Citrus Sinensis ID: 023985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA
cHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEccccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccccccEEccccccccEEEEEEEccccccEEEccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHcccccccccccccc
cHHHHHHHHHHHHccHHHHHHHHHccccccccccEcccccHHcEEEEEEcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEEccccccccccHHcccccccccccEEEEEcccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEEEEcccccEEEEEEEEccccccEEcccHHHcccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccccccEccc
MDTVERLTKAHYRKCMEQRFKELVASRALEGiqtevndmdwestfyvrhlpqstinevpdlDEEYRKVMKEFALKLEKLAEELLDLLCENLGlekgylkkvfhgangptfgtkvsnyppcpkpdlikglrahtdaGGIILLFQDdkvsglqllkdgqwidvpplrhsIVVNLGDQievitngkyksVEHRVVsqtdgegrmslasfynpgsdaviypapallekeaekkqvypkfvfEDYMKLyvplkfqakeprFEAMKAVETnvnlgpiata
mdtverltkahyrKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVrhlpqstinevpdldEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPtfgtkvsnyppCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEvitngkyksveHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVetnvnlgpiata
MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMkefalkleklaeelldllcenlglekGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA
**********HYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVS*******MSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRF******************
MDTVERLTKAHYRKCMEQRF*************TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVE****LGP****
MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA
MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETN*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVxxxxxxxxxxxxxxxxxxxxxNLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9MB94319 1-aminocyclopropane-1-car N/A no 0.996 0.855 0.843 1e-138
Q08506319 1-aminocyclopropane-1-car N/A no 0.992 0.852 0.839 1e-136
Q08507320 1-aminocyclopropane-1-car N/A no 0.996 0.853 0.826 1e-134
Q8S932318 1-aminocyclopropane-1-car N/A no 0.992 0.855 0.849 1e-133
Q08508319 1-aminocyclopropane-1-car N/A no 0.992 0.852 0.806 1e-132
P31237319 1-aminocyclopropane-1-car N/A no 0.992 0.852 0.791 1e-131
Q04644318 1-aminocyclopropane-1-car N/A no 0.989 0.852 0.797 1e-131
P54847320 1-aminocyclopropane-1-car N/A no 0.996 0.853 0.785 1e-130
P05116315 1-aminocyclopropane-1-car N/A no 0.981 0.853 0.807 1e-130
P24157316 1-aminocyclopropane-1-car N/A no 0.985 0.854 0.807 1e-129
>sp|Q9MB94|ACCO_PRUMU 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 Back     alignment and function desciption
 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/275 (84%), Positives = 259/275 (94%), Gaps = 2/275 (0%)

Query: 1   MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
           +DTVERLTK HYR+C+EQRFKELVAS+ LE ++TEVNDMDWESTFY+RHLP+S I+EVPD
Sbjct: 46  LDTVERLTKEHYRQCLEQRFKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPD 105

Query: 61  LDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPC 120
           L+++YR VMKEFALKLEKLAE+LLDLLCENLGLEKGYLKK F+G NGPTFGTKVSNYPPC
Sbjct: 106 LEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPC 165

Query: 121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
           P P+LIKGLRAHTDAGG+ILLFQDDKVSGLQLLKDGQWIDVPP+RHSIV+NLGDQ+EVIT
Sbjct: 166 PNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVIT 225

Query: 181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKK-QVYPKFVFED 239
           NGKY+SVEHRV++QTDG  RMS+ASFYNPGSDAVIYPAP L+EKEAE+K QVYPKFVFED
Sbjct: 226 NGKYRSVEHRVIAQTDGT-RMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFED 284

Query: 240 YMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA 274
           YMKLY  LKFQ KEPRFEAMKAVETN++L PIATA
Sbjct: 285 YMKLYAGLKFQPKEPRFEAMKAVETNISLVPIATA 319

