Query 023986
Match_columns 274
No_of_seqs 117 out of 134
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxw_B Sodium channel protein 96.5 0.0018 6.3E-08 41.1 3.0 22 109-130 4-25 (27)
2 2l53_B CAM, voltage-gated sodi 96.5 0.0017 5.9E-08 42.5 2.9 24 109-132 4-27 (31)
3 2ix7_C Myosin-5A; contractIle 94.6 0.019 6.4E-07 39.8 2.6 37 108-144 2-40 (58)
4 1n2d_C IQ2 and IQ3 motifs from 94.1 0.026 8.8E-07 37.6 2.3 19 111-129 28-46 (48)
5 2ix7_C Myosin-5A; contractIle 89.0 0.22 7.7E-06 34.3 2.4 22 110-131 27-48 (58)
6 4dck_A Sodium channel protein 88.5 0.21 7.2E-06 42.8 2.4 23 109-131 128-150 (168)
7 1n2d_C IQ2 and IQ3 motifs from 84.9 0.4 1.4E-05 31.7 1.7 22 111-132 3-24 (48)
8 3dve_B Voltage-dependent N-typ 68.8 1.7 5.9E-05 26.8 1.0 17 112-128 6-22 (23)
9 3bxl_B CAM, voltage-dependent 64.9 3.5 0.00012 26.1 1.9 17 113-129 4-20 (26)
10 3dvk_B Voltage-dependent R-typ 64.6 3.7 0.00012 25.3 1.9 17 112-128 7-23 (23)
11 1kk8_A Myosin heavy chain, str 63.1 4.3 0.00015 41.9 3.3 35 110-144 778-817 (837)
12 2bl0_A Major plasmodial myosin 55.5 8.2 0.00028 27.0 2.7 21 110-130 29-49 (63)
13 2dfs_A Myosin-5A; myosin-V, in 54.1 5.8 0.0002 41.8 2.5 19 112-130 817-835 (1080)
14 1wdc_A Scallop myosin; calcium 50.4 11 0.00038 26.3 2.7 21 110-130 31-51 (64)
15 3gn4_A Myosin-VI; unconvention 45.7 11 0.00038 31.9 2.5 20 110-129 44-63 (148)
16 1w7j_A Myosin VA; motor protei 45.6 9.6 0.00033 39.1 2.5 21 110-130 767-787 (795)
17 1kk8_A Myosin heavy chain, str 42.9 9.8 0.00033 39.2 2.1 26 111-145 805-830 (837)
18 2dfs_A Myosin-5A; myosin-V, in 42.0 14 0.00049 38.9 3.2 22 110-131 838-859 (1080)
19 2l60_A Peptide YY; GPCR ligand 41.2 24 0.00082 24.4 3.1 30 179-209 11-41 (41)
20 3g43_E Voltage-dependent L-typ 41.2 11 0.00039 29.1 1.7 19 111-129 63-81 (81)
21 1f8p_A Neuropeptide Y (PNPY); 36.0 13 0.00045 25.1 1.2 28 181-209 9-37 (37)
22 2d48_A Interleukin-4; four hel 30.5 36 0.0012 28.4 3.2 30 96-125 28-60 (129)
23 1i84_S Smooth muscle myosin he 25.9 40 0.0014 35.4 3.3 21 111-131 792-812 (1184)
24 1wdc_A Scallop myosin; calcium 24.6 47 0.0016 23.0 2.5 24 109-132 4-27 (64)
25 2bf9_A Pancreatic hormone; tur 23.1 90 0.0031 21.0 3.5 27 181-208 9-36 (36)
26 1qbf_A Peptide YY, PYY; PP-fol 22.5 13 0.00045 25.1 -0.7 28 181-209 9-37 (37)
27 1i84_S Smooth muscle myosin he 20.4 38 0.0013 35.5 1.9 26 111-145 818-843 (1184)
28 1bba_A Bovine pancreatic polyp 20.2 97 0.0033 20.8 3.2 27 181-208 9-36 (36)
No 1
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.50 E-value=0.0018 Score=41.07 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 023986 109 ELDAAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 109 e~~~AA~~iQKvYRgYRTRR~L 130 (274)
+.+.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999865
No 2
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.50 E-value=0.0017 Score=42.50 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhccCC
Q 023986 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (274)
Q Consensus 109 e~~~AA~~iQKvYRgYRTRR~Lad 132 (274)
+.+-||++||+.||+|+.||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999998764
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=94.63 E-value=0.019 Score=39.82 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccCCc--ccchHHHHHHH
Q 023986 108 SELDAAATKLQKVYKSYRTRRNLADC--AVVVEELWWKA 144 (274)
Q Consensus 108 ~e~~~AA~~iQKvYRgYRTRR~Lad~--av~~eerWw~a 144 (274)
+..+.||++||+.||||..|+..... +++.-+.+|..
