BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023987
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 28/243 (11%)
Query: 15 KQVHLFYCVECEELARKVAAQSDLITLQ--SINWRNFADGWPNLYINSAHDIRGQHVAFL 72
K + +F ELA+++A D++ +Q + F+DG + IN IRG +
Sbjct: 8 KNLKIFSLNSNPELAKEIA---DIVGVQLGKCSVTRFSDG--EVQINIEESIRGCDCYII 62
Query: 73 ASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARIL 130
S S P I E + ++ AL R + +V+P++ +R + TA A +L
Sbjct: 63 QSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLL 122
Query: 131 SNIPTSRGGPTSLVIYDIHALQERFYFS---DHVLPLFETGIPLLKQRLHQLPDANNIVI 187
G T ++ D+HA Q + +F DH++ G+P+L + + +IVI
Sbjct: 123 ET-----AGATRVIALDLHAPQIQGFFDIPIDHLM-----GVPILGEYFEG-KNLEDIVI 171
Query: 188 AFPDDGAWKRFHKMLDHF--PTVVCAKVREGDKRIVRIKE--GNPAGCHVVIVDDLVQSG 243
PD G R K+ D P + K R + + GN G +++DD++ +
Sbjct: 172 VSPDHGGVTRARKLADRLKAPIAIIDK-RRPRPNVAEVMNIVGNIEGKTAILIDDIIDTA 230
Query: 244 GTL 246
GT+
Sbjct: 231 GTI 233
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 49 FADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFF 106
F+DG + I ++RG+ V L S +P + E + ++ AL R T +P+F
Sbjct: 39 FSDGEIQVEIQ--ENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYF 96
Query: 107 PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFE 166
+R VA + A++++N+ G ++ D+HA Q + +F V ++
Sbjct: 97 GYARQDRRPRSARVAIS---AKVVANM-LEIAGVERIITMDLHADQIQGFFDIPVDNIYA 152
Query: 167 TGIPLLKQRLHQLPDANNIVIAFPDDGAWKR---FHKMLDHFPTVVCAKVREGDKRIVRI 223
T I L R PD +++ PD G R K L+ ++ + + + V
Sbjct: 153 TPILLGDLRKQNYPD---LLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMN 209
Query: 224 KEGNPAGCHVVIVDDLVQSGGTLIE-CQVL 252
G G VI+DD+V + GTL + QVL
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVL 239
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C EL++K+A + + ++ + + + + +RG+ V + + S I
Sbjct: 41 CMELSKKIAER---LGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIM 97
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + ++YA S V+P+FP +M + G + ++++L+++ + G T
Sbjct: 98 ELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSI-----VSKLLASM-MCKAGLTH 151
Query: 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANNIVIAFPDDGAWKR 197
L+ D+H + + +F+ V L + P L Q + ++PD N VI + KR
Sbjct: 152 LITMDLHQKEIQGFFNIPVDNLRAS--PFLLQYIQEEIPDYRNAVIVAKSPASAKR 205
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C ELA+++ + +S+ ++ +G + I + +RGQ + + + +
Sbjct: 38 CTELAKRITERLGAELGKSVVYQE-TNGETRVEIKES--VRGQDIFIIQTIPRDVNTAVM 94
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + + YAL + V+P+FP +M + G + + ++L+++ ++ G T
Sbjct: 95 ELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSI-----VCKLLASM-LAKAGLTH 148
Query: 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANNIVIAFPDDGAWKR 197
++ D+H + + +FS V L + P L Q + ++P+ N VI A KR
Sbjct: 149 IITMDLHQKEIQGFFSFPVDNLRAS--PFLLQYIQEEIPNYRNAVIVAKSPDAAKR 202
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 30/218 (13%)
Query: 45 NWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104
+ R F DG LY+ D+ G ++ + + S + E I + A+ S ++ P
Sbjct: 28 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 85
Query: 105 FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFY----FSDH 160
++ + + G+ ++ + I S+ S + DIH + Y FSD
Sbjct: 86 YYGYARQHQRYKNGEPISSQILTEIYSSYSNS------IATVDIHDEKTLSYSKVKFSD- 138
Query: 161 VLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM-----LDHFPTVVCAKVRE 215
++ R ++ D + +V PDDG R + HF K R
Sbjct: 139 ----LHANDAIV--RYYKNVDVDYVV--SPDDGGLARVADISAKLGKKHF---FIEKKRI 187
Query: 216 GDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVL 252
D+ + +++ + G ++IVDD++ +GGT+ + L
Sbjct: 188 DDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGL 225
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 45 NWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104
+ R F DG LY+ D+ G ++ + + S + E I + A+ S ++ P
Sbjct: 30 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 87
Query: 105 FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPL 164
++ + + G+ ++ + I S+ S + DIH + Y L
Sbjct: 88 YYGYARQHQRYKNGEPISSQILTEIYSSYSNS------IATVDIHDEKTLSYSKVKFSDL 141
Query: 165 FETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM-----LDHFPTVVCAKVREGDKR 219
+ R ++ D + +V PDDG R + HF K R D+
Sbjct: 142 HANDAIV---RYYKNVDVDYVV--SPDDGGLARVADISAKLGKKHF---FIEKKRIDDRT 193
Query: 220 I-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVL 252
+ +++ + G ++IVDD++ +GGT+ + L
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGL 227
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 21/229 (9%)
Query: 24 ECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPG-VIF 82
+ + LA KVA + L + ++ F D +Y+ +I + + + I
Sbjct: 8 QSQNLAFKVAKLLN-TKLTRVEYKRFPDN--EIYVRIVDEINDDEAVIINTQKNQNDAIV 64
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E I + AL V TLV P+ ++ G+ + +A+I SNI
Sbjct: 65 ETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI------VDK 118
Query: 143 LVIYDIHALQERFYFSDHVLP-LFETGIPLLKQRLHQLPDANNIVIAFPDDGAW---KRF 198
L+ + H + +F+ +P ++ +P L + + N+ ++ PD GA K
Sbjct: 119 LITINPHETHIKDFFT---IPFIYGDAVPKLAEYVKD--KLNDPIVLAPDKGALEFAKTA 173
Query: 199 HKMLD-HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTL 246
K+L+ + + ++ + +I K + V IVDD++ +GGT+
Sbjct: 174 SKILNAEYDYLEKTRLSPTEIQIAP-KTLDAKDRDVFIVDDIISTGGTM 221
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 224 KEGNPAGCHVVIVDDLVQSGGTL-IECQVLSYLLPAVLLKMCVSEFE 269
K+ G VV+VDDL+ +GGT+ C++L L VL CVS E
Sbjct: 114 KDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVL--ECVSLVE 158
>pdb|2RJ2|A Chain A, Crystal Structure Of The Sugar Recognizing Scf Ubiquitin
Ligase At 1.7 Resolution
Length = 185
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 108 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 167
Query: 223 IK 224
K
Sbjct: 168 WK 169
>pdb|1UMI|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 107 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 166
Query: 223 IK 224
K
Sbjct: 167 WK 168
>pdb|1UMH|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 107 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 166
Query: 223 IK 224
K
Sbjct: 167 WK 168
>pdb|2E33|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 197
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 120 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 179
Query: 223 IK 224
K
Sbjct: 180 WK 181
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
>pdb|2E31|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|C Chain C, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 297
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 220 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 279
Query: 223 IK 224
K
Sbjct: 280 WK 281
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,275,120
Number of Sequences: 62578
Number of extensions: 340526
Number of successful extensions: 907
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 23
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)