Prunus mume (taxid: 102107)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 7EC: .EC: 4
>sp|Q08506|ACCO1_PETHY 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1 Back     alignment and function description
>sp|Q08507|ACCO3_PETHY 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1 Back     alignment and function description
>sp|Q8S932|ACCO_DIOKA 1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q08508|ACCO4_PETHY 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1 Back     alignment and function description
>sp|P31237|ACCO_ACTDE 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1 Back     alignment and function description
>sp|Q04644|ACCO1_CUCME 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|P54847|ACCO3_CUCME 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|P05116|ACCO1_SOLLC 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2 Back     alignment and function description
>sp|P24157|ACCO4_SOLLC 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
12232032319 ACC oxidase [Citrus sinensis] 1.0 0.858 0.996 1e-159
83320484278 1-aminocyclopropane-1-carboxylate oxidas 0.941 0.928 0.984 1e-147
37719660318 1-aminocyclopropane-1-carboxylate oxidas 0.996 0.858 0.869 1e-140
148353863318 ACC oxidase 2 [Hevea brasiliensis] 0.996 0.858 0.865 1e-139
225447149326 PREDICTED: 1-aminocyclopropane-1-carboxy 0.996 0.837 0.857 1e-139
297739216310 unnamed protein product [Vitis vinifera] 0.996 0.880 0.857 1e-139
225447147318 PREDICTED: 1-aminocyclopropane-1-carboxy 0.996 0.858 0.857 1e-139
343794776318 ACC oxidase 5 [Actinidia deliciosa] 0.996 0.858 0.857 1e-139
224129046319 1-aminocyclopropane-1-carboxylate [Popul 0.996 0.855 0.862 1e-139
148353859318 ACC oxidase 3 [Hevea brasiliensis] 0.996 0.858 0.854 1e-138
>gi|12232032|gb|AAG49361.1| ACC oxidase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/274 (99%), Positives = 274/274 (100%)

Query: 1   MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
           MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD
Sbjct: 46  MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 105

Query: 61  LDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPC 120
           LDEEYRKVMKEFALKLEKLAEELLDLLCENLG+EKGYLKKVFHGANGPTFGTKVSNYPPC
Sbjct: 106 LDEEYRKVMKEFALKLEKLAEELLDLLCENLGIEKGYLKKVFHGANGPTFGTKVSNYPPC 165

Query: 121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
           PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT
Sbjct: 166 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 225

Query: 181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 240
           NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY
Sbjct: 226 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 285

Query: 241 MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA 274
           MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA
Sbjct: 286 MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA 319

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|83320484|gb|ABC02869.1| 1-aminocyclopropane-1-carboxylate oxidase [Citrus aurantium] Back     alignment and taxonomy information
>gi|37719660|gb|AAP41850.1| 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis] gi|148353857|emb|CAN85570.1| ACC oxidase 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|148353863|emb|CAN85573.1| ACC oxidase 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|225447149|ref|XP_002275341.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 3 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739216|emb|CBI28867.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447147|ref|XP_002275320.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 3 isoform 1 [Vitis vinifera] gi|408451522|gb|AFU66005.1| 1-aminocyclopropane-1-carboxylic acid oxidase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|343794776|gb|AEM62884.1| ACC oxidase 5 [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|224129046|ref|XP_002320487.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|118488512|gb|ABK96069.1| unknown [Populus trichocarpa] gi|222861260|gb|EEE98802.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] Back     alignment and taxonomy information
>gi|148353859|emb|CAN85571.1| ACC oxidase 3 [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2205568323 EFE "ethylene-forming enzyme" 1.0 0.848 0.690 1.6e-104
TAIR|locus:2008905320 AT1G12010 [Arabidopsis thalian 0.974 0.834 0.628 1.9e-92
TAIR|locus:2027099320 ACO2 "ACC oxidase 2" [Arabidop 0.974 0.834 0.632 1e-91
TAIR|locus:2050364310 ACO1 "ACC oxidase 1" [Arabidop 0.905 0.8 0.419 8.9e-54
TAIR|locus:2031422307 AT1G77330 [Arabidopsis thalian 0.923 0.824 0.437 1.1e-50
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.733 0.541 0.352 2.3e-30
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.5 0.384 0.414 4.9e-30
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.744 0.598 0.363 2.1e-29
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.927 0.729 0.311 3.4e-29
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.737 0.572 0.325 2.2e-27
TAIR|locus:2205568 EFE "ethylene-forming enzyme" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 192/278 (69%), Positives = 230/278 (82%)

