Query 023983
Match_columns 274
No_of_seqs 151 out of 194
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 16:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 5.6E-35 1.9E-39 241.7 11.4 116 13-138 7-123 (124)
2 1msz_A DNA-binding protein smu 98.7 2.4E-08 8E-13 77.9 6.0 64 37-104 17-80 (86)
3 2cpm_A Sperm-associated antige 98.2 2.9E-06 9.8E-11 66.9 7.7 63 37-102 12-74 (94)
4 1ug8_A Poly(A)-specific ribonu 97.3 0.00076 2.6E-08 52.6 7.2 44 32-76 7-50 (87)
5 3gku_A Probable RNA-binding pr 88.4 0.76 2.6E-05 41.0 6.1 60 37-101 149-209 (225)
6 3d45_A Poly(A)-specific ribonu 73.6 0.68 2.3E-05 45.4 0.0 44 32-76 170-213 (507)
7 2a1r_A Poly(A)-specific ribonu 69.0 0.99 3.4E-05 43.3 0.0 43 33-76 176-218 (430)
8 3e11_A Predicted zincin-like m 30.1 19 0.00064 28.6 1.4 17 67-83 91-107 (114)
9 3f3b_A Phage-like element PBSX 26.6 2.3 8E-05 34.9 -4.5 19 65-84 2-20 (126)
10 2fhm_A Probable acylphosphatas 20.1 1E+02 0.0034 22.9 3.8 32 66-99 16-47 (91)
11 1w2i_A Acylphosphatase; hydrol 20.1 1E+02 0.0035 22.9 3.8 32 66-99 18-49 (91)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=100.00 E-value=5.6e-35 Score=241.75 Aligned_cols=116 Identities=28% Similarity=0.497 Sum_probs=101.9
Q ss_pred hcccCCCCchHHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhhhhccceeeecCCcCC
Q 023983 13 IVNERESMVDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEG 91 (274)
Q Consensus 13 ~~~~~~~~vd~~L~eAL~-nprDR~~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dg 91 (274)
..+..+.+||+||++||+ ||+||++||+||++|++||+++.++.++|||| |||+|||||+||+||||+|.+ |+
T Consensus 7 ~~d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pm-nSy~RllvHrvAe~ygL~h~~-----d~ 80 (124)
T 1whr_A 7 GTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNV-----DQ 80 (124)
T ss_dssp SSCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEE-----CS
T ss_pred cccCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCC-CHHHHHHHHHHHHHhCcCccc-----cC
Confidence 356788999999999996 99999999999999999999999889999999 999999999999999999976 34
Q ss_pred CccEEEEEecCCCCCCcccccccccCCCCcCchhhhhhhheeeCCCC
Q 023983 92 LGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNA 138 (274)
Q Consensus 92 s~~~Iiv~KT~~triP~vrLsdi~~~~~~~~~~~~~~k~~ImrR~~~ 138 (274)
.+.+|+|+||++|++|+++|+|+++.... .+.++..|+||++.
T Consensus 81 ~~r~VvV~Kt~~tr~P~~~lse~~~~~~~----~~~~~~~vl~r~~~ 123 (124)
T 1whr_A 81 TGKAVIINKTSNTRIPEQRFSEHIKDEKN----TEFQQRFILSGPSS 123 (124)
T ss_dssp SCSSEEEECCTTCCCCSCCGGGTSCSCSC----CCCCCSSCCCCCCC
T ss_pred CCCEEEEEeCCCCCCChHHHHHHhccccc----ccchheeeEecCCC
Confidence 56889999999999999999999865322 23446678899853
No 2
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=98.68 E-value=2.4e-08 Score=77.92 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhhhhccceeeecCCcCCCccEEEEEecCCC
Q 023983 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAES 104 (274)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dgs~~~Iiv~KT~~t 104 (274)
..+.|+..|..|+.+ ....++|||..++++|++||.||+-|||.|..... |....|+|+|...+
T Consensus 17 ~~~~i~~~l~~F~~~-~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G~---G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMAS-KKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGE---GKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHH-TCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEECS---SSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCcceeeC---CCCeEEEEEEeCCc
Confidence 456799999999954 56789999955999999999999999999999763 45578999997654
No 3
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=2.9e-06 Score=66.85 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhhhhccceeeecCCcCCCccEEEEEecC
Q 023983 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA 102 (274)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dgs~~~Iiv~KT~ 102 (274)
|--+.|+.|..|++....+.+.|+|| |+|.|-+||.+++.|||.+...+.++. -.+|||++..
