.2E+02 0.011 22.8 17.2 72 156-227 208-301 (330)
34 3slt_A Serine protease ESPP; b 23.2 2.4E+02 0.0083 23.8 7.4 20 210-229 272-291 (313)
35 3a2s_X Outer membrane protein 20.7 3.9E+02 0.013 22.7 14.1 20 79-98 146-166 (355)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=2.8e-66 Score=456.77 Aligned_cols=272 Identities=24% Similarity=0.380 Sum_probs=259.9
Q ss_pred CCCCCcccccccccccccccCCCCc-ceEEEEEeCCCCcEEEEEEEecC--ceeeEEEEEEEeecC--eEEEEEEcCCCc
Q 023981 2 GKGPGLYTDIGKKARDLLYKDYQSD-HKFTITTYSPTGVAITSSGTKKG--ELFLADVNTQLKNKN--ITTDLKVDTASN 76 (274)
Q Consensus 2 ~~~P~~f~dl~K~akDll~~~y~~~-~~l~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~~--~~~~~~~d~~g~ 76 (274)
|.+||.|.||+|.|||||++||+++ ++|+|++++++|++|++++.... +++.|++|++|++++ ++++++|+++|+
T Consensus 13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~ 92 (295)
T 3emn_X 13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT 92 (295)
T ss_dssp CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence 5789999999999999999999999 99999999999999999998766 799999999999984 899999999999
Q ss_pred eEEEEEEcc-CCCCcEEEEEEEc-cC--CCCceEEEEEeecceeeeEEEeCC-CCCeEEEEEEEecCccEEeEEEEEECC
Q 023981 77 LFTTITVDE-PAPGLKTILSFKV-PD--QRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSK 151 (274)
Q Consensus 77 l~~~~~~~~-~~~glk~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~l~-~~p~~~~s~v~~~~~~~lG~e~~~~~~ 151 (274)
|.+++++++ ++||||+.+.+.+ |+ .++++++++|++++++++++++++ ++|.++.++|+++++|++|+|+.||.+
T Consensus 93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~ 172 (295)
T 3emn_X 93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS 172 (295)
T ss_dssp EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence 999999999 9999999999996 65 468999999999999999999994 799999999999999999999999999
Q ss_pred CCccceeeeEEeEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEEcC
Q 023981 152 SGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNN 231 (274)
Q Consensus 152 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kvds 231 (274)
.+++++|+++++|+.+||++++++++ +..+.+|||||+++++++|+|+.|..+.+++.++||+||++|+++++|||||+
T Consensus 173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~ 251 (295)
T 3emn_X 173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNN 251 (295)
T ss_dssp TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEET
T ss_pred CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECC
Confidence 98999999999999999999999984 78999999999999999999999999889999999999999999999999999
Q ss_pred CceEEEEEEEeecCCeEEEEEEEEeccccc-CCceeEEEEEEcC
Q 023981 232 AGIASALIQHEWRPKSLFTISGEVDTKAIE-KSAKFGLALALKP 274 (274)
Q Consensus 232 ~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~~ 274 (274)
+|.|+++|||+|+|+++|++|++||+++++ +.||||++|+||+
T Consensus 252 ~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~ 295 (295)
T 3emn_X 252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 295 (295)
T ss_dssp TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence 999999999999999999999999999884 7999999999986
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.48 E-value=0.00042 Score=60.53 Aligned_cols=183 Identities=15% Similarity=0.171 Sum_probs=120.7
Q ss_pred eEEEEEeCCCCcEEEEEEEe-cC-ceeeEEEEEEEeecCeEEEEEEcC--CC-ceEEEEEEccCCCCcEEEEEEEc--cC
Q 023981 28 KFTITTYSPTGVAITSSGTK-KG-ELFLADVNTQLKNKNITTDLKVDT--AS-NLFTTITVDEPAPGLKTILSFKV--PD 100 (274)
Q Consensus 28 ~l~~~~~~~~g~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~d~--~g-~l~~~~~~~~~~~glk~~~~~~~--~~ 100 (274)
.+++......|+.......- +. +.-.+.+++.|+.+.+.+...+|- .+ .+.....+. .+++-+-.+..+ +.
T Consensus 96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~ 173 (295)
T 3emn_X 96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK 173 (295)
T ss_dssp EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence 45555544567666555542 33 355888999999887666444432 22 334433333 366665555543 22
Q ss_pred CC--CceEEEEEeecceeeeEEEeCCCCCeEEEEEEE-ecCccEEeEEEEEECCCCccceeeeEEeEEc-CCeEEEEEEc
Q 023981 101 QR--SGKVELQYLHDYAGISTSVGLTANPIVNFSAVI-GTNVLSLGTDLSFDSKSGNFTKCNAGLSFNN-ADLIASLNLN 176 (274)
Q Consensus 101 ~~--~~~~~~~~~~~~~~~~~~v~l~~~p~~~~s~v~-~~~~~~lG~e~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~ 176 (274)
.+ ...+.+.|..+.+.+..+++ ....+..|... +.+++.+|+|+.|....+ -....+|.+|.- ++.++.++++
T Consensus 174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~-~~~~tvG~ky~ld~~~~vKakvn 250 (295)
T 3emn_X 174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGNS-NTRFGIAAKYQVDPDACFSAKVN 250 (295)
T ss_dssp TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTEE-EEEEEEEEEECCSSSEEEEEEEE
T ss_pred CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccCC-CcEEEEEEEEEcCCCCEEEEEEC
Confidence 11 23467888888887777765 33456666665 689999999999997543 457888888986 6899999999
Q ss_pred cCCceEEEEEEEEeCCceeEEEEEEEEecc---CccEEEEEEE
Q 023981 177 NKGDSLAASYYHFVNPLTAVGAEVIHSFST---TDNTITVGTQ 216 (274)
Q Consensus 177 ~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~---~~~~~~vg~~ 216 (274)
+++ .+.+.|-|++.|.+.+..-.+.+... +...+.+|..