Query:     1 MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
             +D VE++TK HY+KCME+RFKE + +R L+ +++EVND+DWESTFY++HLP S I++VPD
Sbjct:    46 LDKVEKMTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPD 105

Query:    61 LDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPC 120
             LD++YR +M                          GYLKKVF+G+  PTFGTKVSNYPPC
Sbjct:   106 LDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPC 165

Query:   121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
             P PDL+KGLRAHTDAGGIILLFQDDKVSGLQLLKDG+W+DVPP++HSIVVNLGDQ+EVIT
Sbjct:   166 PNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVIT 225

Query:   181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEK--KQVYPKFVFE 238
             NGKYKSVEHRV+SQTDGEGRMS+ASFYNPGSD+VI+PAP L+ KEAEK  K+ YP+FVFE
Sbjct:   226 NGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFE 285

Query:   239 DYMKLYVPLKFQAKEPRFEAMKAVETNV--NLGPIATA 274
             DYMKLY  +KFQAKEPRFEAMKA+ET V  N+GP+ATA
Sbjct:   286 DYMKLYSAVKFQAKEPRFEAMKAMETTVANNVGPLATA 323
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009693 "ethylene biosynthetic process" evidence=ISS;TAS
GO:0071398 "cellular response to fatty acid" evidence=IEP
GO:0009620 "response to fungus" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0009815 "1-aminocyclopropane-1-carboxylate oxidase activity" evidence=ISS
TAIR|locus:2008905 AT1G12010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027099 ACO2 "ACC oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050364 ACO1 "ACC oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031422 AT1G77330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65378ACCO3_ARATH1, ., 1, 4, ., 1, 7, ., 40.70070.98170.8406nono
P07920ACCO2_SOLLC1, ., 1, 4, ., 1, 7, ., 40.78260.98170.8512N/Ano
P31237ACCO_ACTDE1, ., 1, 4, ., 1, 7, ., 40.79190.99270.8526N/Ano
P31239ACCO_PEA1, ., 1, 4, ., 1, 7, ., 40.77650.98900.8548N/Ano
P31238ACCO1_DORSP1, ., 1, 4, ., 1, 7, ., 40.71270.99270.8318N/Ano
Q9ZQZ1ACCO_DENCR1, ., 1, 4, ., 1, 7, ., 40.71480.96710.8333N/Ano
P31528ACCO_DIACA1, ., 1, 4, ., 1, 7, ., 40.76270.98540.8411N/Ano
Q04644ACCO1_CUCME1, ., 1, 4, ., 1, 7, ., 40.79710.98900.8522N/Ano
Q00985ACCO1_MALDO1, ., 1, 4, ., 1, 7, ., 40.75540.98170.8566N/Ano
Q9MB94ACCO_PRUMU1, ., 1, 4, ., 1, 7, ., 40.84360.99630.8557N/Ano
P05116ACCO1_SOLLC1, ., 1, 4, ., 1, 7, ., 40.80720.98170.8539N/Ano
A2Z1W9ACCO1_ORYSI1, ., 1, 4, ., 1, 7, ., 40.70740.96710.8229N/Ano
Q0J1C1ACCO1_ORYSJ1, ., 1, 4, ., 1, 7, ., 40.70370.96710.8229nono
Q09052ACCO1_BRAJU1, ., 1, 4, ., 1, 7, ., 40.68860.97810.8375N/Ano
Q8S932ACCO_DIOKA1, ., 1, 4, ., 1, 7, ., 40.84980.99270.8553N/Ano
Q41931ACCO2_ARATH1, ., 1, 4, ., 1, 7, ., 40.70070.98170.8406nono
Q43792ACCO_TOBAC1, ., 1, 4, ., 1, 7, ., 40.80070.99270.8526N/Ano
P19464ACCO_PERAE1, ., 1, 4, ., 1, 7, ., 40.75890.98540.8437N/Ano
Q06588ACCO4_ARATH1, ., 1, 4, ., 1, 7, ., 40.76611.00.8482yesno
Q39705ACCO2_DORSP1, ., 1, 4, ., 1, 7, ., 40.70350.99270.8369N/Ano
O48882ACCO2_MALDO1, ., 1, 4, ., 1, 7, ., 40.74450.98170.8151N/Ano
P24157ACCO4_SOLLC1, ., 1, 4, ., 1, 7, ., 40.80720.98540.8544N/Ano
Q08506ACCO1_PETHY1, ., 1, 4, ., 1, 7, ., 40.83940.99270.8526N/Ano
Q08507ACCO3_PETHY1, ., 1, 4, ., 1, 7, ., 40.82600.99630.8531N/Ano
Q08508ACCO4_PETHY1, ., 1, 4, ., 1, 7, ., 40.80650.99270.8526N/Ano
P54847ACCO3_CUCME1, ., 1, 4, ., 1, 7, ., 40.78540.99630.8531N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.4LOW CONFIDENCE prediction!
3rd Layer1.14.170.983
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.17.40.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025952001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (318 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00026899001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)
     •  0.899
GSVIVG00016601001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (445 aa)
     •  0.899
ACS1
SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_1179, whole ge [...] (469 aa)
     •  0.899
GSVIVG00008183001
SubName- Full=Chromosome undetermined scaffold_1274, whole genome shotgun sequence; (163 aa)
  •     0.447
GSVIVG00004995001
SubName- Full=Chromosome undetermined scaffold_884, whole genome shotgun sequence; (92 aa)
  •     0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 0.0
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-105
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-58
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-48
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-47
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-47
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-45
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-42
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-40
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-39
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-38
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-37
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-35
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-34
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 9e-34
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-33
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-30
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-30
PLN02904357 PLN02904, PLN02904, oxidoreductase 9e-29
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-28
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-26
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-23
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-21
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 8e-19
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-17
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-13
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information 
 Score =  567 bits (1464), Expect = 0.0
 Identities = 231/274 (84%), Positives = 259/274 (94%), Gaps = 1/274 (0%)