T Consensus 12 yR~~re~~L~~la~~~g~~~v~L~PM-~~~eRriIH~~l~~~gl~S~S~Geep~--~R~VvI~~~~ 74 (94)
T 2cpm_A 12 FRKRMEKEVSDFIQDSGQIKKKFQPM-NKIERSILHDVVEVAGLTSFSFGEDDD--CRYVMIFKKE 74 (94)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEECCCC-CSSHHHHHHHHHHHHTCEEEEECSSSS--CCEEEEECST
T ss_pred HHHHHHHHHHHHHHhcCCCceEeCCC-CHHHHHHHHHHHHHCCCEEEEecCCCC--ceEEEEEeCC
Confidence 55688999999998886556999999 999999999999999999999775432 1478888654
No 4
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=97.26 E-value=0.00076 Score=52.60 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhh
Q 023983 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (274)
Q Consensus 32 prDR~~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (274)
|.++-||=.+-..|.+|++++....++++|+ |+|+|-|+++.+.
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~~~l~l~pC-N~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 50 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCceecCCc-hHHHHHHHHHHHH
Confidence 5788899999999999999998788999999 9999999999854
No 5
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=88.41 E-value=0.76 Score=41.02 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhhhh-ccceeeecCCcCCCccEEEEEec
Q 023983 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHY-GLVTMVQENGIEGLGNRILVRKT 101 (274)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yy-gL~h~v~d~~~dgs~~~Iiv~KT 101 (274)
.|-+|-+.+.+=+.... ..+.|.|| |+|.|-+||...+-+ ++.+.....++ ..+|||...
T Consensus 149 ~L~~lA~~~A~kV~~tg-~~v~L~PM-~~~ERriIH~al~~~~~V~T~SeGeep---~R~VVI~~~ 209 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTK-RSVSLEPM-NPYERRIIHAALQNDKYVVTRSDGEEP---FRHVIISLK 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHC-SCEECCCC-CHHHHHHHHHHTTTCSSEEEEEESSTT---SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC-CEEEccCC-CHHHHHHHHHHHccCCCcEEEEeecCC---CeEEEEEEc
Confidence 34444444444444443 34789999 999999999976654 88888766443 356777643
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.57 E-value=0.68 Score=45.35 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhh
Q 023983 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (274)
Q Consensus 32 prDR~~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (274)
+.|+.||-++-..|.+|+++.....+.++++ |+|+|.|+|++-.
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~-n~~~r~Lv~q~l~ 213 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 213 (507)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccCCC-cHHHHHHHHHHHH
Confidence 5678888899999999999887667899999 9999999998753
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=69.02 E-value=0.99 Score=43.34 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccccccCCCCChHHHHHHHHHhh
Q 023983 33 RHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (274)
Q Consensus 33 rDR~~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (274)
.++.+|-++-+.|.+|+.+.....+.++|+ |+|+|.|+|++-.
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~-~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEENKNLDLEPC-TGFQRKLIYQTLS 218 (430)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC-cHHHHHHHHHHHH
Confidence 456677777788889998887677999998 9999999999754
No 8
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=30.07 E-value=19 Score=28.61 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhcccee
Q 023983 67 LRLAAHRVSQHYGLVTM 83 (274)
Q Consensus 67 ~RLLvHRvA~yygL~h~ 83 (274)
+.-++|.+|.|||+...
T Consensus 91 ~~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 91 RKTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 45689999999999643
No 9
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=26.63 E-value=2.3 Score=34.91 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhhhccceee
Q 023983 65 SYLRLAAHRVSQHYGLVTMV 84 (274)
Q Consensus 65 SY~RLLvHRvA~yygL~h~v 84 (274)
||++||+||| +.|+|+...
T Consensus 2 Syq~lL~~RC-DIYHl~~~e 20 (126)
T 3f3b_A 2 SYRQMLIHRC-DIYHEAAQA 20 (126)
T ss_dssp --CCCCCEEE-EEECCEEEC
T ss_pred CHHHhhhccc-ceechhhcc
Confidence 8999999986 677885443
No 10
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=20.15 E-value=1e+02 Score=22.88 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhccceeeecCCcCCCccEEEEE
Q 023983 66 YLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR 99 (274)
Q Consensus 66 Y~RLLvHRvA~yygL~h~v~d~~~dgs~~~Iiv~ 99 (274)
..|-.++++|.-+||.-+| .|..||+ ..|++.
T Consensus 16 GFR~~v~~~A~~lgl~G~V-~N~~dG~-Vei~~e 47 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWV-KNRDDGR-VEILAE 47 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEE-EECTTSC-EEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECCCCc-EEEEEE
Confidence 5689999999999999998 4444553 344444
No 11
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=20.10 E-value=1e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhccceeeecCCcCCCccEEEEE
Q 023983 66 YLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVR 99 (274)
Q Consensus 66 Y~RLLvHRvA~yygL~h~v~d~~~dgs~~~Iiv~ 99 (274)
..|-.++++|.-+||.-+| .|..||+ ..|++.
T Consensus 18 GFR~~v~~~A~~lgL~G~V-~N~~dG~-Vei~~~ 49 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWV-RNLPDGS-VEAVLE 49 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEE-EECTTSC-EEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECCCCC-EEEEEE
Confidence 5789999999999999998 4444553 334444
Done!