T Consensus 251 ~~g-~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~ 292 (295)
T 3emn_X 251 NSS-LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE 292 (295)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred CCC-EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence 765 99999999999987666666665432 4455555543
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=91.81 E-value=7.1 Score=35.24 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=50.8
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEeccC--------------------------ccEEEEEEEEeeCCCCeEEEEEc--
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT--------------------------DNTITVGTQHILDPLTTLKARVN-- 230 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~--------------------------~~~~~vg~~y~~d~~~~~k~kvd-- 230 (274)
+..+.++..|++++++.+.+++.|..=+. ...+++|++|+++++.++|+=+.
T Consensus 278 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~yd 357 (439)
T 3bs0_A 278 PASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYA 357 (439)
T ss_dssp CCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEEC
T ss_pred CcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEcc
Confidence 56899999999999999999998864221 22467788888777777776542
Q ss_pred ----------------CCceEEEEEEEeecCCeEEEEEEE
Q 023981 231 ----------------NAGIASALIQHEWRPKSLFTISGE 254 (274)
Q Consensus 231 ----------------s~g~v~~~~~~~l~~~~~l~ls~~ 254 (274)
+...+++....++.+++.+.++.+
T Consensus 358 ~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~ 397 (439)
T 3bs0_A 358 QQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS 397 (439)
T ss_dssp C------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred cCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence 112345555556655555555544
No 4
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=89.14 E-value=5.5 Score=36.07 Aligned_cols=76 Identities=11% Similarity=-0.028 Sum_probs=46.9
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEeccCccEEEEEEEEeeCCCC---eEEEEEcCCceEEEEEEEeecCCeEEEEEEEE
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLT---TLKARVNNAGIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~vg~~y~~d~~~---~~k~kvds~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
+..+.++..|++++++.+.+++.|..=+.-..+.+- .+... ...-.-.+.+.+.+..+.++++.+++..+...
T Consensus 272 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~----~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~y 347 (427)
T 3pgu_A 272 PEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKAT----STSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAF 347 (427)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEE----EETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred CcEEEEEEEEecCCCEEEEEEEEEEEeccccceEEE----cCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEE
Confidence 468899999999999999999999753322112111 10110 01112234456777777777777777777777
Q ss_pred ecc
Q 023981 256 DTK 258 (274)
Q Consensus 256 d~~ 258 (274)
|..
T Consensus 348 d~s 350 (427)
T 3pgu_A 348 DDS 350 (427)
T ss_dssp EEC
T ss_pred ccC
Confidence 654
No 5
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=85.27 E-value=20 Score=32.08 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=45.7
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEeccC-ccEEEEEEEEeeCC-----CCeEEEEEcCCceEEEEEEEeecCCeEEEEE
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFSTT-DNTITVGTQHILDP-----LTTLKARVNNAGIASALIQHEWRPKSLFTIS 252 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~~-~~~~~vg~~y~~d~-----~~~~k~kvds~g~v~~~~~~~l~~~~~l~ls 252 (274)
+..+.++..|++++++.+.+++.|..-+. -..+.+ ++.-+. .....-...+.+.+++..|.++++.++|..+
T Consensus 278 P~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG 355 (441)
T 3bry_A 278 PAQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNV--GFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG 355 (441)
T ss_dssp CCEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEE--EECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEeEEEEeCCCEEEEEEEEEEEccchhhheee--eccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence 56899999999999999999999875332 111111 111000 0112222344556666666666666666666
Q ss_pred EEEec
Q 023981 253 GEVDT 257 (274)
Q Consensus 253 ~~~d~ 257 (274)
...|.
T Consensus 356 ~~yd~ 360 (441)
T 3bry_A 356 FHYAQ 360 (441)
T ss_dssp EEEEE
T ss_pred eeccc
Confidence 66665
No 6
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=81.83 E-value=25 Score=30.51 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=72.1
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc---------------CCceEEEEEEEEeCCceeEEEEEEEEec---------------
Q 023981 156 TKCNAGLSFNNADLIASLNLNN---------------KGDSLAASYYHFVNPLTAVGAEVIHSFS--------------- 205 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~---------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~--------------- 205 (274)
..|.+++.|..+.+.+.+-... +...+.+.--..+. .+.+++...+...
T Consensus 171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g-~~~l~a~Y~~~~~~~~~~~~~~~~~~~~ 249 (341)
T 3nsg_A 171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDAN-NVYLAAVYAETRNMSIVENTVTDTVEMA 249 (341)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEET-TEEEEEEEEEESSCCCEECTTTCCEECC
T ss_pred ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeC-CEEEEEEEEEEEeccccCcccccccccc
Confidence 4578888888877776664321 00122222222333 3566665554321
Q ss_pred cCccEEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEeecCCeEEEEEEEEeccc--------ccC
Q 023981 206 TTDNTITVGTQHILDPLTTLKARV-----NN----------AGIASALIQHEWRPKSLFTISGEVDTKA--------IEK 262 (274)
Q Consensus 206 ~~~~~~~vg~~y~~d~~~~~k~kv-----ds----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~~~ 262 (274)
.+...+.++++|++.+..++++.. +. .-.+.+.++..|+++..+-+...+|..+ ...