Query: 1   MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
           MD VE++TK HY+KCMEQRFKE+VAS+ LEG+QTEV D+DWESTF++RHLP+S + ++PD
Sbjct: 49  MDEVEKMTKEHYKKCMEQRFKEMVASKGLEGVQTEVEDLDWESTFFLRHLPESNLADIPD 108

Query: 61  LDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPC 120
           LD+EYRKVMK+FAL+LEKLAEELLDLLCENLGLEKGYLKK FHG+ GPTFGTKVSNYPPC
Sbjct: 109 LDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPC 168

Query: 121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
           PKPDL+KGLRAHTDAGGIILLFQDDKVSGLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVIT
Sbjct: 169 PKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVIT 228

Query: 181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 240
           NGKYKSV HRVV+QTDG  RMS+ASFYNPGSDAVIYPAPAL+EKEAE++QVYPKFVFEDY
Sbjct: 229 NGKYKSVMHRVVAQTDGN-RMSIASFYNPGSDAVIYPAPALVEKEAEEEQVYPKFVFEDY 287

Query: 241 MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA 274
           MKLY  LKFQAKEPRFEAMKA+ET VNL PIATA
Sbjct: 288 MKLYAGLKFQAKEPRFEAMKAMETTVNLNPIATA 321

Length = 321
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02216357 protein SRG1 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 98.57
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.31
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.6
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.98
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.0
TIGR02466201 conserved hypothetical protein. This family consis 91.39
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 88.17
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 80.75
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-67  Score=482.68  Aligned_cols=273  Identities=85%  Similarity=1.372  Sum_probs=244.5

Q ss_pred             ChHHHHHHHHHhcCCHHHHhhchhcCCCccccccCCCCCCceeeeeeeccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 023985            1 MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLA   80 (274)
Q Consensus         1 l~~~~~~~~~FF~lP~eeK~~~~~~~~~~~g~~~~~~~~d~~e~~~~~~~p~~~~n~wP~~~~~fr~~~~~y~~~~~~la   80 (274)
                      ++++++++++||+||.|+|+++.....||.++..+....||+|.|.+...|..+.+.||+.+++||+.+++|+++|.+|+
T Consensus        49 ~~~~~~~~~~fF~LP~e~K~~~~~~~~gy~~~~~~~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~  128 (321)
T PLN02299         49 MDEVEKMTKEHYKKCMEQRFKEMVASKGLEGVQTEVEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLA  128 (321)
T ss_pred             HHHHHHHHHHHhCCCHHHHHhcccCCCCcccccccCCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999986566788877666667899999988766666678899988999999999999999999