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999876542 33444455544
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.026 Score=37.63 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 023986 111 DAAATKLQKVYKSYRTRRN 129 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~ 129 (274)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4599999999999999874
No 5
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=88.98 E-value=0.22 Score=34.28 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhhccC
Q 023986 110 LDAAATKLQKVYKSYRTRRNLA 131 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~La 131 (274)
...||++||..+|||..|+.+.
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998764
No 6
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=88.49 E-value=0.21 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhccC
Q 023986 109 ELDAAATKLQKVYKSYRTRRNLA 131 (274)
Q Consensus 109 e~~~AA~~iQKvYRgYRTRR~La 131 (274)
....||..||+.||.|+-||++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 35679999999999999987654
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=84.87 E-value=0.4 Score=31.74 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhhhhccCC
Q 023986 111 DAAATKLQKVYKSYRTRRNLAD 132 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~Lad 132 (274)
..||+.||+.+|||-.|+....
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988643
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=68.79 E-value=1.7 Score=26.82 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhhhhhh
Q 023986 112 AAATKLQKVYKSYRTRR 128 (274)
Q Consensus 112 ~AA~~iQKvYRgYRTRR 128 (274)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 38999999999999886
No 9
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=64.91 E-value=3.5 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhhhhhc
Q 023986 113 AATKLQKVYKSYRTRRN 129 (274)
Q Consensus 113 AA~~iQKvYRgYRTRR~ 129 (274)
||..||-.||.+..||+
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 10
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=64.58 E-value=3.7 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhhhh...
Q 023986 112 AAATKLQKVYKSYRTRR... 128 (274)
Q Consensus 112 ~AA~~iQKvYRgYRTRR... 128 (274)
=|+..||..||.++.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 38899999999999874
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=63.12 E-value=4.3 Score=41.85 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCc-----ccchHHHHHHH
Q 023986 110 LDAAATKLQKVYKSYRTRRNLADC-----AVVVEELWWKA 144 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~Lad~-----av~~eerWw~a 144 (274)
+..+|+.||+.+|||..||...-. ++..-+++|.+
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999987543 44555555554
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=55.46 E-value=8.2 Score=26.97 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 023986 110 LDAAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~L 130 (274)
+..|+..||++.|+|=.+|+-
T Consensus 29 ~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 29 KSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 456888999999999998753
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.13 E-value=5.8 Score=41.81 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhhhhcc
Q 023986 112 AAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 112 ~AA~~iQKvYRgYRTRR~L 130 (274)
.||++||+.||||+.||..
T Consensus 817 ~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 817 RAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHH
Confidence 4555555556666555543
No 14
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=50.37 E-value=11 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 023986 110 LDAAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~L 130 (274)
+..|+..||++.|+|=.+|+-
T Consensus 31 ~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 31 QRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 356777899998888888753
No 15
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=45.73 E-value=11 Score=31.86 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhhhhhhc
Q 023986 110 LDAAATKLQKVYKSYRTRRN 129 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~ 129 (274)
..+|+++||++-|||-+||.
T Consensus 44 R~~~~i~iQktvR~~L~rkk 63 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRR 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999965
No 16
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=45.63 E-value=9.6 Score=39.07 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 023986 110 LDAAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~L 130 (274)
+.++|+.||+++|||..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999764
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=42.93 E-value=9.8 Score=39.24 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhhhhhhhccCCcccchHHHHHHHh
Q 023986 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKAL 145 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~Lad~av~~eerWw~al 145 (274)
..||++||+.+|+|..||+-. ||+.+
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~---------w~~l~ 830 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQ---------WWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH---------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchH---------HHHHH
Confidence 579999999999999998653 88775
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.97 E-value=14 Score=38.86 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhhhhhccC
Q 023986 110 LDAAATKLQKVYKSYRTRRNLA 131 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~La 131 (274)
...||+.||..+|||..||++.