T Consensus 250 ~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~ 329 (341)
T 3nsg_A 250 NKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGT 329 (341)
T ss_dssp SEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTTCS
T ss_pred eEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCccccccccCc
Confidence 123568999999997766665532 11 2257889999999999999888887643 123
Q ss_pred CceeEEEEEE
Q 023981 263 SAKFGLALAL 272 (274)
Q Consensus 263 ~~K~G~~l~~ 272 (274)
+-.+++||..
T Consensus 330 dd~~~vGlry 339 (341)
T 3nsg_A 330 DDQAAVGITY 339 (341)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 5689999875
No 7
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=77.38 E-value=33 Score=29.29 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=68.8
Q ss_pred ceeeeEEeEEcCCeEEEEEEc--c----CCceEEEEEEEEeCCceeEEEEEEEEec---cCccEEEEEEEEeeCCCCeEE
Q 023981 156 TKCNAGLSFNNADLIASLNLN--N----KGDSLAASYYHFVNPLTAVGAEVIHSFS---TTDNTITVGTQHILDPLTTLK 226 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~--~----~~~~~~~sy~~kv~~~~~~g~e~~~~~~---~~~~~~~vg~~y~~d~~~~~k 226 (274)
..|.+++.|+-.++.+++-.. . +.+.+.++.-..+.+.+.+++ .|.-. .....+.++..|.+ ..++|+
T Consensus 162 d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~--~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~ 238 (289)
T 3prn_A 162 EEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGL--NWYDNGLSTAGDQVTLYGNYAF-GATTVR 238 (289)
T ss_dssp CEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEE--EEEECTTSTTCSEEEEEEEEEE-TTEEEE
T ss_pred ceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEE--EEEccccccCCceEEEEEEeEe-cCeEEE
Confidence 346666666666655555332 0 113455555555553344444 33222 23457888999999 888899
Q ss_pred EEEcC------CceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 227 ARVNN------AGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 227 ~kvds------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
+.+.. ....++.+++.|.++.+|..+-.-+... .....+|+.++|
T Consensus 239 a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F 289 (289)
T 3prn_A 239 AYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF 289 (289)
T ss_dssp EEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred EEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence 88653 2357999999999999998887643310 114677776654
No 8
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=75.30 E-value=39 Score=28.98 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=63.5
Q ss_pred ecCccEEeEEEEEECCCCccceeeeEEe--EEcCC----eEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCcc
Q 023981 136 GTNVLSLGTDLSFDSKSGNFTKCNAGLS--FNNAD----LIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDN 209 (274)
Q Consensus 136 ~~~~~~lG~e~~~~~~~~~~~~~~~~~~--y~~~~----~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~ 209 (274)
..+++.+|+.+.|+....+. .+.++. |..+. .+.++ +. +....+|-|+.. ..-+|...+|... .-
T Consensus 122 ~~~~~~lg~~~Gy~y~~~~w--~A~gG~~~Y~~~~~~~~~~~~~---P~-~~~~I~Y~Q~~~-~pyiGL~g~y~~~--~~ 192 (297)
T 1i78_A 122 NEPNYRLGLMAGYQESRYSF--TARGGSYIYSSEEGFRDDIGSF---PN-GERAIGYKQRFK-MPYIGLTGSYRYE--DF 192 (297)
T ss_dssp ECSSEEEEEEEEEEEEEEEE--EEECCEEEBCCTTCSSCBCCBC---CT-TCSEEEEEEEEE-EEEEEEEEEEEET--TE
T ss_pred cCCceEEeEEcccEEEeeee--eecCceEEcCCCCccccccccc---CC-CccceeEEEEEE-eeeeeEEEEEeeC--cE
Confidence 58888899999887653322 222332 32221 11111 22 256778888875 3455555555543 23
Q ss_pred EEEEEEEEe-----------eC--CCCeEEEEEcCC--ceEEEEEEEeecCCeEEEEEEEEec
Q 023981 210 TITVGTQHI-----------LD--PLTTLKARVNNA--GIASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 210 ~~~vg~~y~-----------~d--~~~~~k~kvds~--g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
.+.+..+|. .. ++.+++-+..+- ..+++.+...|.|+++|-+.+....
T Consensus 193 ~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 255 (297)
T 1i78_A 193 ELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR 255 (297)
T ss_dssp EEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 333333332 22 455666666542 2366777778888888888887765
No 9
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=73.20 E-value=42 Score=28.46 Aligned_cols=63 Identities=2% Similarity=-0.113 Sum_probs=39.8
Q ss_pred cEEEEEE--EEeeCCCCeEEEEEc-----CCceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEE
Q 023981 209 NTITVGT--QHILDPLTTLKARVN-----NAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALAL 272 (274)
Q Consensus 209 ~~~~vg~--~y~~d~~~~~k~kvd-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 272 (274)
..+.+|+ +|.+.+..++++... +.-.+++.|++.|+|++++-.+-..+-.+ ..+-.+-+|+.+
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~ 299 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF 299 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence 4467777 777744443666543 23478999999999999997766554421 223445555544
No 10
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=72.88 E-value=54 Score=29.60 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=36.8
Q ss_pred CceEEEEEEEEeCCceeEEEEEEEEecc----------------------CccEEEEEEEEeeCCCCeEEEE
Q 023981 179 GDSLAASYYHFVNPLTAVGAEVIHSFST----------------------TDNTITVGTQHILDPLTTLKAR 228 (274)
Q Consensus 179 ~~~~~~sy~~kv~~~~~~g~e~~~~~~~----------------------~~~~~~vg~~y~~d~~~~~k~k 228 (274)
+..+.++..+++++++.+.+++.|..-+ ....+++|++|++++++++|+=
T Consensus 285 P~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG 356 (451)
T 3dwo_X 285 PAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAG 356 (451)
T ss_dssp CCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEE
T ss_pred CcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEE
Confidence 5688999999999999999999987422 2345666666666666666653
No 11
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=64.75 E-value=66 Score=27.42 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=70.6
Q ss_pred EecCccEEeEEEEEECCCCccceeeeEE--eEEcCCeEEEEEEccCCceEEEEEEEEeCCceeEEEEEEEEeccCccEEE
Q 023981 135 IGTNVLSLGTDLSFDSKSGNFTKCNAGL--SFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTIT 212 (274)
Q Consensus 135 ~~~~~~~lG~e~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~sy~~kv~~~~~~g~e~~~~~~~~~~~~~ 212 (274)
+..+++.+|+.+.|+....+. .+.++ .|..+.... .. +. .....+|-|+.. ..-+|...+|... .-.+.
