BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023986
         (274 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SE8|A Chain A, Structure Of Single-Stranded Dna-Binding Protein (Ssb)
           From D. Radiodurans
          Length = 301

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 47  QTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFK 85
           Q     KG D +++E +L ++ W++  PE  K ++++ K
Sbjct: 66  QAERNLKGGDAVVVEGTLEYRQWEA--PEGGKRSAVNVK 102


>pdb|3UDG|A Chain A, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
 pdb|3UDG|B Chain B, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
 pdb|3UDG|C Chain C, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
          Length = 301

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 47  QTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFK 85
           Q     KG D +++E +L ++ W++  PE  K ++++ K
Sbjct: 66  QAERNLKGGDAVVVEGTLEYRQWEA--PEGGKRSAVNVK 102


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 11/61 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIM 58
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++ 
Sbjct: 854 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNMD 906

Query: 59  I 59
           +
Sbjct: 907 V 907


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 810 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 861


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 811 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 862


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 810 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 861


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,258,646
Number of Sequences: 62578
Number of extensions: 330763
Number of successful extensions: 777
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 13
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)