Q ss_pred             HHHHHHHHHHcCCchhhhhhhhcCCCCCceeeeeeccCCCCCCCCCCCCcccccCCceEEEEecCCCCCceeeeCCceEE
Q 023985           81 EELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWID  160 (274)
Q Consensus        81 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~g~W~~  160 (274)
                      .+||++||++|||++++|.+.+.....+...+|++|||||+.++..+|+++|||+|+||||+||++++||||+++|+|++
T Consensus       129 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~  208 (321)
T PLN02299        129 EELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVD  208 (321)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEE
Confidence            99999999999999999988775423345579999999999888888999999999999999974599999999999999


Q ss_pred             cCCCCCeEEEEcchhhHHhhCCCccccccccccCCCCCCeeEEEeeecCCCCceEecCcccccccccccCCCCCccHHHH
Q 023985          161 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY  240 (274)
Q Consensus       161 v~p~~g~~vVniGd~l~~~SnG~~~s~~HRVv~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~p~~y~~~~~~ey  240 (274)
                      |+|.||++||||||+||+||||+|||++|||+.+..+. |||++||+.|+.|++|+|++++++++.++|++|+|++++||
T Consensus       209 V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRVv~~~~~~-R~Si~~F~~p~~d~~i~pl~~~v~~~~~~p~~y~p~~~~e~  287 (321)
T PLN02299        209 VPPMRHSIVVNLGDQLEVITNGKYKSVMHRVVAQTDGN-RMSIASFYNPGSDAVIYPAPALVEKEAEEEQVYPKFVFEDY  287 (321)
T ss_pred             CCCCCCeEEEEeCHHHHHHhCCceecccceeecCCCCC-EEEEEEEecCCCCceEeCchHhcCcccCCCcCCCCCcHHHH
Confidence            99999999999999999999999999999999887666 99999999999999999999999865336899999999999


Q ss_pred             HHHHhhcccCCCchhhHhhhhhhhhcccCCCCCC
Q 023985          241 MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA  274 (274)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (274)
                      ++.+...+.+.++..++.+++-.+-.++.+++|+
T Consensus       288 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (321)
T PLN02299        288 MKLYAGLKFQAKEPRFEAMKAMETTVNLNPIATA  321 (321)
T ss_pred             HHHHHHcccCCccchhhhhhccccccccCccCCC
Confidence            9999988888766778999988788999999885

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-114
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-18
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-18
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-17
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-08
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/273 (73%), Positives = 219/273 (80%), Gaps = 2/273 (0%)
Query: 2   DTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDL 61
           DTVE+ TK HY+KC EQRFKELVAS+ALEG+Q EV D DWESTF+++HLP S I+EVPDL
Sbjct: 47  DTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDL 106
Query: 62  DEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCP 121
           DEEYR+V                           GYLK  F+G+ GP FGTKVSNYPPCP
Sbjct: 107 DEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCP 166
Query: 122 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITN 181
           KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP RHSIVVNLGDQ+EVITN
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITN 226
Query: 182 GKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEK-KQVYPKFVFEDY 240
           GKYKSV HRV++Q DG  R SLASFYNPGSDAVIYPAPAL+EKEAE+ KQVYPKFVF+DY
Sbjct: 227 GKYKSVXHRVIAQKDG-ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
Query: 241 MKLYVPLKFQAKEPRFEAMKAVETNVNLGPIAT 273
            KLY  LKFQAKEPRFEA KA ET+V   PIAT
Sbjct: 286 XKLYAGLKFQAKEPRFEAXKAXETDVKXDPIAT 318
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-145
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-114
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 7e-55
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-54
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-50
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-49
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  409 bits (1053), Expect = e-145
 Identities = 229/274 (83%), Positives = 254/274 (92%), Gaps = 2/274 (0%)

Query: 1   MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
           MDTVE++TK HY+KCMEQRFKELVAS+ALEG+Q EV DMDWESTF+++HLP S I+EVPD
Sbjct: 46  MDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPD 105

Query: 61  LDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPC 120
           LDEEYR+VM++FA +LEKLAEELLDLLCENLGLEKGYLK  F+G+ GP FGTKVSNYPPC
Sbjct: 106 LDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPC 165