T Consensus 121 l~~~~~~lg~~~Gy~y~~~~w--~A~gG~~~Y~~~~~~~--~~-p~-~~~~I~Y~Q~~~-~pyiGL~g~yr~~--~~~l~ 191 (293)
T 2x55_A 121 LQDENYKAGITAGYQETRFSW--TATGGSYSYNNGAYTG--NF-PK-GVRVIGYNQRFS-MPYIGLAGQYRIN--DFELN 191 (293)
T ss_dssp EECSSEEEEEEEEEEEEEEEE--EEESCEEEETTTTEEE--EC-CT-TCEEEEEEEEEE-EEEEEEEEEEEET--TEEEE
T ss_pred EcCCCeEEeEEeceEEEeccc--cccCCcEEcCCCCccc--cc-CC-CCcceeeEEEEE-eeeeeEEEEEEec--cEEEE
Confidence 368889999999998654333 33333 355444322 22 33 377889999885 3466666666653 34444
Q ss_pred EEEEEee-----------CCCCeEEEEEcCC--ceEEEEEEEeecCCeEEEEEEEEec
Q 023981 213 VGTQHIL-----------DPLTTLKARVNNA--GIASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 213 vg~~y~~-----------d~~~~~k~kvds~--g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
+..+|.. .++.+++-+..+- ..+++.+...|.|+++|-+.+....
T Consensus 192 ~~~~~s~~v~a~~~D~H~~R~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 249 (293)
T 2x55_A 192 ALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK 249 (293)
T ss_dssp EEEEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEecceeEEEecccHHhccCCccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 4444432 1345666666543 2366777788999999998888876
No 12
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=55.96 E-value=58 Score=27.61 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=39.2
Q ss_pred ceeEEEEEEEEec-cCccEEEEEEEEee-CCCCeEEEE---------------Ec-CCceEEEEEEEeecCCeEEEEEEE
Q 023981 193 LTAVGAEVIHSFS-TTDNTITVGTQHIL-DPLTTLKAR---------------VN-NAGIASALIQHEWRPKSLFTISGE 254 (274)
Q Consensus 193 ~~~~g~e~~~~~~-~~~~~~~vg~~y~~-d~~~~~k~k---------------vd-s~g~v~~~~~~~l~~~~~l~ls~~ 254 (274)
...+|.++.+.+. .-.....+++++.+ ++...+.+. ++ +...+++.++..+++++++.++-+
T Consensus 209 ~~~lG~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~~l~~~y~ 288 (308)
T 1uyn_X 209 VGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYS 288 (308)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEeeeEEEEEEecCceEEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCEEEEEEEE
Confidence 3577777777663 33456778888887 333222222 21 224688888889988877766554
Q ss_pred Eec
Q 023981 255 VDT 257 (274)
Q Consensus 255 ~d~ 257 (274)
-..
T Consensus 289 ~~~ 291 (308)
T 1uyn_X 289 YAG 291 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 13
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=53.12 E-value=33 Score=27.88 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=17.1
Q ss_pred CCceEEEEEEEEeCCceeEEEEEE
Q 023981 178 KGDSLAASYYHFVNPLTAVGAEVI 201 (274)
Q Consensus 178 ~~~~~~~sy~~kv~~~~~~g~e~~ 201 (274)
++.++.++|..|+++++.+..-+.
T Consensus 52 ng~E~~~~Y~~k~~d~~~l~PG~~ 75 (214)
T 2wjr_A 52 NDVQVEVNYAIKLDDQWTVRPGML 75 (214)
T ss_dssp CEEEEEEEECEESSSSEEEEEEEE
T ss_pred ccEEEEEEEEEEcCCCEEEecceE
Confidence 467888999889998755544444
No 14
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=51.94 E-value=63 Score=27.33 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=20.1
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEecc-CccEEEEEEEEee
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFST-TDNTITVGTQHIL 219 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~-~~~~~~vg~~y~~ 219 (274)
.+.+.|-|.+++++.+-+++...... .+..+.+|.||.|
T Consensus 262 ~~~lg~~Y~Ls~~~~lya~y~~~~~~~~~~~~~~Gvr~~F 301 (301)
T 2por_A 262 YYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFKF 301 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEEC
T ss_pred EEEEEEEEcCCCCeEEEEEEEeccCCCCceeEEEEeEEeC
Confidence 45555666666666655555544321 1245566665543
No 15
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=48.83 E-value=49 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=16.0
Q ss_pred cCccEEEEEEEEeeCCCCeEEEEEc
Q 023981 206 TTDNTITVGTQHILDPLTTLKARVN 230 (274)
Q Consensus 206 ~~~~~~~vg~~y~~d~~~~~k~kvd 230 (274)
..+..++||+.|.+++++.+|+.+.
