BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023986
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum
GN=xpnpep3 PE=2 SV=1
Length = 518
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 57 IMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFH-SPRPVSELDA 112
I+ +E + +DSNVPEK + SI +D + P + V+ H +P+ +SE+++
Sbjct: 457 IITIEPGIYISKYDSNVPEKYRGISIRVEDDVVIPNLNNSPLVLTHLAPKEISEIES 513
>sp|A0AF28|SYK_LISW6 Lysine--tRNA ligase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=lysS PE=3 SV=1
Length = 498
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 184 LSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
++ DE A++LA +H + AI YGH L+ +++ + + K QP F +
Sbjct: 338 VTSDEEARELAKKHDV-AITEHMTYGHILNEFFETYVEEKLIQPTFVY 384
>sp|Q9PR83|SYK_UREPA Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B1AI47|SYK_UREP2 Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B5ZAP2|SYK_UREU1 Lysine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQALELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLIEPTFVY 378
>sp|Q8RG52|SYK_FUSNN Lysine--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=lysS PE=3 SV=1
Length = 493
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 188 ENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
E A+KLA +H +E D + GH ++ +++ + K QP F +
Sbjct: 335 EEAKKLAKEHHVEVADHMNSVGHIINEFFEQKCEEKVIQPTFVY 378
>sp|Q75I94|BGL08_ORYSJ Beta-glucosidase 8 OS=Oryza sativa subsp. japonica GN=BGLU8 PE=1
SV=1
Length = 568
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 52 FKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELD 111
F+ + + I +++ S NW VP K+K N PTI++ E + S E
Sbjct: 378 FQRNGVPIGQQANS--NWLYIVPTGMYGAVNYIKEKYNNPTIIISENGMDQSGNLTREEF 435
Query: 112 AAATKLQKVYKSYRT--RRNLADCAVVVEELWWKALD 146
T+ + YK+Y T ++ + D A VV W LD
Sbjct: 436 LHDTERIEFYKNYLTELKKAIDDGANVVAYFAWSLLD 472
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,611,042
Number of Sequences: 539616
Number of extensions: 4153889
Number of successful extensions: 9639
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9634
Number of HSP's gapped (non-prelim): 16
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)