Query: 121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
           PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVIT
Sbjct: 166 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVIT 225

Query: 181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKK-QVYPKFVFED 239
           NGKYKSV HRV++Q DG  RMSLASFYNPGSDAVIYPAPAL+EKEAE+  QVYPKFVF+D
Sbjct: 226 NGKYKSVMHRVIAQKDGA-RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD 284

Query: 240 YMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIAT 273
           YMKLY  LKFQAKEPRFEAMKA+ET+V + PIAT
Sbjct: 285 YMKLYAGLKFQAKEPRFEAMKAMETDVKMDPIAT 318
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.41
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.9
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 89.96
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 89.6
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 89.07
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=1.9e-70  Score=500.73  Aligned_cols=273  Identities=84%  Similarity=1.348  Sum_probs=233.7

Q ss_pred             ChHHHHHHHHHhcCCHHHHhhchhcCCCccccccCCCCCCceeeeeeeccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 023985            1 MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLA   80 (274)
Q Consensus         1 l~~~~~~~~~FF~lP~eeK~~~~~~~~~~~g~~~~~~~~d~~e~~~~~~~p~~~~n~wP~~~~~fr~~~~~y~~~~~~la   80 (274)
                      ++++++++++||+||.|+|+++.....||.+++.+.+..||+|+|.+...|....|.||+.+++||+.+++|+++|.+|+
T Consensus        46 ~~~~~~~~~~FF~lP~e~K~~~~~~~~Gy~~~~~e~~~~d~ke~~~~~~~p~~~~~~wP~~~~~fr~~~~~y~~~~~~l~  125 (319)
T 1w9y_A           46 MDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLA  125 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHhhhccCCCCCCcccccCCCCChhhheeeecCCcccccccccchhHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999986555678777666778999999999877766678999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCchhhhhhhhcCCCCCceeeeeeccCCCCCCCCCCCCcccccCCceEEEEecCCCCCceeeeCCceEE
Q 023985           81 EELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWID  160 (274)
Q Consensus        81 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~g~W~~  160 (274)
                      ..||++||++|||++++|.+.+....++.+.+|++|||||++++..+|+++|||+|+||||+||++++||||+++|+|++
T Consensus       126 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~  205 (319)
T 1w9y_A          126 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWID  205 (319)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEE
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEE
Confidence            99999999999999999999886422355789999999999988889999999999999999964599999999999999


Q ss_pred             cCCCCCeEEEEcchhhHHhhCCCccccccccccCCCCCCeeEEEeeecCCCCceEecCccccccccc-ccCCCCCccHHH
Q 023985          161 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAE-KKQVYPKFVFED  239 (274)
Q Consensus       161 v~p~~g~~vVniGd~l~~~SnG~~~s~~HRVv~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~-~p~~y~~~~~~e  239 (274)
                      |+|+||++||||||+||+||||+|||++|||+.++.++ |||++||+.|+.|++|.|++++++++.+ +|++|++++++|
T Consensus       206 V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~-R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~e  284 (319)
T 1w9y_A          206 VPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGA-RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD  284 (319)
T ss_dssp             CCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSC-CEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHH
T ss_pred             cccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCC-ceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHH
Confidence            99999999999999999999999999999999987777 9999999999999999999999986311 499999999999


Q ss_pred             HHHHHhhcccCCCchhhHhhhhhhhhcccCCCCCC
Q 023985          240 YMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA  274 (274)
Q Consensus       240 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (274)
                      |+..++..++.++...++.+|+.++-...+||||+
T Consensus       285 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T 1w9y_A          285 YMKLYAGLKFQAKEPRFEAMKAMETDVKMDPIATV  319 (319)
T ss_dssp             HHHTTTTTTCSSHHHHHHHHHHC------------
T ss_pred             HHHHHHhhhcCcchhHHHHHHHHhhhcccCCcccC
Confidence            99999998998886668999999998899999996
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-78
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-43
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-35
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 9e-26
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  238 bits (607), Expect = 1e-78
 Identities = 224/264 (84%), Positives = 246/264 (93%), Gaps = 2/264 (0%)

