Query 023986
Match_columns 274
No_of_seqs 117 out of 134
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 16:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysa2 c.37.1.9 (A:4-33,A:80- 76.5 0.81 5.9E-05 44.0 3.8 36 110-145 734-774 (794)
2 d1kk8a2 c.37.1.9 (A:1-28,A:77- 70.4 1.4 0.0001 42.3 3.8 36 110-145 730-770 (789)
3 d2mysa2 c.37.1.9 (A:4-33,A:80- 62.1 1.5 0.00011 42.2 2.1 27 110-145 760-786 (794)
4 d1w7ja2 c.37.1.9 (A:63-792) My 62.1 1.6 0.00012 41.2 2.3 21 110-130 705-725 (730)
5 d1kk8a2 c.37.1.9 (A:1-28,A:77- 61.0 1.6 0.00012 41.9 2.1 26 112-146 758-783 (789)
6 d2o9ca2 d.110.3.9 (A:4-130) Ba 29.5 15 0.0011 27.1 2.6 32 236-272 12-43 (127)
7 d2b8ua1 a.26.1.2 (A:1-129) Int 18.3 40 0.0029 26.2 3.2 29 96-124 28-59 (129)
8 d3pvia_ c.52.1.6 (A:) Restrict 7.9 46 0.0033 26.3 0.4 27 211-246 118-144 (156)
9 d2cu2a2 c.68.1.20 (A:1-268) Pu 7.2 55 0.004 26.0 0.6 12 229-240 251-262 (268)
10 d1cbya_ d.103.1.1 (A:) Mosquit 5.3 1.3E+02 0.0092 25.1 1.8 53 213-273 148-202 (227)
No 1
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=76.50 E-value=0.81 Score=44.01 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCc-----ccchHHHHHHHh
Q 023986 110 LDAAATKLQKVYKSYRTRRNLADC-----AVVVEELWWKAL 145 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~Lad~-----av~~eerWw~al 145 (274)
+..+|++||+.+|||..||..+-. ++..=+++|+..
T Consensus 734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~ 774 (794)
T d2mysa2 734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSF 774 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999877532 455556666544
No 2
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=70.37 E-value=1.4 Score=42.26 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhhhhhhhccCC-----cccchHHHHHHHh
Q 023986 110 LDAAATKLQKVYKSYRTRRNLAD-----CAVVVEELWWKAL 145 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~Lad-----~av~~eerWw~al 145 (274)
..++|+.||+++|||..|++..- +++..-+++|++.
T Consensus 730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~ 770 (789)
T d1kk8a2 730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 770 (789)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986542 3555566666654
No 3
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=62.13 E-value=1.5 Score=42.16 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCcccchHHHHHHHh
Q 023986 110 LDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKAL 145 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~Lad~av~~eerWw~al 145 (274)
+..||..||+.||+|.+||.- .||+.+
T Consensus 760 ~r~a~~~IQ~~~R~~~~~r~~---------~~~rl~ 786 (794)
T d2mysa2 760 RRESIFCIQYNVRSFMNVKHW---------PWMKLF 786 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------HHHHHH
Confidence 367999999999999999875 488765
No 4
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=62.07 E-value=1.6 Score=41.23 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 023986 110 LDAAATKLQKVYKSYRTRRNL 130 (274)
Q Consensus 110 ~~~AA~~iQKvYRgYRTRR~L 130 (274)
..+||++||+++|||-+||+.
T Consensus 705 l~~~~~~iQ~~~R~~l~Rk~~ 725 (730)
T d1w7ja2 705 LRAACIRIQKTIRGWLMRKKY 725 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999853
No 5
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=61.01 E-value=1.6 Score=41.90 Aligned_cols=26 Identities=23% Similarity=0.555 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhhhhhccCCcccchHHHHHHHhH
Q 023986 112 AAATKLQKVYKSYRTRRNLADCAVVVEELWWKALD 146 (274)
Q Consensus 112 ~AA~~iQKvYRgYRTRR~Lad~av~~eerWw~ald 146 (274)
.|++.|||.||+|..||.. .||+.+-
T Consensus 758 ~ai~~iQ~~~R~~~~rr~~---------~~~~l~~ 783 (789)
T d1kk8a2 758 IGLSVIQRNIRKWLVLRNW---------QWWKLYS 783 (789)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccc---------HHHHHHH
Confidence 4888999999999999886 4887653
No 6
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.45 E-value=15 Score=27.08 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCcccccCCCChHHHhhhhhhccCcccccCeEEEEee
Q 023986 236 DGKEVNLEKCPRNVLQRQCIKYLGPVSFAPMHLIMHL 272 (274)
Q Consensus 236 eGKevdLe~CPR~kLe~e~I~YL~peER~~Yev~Vd~ 272 (274)
-|++|||..| ++|=|...|.-|=.-|++.||.
T Consensus 12 ~~~~vdL~nC-----erEPIHipG~IQphG~LLald~ 43 (127)
T d2o9ca2 12 GGPEITTENC-----EREPIHIPGSIQPHGALLTADG 43 (127)
T ss_dssp TCCCCCTTTG-----GGCCTTCCSEECTTSEEEEEET
T ss_pred CCCccCcccc-----ccccccCCCccCCCeEEEEEEC
Confidence 4789999999 5678999999999999999873
No 7
>d2b8ua1 a.26.1.2 (A:1-129) Interleukin-4 (IL-4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.33 E-value=40 Score=26.16 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCccccCCCCCchHH---HHHHHHHHhhhhh
Q 023986 96 PEPVVFHSPRPVSELD---AAATKLQKVYKSY 124 (274)
Q Consensus 96 p~~~~~~sp~~~~e~~---~AA~~iQKvYRgY 124 (274)
+-|.+|..|...+|.+ +||+.+|+.|+.+
T Consensus 28 ~V~Dvfaa~KNTtEkE~~CrAatvLr~~y~~H 59 (129)
T d2b8ua1 28 TVTDIFAASKNTTEKETFCRAATVLRQFYSHH 59 (129)
T ss_dssp EEECGGGSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhccCCCCcchhHhhHHHHHHHHHHHhc
Confidence 3456899999888877 8999999999876
No 8
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=7.94 E-value=46 Score=26.31 Aligned_cols=27 Identities=41% Similarity=0.931 Sum_probs=19.0
Q ss_pred cHHHHHHHhhccCCCCCCceeeecCCCcccccCCCC
Q 023986 211 NLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCP 246 (274)
Q Consensus 211 NL~~Yy~~W~~s~t~q~FFyWLD~GeGKevdLe~CP 246 (274)
.|.+||+.|-+. |-+- +||++|-+.-|
T Consensus 118 ~lE~~Y~kWE~q--------w~~~-ggKDINNPKIP 144 (156)
T d3pvia_ 118 DLEFYYDKWERK--------WYSD-GHKDINNPKIP 144 (156)
T ss_dssp HHHHHHHHHHHH--------HHHT-TSCCBCCCCEE
T ss_pred HhHHHHHHHHHH--------Hhhc-CCcccCCCCcc
Confidence 466788888874 5444 36888877766
No 9
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}
Probab=7.16 E-value=55 Score=25.96 Aligned_cols=12 Identities=42% Similarity=0.874 Sum_probs=9.1
Q ss_pred ceeeecCCCccc
Q 023986 229 FYWLDVGDGKEV 240 (274)
Q Consensus 229 FyWLD~GeGKev 240 (274)
|||.|+|.=..+
T Consensus 251 ~~W~DvGtw~s~ 262 (268)
T d2cu2a2 251 FPWDDVGNWRAL 262 (268)
T ss_dssp SCEECCCSTTHH
T ss_pred CCcCCCcCHHHH
Confidence 589999975544
No 10
>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus thuringiensis, strain Kyushuensis [TaxId: 1428]}
Probab=5.30 E-value=1.3e+02 Score=25.12 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.1
Q ss_pred HHHHHHhhc--cCCCCCCceeeecCCCcccccCCCChHHHhhhhhhccCcccccCeEEEEeee
Q 023986 213 HFYYDIWSD--SKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPVSFAPMHLIMHLI 273 (274)
Q Consensus 213 ~~Yy~~W~~--s~t~q~FFyWLD~GeGKevdLe~CPR~kLe~e~I~YL~peER~~Yev~Vd~~ 273 (274)
.+||++-.. ...+..|+|=|-+|=-=.|| .++|.|.+|+-+.-++|+|.|++|
T Consensus 148 sY~YnIlFaIQn~dtg~~m~~lpi~feItv~--------~~ke~vlf~Ti~D~a~y~V~ikal 202 (227)
T d1cbya_ 148 SYYYNILFSIQNEDTGAVMAVLPLAFEVSVD--------VEKQKVLFFTIKDSARYEVKMKAL 202 (227)
T ss_dssp EEEEEEEEEECSTTTTTEEEEEEEEEEEEES--------SCHHHHTTCCTTCEEEEEEEEEEE
T ss_pred ceEEEEEEEEecCCCceEEEEEEEEEEEEEE--------eeeeEEEEEEeecchhheEehhhh
Confidence 345555544 22233777777775433444 468999999999999999999876
Done!