T Consensus 64 ~g~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 64 RSSQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp TTEEEEEEEEEEEESSSBCCEEEEE
T ss_pred CCceEEEEEEEEEeCCCEEEEEEEE
Confidence 4566777777777766666665543
No 16
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=47.46 E-value=1.3e+02 Score=25.58 Aligned_cols=43 Identities=21% Similarity=0.094 Sum_probs=21.7
Q ss_pred EEEEEeCCceeEEEEEEEEec----cCccEEEEEEEEeeCCCCeEEE
Q 023981 185 SYYHFVNPLTAVGAEVIHSFS----TTDNTITVGTQHILDPLTTLKA 227 (274)
Q Consensus 185 sy~~kv~~~~~~g~e~~~~~~----~~~~~~~vg~~y~~d~~~~~k~ 227 (274)
+.-.++++.+.+.+...+... .....+.+|+.|.|.+.+.+=+
T Consensus 244 ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~ 290 (332)
T 2fgq_X 244 GASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYG 290 (332)
T ss_dssp EEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEE
T ss_pred EEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHhee
Confidence 333445555555554444311 1234667777777766555443
No 17
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=46.22 E-value=1.9e+02 Score=27.08 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=43.2
Q ss_pred ceeEEEEEEEEec-cCccEEEEEEEEee-CCCCeEEEEEcC----------------CceEEEEEEEeecCCeEEEEEEE
Q 023981 193 LTAVGAEVIHSFS-TTDNTITVGTQHIL-DPLTTLKARVNN----------------AGIASALIQHEWRPKSLFTISGE 254 (274)
Q Consensus 193 ~~~~g~e~~~~~~-~~~~~~~vg~~y~~-d~~~~~k~kvds----------------~g~v~~~~~~~l~~~~~l~ls~~ 254 (274)
...+|+++.+... .-...+.+++++.+ +....+++.+.. .+.+++..+-++.+++++.+..+
T Consensus 533 ~~~lG~r~~~~~~~~~~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~sl~~~y~ 612 (632)
T 3kvn_X 533 RLGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYN 612 (632)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEecceEEEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCEEEEEEEE
Confidence 3577777777765 34566778888887 444566665554 24478888989998877766554
Q ss_pred Ee
Q 023981 255 VD 256 (274)
Q Consensus 255 ~d 256 (274)
-.
T Consensus 613 ~~ 614 (632)
T 3kvn_X 613 WR 614 (632)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 18
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=45.03 E-value=1.7e+02 Score=26.08 Aligned_cols=59 Identities=7% Similarity=-0.051 Sum_probs=33.2
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEec-------------cCccEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeecCCe
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFS-------------TTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKS 247 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~-------------~~~~~~~vg~~y~~d~~~~~k~kvds~g~v~~~~~~~l~~~~ 247 (274)
.+.+..-+++++++.+-+=+.|... .....+++|+.|+++++ ..|.++|++-..+..
T Consensus 326 ~~~lG~eY~~~~~~~lRaG~~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~ 395 (427)
T 3pgu_A 326 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSV 395 (427)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCE
T ss_pred EEEEEEEEEcCCCEEEEEEEEEccCCCCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcc
Confidence 4555556667777665555555432 23446777878877443 245555555554444
Q ss_pred EE
Q 023981 248 LF 249 (274)
Q Consensus 248 ~l 249 (274)
++
T Consensus 396 ~~ 397 (427)
T 3pgu_A 396 KI 397 (427)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 19
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=42.36 E-value=1.1e+02 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=16.9
Q ss_pred ceEEEEEEEeecCCeEEEEEEEE
Q 023981 233 GIASALIQHEWRPKSLFTISGEV 255 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
..+++..|..+.|++.+.+.-+.
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y 138 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEY 138 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEE
Confidence 44778888888888888776554
No 20
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=37.24 E-value=58 Score=23.13 Aligned_cols=38 Identities=0% Similarity=-0.086 Sum_probs=26.8
Q ss_pred ceEEEEEEEeecCCeEEEEEEEEecccccCCceeEEEEEEc
Q 023981 233 GIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 273 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 273 (274)
.-+++.+..+.++++.+.+++.++. .++.-+|.|+.++
T Consensus 67 ~AvAvG~~~~~n~~~~~~~~~s~~~---~g~~~~gaGv~~~ 104 (105)
T 2lme_A 67 QALAIGSGYRVNESVALKAGVAYAG---SSDVMYNASFNIE 104 (105)
T ss_dssp EEEEEEEEEEESSSBCCEEEEEEET---TTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCCEEEEEEEEEcC---CCCEEEEEEEEeE
Confidence 3466667778889998888888876 4455566666553
No 21
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=36.70 E-value=1.9e+02 Score=24.29 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=64.6
Q ss_pred ceeeeEEeEEcC--CeEEEEEEcc----------------CCceEEEEEEEEeCCceeEEEEEEEEec---------cCc
Q 023981 156 TKCNAGLSFNNA--DLIASLNLNN----------------KGDSLAASYYHFVNPLTAVGAEVIHSFS---------TTD 208 (274)
Q Consensus 156 ~~~~~~~~y~~~--~~~~~~~~~~----------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~---------~~~ 208 (274)
..|.+++.|..+ .+.+.+-... ....+.+.--..+. .+.+++....... .+.
T Consensus 166 ~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g-~~~l~a~Y~~~~~~~~~~~~~~~~~ 244 (330)
T 1pho_A 166 DGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDAN-NIYLATFYSETRKMTPITGGFANKT 244 (330)
T ss_dssp SEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEET-TEEEEEEEEEEESCSCCSSSSCSEE
T ss_pred CeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEeC-CEEEEEEEEeeEEccCCCCCcceee
Confidence 357788888777 6666554311 00122222222333 3566665444321 123
Q ss_pred cEEEEEEEEeeCCCCeEEEE-----Ec---------CCceEEEEEEEeecCCeEEEEEEEEeccc------ccCCceeEE
Q 023981 209 NTITVGTQHILDPLTTLKAR-----VN---------NAGIASALIQHEWRPKSLFTISGEVDTKA------IEKSAKFGL 268 (274)
Q Consensus 209 ~~~~vg~~y~~d~~~~~k~k-----vd---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~K~G~ 268 (274)
..+.+|++|.+.+...+.+. .+ ..-.+.+.++..|+|...+-+....+..+ ...+..+++
T Consensus 245 ~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~~~~v 324 (330)
T 1pho_A 245 QNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAV 324 (330)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEE
T ss_pred EEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEEEEEEEEccccCccccCCCCCcEEEE
Confidence 46788999998666555542 11 11357888999999998887766553321 012446777
Q ss_pred EEEE
Q 023981 269 ALAL 272 (274)
Q Consensus 269 ~l~~ 272 (274)
||..
T Consensus 325 Girh 328 (330)
T 1pho_A 325 GMTY 328 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 22
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=34.98 E-value=1.2e+02 Score=25.44 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=6.1
Q ss_pred EEEEEEEeeCCCCeE
Q 023981 211 ITVGTQHILDPLTTL 225 (274)
Q Consensus 211 ~~vg~~y~~d~~~~~ 225 (274)
+.+|..+++.++..+
T Consensus 266 ~g~G~~~~l~~~~~l 280 (308)
T 3aeh_A 266 YGVGLNARFGDNTRL 280 (308)
T ss_dssp EEEEEEEEETTTEEE
T ss_pred EEEEEEEEECCCEEE
Confidence 344444444333333
No 23
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=32.85 E-value=2.1e+02 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.3
Q ss_pred cCccEEeEEEEEECCC-CccceeeeEEeEEcCCeEEEEE
Q 023981 137 TNVLSLGTDLSFDSKS-GNFTKCNAGLSFNNADLIASLN 174 (274)
Q Consensus 137 ~~~~~lG~e~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~ 174 (274)
.++|.+|+.+-||..- +...+..+|+.|-.+.+.+++.
T Consensus 63 ~~~wm~G~N~FyD~d~t~~h~R~glG~E~~~d~l~lsaN 101 (245)
T 4e1t_A 63 ENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAAN 101 (245)
T ss_dssp ETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEE
T ss_pred cCCEEEEeEEEEecCCCCCCceeEeEEEEEeCceEEEEE
Confidence 4789999999988542 3356777887777666555443
No 24
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=31.77 E-value=2.5e+02 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=11.7
Q ss_pred EEEEEcc-CCCCcEEEEEEEc
Q 023981 79 TTITVDE-PAPGLKTILSFKV 98 (274)
Q Consensus 79 ~~~~~~~-~~~glk~~~~~~~ 98 (274)
-.|.++. -..|+++.+..++
T Consensus 146 n~v~Y~sp~f~G~~~~~~Y~~ 166 (355)
T 3vy8_X 146 ISVRYDSPVFAGFSGSVQYVP 166 (355)
T ss_dssp EEEEEECCCBTTEEEEEEEEC
T ss_pred EEEEEECCccCCEEEEEEEEc
Confidence 4456654 3467776666654
No 25
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=28.25 E-value=2.5e+02 Score=23.01 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=35.0
Q ss_pred eeEEEEEEEEecc-----CccEEEEEEEEeeCCCC--e-----EEEEE-cCCceEEEEEEEeecCCeEEEEEEE
Q 023981 194 TAVGAEVIHSFST-----TDNTITVGTQHILDPLT--T-----LKARV-NNAGIASALIQHEWRPKSLFTISGE 254 (274)
Q Consensus 194 ~~~g~e~~~~~~~-----~~~~~~vg~~y~~d~~~--~-----~k~kv-ds~g~v~~~~~~~l~~~~~l~ls~~ 254 (274)
..+|+++.+.... -.+-+.+++++.+.+.. . ++..+ ++.+.+++.++-++++++++.+..+
T Consensus 190 ~~lG~r~~~~~~~~~g~~~~p~~~~~~~h~f~~~~~~~~~g~~~~~~~~~~~~~~g~G~~~~~~~~~sl~~~~~ 263 (284)
T 3qq2_A 190 GRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTGDVRTNGIGHAGAGRHGRVELGAGVDAALGKGHNLYASYE 263 (284)
T ss_dssp EEEEEEEEECEECSSSCEEEEEEEEEEEEEEEC-----------------CEEEEEEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEEEEEEEcCCCCEEEEEEEEEEEEEcCCCCeEEECCceeeccCCCCEEEEeeEEEEEECCCEEEEEEEE
Confidence 5667776665532 24567777888773321 1 22222 2336789999999999877655443
No 26
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=26.82 E-value=2.9e+02 Score=23.36 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=60.5
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc----------CCceEEEEEEEEeCCceeEEEEEEEEec-------cCccEEEEEEEEe
Q 023981 156 TKCNAGLSFNNADLIASLNLNN----------KGDSLAASYYHFVNPLTAVGAEVIHSFS-------TTDNTITVGTQHI 218 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~sy~~kv~~~~~~g~e~~~~~~-------~~~~~~~vg~~y~ 218 (274)
..|.+++.|....+.+.+-... +...+.+.--.++. .+.+++....... .+...+.+|++|.
T Consensus 170 ~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g-~~~l~~~Y~~~~~~~~~~~~~~~~~~~~ga~y~ 248 (332)
T 2fgq_X 170 RYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFG-VAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAP 248 (332)
T ss_dssp CEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECS-SCEEEEEEEEEEEEETTSCEEEEEEEEEEEEEE
T ss_pred cEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEEC-CEEEEEEEEEEEccCCCCCcceeeEEEEEEEEE
Confidence 4578888888777776654321 00122222222344 3556555443321 1345678999999
Q ss_pred eCCCCeEEEEEc---------CCceEEEEEEEeecCCeEEEEEEEEec
Q 023981 219 LDPLTTLKARVN---------NAGIASALIQHEWRPKSLFTISGEVDT 257 (274)
Q Consensus 219 ~d~~~~~k~kvd---------s~g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
+.+...+++... ..-.+.+.+++.|+++..+-+......
T Consensus 249 ~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~~~ 296 (332)
T 2fgq_X 249 VGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLK 296 (332)
T ss_dssp ETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred ecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeeeEe
Confidence 977777776532 113578899999999988877665543
No 27
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=26.06 E-value=3.1e+02 Score=23.40 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=9.8
Q ss_pred EEEEEEEEeeCCCCeEEE
Q 023981 210 TITVGTQHILDPLTTLKA 227 (274)
Q Consensus 210 ~~~vg~~y~~d~~~~~k~ 227 (274)
.+.+|+.|.|.+.+.+=+
T Consensus 293 ~~~lg~~Y~LSKrT~lY~ 310 (341)
T 3nsg_A 293 YIQAGATYYFNKNMNVWV 310 (341)
T ss_dssp EEEEEEEECCCSSEEEEE
T ss_pred EEEEEEEEEecCCEEEEE
Confidence 456666666655544433
No 28
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=25.90 E-value=3.2e+02 Score=23.58 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=57.1
Q ss_pred ceeeeEEeEEcCCeEEEEE--Ecc----------------------CCceEEEEEEEEeCCceeEEEEEEEEec------
Q 023981 156 TKCNAGLSFNNADLIASLN--LNN----------------------KGDSLAASYYHFVNPLTAVGAEVIHSFS------ 205 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~--~~~----------------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~------ 205 (274)
..|.+++.|....+.+.+- ... +.+.+.+.--..++ .+.+++..+....
T Consensus 184 ~~~~~~~~Y~~g~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~Yd~~-~~~laa~Y~~~~~~~~~~~ 262 (355)
T 3vy8_X 184 ESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDAN-DLYVSVAGQYEAAKNNEVG 262 (355)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEECSSS
T ss_pred cEEEEEEEEecCCEEEEEEhhehhccccccccccccccccccccCCcceEEEEEEEEEec-CEEEEEEEEEecccccccc
Confidence 4588888888777766554 110 00122222222333 4666665554321
Q ss_pred ------cCccEEEEEEEEeeCCCCeEEEEE--------cC-------CceEEEEEEEeecCCeEEEEEE
Q 023981 206 ------TTDNTITVGTQHILDPLTTLKARV--------NN-------AGIASALIQHEWRPKSLFTISG 253 (274)
Q Consensus 206 ------~~~~~~~vg~~y~~d~~~~~k~kv--------ds-------~g~v~~~~~~~l~~~~~l~ls~ 253 (274)
.+...++++++|.+++ .++++.. +. .-.+.+.+...|+++..+-+..
T Consensus 263 ~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~Ya~y 330 (355)
T 3vy8_X 263 SIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSA 330 (355)
T ss_dssp TTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEE
T ss_pred ccccccceeeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEEEEEE
Confidence 1345888999999954 6655433 21 2358999999999998887665
No 29
>1qd6_C Protein (outer membrane phospholipase (ompla)); anti-parallel beta barrel dimer, membrane protein; HET: HDS; 2.10A {Escherichia coli} SCOP: f.4.2.1
Probab=25.60 E-value=2.8e+02 Score=22.79 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=23.8
Q ss_pred CceEEEEEEEeecCCeEEEEEE-------EEecccccCCceeEEEEEEcC
Q 023981 232 AGIASALIQHEWRPKSLFTISG-------EVDTKAIEKSAKFGLALALKP 274 (274)
Q Consensus 232 ~g~v~~~~~~~l~~~~~l~ls~-------~~d~~~~~~~~K~G~~l~~~~ 274 (274)
.|.+-+.|...|...+.+-+-. -||.. ....++|+|+.|.+
T Consensus 191 ~G~~el~~s~Pl~~~l~~y~Qyf~GYGESLiDYn--~~~~riGiG~~l~~ 238 (240)
T 1qd6_C 191 YGGAELGLSYPITKHVRLYTQVYSGYGESLIDYN--FNQTRVGVGVMLND 238 (240)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEECSSGGGTT--CEEEEEEEEEESCC
T ss_pred cceEEEEEEEECccCeEEEEEEEeccCcchhhhc--cCCceEEEEEEEec
Confidence 4556666666666555443322 13432 23579999999864
No 30
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=25.44 E-value=1.9e+02 Score=23.75 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=22.0
Q ss_pred eEEEEEEEEeCCc--eeE-EEEEEEEeccCccEEEEEEEEeeCCCCeEEEEE
Q 023981 181 SLAASYYHFVNPL--TAV-GAEVIHSFSTTDNTITVGTQHILDPLTTLKARV 229 (274)
Q Consensus 181 ~~~~sy~~kv~~~--~~~-g~e~~~~~~~~~~~~~vg~~y~~d~~~~~k~kv 229 (274)
-+.+.+.|...+. +.+ +..+.......-..+.+|..+++.++..+.+.+
T Consensus 211 ~~~~~~~h~f~~~~~~~~~g~~~~~~~~~~~~~~g~G~~~~~~~~~sl~~~~ 262 (284)
T 3qq2_A 211 YARLGWTQEFKSTGDVRTNGIGHAGAGRHGRVELGAGVDAALGKGHNLYASY 262 (284)
T ss_dssp EEEEEEEEEEEC-----------------CEEEEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEEcCCCCeEEECCceeeccCCCCEEEEeeEEEEEECCCEEEEEEE
Confidence 4556666665442 333 222222222334567777777776666665554
No 31
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=25.39 E-value=3.1e+02 Score=23.20 Aligned_cols=65 Identities=3% Similarity=-0.085 Sum_probs=41.5
Q ss_pred ccEEEEEEEEeeCCCCeEEEEE-----c---------CCceEEEEEEEeecCCeEEEEEEEEeccc------ccCCceeE
Q 023981 208 DNTITVGTQHILDPLTTLKARV-----N---------NAGIASALIQHEWRPKSLFTISGEVDTKA------IEKSAKFG 267 (274)
Q Consensus 208 ~~~~~vg~~y~~d~~~~~k~kv-----d---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~K~G 267 (274)
...+.++++|.+.+...+.+.. + ..-.+.+.+++.|+++..+-+....+..+ ...+.-++
T Consensus 254 ~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrT~lY~~~~~~~~~~~~~~~~~~~~~~~ 333 (340)
T 2zfg_A 254 TQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVA 333 (340)
T ss_dssp EEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCTTCTTCCCCBCEEE
T ss_pred EEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecCCeEEEEEEEEeccCCccccCCCCCcEEE
Confidence 3457889999987666555421 1 11368889999999998887776654321 01234677
Q ss_pred EEEEE
Q 023981 268 LALAL 272 (274)
Q Consensus 268 ~~l~~ 272 (274)
+||..
T Consensus 334 vGirh 338 (340)
T 2zfg_A 334 VGIVY 338 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77754
No 32
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=24.43 E-value=3.1e+02 Score=22.96 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=27.3
Q ss_pred eEEEEEEEEeCCceeEEEEEEEEecc----------CccEEEEEEEEeeC
Q 023981 181 SLAASYYHFVNPLTAVGAEVIHSFST----------TDNTITVGTQHILD 220 (274)
Q Consensus 181 ~~~~sy~~kv~~~~~~g~e~~~~~~~----------~~~~~~vg~~y~~d 220 (274)
.+.+.+=.++++++.+.+|..|.... ....+.+|..|.|.
T Consensus 143 ~~G~Gv~y~lt~~~~l~~ey~y~~~~~~~~~~~~~~~~~~~~lGl~Y~Fg 192 (346)
T 3nb3_A 143 VFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFG 192 (346)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEC--------------CEEEEEEEEECC
T ss_pred eEEeEEEEEeCCCeeEEEEEEEEeccCccccccccCcccEEEEEEEEEcC
Confidence 45566667778888888888775311 23478899999993
No 33
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=23.66 E-value=3.2e+02 Score=22.79 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=38.0
Q ss_pred ceeeeEEeEEcCCeEEEEEEcc-------------CCceEEEEEEEEeCCceeEEEEEEEEecc---------CccEEEE
Q 023981 156 TKCNAGLSFNNADLIASLNLNN-------------KGDSLAASYYHFVNPLTAVGAEVIHSFST---------TDNTITV 213 (274)
Q Consensus 156 ~~~~~~~~y~~~~~~~~~~~~~-------------~~~~~~~sy~~kv~~~~~~g~e~~~~~~~---------~~~~~~v 213 (274)
..|.+++.|.-..+.+.+.... +...+.+..-.++.+.+.+++...+.... ....+.+
T Consensus 208 ~~~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~l 287 (330)
T 1pho_A 208 EAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDV 287 (330)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEE
T ss_pred heEEEEEEEEeCCEEEEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEE
Confidence 3456666666666555544321 01123334444556656555544443211 2346788
Q ss_pred EEEEeeCCCCeEEE
Q 023981 214 GTQHILDPLTTLKA 227 (274)
Q Consensus 214 g~~y~~d~~~~~k~ 227 (274)
|+.|.|.+.+.+=+
T Consensus 288 g~~Y~LSKrT~lY~ 301 (330)
T 1pho_A 288 GATYYFNKNMSAFV 301 (330)
T ss_dssp EEEEESSSSEEEEE
T ss_pred EEEEEecCCEEEEE
Confidence 88888877766644
No 34
>3slt_A Serine protease ESPP; beta barrel, membrane protein, asparagine cyclization, autoc protein transport; HET: C8E; 2.46A {Escherichia coli} PDB: 3slj_A* 3slo_A* 2qom_A
Probab=23.19 E-value=2.4e+02 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=11.8
Q ss_pred EEEEEEEEeeCCCCeEEEEE
Q 023981 210 TITVGTQHILDPLTTLKARV 229 (274)
Q Consensus 210 ~~~vg~~y~~d~~~~~k~kv 229 (274)
.+.+|...++.++..+-+.+
T Consensus 272 ~~g~G~~~~l~~~~sl~~~~ 291 (313)
T 3slt_A 272 LMSVGLNAEIRDNVRFGLEF 291 (313)
T ss_dssp EEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEE
Confidence 45666666665555555554
No 35
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Probab=20.74 E-value=3.9e+02 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=12.1
Q ss_pred EEEEEcc-CCCCcEEEEEEEc
Q 023981 79 TTITVDE-PAPGLKTILSFKV 98 (274)
Q Consensus 79 ~~~~~~~-~~~glk~~~~~~~ 98 (274)
-.|.++. -..|+++.+..++
T Consensus 146 N~v~Y~sp~~~Gf~~~a~Y~~ 166 (355)
T 3a2s_X 146 ISVRYDSPVFAGFSGSVQYVP 166 (355)
T ss_dssp EEEEEECCCBTTEEEEEEEEC
T ss_pred eeEEEcCCccCCEEEEEEEec
Confidence 3566654 4567777666654
Done!