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776654
No 19
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=41.23 E-value=24 Score=24.36 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=24.4
Q ss_pred HhcCCCChhHHHhHH-HHHHHHHhcCCCcccc
Q 023986 179 KVGKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (274)
Q Consensus 179 kvGkGlskd~kAqkl-~lq~WLE~IDprHRYG 209 (274)
.-|.+.|.++-|+=+ +|+|.+-+|- |+|||
T Consensus 11 ~Pg~~aspEela~Y~~~Lr~YinlvT-R~RyG 41 (41)
T 2l60_A 11 RELKKLSPEELNRYYASLRHYLNLVT-RQRYX 41 (41)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHT-TTCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 457888999989887 7999999884 88998
No 20
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=41.23 E-value=11 Score=29.14 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 023986 111 DAAATKLQKVYKSYRTRRN 129 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~ 129 (274)
-=||..||..||.||.|++
T Consensus 63 iYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 63 FYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3499999999999999864
No 21
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=35.96 E-value=13 Score=25.12 Aligned_cols=28 Identities=32% Similarity=0.633 Sum_probs=22.0
Q ss_pred cCCCChhHHHhHH-HHHHHHHhcCCCcccc
Q 023986 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (274)
Q Consensus 181 GkGlskd~kAqkl-~lq~WLE~IDprHRYG 209 (274)
|.+.+.++-||=+ +|+|.+-+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677888888877 799999888 478887
No 22
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=30.45 E-value=36 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCCccccCCCCCchHH---HHHHHHHHhhhhhh
Q 023986 96 PEPVVFHSPRPVSELD---AAATKLQKVYKSYR 125 (274)
Q Consensus 96 p~~~~~~sp~~~~e~~---~AA~~iQKvYRgYR 125 (274)
+-|.+|..|+..+|.+ +||+.|++.|..+-
T Consensus 28 ~V~Dvfaa~KNttEkE~~CrAatvLrq~Y~~H~ 60 (129)
T 2d48_A 28 TVTDIFAASKNTTEKETFCRAATVLRQFYSHHE 60 (129)
T ss_dssp EEECGGGSCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3456899999888877 79999999999763
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.85 E-value=40 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhhhhhhccC
Q 023986 111 DAAATKLQKVYKSYRTRRNLA 131 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~La 131 (274)
..+|+.||+++|||..||...
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~ 812 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFA 812 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999988765
No 24
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=24.58 E-value=47 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhccCC
Q 023986 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (274)
Q Consensus 109 e~~~AA~~iQKvYRgYRTRR~Lad 132 (274)
....+++.||...|||=.|++..-
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k 27 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKK 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999987544
No 25
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=23.15 E-value=90 Score=20.98 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=21.9
Q ss_pred cCCCChhHHHhHH-HHHHHHHhcCCCccc
Q 023986 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (274)
Q Consensus 181 GkGlskd~kAqkl-~lq~WLE~IDprHRY 208 (274)
|.+.+.++-||-. +|+|.+-+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6778889988876 7999999884 6665
No 26
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=22.52 E-value=13 Score=25.14 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=19.6
Q ss_pred cCCCChhHHHhHH-HHHHHHHhcCCCcccc
Q 023986 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (274)
Q Consensus 181 GkGlskd~kAqkl-~lq~WLE~IDprHRYG 209 (274)
|.+.+.++-||=+ +|+|.+-+| -|+|||
T Consensus 9 g~da~pEela~Y~~~Lr~Yinlv-TR~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLV-TRQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHT-SSSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 5566666766665 688888877 478887
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.40 E-value=38 Score=35.52 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhhhhhhccCCcccchHHHHHHHh
Q 023986 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKAL 145 (274)
Q Consensus 111 ~~AA~~iQKvYRgYRTRR~Lad~av~~eerWw~al 145 (274)
..|++.||+.+|+|-.||+. .||+..
T Consensus 818 ~~a~~~iQ~~~r~~~~~k~~---------~~~rl~ 843 (1184)
T 1i84_S 818 LESIFCIQYNVRSFMNVXHW---------PWMXLF 843 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHHH
Confidence 47999999999999999873 388764
No 28
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=20.18 E-value=97 Score=20.82 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.8
Q ss_pred cCCCChhHHHhHH-HHHHHHHhcCCCccc
Q 023986 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (274)
Q Consensus 181 GkGlskd~kAqkl-~lq~WLE~IDprHRY 208 (274)
|.+.+.++-||-. +|+|.+-+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6778888888876 7999999985 6665
Done!