Query: 1   MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPD 60
           MDTVE++TK HY+KCMEQRFKELVAS+ALEG+Q EV DMDWESTF+++HLP S I+EVPD
Sbjct: 45  MDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPD 104

Query: 61  LDEEYRKVMKEFALKLEKLAEELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPC 120
           LDEEYR+VM++FA +LEKLAEELLDLLCENLGLEKGYLK  F+G+ GP FGTKVSNYPPC
Sbjct: 105 LDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPC 164

Query: 121 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVIT 180
           PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVIT
Sbjct: 165 PKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVIT 224

Query: 181 NGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAE-KKQVYPKFVFED 239
           NGKYKSV HRV++Q DG  RMSLASFYNPGSDAVIYPAPAL+EKEAE  KQVYPKFVF+D
Sbjct: 225 NGKYKSVMHRVIAQKDGA-RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD 283

Query: 240 YMKLYVPLKFQAKEPRFEAMKAVE 263
           YMKLY  LKFQAKEPRFEAMKA+E
Sbjct: 284 YMKLYAGLKFQAKEPRFEAMKAME 307
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 87.13
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 81.65
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.3e-65  Score=463.94  Aligned_cols=261  Identities=85%  Similarity=1.370  Sum_probs=235.6

Q ss_pred             ChHHHHHHHHHhcCCHHHHhhchhcCCCccccccCCCCCCceeeeeeeccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 023985            1 MDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMKEFALKLEKLA   80 (274)
Q Consensus         1 l~~~~~~~~~FF~lP~eeK~~~~~~~~~~~g~~~~~~~~d~~e~~~~~~~p~~~~n~wP~~~~~fr~~~~~y~~~~~~la   80 (274)
                      ++++++++++||+||.|+|+++.....+|.||..+....||+|.|.+...+..+.+.||+.+++||+.+++|++.|.+|+
T Consensus        45 i~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~la  124 (307)
T d1w9ya1          45 MDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLA  124 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCccccccccChhhhcccccccccCcccCCccchHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999987666778888777788999999999877777778899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCchhhhhhhhcCCCCCceeeeeeccCCCCCCCCCCCCcccccCCceEEEEecCCCCCceeeeCCceEE
Q 023985           81 EELLDLLCENLGLEKGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWID  160 (274)
Q Consensus        81 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~g~W~~  160 (274)
                      .+|+++|+++||+++++|.+.+....++.+.+|++||||++.++...|+++|||+|+||||+|++.++||||.++|+|++
T Consensus       125 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~  204 (307)
T d1w9ya1         125 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWID  204 (307)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEE
T ss_pred             HHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEE
Confidence            99999999999999999999876545567789999999999988889999999999999999986689999999999999


Q ss_pred             cCCCCCeEEEEcchhhHHhhCCCccccccccccCCCCCCeeEEEeeecCCCCceEecCcccccccc-cccCCCCCccHHH
Q 023985          161 VPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEA-EKKQVYPKFVFED  239 (274)
Q Consensus       161 v~p~~g~~vVniGd~l~~~SnG~~~s~~HRVv~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~-~~p~~y~~~~~~e  239 (274)
                      |+|.+|++|||+||+||+||||+|+||.|||+.+++.+ ||||+||+.|+.|++|+|+++|++... ++|++|+|||++|
T Consensus       205 v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~-R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~e  283 (307)
T d1w9ya1         205 VPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGA-RMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD  283 (307)
T ss_dssp             CCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSC-CEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHH
T ss_pred             eccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCC-cEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHH
Confidence            99999999999999999999999999999999888777 999999999999999999999997432 3799999999999


Q ss_pred             HHHHHhhcccCCCchhhHhhhhh
Q 023985          240 YMKLYVPLKFQAKEPRFEAMKAV  262 (274)
Q Consensus       240 y~~~~~~~~~~~~~~~~~~~~~~  262 (274)
                      |++.++..+++.|...++++|.+
T Consensus       284 y~~~~~~~~~~~~~~~~~~~~~~  306 (307)
T d1w9ya1         284 YMKLYAGLKFQAKEPRFEAMKAM  306 (307)
T ss_dssp             HHHTTTTTTCSSHHHHHHHHHHC
T ss_pred             HHHHHHhccCCcccHHHHHhhcc
Confidence            99999999999998889999865
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure